AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34189

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34189.t1 MTR_6g007170 92.938 354 25 0 1 354 33 386 0.0 683
MS.gene34189.t1 MTR_6g007175 92.938 354 6 1 1 354 2 336 0.0 670
MS.gene34189.t1 MTR_4g005880 28.455 246 172 3 90 335 152 393 4.23e-25 106
MS.gene34189.t1 MTR_4g013090 27.799 259 170 5 82 335 60 306 4.40e-24 100
MS.gene34189.t1 MTR_3g005970 30.952 294 164 11 42 313 75 351 2.51e-23 100
MS.gene34189.t1 MTR_1g107480 29.719 249 165 4 90 335 119 360 2.82e-23 101
MS.gene34189.t1 MTR_4g013100 25.267 281 193 5 59 335 40 307 1.32e-21 94.0
MS.gene34189.t1 MTR_8g033390 27.413 259 173 5 79 332 65 313 1.44e-21 94.4
MS.gene34189.t1 MTR_4g012960 26.275 255 176 4 82 335 60 303 4.59e-20 89.7
MS.gene34189.t1 MTR_8g033400 28.175 252 157 8 90 334 87 321 1.81e-17 82.8
MS.gene34189.t1 MTR_8g033410 25.597 293 185 8 63 335 40 319 7.03e-17 80.9
MS.gene34189.t1 MTR_2g101840 26.772 254 176 6 84 335 62 307 1.14e-14 74.3
MS.gene34189.t1 MTR_4g013135 29.528 254 168 6 84 335 62 306 1.87e-13 70.5
MS.gene34189.t1 MTR_1g112510 26.383 235 152 6 97 313 94 325 7.76e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34189.t1 AT5G14780 83.616 354 58 0 1 354 17 370 0.0 596
MS.gene34189.t1 AT5G14780 83.616 354 58 0 1 354 31 384 0.0 595
MS.gene34189.t1 AT5G14780 83.616 354 58 0 1 354 5 358 0.0 595
MS.gene34189.t1 AT1G17745 29.070 258 178 4 79 335 134 387 5.52e-26 109
MS.gene34189.t1 AT4G34200 29.825 228 156 3 90 317 125 348 5.92e-24 103
MS.gene34189.t1 AT1G72190 27.817 284 189 6 36 313 69 342 8.38e-24 101
MS.gene34189.t1 AT1G17745 27.208 283 178 5 79 335 134 414 6.41e-23 100
MS.gene34189.t1 AT3G19480 27.642 246 174 3 90 335 110 351 1.64e-22 99.0
MS.gene34189.t1 AT1G79870 27.843 255 175 5 84 337 62 308 2.80e-21 93.2
MS.gene34189.t1 AT1G12550 25.106 235 170 2 79 313 64 292 3.02e-20 90.5
MS.gene34189.t1 AT2G45630 28.750 240 164 4 77 315 78 311 1.36e-19 89.0
MS.gene34189.t1 AT1G79870 25.490 255 162 5 84 337 62 289 2.40e-15 75.9

Find 96 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTGAGAGGCACTTTA+AGG 0.168046 6.2:+2744733 MS.gene34189:CDS
TTCAACACATCCAACAAAAT+TGG 0.168585 6.2:-2743318 None:intergenic
ATATAAAAGGTTACAGTTAA+AGG 0.184451 6.2:-2743900 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.191495 6.2:-2743944 None:intergenic
CAATGCTCGTGGGGCAATTA+TGG 0.213265 6.2:+2744231 MS.gene34189:CDS
GCCATGACTCCTCATATTTC+TGG 0.221909 6.2:+2744531 MS.gene34189:CDS
TAAATTATACCTTGTCTTAT+CGG 0.247196 6.2:-2744038 None:intergenic
CTCAACGCTGCGGCTGCTGC+TGG 0.289747 6.2:+2743650 MS.gene34189:CDS
TAGCGCCATGGATGATCTTT+TGG 0.296464 6.2:-2744495 None:intergenic
TTCACAATGTAGTGCTGTTC+AGG 0.309434 6.2:-2744767 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.310313 6.2:+2743944 MS.gene34189:CDS
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 6.2:-2743886 None:intergenic
TATAAAAGGTTACAGTTAAA+GGG 0.334347 6.2:-2743899 None:intergenic
TCAACACATCCAACAAAATT+GGG 0.339618 6.2:-2743317 None:intergenic
CGCTTTCTTAATTCTTTCCT+CGG 0.344856 6.2:-2743576 None:intergenic
TAAGTCTATCATGATATAAA+AGG 0.348710 6.2:-2743913 None:intergenic
GGTTACAAGCAGGCTGTTGC+CGG 0.355403 6.2:+2743767 MS.gene34189:CDS
GACAAAGAAGGACCTGATTC+TGG 0.363375 6.2:+2743401 MS.gene34189:CDS
GATACTACATTCACCGGTAT+TGG 0.372695 6.2:-2744808 None:intergenic
TAGGTTACAGTGGTGATGTT+TGG 0.375068 6.2:+2744457 MS.gene34189:intron
ACCGGTATTGGCTTGCCAAT+TGG 0.379845 6.2:-2744796 None:intergenic
GGTCAGTTACGTTATGCTGC+TGG 0.379919 6.2:+2744701 MS.gene34189:intron
GTCAGTTACGTTATGCTGCT+GGG 0.386317 6.2:+2744702 MS.gene34189:intron
CTTTCCTCGGTGACATAGGC+AGG 0.386770 6.2:-2743563 None:intergenic
TCAAAATTCTAACCAGAATC+AGG 0.393287 6.2:-2743413 None:intergenic
CGTCTTTCCTTCAAGATCAT+AGG 0.406591 6.2:-2743822 None:intergenic
ACTTAAGATGGAGCCTGAAT+TGG 0.406632 6.2:+2743931 MS.gene34189:CDS
GGTGAAATGGTGTAGATATC+AGG 0.417800 6.2:-2743541 None:intergenic
ATATCATGATAGACTTAAGA+TGG 0.430838 6.2:+2743919 MS.gene34189:CDS
CATTGTGAAGCAAGGCCAAT+TGG 0.431813 6.2:+2744781 MS.gene34189:CDS
ATAAACTACCTGTGCATCAA+TGG 0.432079 6.2:-2744559 None:intergenic
TGAGGAGTCATGGCATGATT+AGG 0.436581 6.2:-2744522 None:intergenic
ATGCTTGAGAGGCACTTTAA+GGG 0.439584 6.2:+2744734 MS.gene34189:CDS
GGAGGAAAGAAGAAAATTGT+AGG 0.439790 6.2:+2743257 MS.gene34189:CDS
AGCAGGCTGTTGCCGGAGAA+TGG 0.441500 6.2:+2743774 MS.gene34189:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 6.2:+2743815 MS.gene34189:CDS
GGATGTGTTGAAGGAGCATT+AGG 0.450524 6.2:+2743329 MS.gene34189:CDS
TGTACTAGTGGACACATTGC+AGG 0.452738 6.2:+2744277 MS.gene34189:CDS
CGGTTGGTGCTGGACGGATC+GGG 0.468797 6.2:+2743852 MS.gene34189:CDS
GTGACATAGGCAGGGTGAAA+TGG 0.470645 6.2:-2743554 None:intergenic
ACGGTTGGTGCTGGACGGAT+CGG 0.474630 6.2:+2743851 MS.gene34189:CDS
CTCGTGAGGAATTTCTTGCC+TGG 0.476350 6.2:+2743746 MS.gene34189:CDS
GCCGGAGAATGGAATGTTGC+TGG 0.480317 6.2:+2743785 MS.gene34189:CDS
TATTATTGAGAATAGGCCTC+TGG 0.487053 6.2:+2743236 None:intergenic
GATATCAGGACATGCAGATC+GGG 0.492666 6.2:-2743527 None:intergenic
GCCAATTGGCAAGCCAATAC+CGG 0.498456 6.2:+2744795 MS.gene34189:CDS
ACGGTTGGAACGGTTGGTGC+TGG 0.499961 6.2:+2743842 MS.gene34189:CDS
ACCAGCAACATTCCATTCTC+CGG 0.501972 6.2:-2743786 None:intergenic
ACCTTGTCTTATCGGTGAGA+GGG 0.507302 6.2:-2744030 None:intergenic
AATTCTTTCCTCGGTGACAT+AGG 0.513371 6.2:-2743567 None:intergenic
GCAACAGCCTGCTTGTAACC+AGG 0.517533 6.2:-2743764 None:intergenic
GGAAAGACGGTTGGAACGGT+TGG 0.521323 6.2:+2743836 MS.gene34189:CDS
TTGATTGTTAACAATGCTCG+TGG 0.521418 6.2:+2744220 MS.gene34189:CDS
TTTCTTGCCTGGTTACAAGC+AGG 0.523136 6.2:+2743757 MS.gene34189:CDS
AGAAATTGGAGCTCAGTTTG+AGG 0.526267 6.2:+2743958 MS.gene34189:CDS
TGGAACCACCATTGATGCAC+AGG 0.536965 6.2:+2744551 MS.gene34189:CDS
CACAGGAAGCAACGTAGTAT+CGG 0.541220 6.2:+2743691 MS.gene34189:CDS
TGAGAGGCACTTTAAGGGTG+AGG 0.541517 6.2:+2744739 MS.gene34189:CDS
AGAATCGCTAAGTTGAAGAA+AGG 0.545413 6.2:+2744193 MS.gene34189:CDS
ATAACAACTATGTCGCACTT+TGG 0.549637 6.2:-2744001 None:intergenic
GATCTTGAAGGAAAGACGGT+TGG 0.556559 6.2:+2743827 MS.gene34189:CDS
ACTTTGGTAGCATTGTATCA+AGG 0.557573 6.2:-2743985 None:intergenic
TACCTTGTCTTATCGGTGAG+AGG 0.560917 6.2:-2744031 None:intergenic
TCCAGAAATATGAGGAGTCA+TGG 0.561503 6.2:-2744532 None:intergenic
TTAACCGTCGCAGAGGTCAC+AGG 0.565278 6.2:+2743674 MS.gene34189:CDS
ACATCCAACAAAATTGGGGT+TGG 0.565621 6.2:-2743312 None:intergenic
GTTGCTGATGCTTGTACTAG+TGG 0.565800 6.2:+2744265 MS.gene34189:CDS
AATGTGATCAGAACCAATGC+CGG 0.567247 6.2:-2743624 None:intergenic
CAGCTCCAAAAGATCATCCA+TGG 0.568481 6.2:+2744490 MS.gene34189:CDS
TGATTGTTAACAATGCTCGT+GGG 0.577213 6.2:+2744221 MS.gene34189:CDS
AGATATCAGGACATGCAGAT+CGG 0.580334 6.2:-2743528 None:intergenic
TTGGAACGGTTGGTGCTGGA+CGG 0.591545 6.2:+2743846 MS.gene34189:CDS
TGAAGGAAAGACGGTTGGAA+CGG 0.596590 6.2:+2743832 MS.gene34189:CDS
ATTGTAGGTGTGTTCTACAA+AGG 0.596743 6.2:+2743272 MS.gene34189:CDS
TTTCATCTTATAGGTTACAG+TGG 0.598319 6.2:+2744447 MS.gene34189:intron
ATTGTCACAGATGACAAAGA+AGG 0.604616 6.2:+2743389 MS.gene34189:CDS
CAACGTAGTATCGGTTGCTG+AGG 0.609487 6.2:+2743700 MS.gene34189:CDS
GCTTCCTGTGACCTCTGCGA+CGG 0.611055 6.2:-2743678 None:intergenic
TGATTAGGCATGTAGCGCCA+TGG 0.614868 6.2:-2744507 None:intergenic
TGAGAATTCTCATTCTCGTG+AGG 0.615649 6.2:+2743732 MS.gene34189:CDS
CTATGATCTTGAAGGAAAGA+CGG 0.616356 6.2:+2743823 MS.gene34189:CDS
CAACACATCCAACAAAATTG+GGG 0.620958 6.2:-2743316 None:intergenic
CCTTGTCTTATCGGTGAGAG+GGG 0.620981 6.2:-2744029 None:intergenic
TATTGAGAATAGGCCTCTGG+AGG 0.626934 6.2:+2743239 None:intergenic
CCCCTCTCACCGATAAGACA+AGG 0.628167 6.2:+2744029 MS.gene34189:CDS
AACTACCTGTGCATCAATGG+TGG 0.632641 6.2:-2744556 None:intergenic
CGCGAGTGGCTTGAATCACA+AGG 0.636363 6.2:+2743356 MS.gene34189:CDS
TTTCCTCGGTGACATAGGCA+GGG 0.636732 6.2:-2743562 None:intergenic
GATTGTTAACAATGCTCGTG+GGG 0.637460 6.2:+2744222 MS.gene34189:CDS
CAGCACTACATTGTGAAGCA+AGG 0.639193 6.2:+2744773 MS.gene34189:CDS
GAGCATTAGGTATACGCGAG+TGG 0.657382 6.2:+2743342 MS.gene34189:CDS
TGCTGGTTTAACCGTCGCAG+AGG 0.660243 6.2:+2743667 MS.gene34189:CDS
TCAGTTACGTTATGCTGCTG+GGG 0.676617 6.2:+2744703 MS.gene34189:intron
ATGGTGGTTCCAGAAATATG+AGG 0.685776 6.2:-2744540 None:intergenic
TCACATTGATCTCAACGCTG+CGG 0.717985 6.2:+2743640 MS.gene34189:CDS
TCACCCTGCCTATGTCACCG+AGG 0.774835 6.2:+2743559 MS.gene34189:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTATCTTAAAAGTTTT+TGG + chr6.2:2743457-2743476 MS.gene34189:intron 15.0%
!!! TTTAAGATAAAGTTTAAAGA+GGG - chr6.2:2743451-2743470 None:intergenic 15.0%
!!! TTTTAAGATAAAGTTTAAAG+AGG - chr6.2:2743452-2743471 None:intergenic 15.0%
!! ACTCATAGTTTACATAATAA+TGG - chr6.2:2744112-2744131 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG - chr6.2:2743903-2743922 None:intergenic 20.0%
!! TAAATTATACCTTGTCTTAT+CGG - chr6.2:2744041-2744060 None:intergenic 20.0%
!! TAAGTCTATCATGATATAAA+AGG - chr6.2:2743916-2743935 None:intergenic 20.0%
!! TACTATTATCGATCTATTAA+CGG + chr6.2:2744062-2744081 MS.gene34189:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG - chr6.2:2743902-2743921 None:intergenic 20.0%
!!! TGATATTGATAATTGAAACT+TGG + chr6.2:2744680-2744699 MS.gene34189:intron 20.0%
! AAAAATGGAGAAAATGTAGT+CGG - chr6.2:2744646-2744665 None:intergenic 25.0%
! ATATCATGATAGACTTAAGA+TGG + chr6.2:2743919-2743938 MS.gene34189:CDS 25.0%
! TGAACTTAGCTAAAGAAAAA+AGG - chr6.2:2744612-2744631 None:intergenic 25.0%
!! AAAAAAGTTTTCTCATTGCT+AGG - chr6.2:2744139-2744158 None:intergenic 25.0%
!! AGTAATTTGCGCAAAAAAAA+TGG - chr6.2:2744661-2744680 None:intergenic 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG + chr6.2:2744154-2744173 MS.gene34189:intron 25.0%
!!! AGTTTACATAATAATGGACA+TGG - chr6.2:2744106-2744125 None:intergenic 25.0%
ACAGCTAAGTTTCATCTTAT+AGG + chr6.2:2744438-2744457 MS.gene34189:intron 30.0%
CAGAAACATAAATGAAATCG+AGG - chr6.2:2744378-2744397 None:intergenic 30.0%
TCAAAATTCTAACCAGAATC+AGG - chr6.2:2743416-2743435 None:intergenic 30.0%
TCAACACATCCAACAAAATT+GGG - chr6.2:2743320-2743339 None:intergenic 30.0%
TTCAACACATCCAACAAAAT+TGG - chr6.2:2743321-2743340 None:intergenic 30.0%
TTTCATCTTATAGGTTACAG+TGG + chr6.2:2744447-2744466 MS.gene34189:intron 30.0%
! AATTTTGTTGGATGTGTTGA+AGG + chr6.2:2743320-2743339 MS.gene34189:CDS 30.0%
! TATTAACGGTCTAGTTTACA+AGG + chr6.2:2744076-2744095 MS.gene34189:intron 30.0%
ATAAACTACCTGTGCATCAA+TGG - chr6.2:2744562-2744581 None:intergenic 35.0%
ATAACAACTATGTCGCACTT+TGG - chr6.2:2744004-2744023 None:intergenic 35.0%
ATTGTAGGTGTGTTCTACAA+AGG + chr6.2:2743272-2743291 MS.gene34189:CDS 35.0%
ATTGTCACAGATGACAAAGA+AGG + chr6.2:2743389-2743408 MS.gene34189:CDS 35.0%
CAACACATCCAACAAAATTG+GGG - chr6.2:2743319-2743338 None:intergenic 35.0%
CCAATTTCTTTCTCCAATTC+AGG - chr6.2:2743947-2743966 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG + chr6.2:2743944-2743963 MS.gene34189:CDS 35.0%
CGCTTTCTTAATTCTTTCCT+CGG - chr6.2:2743579-2743598 None:intergenic 35.0%
CTATGATCTTGAAGGAAAGA+CGG + chr6.2:2743823-2743842 MS.gene34189:CDS 35.0%
GGAGGAAAGAAGAAAATTGT+AGG + chr6.2:2743257-2743276 MS.gene34189:CDS 35.0%
TGATTGTTAACAATGCTCGT+GGG + chr6.2:2744221-2744240 MS.gene34189:CDS 35.0%
TTGATTGTTAACAATGCTCG+TGG + chr6.2:2744220-2744239 MS.gene34189:CDS 35.0%
! AATTTTCTTCTTTCCTCCAG+AGG - chr6.2:2743255-2743274 None:intergenic 35.0%
! ACTTTGGTAGCATTGTATCA+AGG - chr6.2:2743988-2744007 None:intergenic 35.0%
! AGAATCGCTAAGTTGAAGAA+AGG + chr6.2:2744193-2744212 MS.gene34189:CDS 35.0%
!!! TTACAGTTGCTTTTAACTGC+CGG + chr6.2:2743605-2743624 MS.gene34189:CDS 35.0%
AATGTGATCAGAACCAATGC+CGG - chr6.2:2743627-2743646 None:intergenic 40.0%
AATTCTTTCCTCGGTGACAT+AGG - chr6.2:2743570-2743589 None:intergenic 40.0%
ACATCCAACAAAATTGGGGT+TGG - chr6.2:2743315-2743334 None:intergenic 40.0%
ACTTAAGATGGAGCCTGAAT+TGG + chr6.2:2743931-2743950 MS.gene34189:CDS 40.0%
AGAAATTGGAGCTCAGTTTG+AGG + chr6.2:2743958-2743977 MS.gene34189:CDS 40.0%
AGATATCAGGACATGCAGAT+CGG - chr6.2:2743531-2743550 None:intergenic 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG - chr6.2:2743889-2743908 None:intergenic 40.0%
ATGGTGGTTCCAGAAATATG+AGG - chr6.2:2744543-2744562 None:intergenic 40.0%
CATAGAGCCTATGATCTTGA+AGG + chr6.2:2743815-2743834 MS.gene34189:CDS 40.0%
CGTCTTTCCTTCAAGATCAT+AGG - chr6.2:2743825-2743844 None:intergenic 40.0%
GAGAAAATGTAGTCGGTAGT+CGG - chr6.2:2744639-2744658 None:intergenic 40.0%
GATTGTTAACAATGCTCGTG+GGG + chr6.2:2744222-2744241 MS.gene34189:CDS 40.0%
GGGTGAAAAATATGCTTGAG+AGG + chr6.2:2744723-2744742 MS.gene34189:CDS 40.0%
GGTGAAATGGTGTAGATATC+AGG - chr6.2:2743544-2743563 None:intergenic 40.0%
TCCAGAAATATGAGGAGTCA+TGG - chr6.2:2744535-2744554 None:intergenic 40.0%
TGAGAATTCTCATTCTCGTG+AGG + chr6.2:2743732-2743751 MS.gene34189:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG + chr6.2:2744457-2744476 MS.gene34189:intron 40.0%
! TCGGGAAACTTTTACTCCAA+AGG + chr6.2:2743870-2743889 MS.gene34189:CDS 40.0%
! TTCACAATGTAGTGCTGTTC+AGG - chr6.2:2744770-2744789 None:intergenic 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG + chr6.2:2744734-2744753 MS.gene34189:CDS 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG + chr6.2:2744733-2744752 MS.gene34189:CDS 40.0%
AACTACCTGTGCATCAATGG+TGG - chr6.2:2744559-2744578 None:intergenic 45.0%
ACCAGCAACATTCCATTCTC+CGG - chr6.2:2743789-2743808 None:intergenic 45.0%
ACCTTGTCTTATCGGTGAGA+GGG - chr6.2:2744033-2744052 None:intergenic 45.0%
CACAGGAAGCAACGTAGTAT+CGG + chr6.2:2743691-2743710 MS.gene34189:CDS 45.0%
CAGCACTACATTGTGAAGCA+AGG + chr6.2:2744773-2744792 MS.gene34189:CDS 45.0%
CAGCTCCAAAAGATCATCCA+TGG + chr6.2:2744490-2744509 MS.gene34189:CDS 45.0%
CATTGTGAAGCAAGGCCAAT+TGG + chr6.2:2744781-2744800 MS.gene34189:CDS 45.0%
GACAAAGAAGGACCTGATTC+TGG + chr6.2:2743401-2743420 MS.gene34189:CDS 45.0%
GATATCAGGACATGCAGATC+GGG - chr6.2:2743530-2743549 None:intergenic 45.0%
GATCTTGAAGGAAAGACGGT+TGG + chr6.2:2743827-2743846 MS.gene34189:CDS 45.0%
GCCATGACTCCTCATATTTC+TGG + chr6.2:2744531-2744550 MS.gene34189:CDS 45.0%
GTCAGTTACGTTATGCTGCT+GGG + chr6.2:2744702-2744721 MS.gene34189:intron 45.0%
GTTGCTGATGCTTGTACTAG+TGG + chr6.2:2744265-2744284 MS.gene34189:CDS 45.0%
TACCTTGTCTTATCGGTGAG+AGG - chr6.2:2744034-2744053 None:intergenic 45.0%
TCACATTGATCTCAACGCTG+CGG + chr6.2:2743640-2743659 MS.gene34189:CDS 45.0%
TCAGTTACGTTATGCTGCTG+GGG + chr6.2:2744703-2744722 MS.gene34189:intron 45.0%
TGAAGGAAAGACGGTTGGAA+CGG + chr6.2:2743832-2743851 MS.gene34189:CDS 45.0%
TGAGGAGTCATGGCATGATT+AGG - chr6.2:2744525-2744544 None:intergenic 45.0%
TTTCTTGCCTGGTTACAAGC+AGG + chr6.2:2743757-2743776 MS.gene34189:CDS 45.0%
! GCATCCAACCCCAATTTTGT+TGG + chr6.2:2743308-2743327 MS.gene34189:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG - chr6.2:2744498-2744517 None:intergenic 45.0%
! TGTACTAGTGGACACATTGC+AGG + chr6.2:2744277-2744296 MS.gene34189:CDS 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG + chr6.2:2743329-2743348 MS.gene34189:CDS 45.0%
!! TTGCTTTTAACTGCCGGCAT+TGG + chr6.2:2743611-2743630 MS.gene34189:CDS 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG - chr6.2:2744492-2744511 None:intergenic 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG - chr6.2:2744485-2744504 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG - chr6.2:2744486-2744505 None:intergenic 45.0%
CAATGCTCGTGGGGCAATTA+TGG + chr6.2:2744231-2744250 MS.gene34189:CDS 50.0%
CCTTGTCTTATCGGTGAGAG+GGG - chr6.2:2744032-2744051 None:intergenic 50.0%
CTCGTGAGGAATTTCTTGCC+TGG + chr6.2:2743746-2743765 MS.gene34189:CDS 50.0%
GAGCATTAGGTATACGCGAG+TGG + chr6.2:2743342-2743361 MS.gene34189:CDS 50.0%
GCCAATTGGCAAGCCAATAC+CGG + chr6.2:2744795-2744814 MS.gene34189:CDS 50.0%
GGAATGTGCTTCTCGAGTTC+TGG - chr6.2:2743509-2743528 None:intergenic 50.0%
GGTCAGTTACGTTATGCTGC+TGG + chr6.2:2744701-2744720 MS.gene34189:intron 50.0%
GTGACATAGGCAGGGTGAAA+TGG - chr6.2:2743557-2743576 None:intergenic 50.0%
TGATTAGGCATGTAGCGCCA+TGG - chr6.2:2744510-2744529 None:intergenic 50.0%
TGGAACCACCATTGATGCAC+AGG + chr6.2:2744551-2744570 MS.gene34189:CDS 50.0%
TTTCCTCGGTGACATAGGCA+GGG - chr6.2:2743565-2743584 None:intergenic 50.0%
!! ACCGGTATTGGCTTGCCAAT+TGG - chr6.2:2744799-2744818 None:intergenic 50.0%
!! CAACGTAGTATCGGTTGCTG+AGG + chr6.2:2743700-2743719 MS.gene34189:CDS 50.0%
!! TGAGAGGCACTTTAAGGGTG+AGG + chr6.2:2744739-2744758 MS.gene34189:CDS 50.0%
CCCCTCTCACCGATAAGACA+AGG + chr6.2:2744029-2744048 MS.gene34189:CDS 55.0%
CGCGAGTGGCTTGAATCACA+AGG + chr6.2:2743356-2743375 MS.gene34189:CDS 55.0%
CTTTCCTCGGTGACATAGGC+AGG - chr6.2:2743566-2743585 None:intergenic 55.0%
GCAACAGCCTGCTTGTAACC+AGG - chr6.2:2743767-2743786 None:intergenic 55.0%
GCCGGAGAATGGAATGTTGC+TGG + chr6.2:2743785-2743804 MS.gene34189:CDS 55.0%
GGAAAGACGGTTGGAACGGT+TGG + chr6.2:2743836-2743855 MS.gene34189:CDS 55.0%
GGTTACAAGCAGGCTGTTGC+CGG + chr6.2:2743767-2743786 MS.gene34189:CDS 55.0%
TTAACCGTCGCAGAGGTCAC+AGG + chr6.2:2743674-2743693 MS.gene34189:CDS 55.0%
!! TGCTGGTTTAACCGTCGCAG+AGG + chr6.2:2743667-2743686 MS.gene34189:CDS 55.0%
!! TTGGAACGGTTGGTGCTGGA+CGG + chr6.2:2743846-2743865 MS.gene34189:CDS 55.0%
AGCAGGCTGTTGCCGGAGAA+TGG + chr6.2:2743774-2743793 MS.gene34189:CDS 60.0%
GCTTCCTGTGACCTCTGCGA+CGG - chr6.2:2743681-2743700 None:intergenic 60.0%
TCACCCTGCCTATGTCACCG+AGG + chr6.2:2743559-2743578 MS.gene34189:CDS 60.0%
! ACGGTTGGAACGGTTGGTGC+TGG + chr6.2:2743842-2743861 MS.gene34189:CDS 60.0%
!! ACGGTTGGTGCTGGACGGAT+CGG + chr6.2:2743851-2743870 MS.gene34189:CDS 60.0%
!! CGGTTGGTGCTGGACGGATC+GGG + chr6.2:2743852-2743871 MS.gene34189:CDS 65.0%
CTCAACGCTGCGGCTGCTGC+TGG + chr6.2:2743650-2743669 MS.gene34189:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 2743251 2744820 2743251 ID=MS.gene34189
chr6.2 mRNA 2743251 2744820 2743251 ID=MS.gene34189.t1;Parent=MS.gene34189
chr6.2 exon 2743251 2743422 2743251 ID=MS.gene34189.t1.exon1;Parent=MS.gene34189.t1
chr6.2 CDS 2743251 2743422 2743251 ID=cds.MS.gene34189.t1;Parent=MS.gene34189.t1
chr6.2 exon 2743510 2744050 2743510 ID=MS.gene34189.t1.exon2;Parent=MS.gene34189.t1
chr6.2 CDS 2743510 2744050 2743510 ID=cds.MS.gene34189.t1;Parent=MS.gene34189.t1
chr6.2 exon 2744174 2744298 2744174 ID=MS.gene34189.t1.exon3;Parent=MS.gene34189.t1
chr6.2 CDS 2744174 2744298 2744174 ID=cds.MS.gene34189.t1;Parent=MS.gene34189.t1
chr6.2 exon 2744460 2744572 2744460 ID=MS.gene34189.t1.exon4;Parent=MS.gene34189.t1
chr6.2 CDS 2744460 2744572 2744460 ID=cds.MS.gene34189.t1;Parent=MS.gene34189.t1
chr6.2 exon 2744707 2744820 2744707 ID=MS.gene34189.t1.exon5;Parent=MS.gene34189.t1
chr6.2 CDS 2744707 2744820 2744707 ID=cds.MS.gene34189.t1;Parent=MS.gene34189.t1
Gene Sequence

>MS.gene34189

GCCTCTGGAGGAAAGAAGAAAATTGTAGGTGTGTTCTACAAAGGCAATGAGAATGCTGCATCCAACCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGCTTGAATCACAAGGACATGAATACATTGTCACAGATGACAAAGAAGGACCTGATTCTGGTTAGAATTTTGACGAATTAATCGACCCTCTTTAAACTTTATCTTAAAAGTTTTTGGTTGCATTAACTTATGACTATCTGTTACCAGAACTCGAGAAGCACATTCCCGATCTGCATGTCCTGATATCTACACCATTTCACCCTGCCTATGTCACCGAGGAAAGAATTAAGAAAGCGAAGAATTTACAGTTGCTTTTAACTGCCGGCATTGGTTCTGATCACATTGATCTCAACGCTGCGGCTGCTGCTGGTTTAACCGTCGCAGAGGTCACAGGAAGCAACGTAGTATCGGTTGCTGAGGATGAGCTTATGAGAATTCTCATTCTCGTGAGGAATTTCTTGCCTGGTTACAAGCAGGCTGTTGCCGGAGAATGGAATGTTGCTGGTATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGGTTGGAACGGTTGGTGCTGGACGGATCGGGAAACTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCATGATAGACTTAAGATGGAGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGATGACCTTGATACAATGCTACCAAAGTGCGACATAGTTGTTATTAACACCCCTCTCACCGATAAGACAAGGTATAATTTAATACTATTATCGATCTATTAACGGTCTAGTTTACAAGGTTATCCATGTCCATTATTATGTAAACTATGAGTCATACCTAGCAATGAGAAAACTTTTTTCTTTTTGTGATTCAGAGGATTGTTTGACAAAAATAGAATCGCTAAGTTGAAGAAAGGCGTCTTGATTGTTAACAATGCTCGTGGGGCAATTATGGACACACAAGCAGTTGCTGATGCTTGTACTAGTGGACACATTGCAGGTAATTCTGAAATCAGCTGACAAAAAAAAAATTGTTTACGAACAGAACATAAAACGATGTTTCAAGTAATGTAAAACCTCGATTTCATTTATGTTTCTGAAAAAAATATGAAACTATGTTTGAACTTTGAAGTAATGTAACAGCTAAGTTTCATCTTATAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCTAATCATGCCATGACTCCTCATATTTCTGGAACCACCATTGATGCACAGGTAGTTTATTTTACTTTTTTTCTTGACATTAGCATACCTTTTTTCTTTAGCTAAGTTCATTGACCGACTACCGACTACATTTTCTCCATTTTTTTTGCGCAAATTACTGATATTGATAATTGAAACTTGGTCAGTTACGTTATGCTGCTGGGGTGAAAAATATGCTTGAGAGGCACTTTAAGGGTGAGGACTTTCCTGAACAGCACTACATTGTGAAGCAAGGCCAATTGGCAAGCCAATACCGGTGA
Protein sequence

>MS.gene34189.t1

ASGGKKKIVGVFYKGNENAASNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGPDSELEKHIPDLHVLISTPFHPAYVTEERIKKAKNLQLLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYKQAVAGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAQFEDDLDTMLPKCDIVVINTPLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACTSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKNMLERHFKGEDFPEQHYIVKQGQLASQYR