Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34510.t1 | XP_003595736.1 | 95.2 | 414 | 19 | 1 | 1 | 414 | 1 | 413 | 1.10E-187 | 666 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34510.t1 | O48716 | 36.4 | 327 | 193 | 7 | 66 | 382 | 97 | 418 | 9.5e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34510.t1 | G7IGQ9 | 95.2 | 414 | 19 | 1 | 1 | 414 | 1 | 413 | 8.2e-188 | 666.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063343 | MS.gene34510 | PPI |
| MS.gene049052 | MS.gene34510 | PPI |
| MS.gene45142 | MS.gene34510 | PPI |
| MS.gene015841 | MS.gene34510 | PPI |
| MS.gene66388 | MS.gene34510 | PPI |
| MS.gene001242 | MS.gene34510 | PPI |
| MS.gene030337 | MS.gene34510 | PPI |
| MS.gene20137 | MS.gene34510 | PPI |
| MS.gene75024 | MS.gene34510 | PPI |
| MS.gene049051 | MS.gene34510 | PPI |
| MS.gene05967 | MS.gene34510 | PPI |
| MS.gene58600 | MS.gene34510 | PPI |
| MS.gene027518 | MS.gene34510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34510.t1 | MTR_2g060070 | 97.343 | 414 | 10 | 1 | 1 | 414 | 1 | 413 | 0.0 | 822 |
| MS.gene34510.t1 | MTR_1g021590 | 40.805 | 348 | 181 | 10 | 48 | 382 | 96 | 431 | 6.71e-76 | 244 |
| MS.gene34510.t1 | MTR_5g018520 | 40.663 | 332 | 182 | 7 | 61 | 382 | 93 | 419 | 6.82e-75 | 241 |
| MS.gene34510.t1 | MTR_8g089650 | 39.420 | 345 | 192 | 8 | 52 | 380 | 83 | 426 | 1.05e-73 | 237 |
| MS.gene34510.t1 | MTR_4g068457 | 38.053 | 339 | 193 | 7 | 61 | 385 | 124 | 459 | 3.64e-71 | 232 |
| MS.gene34510.t1 | MTR_3g078380 | 37.084 | 391 | 204 | 17 | 32 | 383 | 25 | 412 | 3.70e-64 | 211 |
| MS.gene34510.t1 | MTR_5g035980 | 33.676 | 389 | 199 | 13 | 51 | 382 | 57 | 443 | 6.51e-64 | 212 |
| MS.gene34510.t1 | MTR_4g104410 | 36.043 | 369 | 210 | 10 | 29 | 382 | 6 | 363 | 6.77e-61 | 201 |
| MS.gene34510.t1 | MTR_4g106480 | 34.795 | 342 | 195 | 12 | 68 | 383 | 60 | 399 | 4.10e-59 | 198 |
| MS.gene34510.t1 | MTR_3g110185 | 32.370 | 346 | 206 | 11 | 58 | 387 | 81 | 414 | 1.12e-48 | 177 |
| MS.gene34510.t1 | MTR_2g101410 | 28.402 | 338 | 206 | 11 | 66 | 382 | 85 | 407 | 3.39e-36 | 137 |
| MS.gene34510.t1 | MTR_3g088545 | 22.701 | 348 | 209 | 9 | 47 | 380 | 68 | 369 | 1.43e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34510.t1 | AT3G51930 | 67.775 | 391 | 97 | 7 | 23 | 396 | 28 | 406 | 9.33e-180 | 507 |
| MS.gene34510.t1 | AT2G26490 | 43.902 | 328 | 167 | 10 | 66 | 382 | 97 | 418 | 5.88e-80 | 254 |
| MS.gene34510.t1 | AT1G24530 | 40.000 | 345 | 194 | 8 | 47 | 382 | 63 | 403 | 1.98e-75 | 241 |
| MS.gene34510.t1 | AT1G49450 | 39.186 | 393 | 215 | 10 | 13 | 385 | 81 | 469 | 1.83e-73 | 237 |
| MS.gene34510.t1 | AT1G47610 | 40.060 | 332 | 182 | 8 | 66 | 385 | 25 | 351 | 1.37e-72 | 231 |
| MS.gene34510.t1 | AT3G18950 | 37.626 | 396 | 221 | 12 | 12 | 390 | 86 | 472 | 4.97e-68 | 223 |
| MS.gene34510.t1 | AT3G50390 | 37.822 | 349 | 200 | 9 | 58 | 393 | 91 | 435 | 1.54e-67 | 222 |
| MS.gene34510.t1 | AT4G34380 | 39.403 | 335 | 181 | 9 | 66 | 382 | 126 | 456 | 2.95e-66 | 219 |
| MS.gene34510.t1 | AT1G24130 | 37.921 | 356 | 191 | 12 | 52 | 380 | 56 | 408 | 8.30e-66 | 216 |
| MS.gene34510.t1 | AT5G50120 | 35.000 | 360 | 200 | 12 | 55 | 382 | 27 | 384 | 5.49e-59 | 197 |
| MS.gene34510.t1 | AT4G02730 | 23.362 | 351 | 207 | 13 | 42 | 380 | 29 | 329 | 1.04e-13 | 72.0 |
| MS.gene34510.t1 | AT1G21651 | 22.956 | 318 | 213 | 7 | 64 | 381 | 523 | 808 | 3.76e-12 | 68.6 |
| MS.gene34510.t1 | AT1G21650 | 23.308 | 266 | 177 | 4 | 64 | 329 | 523 | 761 | 2.69e-11 | 66.2 |
Find 82 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGGGTTGATTTATTC+AGG | 0.158969 | 4.4:+61777480 | MS.gene34510:CDS |
| TCCAACAACAAAAGACTATT+TGG | 0.161852 | 4.4:+61777362 | MS.gene34510:CDS |
| TGTAAAGTTGGGGTTATAAT+TGG | 0.191734 | 4.4:+61777939 | MS.gene34510:CDS |
| TATGGCAACAACCAGATTTA+AGG | 0.199159 | 4.4:+61777190 | MS.gene34510:CDS |
| GATGATGGAAAATGGGTTTA+TGG | 0.200530 | 4.4:+61777735 | MS.gene34510:CDS |
| CAGATAAAAGTATAGGTATT+TGG | 0.236613 | 4.4:+61777892 | MS.gene34510:CDS |
| TCTTGTTTGGTTGTTCATAA+TGG | 0.237673 | 4.4:+61777465 | MS.gene34510:CDS |
| TTGTTTCTGATGATGGAAAA+TGG | 0.240075 | 4.4:+61777727 | MS.gene34510:CDS |
| GCACATGATGATGCTATTAA+TGG | 0.257444 | 4.4:+61777567 | MS.gene34510:CDS |
| GTCAAAGCACTAGCAACTTT+TGG | 0.264942 | 4.4:+61777246 | MS.gene34510:CDS |
| CTTGTTTGGTTGTTCATAAT+GGG | 0.289739 | 4.4:+61777466 | MS.gene34510:CDS |
| TTGGTAAAATTTGTAAAGTT+GGG | 0.317130 | 4.4:+61777928 | MS.gene34510:CDS |
| GGGATAAGACACTTAAAGTT+TGG | 0.330304 | 4.4:+61777508 | MS.gene34510:CDS |
| TTCGCAAACAACCTTAAATC+TGG | 0.338735 | 4.4:-61777201 | None:intergenic |
| GAAGTGTTTGGAATCTATTA+AGG | 0.342710 | 4.4:+61777545 | MS.gene34510:CDS |
| CCAACAACAAAAGACTATTT+GGG | 0.358717 | 4.4:+61777363 | MS.gene34510:CDS |
| TTTGGTAAAATTTGTAAAGT+TGG | 0.360311 | 4.4:+61777927 | MS.gene34510:CDS |
| TGCTGATAGCATTTCTTGTT+TGG | 0.374831 | 4.4:+61777452 | MS.gene34510:CDS |
| TGTTTCTGATTTGAAGTGTT+TGG | 0.377823 | 4.4:+61777533 | MS.gene34510:CDS |
| TTAAGGTTGTTTGCGAAATT+CGG | 0.381571 | 4.4:+61777207 | MS.gene34510:CDS |
| TGATGATGGAGTAGAAAGTA+TGG | 0.391324 | 4.4:-61776947 | None:intergenic |
| TCTGTTGTTGTTTCTGATGA+TGG | 0.393240 | 4.4:+61777720 | MS.gene34510:CDS |
| TTGATAGAAGTGTGAGAGTT+TGG | 0.399809 | 4.4:+61778042 | MS.gene34510:CDS |
| ATCAGTTTCTCATAGATCAT+TGG | 0.403558 | 4.4:+61777077 | MS.gene34510:CDS |
| TTCTGCAGATGGGAAAATTA+AGG | 0.406190 | 4.4:+61777623 | MS.gene34510:CDS |
| GCTTCATCATCTAATAGAAT+TGG | 0.416552 | 4.4:+61777990 | MS.gene34510:CDS |
| GCGAAATTCGGTCAAGGCGA+TGG | 0.421578 | 4.4:+61777219 | MS.gene34510:CDS |
| TTTGAAACGAGGGTATTCAT+TGG | 0.441812 | 4.4:-61776922 | None:intergenic |
| CAATATGAACTCACCACATA+AGG | 0.445391 | 4.4:-61777139 | None:intergenic |
| TTCGTGTATGGAAAGTTTCT+AGG | 0.446612 | 4.4:+61777304 | MS.gene34510:CDS |
| GGTTGATTTATTCAGGGTCA+TGG | 0.455422 | 4.4:+61777487 | MS.gene34510:CDS |
| AGGGCAAAGACATCATAGTA+TGG | 0.455652 | 4.4:+61777172 | MS.gene34510:CDS |
| TGTTTCTGATGATGGAAAAT+GGG | 0.456175 | 4.4:+61777728 | MS.gene34510:CDS |
| GTTTATTCTGCTTCTGCAGA+TGG | 0.457417 | 4.4:+61777612 | MS.gene34510:CDS |
| ATTTGGAAAAGAGAGCCTTT+TGG | 0.468370 | 4.4:+61777909 | MS.gene34510:CDS |
| GTTTCATGTTTAGCCTTATG+TGG | 0.477781 | 4.4:+61777126 | MS.gene34510:CDS |
| GTTTATGGAGGTGGTTCTGA+TGG | 0.480581 | 4.4:+61777750 | MS.gene34510:CDS |
| TTGCTTCTACAACTTGATGA+TGG | 0.490998 | 4.4:-61776961 | None:intergenic |
| GTTCATATTGAGTGCATCAC+AGG | 0.491312 | 4.4:+61777152 | MS.gene34510:CDS |
| GATTTGCATGGTGGTGGTGG+TGG | 0.495012 | 4.4:-61777057 | None:intergenic |
| TGGTAAAATTTGTAAAGTTG+GGG | 0.503634 | 4.4:+61777929 | MS.gene34510:CDS |
| GGAAAATGGGTTTATGGAGG+TGG | 0.504695 | 4.4:+61777741 | MS.gene34510:CDS |
| GGATCAGCAGATAAAAGTAT+AGG | 0.505453 | 4.4:+61777885 | MS.gene34510:CDS |
| ATAATGGGTTGATTTATTCA+GGG | 0.512775 | 4.4:+61777481 | MS.gene34510:CDS |
| ATTAAGGCATGGGGAAAACA+AGG | 0.514895 | 4.4:+61777639 | MS.gene34510:CDS |
| AAGATAGCAAGATTCGTGTA+TGG | 0.517852 | 4.4:+61777292 | MS.gene34510:CDS |
| ATGGGTTGGTAGCATGCAAA+GGG | 0.520634 | 4.4:+61777586 | MS.gene34510:CDS |
| GTTGATTTATTCAGGGTCAT+GGG | 0.520892 | 4.4:+61777488 | MS.gene34510:CDS |
| TGAAACAAAGGCTCATGAAA+TGG | 0.521270 | 4.4:+61777821 | MS.gene34510:CDS |
| CACATGATGATGCTATTAAT+GGG | 0.522119 | 4.4:+61777568 | MS.gene34510:CDS |
| TTTATTCTGCTTCTGCAGAT+GGG | 0.532550 | 4.4:+61777613 | MS.gene34510:CDS |
| GGAGACATCACAAGAGGTTG+TGG | 0.537342 | 4.4:+61777421 | MS.gene34510:CDS |
| AAAGTATGATGAAACAAAAG+TGG | 0.538411 | 4.4:+61778073 | MS.gene34510:CDS |
| AAACTCTCACACTTCTATCA+AGG | 0.539419 | 4.4:-61778040 | None:intergenic |
| GGGGTTATAATTGGACATGA+AGG | 0.541474 | 4.4:+61777948 | MS.gene34510:CDS |
| GAAAATGGTTTGTGAAACAA+AGG | 0.545867 | 4.4:+61777809 | MS.gene34510:CDS |
| ACTGATTTGCATGGTGGTGG+TGG | 0.550762 | 4.4:-61777060 | None:intergenic |
| AGATGGGAAAATTAAGGCAT+GGG | 0.554116 | 4.4:+61777629 | MS.gene34510:CDS |
| TCATCATCTAATAGAATTGG+TGG | 0.559788 | 4.4:+61777993 | MS.gene34510:CDS |
| TAGAAGTGTGAGAGTTTGGT+GGG | 0.560073 | 4.4:+61778046 | MS.gene34510:CDS |
| TTTGTGTATGTGTTTGATTG+GGG | 0.561324 | 4.4:+61777848 | MS.gene34510:CDS |
| TCATCTAATAGAATTGGTGG+TGG | 0.562304 | 4.4:+61777996 | MS.gene34510:CDS |
| CAGATGGGAAAATTAAGGCA+TGG | 0.562592 | 4.4:+61777628 | MS.gene34510:CDS |
| AAAGTAATTATGTTCAAACT+AGG | 0.570479 | 4.4:+61777400 | MS.gene34510:CDS |
| ATAGAAGTGTGAGAGTTTGG+TGG | 0.573934 | 4.4:+61778045 | MS.gene34510:CDS |
| GAAGCTTGTAAACACTTCAC+AGG | 0.574638 | 4.4:-61777972 | None:intergenic |
| TCATCAAGTTGTAGAAGCAA+TGG | 0.574974 | 4.4:+61776964 | MS.gene34510:CDS |
| AATGGGTTGGTAGCATGCAA+AGG | 0.575385 | 4.4:+61777585 | MS.gene34510:CDS |
| TTGTTTGCGAAATTCGGTCA+AGG | 0.581090 | 4.4:+61777213 | MS.gene34510:CDS |
| TGATGATGCTATTAATGGGT+TGG | 0.609569 | 4.4:+61777572 | MS.gene34510:CDS |
| TTGTGTATGTGTTTGATTGG+GGG | 0.615281 | 4.4:+61777849 | MS.gene34510:CDS |
| TTCATATTGAGTGCATCACA+GGG | 0.620924 | 4.4:+61777153 | MS.gene34510:CDS |
| CAACAACAAAAGACTATTTG+GGG | 0.631861 | 4.4:+61777364 | MS.gene34510:CDS |
| GAAACTGATTTGCATGGTGG+TGG | 0.634072 | 4.4:-61777063 | None:intergenic |
| GTATGATGAAACAAAAGTGG+AGG | 0.645051 | 4.4:+61778076 | MS.gene34510:CDS |
| CTATGAGAAACTGATTTGCA+TGG | 0.653319 | 4.4:-61777069 | None:intergenic |
| GATGGAAAATGGGTTTATGG+AGG | 0.657035 | 4.4:+61777738 | MS.gene34510:CDS |
| GATGGGAAAATTAAGGCATG+GGG | 0.658308 | 4.4:+61777630 | MS.gene34510:CDS |
| GCGATTCTTTCAGAACACGT+TGG | 0.661081 | 4.4:+61777099 | MS.gene34510:CDS |
| AAACTAGGAGACATCACAAG+AGG | 0.664661 | 4.4:+61777415 | MS.gene34510:CDS |
| TTAAGGCATGGGGAAAACAA+GGG | 0.674587 | 4.4:+61777640 | MS.gene34510:CDS |
| TGAGAAACTGATTTGCATGG+TGG | 0.728963 | 4.4:-61777066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTGCATACTTTGAA+AGG | + | chr4.4:61777663-61777682 | MS.gene34510:CDS | 20.0% |
| !! | AAAGTAATTATGTTCAAACT+AGG | + | chr4.4:61777400-61777419 | MS.gene34510:CDS | 20.0% |
| !! | TTGGTAAAATTTGTAAAGTT+GGG | + | chr4.4:61777928-61777947 | MS.gene34510:CDS | 20.0% |
| !! | TTTGGTAAAATTTGTAAAGT+TGG | + | chr4.4:61777927-61777946 | MS.gene34510:CDS | 20.0% |
| !!! | AAATTTTGAGAATTGGAAAA+TGG | + | chr4.4:61777794-61777813 | MS.gene34510:CDS | 20.0% |
| !!! | ACTTTACAAATTTTACCAAA+AGG | - | chr4.4:61777927-61777946 | None:intergenic | 20.0% |
| !!! | ATGAAAGAAATTTTGAGAAT+TGG | + | chr4.4:61777787-61777806 | MS.gene34510:CDS | 20.0% |
| ! | AAAGTATGATGAAACAAAAG+TGG | + | chr4.4:61778073-61778092 | MS.gene34510:CDS | 25.0% |
| ! | TGGTAAAATTTGTAAAGTTG+GGG | + | chr4.4:61777929-61777948 | MS.gene34510:CDS | 25.0% |
| !! | CAGATAAAAGTATAGGTATT+TGG | + | chr4.4:61777892-61777911 | MS.gene34510:CDS | 25.0% |
| !! | TTTTGTGTATGTGTTTGATT+GGG | + | chr4.4:61777847-61777866 | MS.gene34510:CDS | 25.0% |
| !!! | ACTTTTGTTTCATCATACTT+TGG | - | chr4.4:61778074-61778093 | None:intergenic | 25.0% |
| !!! | ATAATGGGTTGATTTATTCA+GGG | + | chr4.4:61777481-61777500 | MS.gene34510:CDS | 25.0% |
| ATCAGTTTCTCATAGATCAT+TGG | + | chr4.4:61777077-61777096 | MS.gene34510:CDS | 30.0% | |
| CAACAACAAAAGACTATTTG+GGG | + | chr4.4:61777364-61777383 | MS.gene34510:CDS | 30.0% | |
| CCAACAACAAAAGACTATTT+GGG | + | chr4.4:61777363-61777382 | MS.gene34510:CDS | 30.0% | |
| CTTGTTTGGTTGTTCATAAT+GGG | + | chr4.4:61777466-61777485 | MS.gene34510:CDS | 30.0% | |
| GCTTCATCATCTAATAGAAT+TGG | + | chr4.4:61777990-61778009 | MS.gene34510:CDS | 30.0% | |
| TCATCATCTAATAGAATTGG+TGG | + | chr4.4:61777993-61778012 | MS.gene34510:CDS | 30.0% | |
| TCCAACAACAAAAGACTATT+TGG | + | chr4.4:61777362-61777381 | MS.gene34510:CDS | 30.0% | |
| TGTAAAGTTGGGGTTATAAT+TGG | + | chr4.4:61777939-61777958 | MS.gene34510:CDS | 30.0% | |
| TTAAGGTTGTTTGCGAAATT+CGG | + | chr4.4:61777207-61777226 | MS.gene34510:CDS | 30.0% | |
| TTTGTGTATGTGTTTGATTG+GGG | + | chr4.4:61777848-61777867 | MS.gene34510:CDS | 30.0% | |
| ! | CACATGATGATGCTATTAAT+GGG | + | chr4.4:61777568-61777587 | MS.gene34510:CDS | 30.0% |
| ! | GAAAATGGTTTGTGAAACAA+AGG | + | chr4.4:61777809-61777828 | MS.gene34510:CDS | 30.0% |
| ! | GAAGTGTTTGGAATCTATTA+AGG | + | chr4.4:61777545-61777564 | MS.gene34510:CDS | 30.0% |
| ! | GTTTTGTGTATGTGTTTGAT+TGG | + | chr4.4:61777846-61777865 | MS.gene34510:CDS | 30.0% |
| ! | TCTTGTTTGGTTGTTCATAA+TGG | + | chr4.4:61777465-61777484 | MS.gene34510:CDS | 30.0% |
| ! | TGTTTCTGATTTGAAGTGTT+TGG | + | chr4.4:61777533-61777552 | MS.gene34510:CDS | 30.0% |
| !! | CATAATGGGTTGATTTATTC+AGG | + | chr4.4:61777480-61777499 | MS.gene34510:CDS | 30.0% |
| !! | GTGGATTTTTGTTGTATAGT+GGG | + | chr4.4:61778015-61778034 | MS.gene34510:CDS | 30.0% |
| !! | TGTTTCTGATGATGGAAAAT+GGG | + | chr4.4:61777728-61777747 | MS.gene34510:CDS | 30.0% |
| !! | TTGTTTCTGATGATGGAAAA+TGG | + | chr4.4:61777727-61777746 | MS.gene34510:CDS | 30.0% |
| !!! | AAAGTATGGATTTTGAAACG+AGG | - | chr4.4:61776936-61776955 | None:intergenic | 30.0% |
| !!! | AAGTATGGATTTTGAAACGA+GGG | - | chr4.4:61776935-61776954 | None:intergenic | 30.0% |
| !!! | ACTTTGAAAGGTGTTTTAGA+GGG | + | chr4.4:61777675-61777694 | MS.gene34510:CDS | 30.0% |
| !!! | TACTTTGAAAGGTGTTTTAG+AGG | + | chr4.4:61777674-61777693 | MS.gene34510:CDS | 30.0% |
| AAACTCTCACACTTCTATCA+AGG | - | chr4.4:61778043-61778062 | None:intergenic | 35.0% | |
| AAGATAGCAAGATTCGTGTA+TGG | + | chr4.4:61777292-61777311 | MS.gene34510:CDS | 35.0% | |
| AGATGGGAAAATTAAGGCAT+GGG | + | chr4.4:61777629-61777648 | MS.gene34510:CDS | 35.0% | |
| CAATATGAACTCACCACATA+AGG | - | chr4.4:61777142-61777161 | None:intergenic | 35.0% | |
| GGGATAAGACACTTAAAGTT+TGG | + | chr4.4:61777508-61777527 | MS.gene34510:CDS | 35.0% | |
| GTATGATGAAACAAAAGTGG+AGG | + | chr4.4:61778076-61778095 | MS.gene34510:CDS | 35.0% | |
| TATGGCAACAACCAGATTTA+AGG | + | chr4.4:61777190-61777209 | MS.gene34510:CDS | 35.0% | |
| TCATCTAATAGAATTGGTGG+TGG | + | chr4.4:61777996-61778015 | MS.gene34510:CDS | 35.0% | |
| TGAAACAAAGGCTCATGAAA+TGG | + | chr4.4:61777821-61777840 | MS.gene34510:CDS | 35.0% | |
| TGCTGATAGCATTTCTTGTT+TGG | + | chr4.4:61777452-61777471 | MS.gene34510:CDS | 35.0% | |
| TTCATATTGAGTGCATCACA+GGG | + | chr4.4:61777153-61777172 | MS.gene34510:CDS | 35.0% | |
| TTCGCAAACAACCTTAAATC+TGG | - | chr4.4:61777204-61777223 | None:intergenic | 35.0% | |
| TTCGTGTATGGAAAGTTTCT+AGG | + | chr4.4:61777304-61777323 | MS.gene34510:CDS | 35.0% | |
| TTCTGCAGATGGGAAAATTA+AGG | + | chr4.4:61777623-61777642 | MS.gene34510:CDS | 35.0% | |
| TTGCTTCTACAACTTGATGA+TGG | - | chr4.4:61776964-61776983 | None:intergenic | 35.0% | |
| TTGTGTATGTGTTTGATTGG+GGG | + | chr4.4:61777849-61777868 | MS.gene34510:CDS | 35.0% | |
| TTTATTCTGCTTCTGCAGAT+GGG | + | chr4.4:61777613-61777632 | MS.gene34510:CDS | 35.0% | |
| ! | ATTTGGAAAAGAGAGCCTTT+TGG | + | chr4.4:61777909-61777928 | MS.gene34510:CDS | 35.0% |
| ! | GCACATGATGATGCTATTAA+TGG | + | chr4.4:61777567-61777586 | MS.gene34510:CDS | 35.0% |
| ! | GGATCAGCAGATAAAAGTAT+AGG | + | chr4.4:61777885-61777904 | MS.gene34510:CDS | 35.0% |
| ! | GTTGATTTATTCAGGGTCAT+GGG | + | chr4.4:61777488-61777507 | MS.gene34510:CDS | 35.0% |
| ! | TCATCAAGTTGTAGAAGCAA+TGG | + | chr4.4:61776964-61776983 | MS.gene34510:CDS | 35.0% |
| ! | TGATGATGCTATTAATGGGT+TGG | + | chr4.4:61777572-61777591 | MS.gene34510:CDS | 35.0% |
| ! | TTGATAGAAGTGTGAGAGTT+TGG | + | chr4.4:61778042-61778061 | MS.gene34510:CDS | 35.0% |
| !! | CCCAAATAGTCTTTTGTTGT+TGG | - | chr4.4:61777366-61777385 | None:intergenic | 35.0% |
| !! | CTATGAGAAACTGATTTGCA+TGG | - | chr4.4:61777072-61777091 | None:intergenic | 35.0% |
| !! | GATGATGGAAAATGGGTTTA+TGG | + | chr4.4:61777735-61777754 | MS.gene34510:CDS | 35.0% |
| !! | GGTGGATTTTTGTTGTATAG+TGG | + | chr4.4:61778014-61778033 | MS.gene34510:CDS | 35.0% |
| !! | GTTTCATGTTTAGCCTTATG+TGG | + | chr4.4:61777126-61777145 | MS.gene34510:CDS | 35.0% |
| !! | TCTGTTGTTGTTTCTGATGA+TGG | + | chr4.4:61777720-61777739 | MS.gene34510:CDS | 35.0% |
| !! | TGATGATGGAGTAGAAAGTA+TGG | - | chr4.4:61776950-61776969 | None:intergenic | 35.0% |
| AAACTAGGAGACATCACAAG+AGG | + | chr4.4:61777415-61777434 | MS.gene34510:CDS | 40.0% | |
| AGGGCAAAGACATCATAGTA+TGG | + | chr4.4:61777172-61777191 | MS.gene34510:CDS | 40.0% | |
| ATTAAGGCATGGGGAAAACA+AGG | + | chr4.4:61777639-61777658 | MS.gene34510:CDS | 40.0% | |
| CAGATGGGAAAATTAAGGCA+TGG | + | chr4.4:61777628-61777647 | MS.gene34510:CDS | 40.0% | |
| GAAGCTTGTAAACACTTCAC+AGG | - | chr4.4:61777975-61777994 | None:intergenic | 40.0% | |
| GATGGGAAAATTAAGGCATG+GGG | + | chr4.4:61777630-61777649 | MS.gene34510:CDS | 40.0% | |
| GGGGTTATAATTGGACATGA+AGG | + | chr4.4:61777948-61777967 | MS.gene34510:CDS | 40.0% | |
| GTTCATATTGAGTGCATCAC+AGG | + | chr4.4:61777152-61777171 | MS.gene34510:CDS | 40.0% | |
| GTTTATTCTGCTTCTGCAGA+TGG | + | chr4.4:61777612-61777631 | MS.gene34510:CDS | 40.0% | |
| TTAAGGCATGGGGAAAACAA+GGG | + | chr4.4:61777640-61777659 | MS.gene34510:CDS | 40.0% | |
| TTGTTTGCGAAATTCGGTCA+AGG | + | chr4.4:61777213-61777232 | MS.gene34510:CDS | 40.0% | |
| ! | ATAGAAGTGTGAGAGTTTGG+TGG | + | chr4.4:61778045-61778064 | MS.gene34510:CDS | 40.0% |
| ! | GATGGAAAATGGGTTTATGG+AGG | + | chr4.4:61777738-61777757 | MS.gene34510:CDS | 40.0% |
| ! | GGTTGATTTATTCAGGGTCA+TGG | + | chr4.4:61777487-61777506 | MS.gene34510:CDS | 40.0% |
| ! | TAGAAGTGTGAGAGTTTGGT+GGG | + | chr4.4:61778046-61778065 | MS.gene34510:CDS | 40.0% |
| !! | GTCAAAGCACTAGCAACTTT+TGG | + | chr4.4:61777246-61777265 | MS.gene34510:CDS | 40.0% |
| !! | TGAGAAACTGATTTGCATGG+TGG | - | chr4.4:61777069-61777088 | None:intergenic | 40.0% |
| GCGATTCTTTCAGAACACGT+TGG | + | chr4.4:61777099-61777118 | MS.gene34510:CDS | 45.0% | |
| ! | GGAAAATGGGTTTATGGAGG+TGG | + | chr4.4:61777741-61777760 | MS.gene34510:CDS | 45.0% |
| !! | AATGGGTTGGTAGCATGCAA+AGG | + | chr4.4:61777585-61777604 | MS.gene34510:CDS | 45.0% |
| !! | ATGGGTTGGTAGCATGCAAA+GGG | + | chr4.4:61777586-61777605 | MS.gene34510:CDS | 45.0% |
| !! | GAAACTGATTTGCATGGTGG+TGG | - | chr4.4:61777066-61777085 | None:intergenic | 45.0% |
| !! | GTTTATGGAGGTGGTTCTGA+TGG | + | chr4.4:61777750-61777769 | MS.gene34510:CDS | 45.0% |
| !!! | ATTGGGGGTTTTTTGTGCAC+AGG | + | chr4.4:61777864-61777883 | MS.gene34510:CDS | 45.0% |
| GGAGACATCACAAGAGGTTG+TGG | + | chr4.4:61777421-61777440 | MS.gene34510:CDS | 50.0% | |
| !! | ACTGATTTGCATGGTGGTGG+TGG | - | chr4.4:61777063-61777082 | None:intergenic | 50.0% |
| GCGAAATTCGGTCAAGGCGA+TGG | + | chr4.4:61777219-61777238 | MS.gene34510:CDS | 55.0% | |
| !! | GATTTGCATGGTGGTGGTGG+TGG | - | chr4.4:61777060-61777079 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 61776925 | 61778169 | 61776925 | ID=MS.gene34510 |
| chr4.4 | mRNA | 61776925 | 61778169 | 61776925 | ID=MS.gene34510.t1;Parent=MS.gene34510 |
| chr4.4 | exon | 61776925 | 61778169 | 61776925 | ID=MS.gene34510.t1.exon1;Parent=MS.gene34510.t1 |
| chr4.4 | CDS | 61776925 | 61778169 | 61776925 | ID=cds.MS.gene34510.t1;Parent=MS.gene34510.t1 |
| Gene Sequence |
| Protein sequence |
