Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34851.t1 | XP_003628618.1 | 99.2 | 395 | 3 | 0 | 1 | 395 | 1 | 395 | 6.50E-225 | 789.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34851.t1 | P52902 | 83.0 | 376 | 64 | 0 | 20 | 395 | 22 | 397 | 5.6e-185 | 648.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34851.t1 | G7LEP9 | 99.2 | 395 | 3 | 0 | 1 | 395 | 1 | 395 | 4.7e-225 | 789.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76034 | MS.gene34851 | PPI |
MS.gene074258 | MS.gene34851 | PPI |
MS.gene049277 | MS.gene34851 | PPI |
MS.gene34851 | MS.gene06396 | PPI |
MS.gene054963 | MS.gene34851 | PPI |
MS.gene013304 | MS.gene34851 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34851.t1 | MTR_8g062670 | 99.241 | 395 | 3 | 0 | 1 | 395 | 1 | 395 | 0.0 | 823 |
MS.gene34851.t1 | MTR_5g036600 | 83.029 | 383 | 62 | 1 | 13 | 395 | 16 | 395 | 0.0 | 652 |
MS.gene34851.t1 | MTR_8g024310 | 36.256 | 422 | 223 | 10 | 6 | 389 | 3 | 416 | 5.27e-81 | 255 |
MS.gene34851.t1 | MTR_3g088845 | 29.231 | 325 | 220 | 4 | 58 | 376 | 31 | 351 | 2.22e-42 | 152 |
MS.gene34851.t1 | MTR_3g088845 | 29.231 | 325 | 220 | 4 | 58 | 376 | 119 | 439 | 7.11e-42 | 153 |
MS.gene34851.t1 | MTR_3g096390 | 28.994 | 338 | 218 | 7 | 50 | 374 | 90 | 418 | 1.56e-40 | 149 |
MS.gene34851.t1 | MTR_3g096390 | 28.063 | 253 | 160 | 7 | 50 | 289 | 90 | 333 | 4.20e-24 | 102 |
MS.gene34851.t1 | MTR_3g088845 | 25.683 | 183 | 129 | 2 | 58 | 237 | 119 | 297 | 4.99e-17 | 81.6 |
MS.gene34851.t1 | MTR_8g075470 | 27.074 | 229 | 139 | 7 | 100 | 312 | 61 | 277 | 1.20e-14 | 75.1 |
MS.gene34851.t1 | MTR_7g118200 | 38.095 | 84 | 47 | 3 | 224 | 302 | 5 | 88 | 1.81e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34851.t1 | AT1G24180 | 78.086 | 397 | 81 | 4 | 1 | 395 | 1 | 393 | 0.0 | 650 |
MS.gene34851.t1 | AT1G59900 | 76.456 | 395 | 87 | 3 | 1 | 395 | 1 | 389 | 0.0 | 645 |
MS.gene34851.t1 | AT1G59900 | 76.640 | 381 | 83 | 3 | 1 | 381 | 1 | 375 | 0.0 | 624 |
MS.gene34851.t1 | AT1G01090 | 39.368 | 348 | 194 | 8 | 55 | 389 | 74 | 417 | 6.45e-77 | 244 |
MS.gene34851.t1 | AT5G09300 | 28.399 | 331 | 217 | 6 | 55 | 374 | 49 | 370 | 9.57e-42 | 151 |
MS.gene34851.t1 | AT5G09300 | 28.399 | 331 | 217 | 6 | 55 | 374 | 120 | 441 | 2.17e-41 | 152 |
MS.gene34851.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 100 | 395 | 72 | 371 | 2.32e-40 | 147 |
MS.gene34851.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 100 | 395 | 72 | 371 | 2.32e-40 | 147 |
MS.gene34851.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 100 | 395 | 89 | 388 | 3.83e-40 | 147 |
MS.gene34851.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 100 | 395 | 164 | 463 | 4.71e-40 | 148 |
MS.gene34851.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 100 | 395 | 216 | 515 | 6.62e-40 | 149 |
MS.gene34851.t1 | AT5G09300 | 27.935 | 247 | 158 | 6 | 55 | 290 | 120 | 357 | 5.67e-25 | 105 |
MS.gene34851.t1 | AT5G34780 | 34.043 | 188 | 109 | 5 | 195 | 374 | 31 | 211 | 1.10e-21 | 95.9 |
MS.gene34851.t1 | AT5G09300 | 27.419 | 186 | 128 | 2 | 55 | 237 | 120 | 301 | 7.17e-20 | 90.1 |
MS.gene34851.t1 | AT1G21400 | 28.378 | 148 | 103 | 1 | 100 | 244 | 216 | 363 | 7.73e-17 | 81.6 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGATCTTCCTGCTATTT+TGG | 0.127087 | 8.2:+38813523 | MS.gene34851:CDS |
TTTACCAATGTATATGTTAA+AGG | 0.140584 | 8.2:+38820721 | MS.gene34851:CDS |
CTTGGAGTTGGATTGGCTTT+TGG | 0.188485 | 8.2:+38813401 | MS.gene34851:CDS |
TTCTACTGAAAAGGAATTAA+AGG | 0.202760 | 8.2:+38819414 | MS.gene34851:CDS |
CTCTTAATATCGCCGCTCTT+TGG | 0.242363 | 8.2:+38813504 | MS.gene34851:CDS |
TGTTTCGACGGTTAGGGTTT+CGG | 0.291230 | 8.2:-38812970 | None:intergenic |
TGGTGATGGTGCTGCTAATC+AGG | 0.297061 | 8.2:+38813466 | MS.gene34851:CDS |
AAGGAAAGATGGGTGTTCTA+AGG | 0.319128 | 8.2:+38813298 | MS.gene34851:CDS |
GGATGGATGTTTCGACGGTT+AGG | 0.338621 | 8.2:-38812977 | None:intergenic |
AATGTATATGTTAAAGGCTT+AGG | 0.339639 | 8.2:+38820727 | MS.gene34851:CDS |
TCTTAATATCGCCGCTCTTT+GGG | 0.347641 | 8.2:+38813505 | MS.gene34851:CDS |
AGCTTTCTTACTCTCTCAAT+TGG | 0.359233 | 8.2:-38819373 | None:intergenic |
TGAGAAGGGTGGATCCGAAT+TGG | 0.361636 | 8.2:-38812893 | None:intergenic |
GCAGAAACCGCGGATGAGTT+TGG | 0.369250 | 8.2:-38813129 | None:intergenic |
ATTTACTTTGTACAGGTAGA+TGG | 0.383832 | 8.2:+38815270 | MS.gene34851:intron |
ATGTATATGTTAAAGGCTTA+GGG | 0.394667 | 8.2:+38820728 | MS.gene34851:CDS |
GTTGGAGCTCAGATTCCTCT+TGG | 0.398329 | 8.2:+38813383 | MS.gene34851:CDS |
GATTCCTCTTGGAGTTGGAT+TGG | 0.401098 | 8.2:+38813394 | MS.gene34851:CDS |
TGGCCACTCCATGTCTGATC+CGG | 0.401479 | 8.2:+38819205 | MS.gene34851:CDS |
CTTGTAATACGCAGGACTTT+TGG | 0.405631 | 8.2:-38813689 | None:intergenic |
TAATGTCCAGATTCTTGAAA+TGG | 0.407066 | 8.2:+38819166 | MS.gene34851:intron |
TATGGTGGACATGGGATTGT+TGG | 0.408224 | 8.2:+38813365 | MS.gene34851:CDS |
ATATGGTTATACCTTTGCTT+TGG | 0.412121 | 8.2:-38820566 | None:intergenic |
GCTCAGATTCCTCTTGGAGT+TGG | 0.414889 | 8.2:+38813389 | MS.gene34851:CDS |
CTTTGTACAGGTAGATGGTA+TGG | 0.416779 | 8.2:+38815275 | MS.gene34851:intron |
GAGAAGGGTGGATCCGAATT+GGG | 0.428990 | 8.2:-38812892 | None:intergenic |
GGTTAGGGTTTCGGTGGAAG+AGG | 0.446559 | 8.2:-38812961 | None:intergenic |
GATGGATGTTTCGACGGTTA+GGG | 0.447460 | 8.2:-38812976 | None:intergenic |
TGAGTTCGGAGGCGGTGGTT+TGG | 0.454095 | 8.2:-38813040 | None:intergenic |
GTGGTTTGGACGGTGGTGGA+AGG | 0.454242 | 8.2:-38813026 | None:intergenic |
AAGCGTGGAGATTATGCTCC+TGG | 0.457396 | 8.2:+38813709 | MS.gene34851:CDS |
TTCGGAGGCGGTGGTTTGGA+CGG | 0.457880 | 8.2:-38813036 | None:intergenic |
AGATTATGCTCCTGGATTGA+AGG | 0.459060 | 8.2:+38813717 | MS.gene34851:CDS |
CTGCCATCTCTACGACGGTC+AGG | 0.461075 | 8.2:+38813148 | MS.gene34851:CDS |
ATCTTTCTAACCTTCAATCC+AGG | 0.464660 | 8.2:-38813727 | None:intergenic |
TTCGGTGGAAGAGGAAGAAA+TGG | 0.466080 | 8.2:-38812952 | None:intergenic |
CGATTCTCATCCTCCCAATT+CGG | 0.467407 | 8.2:+38812879 | MS.gene34851:CDS |
GGCGGTGGTTTGGACGGTGG+TGG | 0.470193 | 8.2:-38813030 | None:intergenic |
TACAAAGCAAAAGTAACATT+GGG | 0.474957 | 8.2:-38813443 | None:intergenic |
TATGGAGGAGGATAGGAAGT+AGG | 0.481287 | 8.2:-38812919 | None:intergenic |
GGAAGGTGGTTCACAGTTGT+GGG | 0.483120 | 8.2:-38813009 | None:intergenic |
TCACGACATTTCTACTGAAA+AGG | 0.484619 | 8.2:+38819405 | MS.gene34851:CDS |
CAGAGGTGGCACCCTAATTG+AGG | 0.485594 | 8.2:+38813256 | MS.gene34851:CDS |
GAATTGATGGGAAGGAAAGA+TGG | 0.489679 | 8.2:+38813287 | MS.gene34851:CDS |
TTATACCTTTGCTTTGGCAA+TGG | 0.489696 | 8.2:-38820560 | None:intergenic |
GAGAGTAAGAAAGCTGGTAT+TGG | 0.491864 | 8.2:+38819381 | MS.gene34851:CDS |
ATTTGTGTAACAGATGGAAT+GGG | 0.492493 | 8.2:+38813646 | MS.gene34851:intron |
AAGGAACATGCTTTGAAGAA+TGG | 0.493732 | 8.2:+38815333 | MS.gene34851:CDS |
GGACATGAGTTCGGAGGCGG+TGG | 0.495990 | 8.2:-38813045 | None:intergenic |
TGAGATTAGCGGTGTTAGAC+AGG | 0.497125 | 8.2:+38819250 | MS.gene34851:CDS |
GATTTGTGTAACAGATGGAA+TGG | 0.503553 | 8.2:+38813645 | MS.gene34851:intron |
CGCGTGCGGTATGTGCTGCC+CGG | 0.506711 | 8.2:-38819224 | None:intergenic |
AGGAAAGATGGGTGTTCTAA+GGG | 0.508469 | 8.2:+38813299 | MS.gene34851:CDS |
ATGGAGGAGGATAGGAAGTA+GGG | 0.508866 | 8.2:-38812918 | None:intergenic |
CACAGTTGTGGGAAGTGAAA+GGG | 0.514497 | 8.2:-38812998 | None:intergenic |
GAGAACCATGTCGTTGAAGA+AGG | 0.516045 | 8.2:-38813066 | None:intergenic |
ACATTGGTAAATAGATCAGA+TGG | 0.517521 | 8.2:-38820709 | None:intergenic |
TAGGAAGTAGGGTTTGAGAA+GGG | 0.518293 | 8.2:-38812907 | None:intergenic |
GGCCACTCCATGTCTGATCC+GGG | 0.519101 | 8.2:+38819206 | MS.gene34851:CDS |
TTCTCACAAACCAAAATAGC+AGG | 0.519315 | 8.2:-38813533 | None:intergenic |
GTAAATAGATCAGATGGGTC+TGG | 0.522363 | 8.2:-38820703 | None:intergenic |
TGCAGGCATGTGGTGCTGAT+AGG | 0.523890 | 8.2:+38821059 | MS.gene34851:intron |
GTTGAAGAAGGACATGAGTT+CGG | 0.527595 | 8.2:-38813054 | None:intergenic |
TGGAAGGTGGTTCACAGTTG+TGG | 0.529373 | 8.2:-38813010 | None:intergenic |
GGTCAGGAAGCCGTTGCTGT+TGG | 0.530115 | 8.2:+38813164 | MS.gene34851:CDS |
GTTTGGACGGTGGTGGAAGG+TGG | 0.531937 | 8.2:-38813023 | None:intergenic |
AGAAATGGAACGGTGTCGTA+TGG | 0.534548 | 8.2:-38812937 | None:intergenic |
ATACAAAGCAAAAGTAACAT+TGG | 0.535697 | 8.2:-38813444 | None:intergenic |
GATGGGTGTTCTAAGGGAAA+AGG | 0.535962 | 8.2:+38813305 | MS.gene34851:CDS |
CATGGTTCTCATGCGCCGTA+TGG | 0.536252 | 8.2:+38813079 | MS.gene34851:CDS |
ATAGGAAGTAGGGTTTGAGA+AGG | 0.540691 | 8.2:-38812908 | None:intergenic |
GGAAGCCGTTGCTGTTGGAA+TGG | 0.541582 | 8.2:+38813169 | MS.gene34851:CDS |
TCACAGTTGTGGGAAGTGAA+AGG | 0.544039 | 8.2:-38812999 | None:intergenic |
GAAGTAGGGTTTGAGAAGGG+TGG | 0.544621 | 8.2:-38812904 | None:intergenic |
GGCTTCCATTCCAACAGCAA+CGG | 0.551680 | 8.2:-38813174 | None:intergenic |
TGTTAAAGGCTTAGGGGTCG+AGG | 0.557159 | 8.2:+38820735 | MS.gene34851:CDS |
GGAGGCGGTGGTTTGGACGG+TGG | 0.567848 | 8.2:-38813033 | None:intergenic |
TAAGCCTTTAACATATACAT+TGG | 0.568328 | 8.2:-38820725 | None:intergenic |
CTTCCTGACCGTCGTAGAGA+TGG | 0.569109 | 8.2:-38813151 | None:intergenic |
TGCTTTGAAGAATGGTCCCC+TGG | 0.570115 | 8.2:+38815341 | MS.gene34851:CDS |
GGAACGGTGTCGTATGGAGG+AGG | 0.572423 | 8.2:-38812931 | None:intergenic |
CATGTCCTTCTTCAACGACA+TGG | 0.574969 | 8.2:+38813061 | MS.gene34851:CDS |
GAAGGACATGAGTTCGGAGG+CGG | 0.576411 | 8.2:-38813048 | None:intergenic |
GATCAGACATGGAGTGGCCA+TGG | 0.584534 | 8.2:-38819202 | None:intergenic |
AATTGATGGGAAGGAAAGAT+GGG | 0.593176 | 8.2:+38813288 | MS.gene34851:CDS |
TGTGCTGCCCGGATCAGACA+TGG | 0.594191 | 8.2:-38819213 | None:intergenic |
CGAAGCCATTGCCAAAGCAA+AGG | 0.598171 | 8.2:+38820555 | MS.gene34851:CDS |
AATTGAGAGAGTAAGAAAGC+TGG | 0.598823 | 8.2:+38819375 | MS.gene34851:CDS |
GAAAGGGATGGATGTTTCGA+CGG | 0.599008 | 8.2:-38812982 | None:intergenic |
TGCCCGGATCAGACATGGAG+TGG | 0.600111 | 8.2:-38819208 | None:intergenic |
GCAAGCTTGCAAATTTGCAA+AGG | 0.602106 | 8.2:+38815314 | MS.gene34851:CDS |
AATGGAACGGTGTCGTATGG+AGG | 0.604848 | 8.2:-38812934 | None:intergenic |
GGTGTCGTATGGAGGAGGAT+AGG | 0.607519 | 8.2:-38812926 | None:intergenic |
TTCGACGGTTAGGGTTTCGG+TGG | 0.608890 | 8.2:-38812967 | None:intergenic |
GGTGATGGTGCTGCTAATCA+GGG | 0.617038 | 8.2:+38813467 | MS.gene34851:CDS |
GGGTGTTCTAAGGGAAAAGG+TGG | 0.623922 | 8.2:+38813308 | MS.gene34851:CDS |
AGTCAGCAGCGATCTCCATA+CGG | 0.627581 | 8.2:-38813094 | None:intergenic |
AGTACAGTGATCACGATAAG+CGG | 0.629898 | 8.2:-38813225 | None:intergenic |
CGCACGCGTGATGAGATTAG+CGG | 0.635779 | 8.2:+38819239 | MS.gene34851:CDS |
CGCTAATCTCATCACGCGTG+CGG | 0.639390 | 8.2:-38819238 | None:intergenic |
ATGGACACTTACAGATACCA+TGG | 0.644817 | 8.2:+38819185 | MS.gene34851:CDS |
AGTCCTGCGTATTACAAGCG+TGG | 0.644994 | 8.2:+38813694 | MS.gene34851:CDS |
AAAGCCAATCCAACTCCAAG+AGG | 0.648911 | 8.2:-38813398 | None:intergenic |
CGTAGAGATGGCAGAAACCG+CGG | 0.660828 | 8.2:-38813139 | None:intergenic |
CATTGGTAAATAGATCAGAT+GGG | 0.666454 | 8.2:-38820708 | None:intergenic |
AAGGGTGGATCCGAATTGGG+AGG | 0.666803 | 8.2:-38812889 | None:intergenic |
TACAAAGCCAAACTCATCCG+CGG | 0.667143 | 8.2:+38813122 | MS.gene34851:CDS |
TGTATATGTTAAAGGCTTAG+GGG | 0.667239 | 8.2:+38820729 | MS.gene34851:CDS |
ATGGAATGGGGACTGCTGAG+TGG | 0.670807 | 8.2:+38813659 | MS.gene34851:CDS |
TGGAAGAGGAAGAAATGGAA+CGG | 0.671358 | 8.2:-38812947 | None:intergenic |
TCTCCACGCTTGTAATACGC+AGG | 0.672536 | 8.2:-38813697 | None:intergenic |
AGCAGGAAGATCCCAAAGAG+CGG | 0.675016 | 8.2:-38813516 | None:intergenic |
GAAGAAGGACATGAGTTCGG+AGG | 0.678757 | 8.2:-38813051 | None:intergenic |
GGTTTCTGCCATCTCTACGA+CGG | 0.718050 | 8.2:+38813143 | MS.gene34851:CDS |
TTTGTGTAACAGATGGAATG+GGG | 0.720617 | 8.2:+38813647 | MS.gene34851:intron |
GTTGTGGGAAGTGAAAGGGA+TGG | 0.740175 | 8.2:-38812994 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 38812867 | 38821108 | 38812867 | ID=MS.gene34851 |
chr8.2 | mRNA | 38812867 | 38821108 | 38812867 | ID=MS.gene34851.t1;Parent=MS.gene34851 |
chr8.2 | exon | 38812867 | 38813563 | 38812867 | ID=MS.gene34851.t1.exon1;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38812867 | 38813563 | 38812867 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38813659 | 38813738 | 38813659 | ID=MS.gene34851.t1.exon2;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38813659 | 38813738 | 38813659 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38815285 | 38815362 | 38815285 | ID=MS.gene34851.t1.exon3;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38815285 | 38815362 | 38815285 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38819176 | 38819271 | 38819176 | ID=MS.gene34851.t1.exon4;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38819176 | 38819271 | 38819176 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38819364 | 38819435 | 38819364 | ID=MS.gene34851.t1.exon5;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38819364 | 38819435 | 38819364 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38820523 | 38820576 | 38820523 | ID=MS.gene34851.t1.exon6;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38820523 | 38820576 | 38820523 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38820691 | 38820756 | 38820691 | ID=MS.gene34851.t1.exon7;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38820691 | 38820756 | 38820691 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
chr8.2 | exon | 38821064 | 38821108 | 38821064 | ID=MS.gene34851.t1.exon8;Parent=MS.gene34851.t1 |
chr8.2 | CDS | 38821064 | 38821108 | 38821064 | ID=cds.MS.gene34851.t1;Parent=MS.gene34851.t1 |
Gene Sequence |
Protein sequence |