Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34575.t1 | XP_003595736.1 | 94.4 | 414 | 22 | 1 | 1 | 414 | 1 | 413 | 1.50E-187 | 665.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34575.t1 | O48716 | 34.1 | 372 | 225 | 8 | 21 | 382 | 57 | 418 | 8.0e-33 | 142.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34575.t1 | G7IGQ9 | 94.4 | 414 | 22 | 1 | 1 | 414 | 1 | 413 | 1.1e-187 | 665.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34575 | MS.gene05967 | PPI |
| MS.gene34575 | MS.gene66388 | PPI |
| MS.gene34575 | MS.gene049051 | PPI |
| MS.gene34575 | MS.gene015841 | PPI |
| MS.gene34575 | MS.gene20137 | PPI |
| MS.gene34575 | MS.gene45142 | PPI |
| MS.gene34575 | MS.gene063343 | PPI |
| MS.gene34575 | MS.gene049052 | PPI |
| MS.gene34575 | MS.gene75024 | PPI |
| MS.gene34575 | MS.gene030337 | PPI |
| MS.gene34575 | MS.gene58600 | PPI |
| MS.gene34575 | MS.gene027518 | PPI |
| MS.gene34575 | MS.gene001242 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34575.t1 | MTR_2g060070 | 97.585 | 414 | 9 | 1 | 1 | 414 | 1 | 413 | 0.0 | 826 |
| MS.gene34575.t1 | MTR_1g021590 | 40.113 | 354 | 186 | 10 | 42 | 382 | 91 | 431 | 6.36e-76 | 244 |
| MS.gene34575.t1 | MTR_5g018520 | 40.663 | 332 | 182 | 7 | 61 | 382 | 93 | 419 | 5.51e-75 | 241 |
| MS.gene34575.t1 | MTR_8g089650 | 38.235 | 374 | 201 | 10 | 33 | 380 | 57 | 426 | 7.40e-74 | 238 |
| MS.gene34575.t1 | MTR_4g068457 | 38.053 | 339 | 193 | 7 | 61 | 385 | 124 | 459 | 3.68e-71 | 232 |
| MS.gene34575.t1 | MTR_3g078380 | 37.760 | 384 | 201 | 16 | 34 | 383 | 33 | 412 | 8.28e-65 | 213 |
| MS.gene34575.t1 | MTR_5g035980 | 33.676 | 389 | 199 | 13 | 51 | 382 | 57 | 443 | 4.49e-64 | 212 |
| MS.gene34575.t1 | MTR_4g104410 | 36.415 | 357 | 206 | 9 | 41 | 382 | 13 | 363 | 2.99e-61 | 202 |
| MS.gene34575.t1 | MTR_4g106480 | 34.795 | 342 | 195 | 12 | 68 | 383 | 60 | 399 | 2.80e-59 | 198 |
| MS.gene34575.t1 | MTR_3g110185 | 32.370 | 346 | 206 | 11 | 58 | 387 | 81 | 414 | 1.18e-48 | 177 |
| MS.gene34575.t1 | MTR_2g101410 | 28.698 | 338 | 205 | 11 | 66 | 382 | 85 | 407 | 2.74e-36 | 138 |
| MS.gene34575.t1 | MTR_3g088545 | 23.793 | 290 | 182 | 7 | 45 | 329 | 68 | 323 | 9.61e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34575.t1 | AT3G51930 | 67.775 | 391 | 97 | 7 | 23 | 396 | 28 | 406 | 7.41e-180 | 507 |
| MS.gene34575.t1 | AT2G26490 | 43.902 | 328 | 167 | 10 | 66 | 382 | 97 | 418 | 4.36e-80 | 254 |
| MS.gene34575.t1 | AT1G24530 | 38.136 | 354 | 199 | 8 | 45 | 382 | 54 | 403 | 1.74e-75 | 241 |
| MS.gene34575.t1 | AT1G49450 | 38.346 | 399 | 210 | 11 | 13 | 385 | 81 | 469 | 6.92e-73 | 236 |
| MS.gene34575.t1 | AT1G47610 | 40.060 | 332 | 182 | 8 | 66 | 385 | 25 | 351 | 8.18e-73 | 232 |
| MS.gene34575.t1 | AT3G50390 | 37.822 | 349 | 200 | 9 | 58 | 393 | 91 | 435 | 1.95e-67 | 221 |
| MS.gene34575.t1 | AT3G18950 | 40.643 | 342 | 178 | 11 | 66 | 390 | 139 | 472 | 5.70e-67 | 221 |
| MS.gene34575.t1 | AT4G34380 | 39.403 | 335 | 181 | 9 | 66 | 382 | 126 | 456 | 3.49e-66 | 219 |
| MS.gene34575.t1 | AT1G24130 | 38.483 | 356 | 189 | 13 | 52 | 380 | 56 | 408 | 8.30e-66 | 216 |
| MS.gene34575.t1 | AT5G50120 | 35.000 | 360 | 200 | 12 | 55 | 382 | 27 | 384 | 5.72e-59 | 197 |
| MS.gene34575.t1 | AT4G02730 | 23.373 | 338 | 206 | 12 | 55 | 380 | 33 | 329 | 1.33e-13 | 72.0 |
| MS.gene34575.t1 | AT1G21651 | 22.956 | 318 | 213 | 7 | 64 | 381 | 523 | 808 | 4.49e-12 | 68.6 |
| MS.gene34575.t1 | AT1G21650 | 23.308 | 266 | 177 | 4 | 64 | 329 | 523 | 761 | 2.99e-11 | 66.2 |
Find 81 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAATGGTTTGATTTATTC+AGG | 0.146599 | 4.3:+58720687 | MS.gene34575:CDS |
| TCCAACAACAAAAGACTATT+TGG | 0.161852 | 4.3:+58720569 | MS.gene34575:CDS |
| TGTAAAGTTGGGGTTATAAT+TGG | 0.191734 | 4.3:+58721146 | MS.gene34575:CDS |
| TATGGCAACAACCAGATTTA+AGG | 0.199159 | 4.3:+58720397 | MS.gene34575:CDS |
| GATGATGGAAAATGGGTTTA+TGG | 0.200530 | 4.3:+58720942 | MS.gene34575:CDS |
| CAGATAAAAGTATAGGTATT+TGG | 0.236613 | 4.3:+58721099 | MS.gene34575:CDS |
| TTGTTTCTGATGATGGAAAA+TGG | 0.240075 | 4.3:+58720934 | MS.gene34575:CDS |
| GCACATGATGATGCTATTAA+TGG | 0.257444 | 4.3:+58720774 | MS.gene34575:CDS |
| GTCAAAGCACTAGCAACTTT+TGG | 0.264942 | 4.3:+58720453 | MS.gene34575:CDS |
| TCTTGTTTGGTTGTTCATAA+TGG | 0.291146 | 4.3:+58720672 | MS.gene34575:CDS |
| TTGGTAAAATTTGTAAAGTT+GGG | 0.317130 | 4.3:+58721135 | MS.gene34575:CDS |
| GGGATAAGACACTTAAAGTT+TGG | 0.330304 | 4.3:+58720715 | MS.gene34575:CDS |
| TTCGCAAACAACCTTAAATC+TGG | 0.338735 | 4.3:-58720408 | None:intergenic |
| GAAGTGTTTGGAATCTATTA+AGG | 0.342710 | 4.3:+58720752 | MS.gene34575:CDS |
| CCAACAACAAAAGACTATTT+GGG | 0.358717 | 4.3:+58720570 | MS.gene34575:CDS |
| TTTGGTAAAATTTGTAAAGT+TGG | 0.360311 | 4.3:+58721134 | MS.gene34575:CDS |
| TTCGTGTTTGGAAAGTTTCC+AGG | 0.367861 | 4.3:+58720511 | MS.gene34575:CDS |
| TGCTGATAGCATTTCTTGTT+TGG | 0.374831 | 4.3:+58720659 | MS.gene34575:CDS |
| TGTTTCTGATTTGAAGTGTT+TGG | 0.377823 | 4.3:+58720740 | MS.gene34575:CDS |
| TTAAGGTTGTTTGCGAAATT+CGG | 0.381571 | 4.3:+58720414 | MS.gene34575:CDS |
| TTTGAAACAAGGGTATTCAT+TGG | 0.389882 | 4.3:-58720129 | None:intergenic |
| TGATGATGGAGTAGAAAGTA+TGG | 0.391324 | 4.3:-58720154 | None:intergenic |
| TCTGTTGTTGTTTCTGATGA+TGG | 0.393240 | 4.3:+58720927 | MS.gene34575:CDS |
| TTGATAGAAGTGTGAGAGTT+TGG | 0.399809 | 4.3:+58721249 | MS.gene34575:CDS |
| ATCAGTTTCTCATAGATCAT+TGG | 0.403558 | 4.3:+58720284 | MS.gene34575:CDS |
| TTCTGCAGATGGGAAAATTA+AGG | 0.406190 | 4.3:+58720830 | MS.gene34575:CDS |
| GCTTCATCATCTAATAGAAT+TGG | 0.416552 | 4.3:+58721197 | MS.gene34575:CDS |
| GCGAAATTCGGTCAAGGCGA+TGG | 0.421578 | 4.3:+58720426 | MS.gene34575:CDS |
| AAGATAGCAAGATTCGTGTT+TGG | 0.431533 | 4.3:+58720499 | MS.gene34575:CDS |
| GTTTGATTTATTCAGGGTCA+TGG | 0.443041 | 4.3:+58720694 | MS.gene34575:CDS |
| CAATATGAACTCACCACATA+AGG | 0.445391 | 4.3:-58720346 | None:intergenic |
| GAACACATTCTCTGAACTCC+TGG | 0.454182 | 4.3:-58720529 | None:intergenic |
| AGGGCAAAGACATCATAGTA+TGG | 0.455652 | 4.3:+58720379 | MS.gene34575:CDS |
| TGTTTCTGATGATGGAAAAT+GGG | 0.456175 | 4.3:+58720935 | MS.gene34575:CDS |
| GTTTATTCTGCTTCTGCAGA+TGG | 0.457417 | 4.3:+58720819 | MS.gene34575:CDS |
| ATTTGGAAAAGAGAGCCTTT+TGG | 0.468370 | 4.3:+58721116 | MS.gene34575:CDS |
| GTTTCATGTTTAGCCTTATG+TGG | 0.477781 | 4.3:+58720333 | MS.gene34575:CDS |
| GTTTATGGAGGTGGTTCTGA+TGG | 0.480581 | 4.3:+58720957 | MS.gene34575:CDS |
| TTGCTTCTACAACTTGATGA+TGG | 0.490998 | 4.3:-58720168 | None:intergenic |
| GTTCATATTGAGTGCATCAC+AGG | 0.491312 | 4.3:+58720359 | MS.gene34575:CDS |
| TGGTAAAATTTGTAAAGTTG+GGG | 0.503634 | 4.3:+58721136 | MS.gene34575:CDS |
| GGAAAATGGGTTTATGGAGG+TGG | 0.504695 | 4.3:+58720948 | MS.gene34575:CDS |
| GGATCAGCAGATAAAAGTAT+AGG | 0.505453 | 4.3:+58721092 | MS.gene34575:CDS |
| GATTTGCATGGTGGTGGTGA+TGG | 0.512681 | 4.3:-58720264 | None:intergenic |
| ATAATGGTTTGATTTATTCA+GGG | 0.512775 | 4.3:+58720688 | MS.gene34575:CDS |
| ATTAAGGCATGGGGAAAACA+AGG | 0.514895 | 4.3:+58720846 | MS.gene34575:CDS |
| ATGGGTTGGTAGCATGCAAA+GGG | 0.520634 | 4.3:+58720793 | MS.gene34575:CDS |
| TTTGATTTATTCAGGGTCAT+GGG | 0.520892 | 4.3:+58720695 | MS.gene34575:CDS |
| TGAAACAAAGGCTCATGAAA+TGG | 0.521270 | 4.3:+58721028 | MS.gene34575:CDS |
| CACATGATGATGCTATTAAT+GGG | 0.522119 | 4.3:+58720775 | MS.gene34575:CDS |
| TTTATTCTGCTTCTGCAGAT+GGG | 0.532550 | 4.3:+58720820 | MS.gene34575:CDS |
| GGAGACATCACAAGAGGTTG+TGG | 0.537342 | 4.3:+58720628 | MS.gene34575:CDS |
| AAAGTATGATGAAACAAAAG+TGG | 0.538411 | 4.3:+58721280 | MS.gene34575:CDS |
| AAACTCTCACACTTCTATCA+AGG | 0.539419 | 4.3:-58721247 | None:intergenic |
| GGGGTTATAATTGGACATGA+AGG | 0.541474 | 4.3:+58721155 | MS.gene34575:CDS |
| GAAAATGGTTTGTGAAACAA+AGG | 0.545867 | 4.3:+58721016 | MS.gene34575:CDS |
| AGATGGGAAAATTAAGGCAT+GGG | 0.554116 | 4.3:+58720836 | MS.gene34575:CDS |
| TCATCATCTAATAGAATTGG+TGG | 0.559788 | 4.3:+58721200 | MS.gene34575:CDS |
| TAGAAGTGTGAGAGTTTGGT+GGG | 0.560073 | 4.3:+58721253 | MS.gene34575:CDS |
| TTTGTGTATGTGTTTGATTG+GGG | 0.561324 | 4.3:+58721055 | MS.gene34575:CDS |
| TCATCTAATAGAATTGGTGG+TGG | 0.562304 | 4.3:+58721203 | MS.gene34575:CDS |
| CAGATGGGAAAATTAAGGCA+TGG | 0.562592 | 4.3:+58720835 | MS.gene34575:CDS |
| AAAGTAATTATGTTCAAACT+AGG | 0.570479 | 4.3:+58720607 | MS.gene34575:CDS |
| ATAGAAGTGTGAGAGTTTGG+TGG | 0.573934 | 4.3:+58721252 | MS.gene34575:CDS |
| GAAGCTTGTAAACACTTCAC+AGG | 0.574638 | 4.3:-58721179 | None:intergenic |
| TCATCAAGTTGTAGAAGCAA+TGG | 0.574974 | 4.3:+58720171 | MS.gene34575:CDS |
| AATGGGTTGGTAGCATGCAA+AGG | 0.575385 | 4.3:+58720792 | MS.gene34575:CDS |
| TTGTTTGCGAAATTCGGTCA+AGG | 0.581090 | 4.3:+58720420 | MS.gene34575:CDS |
| TGATGATGCTATTAATGGGT+TGG | 0.609569 | 4.3:+58720779 | MS.gene34575:CDS |
| TTGTGTATGTGTTTGATTGG+GGG | 0.615281 | 4.3:+58721056 | MS.gene34575:CDS |
| TTCATATTGAGTGCATCACA+GGG | 0.620924 | 4.3:+58720360 | MS.gene34575:CDS |
| CAACAACAAAAGACTATTTG+GGG | 0.631861 | 4.3:+58720571 | MS.gene34575:CDS |
| GAAACTGATTTGCATGGTGG+TGG | 0.634072 | 4.3:-58720270 | None:intergenic |
| GTATGATGAAACAAAAGTGG+AGG | 0.645051 | 4.3:+58721283 | MS.gene34575:CDS |
| CTATGAGAAACTGATTTGCA+TGG | 0.653319 | 4.3:-58720276 | None:intergenic |
| GATGGAAAATGGGTTTATGG+AGG | 0.657035 | 4.3:+58720945 | MS.gene34575:CDS |
| GATGGGAAAATTAAGGCATG+GGG | 0.658308 | 4.3:+58720837 | MS.gene34575:CDS |
| GCGATTCTTTCAGAACACGT+TGG | 0.661081 | 4.3:+58720306 | MS.gene34575:CDS |
| AAACTAGGAGACATCACAAG+AGG | 0.664661 | 4.3:+58720622 | MS.gene34575:CDS |
| TTAAGGCATGGGGAAAACAA+GGG | 0.674587 | 4.3:+58720847 | MS.gene34575:CDS |
| TGAGAAACTGATTTGCATGG+TGG | 0.728963 | 4.3:-58720273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTTGCATACTTTGAA+AGG | + | chr4.3:58720870-58720889 | MS.gene34575:CDS | 20.0% |
| !! | AAAGTAATTATGTTCAAACT+AGG | + | chr4.3:58720607-58720626 | MS.gene34575:CDS | 20.0% |
| !! | TTGGTAAAATTTGTAAAGTT+GGG | + | chr4.3:58721135-58721154 | MS.gene34575:CDS | 20.0% |
| !! | TTTGGTAAAATTTGTAAAGT+TGG | + | chr4.3:58721134-58721153 | MS.gene34575:CDS | 20.0% |
| !!! | AAATTTTGAGAATTGGAAAA+TGG | + | chr4.3:58721001-58721020 | MS.gene34575:CDS | 20.0% |
| !!! | ACTTTACAAATTTTACCAAA+AGG | - | chr4.3:58721134-58721153 | None:intergenic | 20.0% |
| !!! | ATAATGGTTTGATTTATTCA+GGG | + | chr4.3:58720688-58720707 | MS.gene34575:CDS | 20.0% |
| !!! | ATGAAAGAAATTTTGAGAAT+TGG | + | chr4.3:58720994-58721013 | MS.gene34575:CDS | 20.0% |
| ! | AAAGTATGATGAAACAAAAG+TGG | + | chr4.3:58721280-58721299 | MS.gene34575:CDS | 25.0% |
| ! | TGGTAAAATTTGTAAAGTTG+GGG | + | chr4.3:58721136-58721155 | MS.gene34575:CDS | 25.0% |
| !! | CAGATAAAAGTATAGGTATT+TGG | + | chr4.3:58721099-58721118 | MS.gene34575:CDS | 25.0% |
| !! | CATAATGGTTTGATTTATTC+AGG | + | chr4.3:58720687-58720706 | MS.gene34575:CDS | 25.0% |
| !! | TTTTGTGTATGTGTTTGATT+GGG | + | chr4.3:58721054-58721073 | MS.gene34575:CDS | 25.0% |
| !!! | AAAGTATGGATTTTGAAACA+AGG | - | chr4.3:58720143-58720162 | None:intergenic | 25.0% |
| !!! | AAGTATGGATTTTGAAACAA+GGG | - | chr4.3:58720142-58720161 | None:intergenic | 25.0% |
| !!! | ACTTTTGTTTCATCATACTT+TGG | - | chr4.3:58721281-58721300 | None:intergenic | 25.0% |
| ATCAGTTTCTCATAGATCAT+TGG | + | chr4.3:58720284-58720303 | MS.gene34575:CDS | 30.0% | |
| CAACAACAAAAGACTATTTG+GGG | + | chr4.3:58720571-58720590 | MS.gene34575:CDS | 30.0% | |
| CCAACAACAAAAGACTATTT+GGG | + | chr4.3:58720570-58720589 | MS.gene34575:CDS | 30.0% | |
| GCTTCATCATCTAATAGAAT+TGG | + | chr4.3:58721197-58721216 | MS.gene34575:CDS | 30.0% | |
| TCATCATCTAATAGAATTGG+TGG | + | chr4.3:58721200-58721219 | MS.gene34575:CDS | 30.0% | |
| TCCAACAACAAAAGACTATT+TGG | + | chr4.3:58720569-58720588 | MS.gene34575:CDS | 30.0% | |
| TGTAAAGTTGGGGTTATAAT+TGG | + | chr4.3:58721146-58721165 | MS.gene34575:CDS | 30.0% | |
| TTAAGGTTGTTTGCGAAATT+CGG | + | chr4.3:58720414-58720433 | MS.gene34575:CDS | 30.0% | |
| TTTGTGTATGTGTTTGATTG+GGG | + | chr4.3:58721055-58721074 | MS.gene34575:CDS | 30.0% | |
| ! | CACATGATGATGCTATTAAT+GGG | + | chr4.3:58720775-58720794 | MS.gene34575:CDS | 30.0% |
| ! | GAAAATGGTTTGTGAAACAA+AGG | + | chr4.3:58721016-58721035 | MS.gene34575:CDS | 30.0% |
| ! | GAAGTGTTTGGAATCTATTA+AGG | + | chr4.3:58720752-58720771 | MS.gene34575:CDS | 30.0% |
| ! | GTTTTGTGTATGTGTTTGAT+TGG | + | chr4.3:58721053-58721072 | MS.gene34575:CDS | 30.0% |
| ! | TCTTGTTTGGTTGTTCATAA+TGG | + | chr4.3:58720672-58720691 | MS.gene34575:CDS | 30.0% |
| ! | TGTTTCTGATTTGAAGTGTT+TGG | + | chr4.3:58720740-58720759 | MS.gene34575:CDS | 30.0% |
| ! | TTTGATTTATTCAGGGTCAT+GGG | + | chr4.3:58720695-58720714 | MS.gene34575:CDS | 30.0% |
| !! | GTGGATTTTTGTTGTATAGT+GGG | + | chr4.3:58721222-58721241 | MS.gene34575:CDS | 30.0% |
| !! | TGTTTCTGATGATGGAAAAT+GGG | + | chr4.3:58720935-58720954 | MS.gene34575:CDS | 30.0% |
| !! | TTGTTTCTGATGATGGAAAA+TGG | + | chr4.3:58720934-58720953 | MS.gene34575:CDS | 30.0% |
| !!! | ACTTTGAAAGGTGTTTTAGA+GGG | + | chr4.3:58720882-58720901 | MS.gene34575:CDS | 30.0% |
| !!! | TACTTTGAAAGGTGTTTTAG+AGG | + | chr4.3:58720881-58720900 | MS.gene34575:CDS | 30.0% |
| AAACTCTCACACTTCTATCA+AGG | - | chr4.3:58721250-58721269 | None:intergenic | 35.0% | |
| AAGATAGCAAGATTCGTGTT+TGG | + | chr4.3:58720499-58720518 | MS.gene34575:CDS | 35.0% | |
| AGATGGGAAAATTAAGGCAT+GGG | + | chr4.3:58720836-58720855 | MS.gene34575:CDS | 35.0% | |
| CAATATGAACTCACCACATA+AGG | - | chr4.3:58720349-58720368 | None:intergenic | 35.0% | |
| GGGATAAGACACTTAAAGTT+TGG | + | chr4.3:58720715-58720734 | MS.gene34575:CDS | 35.0% | |
| GTATGATGAAACAAAAGTGG+AGG | + | chr4.3:58721283-58721302 | MS.gene34575:CDS | 35.0% | |
| TATGGCAACAACCAGATTTA+AGG | + | chr4.3:58720397-58720416 | MS.gene34575:CDS | 35.0% | |
| TCATCTAATAGAATTGGTGG+TGG | + | chr4.3:58721203-58721222 | MS.gene34575:CDS | 35.0% | |
| TGAAACAAAGGCTCATGAAA+TGG | + | chr4.3:58721028-58721047 | MS.gene34575:CDS | 35.0% | |
| TGCTGATAGCATTTCTTGTT+TGG | + | chr4.3:58720659-58720678 | MS.gene34575:CDS | 35.0% | |
| TTCATATTGAGTGCATCACA+GGG | + | chr4.3:58720360-58720379 | MS.gene34575:CDS | 35.0% | |
| TTCGCAAACAACCTTAAATC+TGG | - | chr4.3:58720411-58720430 | None:intergenic | 35.0% | |
| TTCTGCAGATGGGAAAATTA+AGG | + | chr4.3:58720830-58720849 | MS.gene34575:CDS | 35.0% | |
| TTGCTTCTACAACTTGATGA+TGG | - | chr4.3:58720171-58720190 | None:intergenic | 35.0% | |
| TTGTGTATGTGTTTGATTGG+GGG | + | chr4.3:58721056-58721075 | MS.gene34575:CDS | 35.0% | |
| TTTATTCTGCTTCTGCAGAT+GGG | + | chr4.3:58720820-58720839 | MS.gene34575:CDS | 35.0% | |
| ! | ATTTGGAAAAGAGAGCCTTT+TGG | + | chr4.3:58721116-58721135 | MS.gene34575:CDS | 35.0% |
| ! | GCACATGATGATGCTATTAA+TGG | + | chr4.3:58720774-58720793 | MS.gene34575:CDS | 35.0% |
| ! | GGATCAGCAGATAAAAGTAT+AGG | + | chr4.3:58721092-58721111 | MS.gene34575:CDS | 35.0% |
| ! | GTTTGATTTATTCAGGGTCA+TGG | + | chr4.3:58720694-58720713 | MS.gene34575:CDS | 35.0% |
| ! | TCATCAAGTTGTAGAAGCAA+TGG | + | chr4.3:58720171-58720190 | MS.gene34575:CDS | 35.0% |
| ! | TGATGATGCTATTAATGGGT+TGG | + | chr4.3:58720779-58720798 | MS.gene34575:CDS | 35.0% |
| ! | TTGATAGAAGTGTGAGAGTT+TGG | + | chr4.3:58721249-58721268 | MS.gene34575:CDS | 35.0% |
| !! | CCCAAATAGTCTTTTGTTGT+TGG | - | chr4.3:58720573-58720592 | None:intergenic | 35.0% |
| !! | CTATGAGAAACTGATTTGCA+TGG | - | chr4.3:58720279-58720298 | None:intergenic | 35.0% |
| !! | GATGATGGAAAATGGGTTTA+TGG | + | chr4.3:58720942-58720961 | MS.gene34575:CDS | 35.0% |
| !! | GGTGGATTTTTGTTGTATAG+TGG | + | chr4.3:58721221-58721240 | MS.gene34575:CDS | 35.0% |
| !! | GTTTCATGTTTAGCCTTATG+TGG | + | chr4.3:58720333-58720352 | MS.gene34575:CDS | 35.0% |
| !! | TCTGTTGTTGTTTCTGATGA+TGG | + | chr4.3:58720927-58720946 | MS.gene34575:CDS | 35.0% |
| !! | TGATGATGGAGTAGAAAGTA+TGG | - | chr4.3:58720157-58720176 | None:intergenic | 35.0% |
| AAACTAGGAGACATCACAAG+AGG | + | chr4.3:58720622-58720641 | MS.gene34575:CDS | 40.0% | |
| AGGGCAAAGACATCATAGTA+TGG | + | chr4.3:58720379-58720398 | MS.gene34575:CDS | 40.0% | |
| ATTAAGGCATGGGGAAAACA+AGG | + | chr4.3:58720846-58720865 | MS.gene34575:CDS | 40.0% | |
| CAGATGGGAAAATTAAGGCA+TGG | + | chr4.3:58720835-58720854 | MS.gene34575:CDS | 40.0% | |
| GAAGCTTGTAAACACTTCAC+AGG | - | chr4.3:58721182-58721201 | None:intergenic | 40.0% | |
| GATGGGAAAATTAAGGCATG+GGG | + | chr4.3:58720837-58720856 | MS.gene34575:CDS | 40.0% | |
| GGGGTTATAATTGGACATGA+AGG | + | chr4.3:58721155-58721174 | MS.gene34575:CDS | 40.0% | |
| GTTCATATTGAGTGCATCAC+AGG | + | chr4.3:58720359-58720378 | MS.gene34575:CDS | 40.0% | |
| GTTTATTCTGCTTCTGCAGA+TGG | + | chr4.3:58720819-58720838 | MS.gene34575:CDS | 40.0% | |
| TTAAGGCATGGGGAAAACAA+GGG | + | chr4.3:58720847-58720866 | MS.gene34575:CDS | 40.0% | |
| TTCGTGTTTGGAAAGTTTCC+AGG | + | chr4.3:58720511-58720530 | MS.gene34575:CDS | 40.0% | |
| TTGTTTGCGAAATTCGGTCA+AGG | + | chr4.3:58720420-58720439 | MS.gene34575:CDS | 40.0% | |
| ! | ATAGAAGTGTGAGAGTTTGG+TGG | + | chr4.3:58721252-58721271 | MS.gene34575:CDS | 40.0% |
| ! | GATGGAAAATGGGTTTATGG+AGG | + | chr4.3:58720945-58720964 | MS.gene34575:CDS | 40.0% |
| ! | TAGAAGTGTGAGAGTTTGGT+GGG | + | chr4.3:58721253-58721272 | MS.gene34575:CDS | 40.0% |
| !! | GTCAAAGCACTAGCAACTTT+TGG | + | chr4.3:58720453-58720472 | MS.gene34575:CDS | 40.0% |
| !! | TGAGAAACTGATTTGCATGG+TGG | - | chr4.3:58720276-58720295 | None:intergenic | 40.0% |
| GAACACATTCTCTGAACTCC+TGG | - | chr4.3:58720532-58720551 | None:intergenic | 45.0% | |
| GCGATTCTTTCAGAACACGT+TGG | + | chr4.3:58720306-58720325 | MS.gene34575:CDS | 45.0% | |
| ! | GGAAAATGGGTTTATGGAGG+TGG | + | chr4.3:58720948-58720967 | MS.gene34575:CDS | 45.0% |
| !! | AATGGGTTGGTAGCATGCAA+AGG | + | chr4.3:58720792-58720811 | MS.gene34575:CDS | 45.0% |
| !! | ATGGGTTGGTAGCATGCAAA+GGG | + | chr4.3:58720793-58720812 | MS.gene34575:CDS | 45.0% |
| !! | GAAACTGATTTGCATGGTGG+TGG | - | chr4.3:58720273-58720292 | None:intergenic | 45.0% |
| !! | GTTTATGGAGGTGGTTCTGA+TGG | + | chr4.3:58720957-58720976 | MS.gene34575:CDS | 45.0% |
| !!! | ATTGGGGGTTTTTTGTGCAC+AGG | + | chr4.3:58721071-58721090 | MS.gene34575:CDS | 45.0% |
| GGAGACATCACAAGAGGTTG+TGG | + | chr4.3:58720628-58720647 | MS.gene34575:CDS | 50.0% | |
| !! | GATTTGCATGGTGGTGGTGA+TGG | - | chr4.3:58720267-58720286 | None:intergenic | 50.0% |
| GCGAAATTCGGTCAAGGCGA+TGG | + | chr4.3:58720426-58720445 | MS.gene34575:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 58720132 | 58721376 | 58720132 | ID=MS.gene34575 |
| chr4.3 | mRNA | 58720132 | 58721376 | 58720132 | ID=MS.gene34575.t1;Parent=MS.gene34575 |
| chr4.3 | exon | 58720132 | 58721376 | 58720132 | ID=MS.gene34575.t1.exon1;Parent=MS.gene34575.t1 |
| chr4.3 | CDS | 58720132 | 58721376 | 58720132 | ID=cds.MS.gene34575.t1;Parent=MS.gene34575.t1 |
| Gene Sequence |
| Protein sequence |
