Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34926.t1 | RHN59531.1 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 2.20E-22 | 116.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34926.t1 | A0A072UTQ5 | 43.9 | 164 | 63 | 4 | 135 | 269 | 122 | 285 | 1.6e-22 | 116.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene34926 | 0.80544 | 1.33E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene34926 | -0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene34926 | -0.802413 | 5.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34926.t1 | MTR_4g032565 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 1.69e-31 | 118 |
| MS.gene34926.t1 | MTR_4g032585 | 43.195 | 169 | 67 | 5 | 130 | 269 | 117 | 285 | 2.20e-31 | 117 |
| MS.gene34926.t1 | MTR_8g064300 | 38.919 | 185 | 96 | 4 | 99 | 268 | 127 | 309 | 3.36e-29 | 112 |
| MS.gene34926.t1 | MTR_5g093790 | 38.021 | 192 | 102 | 4 | 92 | 268 | 194 | 383 | 3.22e-28 | 111 |
| MS.gene34926.t1 | MTR_7g110100 | 45.946 | 148 | 65 | 4 | 135 | 268 | 378 | 524 | 2.25e-25 | 105 |
| MS.gene34926.t1 | MTR_1g105785 | 40.541 | 148 | 71 | 3 | 138 | 268 | 379 | 526 | 2.68e-23 | 99.4 |
| MS.gene34926.t1 | MTR_3g108500 | 31.169 | 231 | 82 | 5 | 107 | 261 | 25 | 254 | 1.83e-22 | 93.6 |
| MS.gene34926.t1 | MTR_7g051400 | 39.583 | 144 | 70 | 3 | 138 | 264 | 357 | 500 | 7.82e-22 | 94.7 |
| MS.gene34926.t1 | MTR_2g040680 | 38.931 | 131 | 72 | 2 | 138 | 267 | 119 | 242 | 6.83e-20 | 86.3 |
| MS.gene34926.t1 | MTR_1g492690 | 33.333 | 138 | 74 | 3 | 138 | 257 | 173 | 310 | 6.29e-16 | 77.0 |
| MS.gene34926.t1 | MTR_1g115520 | 35.211 | 71 | 46 | 0 | 129 | 199 | 56 | 126 | 1.98e-12 | 63.9 |
| MS.gene34926.t1 | MTR_3g452170 | 40.000 | 120 | 57 | 4 | 163 | 268 | 333 | 451 | 4.04e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGATAATATACATGATTT+TGG | 0.178118 | 4.1:-16246695 | None:intergenic |
| TGGGAAACAAATGTTGTTTA+AGG | 0.242210 | 4.1:+16247156 | MS.gene34926:CDS |
| GAAAGGCTTGCTGCAACTTT+AGG | 0.274755 | 4.1:+16245211 | MS.gene34926:CDS |
| TTCCCAACCACTTTGCTACT+TGG | 0.290059 | 4.1:-16247610 | None:intergenic |
| TGTGACTGTCCACAAAATTA+AGG | 0.297574 | 4.1:+16247267 | MS.gene34926:CDS |
| ATGGGAACTTAAAGCATAAT+TGG | 0.316343 | 4.1:+16247191 | MS.gene34926:CDS |
| TAATCTCCATTCATCTCATT+TGG | 0.330111 | 4.1:+16245020 | MS.gene34926:CDS |
| ATAGCACAGATGAGAATAGA+TGG | 0.415065 | 4.1:-16246333 | None:intergenic |
| TGTTTAATTGTGCAGGGAAC+CGG | 0.424669 | 4.1:+16247097 | MS.gene34926:intron |
| GTGTAGATCCGGCTGTTCTC+AGG | 0.427894 | 4.1:-16244951 | None:intergenic |
| AACGCTAGGTTTGAGGAATT+AGG | 0.434175 | 4.1:+16244991 | MS.gene34926:CDS |
| ATGTCCTACCATTGTTTGAC+AGG | 0.437862 | 4.1:+16246381 | MS.gene34926:CDS |
| GTTGTTTAAGGTGGAATTCA+CGG | 0.447146 | 4.1:+16247168 | MS.gene34926:CDS |
| ATATCCTGAGATGTTGGTTA+TGG | 0.455803 | 4.1:+16247409 | MS.gene34926:CDS |
| GCTGATGAACGCTAGGTTTG+AGG | 0.467581 | 4.1:+16244984 | MS.gene34926:CDS |
| CGAGGTTGCAAGTGTAGATC+CGG | 0.469365 | 4.1:-16244962 | None:intergenic |
| ATCTATTCTCATCTGTGCTA+TGG | 0.472920 | 4.1:+16246335 | MS.gene34926:CDS |
| TTGCGAGTATCCAATTGATC+TGG | 0.475496 | 4.1:+16247123 | MS.gene34926:CDS |
| TTTAATAATTGCAGTTCCGT+TGG | 0.476199 | 4.1:+16246054 | MS.gene34926:intron |
| GAAACAAATGTTGTTTAAGG+TGG | 0.479313 | 4.1:+16247159 | MS.gene34926:CDS |
| TTGACGCAATGAACTTTGAC+AGG | 0.484199 | 4.1:-16247700 | None:intergenic |
| GAGATTGTTGCAGAGAAGAA+AGG | 0.502375 | 4.1:+16245194 | MS.gene34926:CDS |
| GACATACCAAATGAGATGAA+TGG | 0.509003 | 4.1:-16245026 | None:intergenic |
| CACCAAGTAGCAAAGTGGTT+GGG | 0.514111 | 4.1:+16247608 | MS.gene34926:CDS |
| CCCTCTTGAACATGCTCCAA+CGG | 0.524368 | 4.1:-16246070 | None:intergenic |
| CAACCTCGCTGATGAACGCT+AGG | 0.533506 | 4.1:+16244977 | MS.gene34926:CDS |
| ATTGCCATAACCAACATCTC+AGG | 0.534276 | 4.1:-16247413 | None:intergenic |
| ACTTTCTCTAGATTGGGTGT+TGG | 0.538747 | 4.1:+16245169 | MS.gene34926:intron |
| ATGAGAGACCTGAGAACAGC+CGG | 0.541466 | 4.1:+16244943 | MS.gene34926:CDS |
| TAGAACACTTGCAGCTAACA+AGG | 0.541533 | 4.1:+16246132 | MS.gene34926:CDS |
| GTGGTTGGGAAAAGATTAGC+TGG | 0.541972 | 4.1:+16247622 | MS.gene34926:CDS |
| TTTAAGGTGGAATTCACGGA+TGG | 0.557502 | 4.1:+16247172 | MS.gene34926:CDS |
| TCATTGCGTCAAAGTTGAGA+AGG | 0.566953 | 4.1:+16247711 | MS.gene34926:CDS |
| TCCGTTGGAGCATGTTCAAG+AGG | 0.576223 | 4.1:+16246069 | MS.gene34926:CDS |
| AAAAGATTAGCTGGCAGCGT+GGG | 0.580966 | 4.1:+16247631 | MS.gene34926:CDS |
| ACACCAAGTAGCAAAGTGGT+TGG | 0.586766 | 4.1:+16247607 | MS.gene34926:CDS |
| AATTGGATACTCGCAACTAC+CGG | 0.587687 | 4.1:-16247116 | None:intergenic |
| CTCAGGTCTCTCATCGACAT+CGG | 0.590904 | 4.1:-16244934 | None:intergenic |
| TTAAGGTGGAATTCACGGAT+GGG | 0.591193 | 4.1:+16247173 | MS.gene34926:CDS |
| AACGTGGAAGAAACTGAAGT+TGG | 0.595322 | 4.1:+16247658 | MS.gene34926:CDS |
| ATAGATGGGCTACACATGCA+TGG | 0.596394 | 4.1:-16246318 | None:intergenic |
| TTGATTTATTAGGTGCTACA+CGG | 0.596474 | 4.1:+16246768 | MS.gene34926:intron |
| AATGGTAGGACATCAATGCT+TGG | 0.600102 | 4.1:-16246371 | None:intergenic |
| CGATGACAACATACATCAAG+TGG | 0.602815 | 4.1:-16247443 | None:intergenic |
| AACTTTAGGAACATTAATTG+CGG | 0.604320 | 4.1:+16245225 | MS.gene34926:CDS |
| AGCTTCTCTTGATAGCATAG+TGG | 0.608989 | 4.1:-16247216 | None:intergenic |
| CCGTTGGAGCATGTTCAAGA+GGG | 0.612238 | 4.1:+16246070 | MS.gene34926:CDS |
| TTTAGGAACATTAATTGCGG+TGG | 0.612421 | 4.1:+16245228 | MS.gene34926:CDS |
| TATACCTGTCAAACAATGGT+AGG | 0.612513 | 4.1:-16246385 | None:intergenic |
| TTGCATATATCCTGAGATGT+TGG | 0.613483 | 4.1:+16247403 | MS.gene34926:CDS |
| TAGCACAGATGAGAATAGAT+GGG | 0.620099 | 4.1:-16246332 | None:intergenic |
| GGTTTATACCTGTCAAACAA+TGG | 0.623394 | 4.1:-16246389 | None:intergenic |
| TGCTGACAAGATTTGCAACA+AGG | 0.629992 | 4.1:+16247367 | MS.gene34926:intron |
| AAATACACCAAGTAGCAAAG+TGG | 0.642147 | 4.1:+16247603 | MS.gene34926:CDS |
| TGGCAGCGTGGGTTCGAACG+TGG | 0.648721 | 4.1:+16247642 | MS.gene34926:CDS |
| AACTGAGAGCAAATCAAACG+AGG | 0.670294 | 4.1:+16247576 | MS.gene34926:intron |
| GAAAAGATTAGCTGGCAGCG+TGG | 0.680628 | 4.1:+16247630 | MS.gene34926:CDS |
| AAACCTAGCGTTCATCAGCG+AGG | 0.714258 | 4.1:-16244980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTATATTACTTTTTTT+CGG | + | chr4.1:16245456-16245475 | MS.gene34926:intron | 10.0% |
| !! | AATATAATTCATAGATCAAA+AGG | - | chr4.1:16245447-16245466 | None:intergenic | 15.0% |
| !! | TTTATATAATCATAGATAGA+AGG | - | chr4.1:16246275-16246294 | None:intergenic | 15.0% |
| !!! | TATTTTTCATCTATTGATAA+TGG | + | chr4.1:16245888-16245907 | MS.gene34926:intron | 15.0% |
| !!! | TCAAAATTATAATAATGGAA+AGG | - | chr4.1:16246450-16246469 | None:intergenic | 15.0% |
| !!! | TGTAAGCTTTAAATAATTAT+GGG | + | chr4.1:16246874-16246893 | MS.gene34926:intron | 15.0% |
| !!! | TTGTAAGCTTTAAATAATTA+TGG | + | chr4.1:16246873-16246892 | MS.gene34926:intron | 15.0% |
| !! | AAAATACACAGACATTTAAT+TGG | - | chr4.1:16246225-16246244 | None:intergenic | 20.0% |
| !! | AAACATGATAAAAGAATAGA+AGG | - | chr4.1:16245072-16245091 | None:intergenic | 20.0% |
| !! | AACATGATAAAAGAATAGAA+GGG | - | chr4.1:16245071-16245090 | None:intergenic | 20.0% |
| !! | ATAGAAATAAACACAAAGAA+TGG | - | chr4.1:16245399-16245418 | None:intergenic | 20.0% |
| !! | ATATTAGAAAGAGTTAAGTT+TGG | - | chr4.1:16246016-16246035 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAACGTCAAATT+AGG | - | chr4.1:16246639-16246658 | None:intergenic | 20.0% |
| !! | TAACTCACTATAATTTACTT+TGG | + | chr4.1:16245972-16245991 | MS.gene34926:intron | 20.0% |
| !! | TTATATTTGCATCATATCAA+AGG | - | chr4.1:16245955-16245974 | None:intergenic | 20.0% |
| !! | TTATTTACTTTCTCTAGATT+GGG | + | chr4.1:16245163-16245182 | MS.gene34926:intron | 20.0% |
| !! | TTGAATTTAGAAAACAAAGA+AGG | + | chr4.1:16247051-16247070 | MS.gene34926:intron | 20.0% |
| !!! | AATTTCTTTTGATTAAGTCA+TGG | + | chr4.1:16245708-16245727 | MS.gene34926:intron | 20.0% |
| !!! | AGTGATAATATACATGATTT+TGG | - | chr4.1:16246698-16246717 | None:intergenic | 20.0% |
| !!! | ATTTGGTTACAATCATTTTA+CGG | + | chr4.1:16246604-16246623 | MS.gene34926:intron | 20.0% |
| !!! | CATCTATCTTTTGATTTATT+AGG | + | chr4.1:16246758-16246777 | MS.gene34926:intron | 20.0% |
| !!! | GTTAATGTTACTGATTTTTA+AGG | - | chr4.1:16246822-16246841 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAAATTCAAATG+TGG | - | chr4.1:16247048-16247067 | None:intergenic | 20.0% |
| !!! | TTTATTCCTAATTTTCTAGA+AGG | + | chr4.1:16245089-16245108 | MS.gene34926:intron | 20.0% |
| ! | AATCAAAAGATAGATGAGTT+AGG | - | chr4.1:16246754-16246773 | None:intergenic | 25.0% |
| ! | GTTATTTACTTTCTCTAGAT+TGG | + | chr4.1:16245162-16245181 | MS.gene34926:intron | 25.0% |
| ! | TATAATCATAGATAGAAGGA+TGG | - | chr4.1:16246271-16246290 | None:intergenic | 25.0% |
| !! | AAAACTCCTTCTAGAAAATT+AGG | - | chr4.1:16245098-16245117 | None:intergenic | 25.0% |
| !! | AACTTTAGGAACATTAATTG+CGG | + | chr4.1:16245225-16245244 | MS.gene34926:CDS | 25.0% |
| !! | TAGTTGTACAAGATTTTGTT+CGG | + | chr4.1:16247290-16247309 | MS.gene34926:intron | 25.0% |
| !! | TTTTATGCAGTGATGATTTA+TGG | + | chr4.1:16245115-16245134 | MS.gene34926:intron | 25.0% |
| !!! | AATTGTTGTTTAATTGTGCA+GGG | + | chr4.1:16247091-16247110 | MS.gene34926:intron | 25.0% |
| !!! | CGAGGTTTTAAGTTTTTAAT+TGG | + | chr4.1:16247493-16247512 | MS.gene34926:intron | 25.0% |
| !!! | TAATTGTTGTTTAATTGTGC+AGG | + | chr4.1:16247090-16247109 | MS.gene34926:intron | 25.0% |
| !!! | TATATTACTTTTTTTCGGCT+AGG | + | chr4.1:16245461-16245480 | MS.gene34926:intron | 25.0% |
| AAAATGGTTTCATCATAACG+TGG | - | chr4.1:16245614-16245633 | None:intergenic | 30.0% | |
| AAACTGATTGATGAGAAGTA+TGG | - | chr4.1:16246413-16246432 | None:intergenic | 30.0% | |
| AACAACAATTATTGCCACTA+TGG | - | chr4.1:16247081-16247100 | None:intergenic | 30.0% | |
| AATCTAATCTAACTCGGATA+CGG | - | chr4.1:16246510-16246529 | None:intergenic | 30.0% | |
| ACAAAAACATCCAGATCAAT+TGG | - | chr4.1:16247136-16247155 | None:intergenic | 30.0% | |
| AGAAGTTCCTCAATGATTTA+AGG | + | chr4.1:16245774-16245793 | MS.gene34926:intron | 30.0% | |
| ATGAAGTCTCTCTAAGTAAT+AGG | - | chr4.1:16245582-16245601 | None:intergenic | 30.0% | |
| ATGGGAACTTAAAGCATAAT+TGG | + | chr4.1:16247191-16247210 | MS.gene34926:CDS | 30.0% | |
| ATTCGCAATCTAATCTAACT+CGG | - | chr4.1:16246516-16246535 | None:intergenic | 30.0% | |
| GAAAACGTAACATATACTTG+TGG | - | chr4.1:16247471-16247490 | None:intergenic | 30.0% | |
| GATTCAATGAAGAACAATCA+GGG | - | chr4.1:16246191-16246210 | None:intergenic | 30.0% | |
| GCAAAACACTGATATTCAAT+TGG | - | chr4.1:16246163-16246182 | None:intergenic | 30.0% | |
| TAATCTCCATTCATCTCATT+TGG | + | chr4.1:16245020-16245039 | MS.gene34926:CDS | 30.0% | |
| TGAAGTCTCTCTAAGTAATA+GGG | - | chr4.1:16245581-16245600 | None:intergenic | 30.0% | |
| TGATTCAATGAAGAACAATC+AGG | - | chr4.1:16246192-16246211 | None:intergenic | 30.0% | |
| TTTAATAATTGCAGTTCCGT+TGG | + | chr4.1:16246054-16246073 | MS.gene34926:intron | 30.0% | |
| ! | GAAACAAATGTTGTTTAAGG+TGG | + | chr4.1:16247159-16247178 | MS.gene34926:CDS | 30.0% |
| ! | GTACAACTACCTTAATTTTG+TGG | - | chr4.1:16247279-16247298 | None:intergenic | 30.0% |
| ! | TATATGTTACGTTTTCAACG+AGG | + | chr4.1:16247475-16247494 | MS.gene34926:intron | 30.0% |
| ! | TGGGAAACAAATGTTGTTTA+AGG | + | chr4.1:16247156-16247175 | MS.gene34926:CDS | 30.0% |
| ! | TTGATTTATTAGGTGCTACA+CGG | + | chr4.1:16246768-16246787 | MS.gene34926:intron | 30.0% |
| !! | ATTGATCTGGATGTTTTTGT+TGG | + | chr4.1:16247136-16247155 | MS.gene34926:CDS | 30.0% |
| !! | TTGATCTGGATGTTTTTGTT+GGG | + | chr4.1:16247137-16247156 | MS.gene34926:CDS | 30.0% |
| !!! | AAACCATTTTTAGTTATGCC+AGG | + | chr4.1:16245624-16245643 | MS.gene34926:intron | 30.0% |
| !!! | ACACAATCAGGTAGTTTTAT+GGG | + | chr4.1:16246997-16247016 | MS.gene34926:intron | 30.0% |
| !!! | TTTGTTTGTTTTAGCACCAT+TGG | + | chr4.1:16246475-16246494 | MS.gene34926:intron | 30.0% |
| AAATACACCAAGTAGCAAAG+TGG | + | chr4.1:16247603-16247622 | MS.gene34926:CDS | 35.0% | |
| AATTCACACGTTGAAGATGA+CGG | + | chr4.1:16245488-16245507 | MS.gene34926:intron | 35.0% | |
| AGTCCTGGCATAACTAAAAA+TGG | - | chr4.1:16245630-16245649 | None:intergenic | 35.0% | |
| ATAGCACAGATGAGAATAGA+TGG | - | chr4.1:16246336-16246355 | None:intergenic | 35.0% | |
| ATAGGGAAAAGTGAAATACG+TGG | - | chr4.1:16245564-16245583 | None:intergenic | 35.0% | |
| ATCTAATCTAACTCGGATAC+GGG | - | chr4.1:16246509-16246528 | None:intergenic | 35.0% | |
| ATCTATTCTCATCTGTGCTA+TGG | + | chr4.1:16246335-16246354 | MS.gene34926:CDS | 35.0% | |
| CAACGTTTGTTTGTATGACA+GGG | + | chr4.1:16246659-16246678 | MS.gene34926:intron | 35.0% | |
| CAATGTTCAAATTGAAGTCC+TGG | - | chr4.1:16245645-16245664 | None:intergenic | 35.0% | |
| GAACTTGATGTTGAATACGT+AGG | + | chr4.1:16246569-16246588 | MS.gene34926:intron | 35.0% | |
| GACATACCAAATGAGATGAA+TGG | - | chr4.1:16245029-16245048 | None:intergenic | 35.0% | |
| GGTTTATACCTGTCAAACAA+TGG | - | chr4.1:16246392-16246411 | None:intergenic | 35.0% | |
| TAGCACAGATGAGAATAGAT+GGG | - | chr4.1:16246335-16246354 | None:intergenic | 35.0% | |
| TATACCTGTCAAACAATGGT+AGG | - | chr4.1:16246388-16246407 | None:intergenic | 35.0% | |
| TCACTTGCCTTAAATCATTG+AGG | - | chr4.1:16245784-16245803 | None:intergenic | 35.0% | |
| TGTGACTGTCCACAAAATTA+AGG | + | chr4.1:16247267-16247286 | MS.gene34926:CDS | 35.0% | |
| TTCGCATCTAATCATGTAGA+TGG | + | chr4.1:16245842-16245861 | MS.gene34926:intron | 35.0% | |
| TTGCATATATCCTGAGATGT+TGG | + | chr4.1:16247403-16247422 | MS.gene34926:CDS | 35.0% | |
| TTTAGGAACATTAATTGCGG+TGG | + | chr4.1:16245228-16245247 | MS.gene34926:CDS | 35.0% | |
| ! | ATATCCTGAGATGTTGGTTA+TGG | + | chr4.1:16247409-16247428 | MS.gene34926:CDS | 35.0% |
| ! | GTAGGTTATTGCTGCTTATT+TGG | + | chr4.1:16246587-16246606 | MS.gene34926:intron | 35.0% |
| ! | GTTGTTTAAGGTGGAATTCA+CGG | + | chr4.1:16247168-16247187 | MS.gene34926:CDS | 35.0% |
| !! | CACACAATCAGGTAGTTTTA+TGG | + | chr4.1:16246996-16247015 | MS.gene34926:intron | 35.0% |
| !! | CATGGTTGAATTACTGATTC+AGG | + | chr4.1:16245726-16245745 | MS.gene34926:intron | 35.0% |
| !! | GTGGTTGATGAAACTTATGT+GGG | + | chr4.1:16245140-16245159 | MS.gene34926:intron | 35.0% |
| !! | TCATGTAGATGGTTGATAGT+TGG | + | chr4.1:16245853-16245872 | MS.gene34926:intron | 35.0% |
| !! | TGTGGTTGATGAAACTTATG+TGG | + | chr4.1:16245139-16245158 | MS.gene34926:intron | 35.0% |
| !!! | TGATTTGCTCTCAGTTTTAG+TGG | - | chr4.1:16247572-16247591 | None:intergenic | 35.0% |
| AACGCTAGGTTTGAGGAATT+AGG | + | chr4.1:16244991-16245010 | MS.gene34926:CDS | 40.0% | |
| AACGTGGAAGAAACTGAAGT+TGG | + | chr4.1:16247658-16247677 | MS.gene34926:CDS | 40.0% | |
| AACTGAGAGCAAATCAAACG+AGG | + | chr4.1:16247576-16247595 | MS.gene34926:intron | 40.0% | |
| AATGGTAGGACATCAATGCT+TGG | - | chr4.1:16246374-16246393 | None:intergenic | 40.0% | |
| AATTGGATACTCGCAACTAC+CGG | - | chr4.1:16247119-16247138 | None:intergenic | 40.0% | |
| ACTTTCTCTAGATTGGGTGT+TGG | + | chr4.1:16245169-16245188 | MS.gene34926:intron | 40.0% | |
| ATGTCCTACCATTGTTTGAC+AGG | + | chr4.1:16246381-16246400 | MS.gene34926:CDS | 40.0% | |
| ATTAGGATTCAAGCCATTGC+AGG | - | chr4.1:16245301-16245320 | None:intergenic | 40.0% | |
| ATTGCCATAACCAACATCTC+AGG | - | chr4.1:16247416-16247435 | None:intergenic | 40.0% | |
| CATCAAGTACAGGACATATG+TGG | + | chr4.1:16246544-16246563 | MS.gene34926:intron | 40.0% | |
| CGATGACAACATACATCAAG+TGG | - | chr4.1:16247446-16247465 | None:intergenic | 40.0% | |
| GAAAAGTGAAATACGTGGAG+GGG | - | chr4.1:16245559-16245578 | None:intergenic | 40.0% | |
| GAGAGCGAGAAACAAACATT+AGG | - | chr4.1:16245318-16245337 | None:intergenic | 40.0% | |
| GAGATTGTTGCAGAGAAGAA+AGG | + | chr4.1:16245194-16245213 | MS.gene34926:CDS | 40.0% | |
| GCAACGTTTGTTTGTATGAC+AGG | + | chr4.1:16246658-16246677 | MS.gene34926:intron | 40.0% | |
| GCAGTGATGATTTATGGTTG+TGG | + | chr4.1:16245121-16245140 | MS.gene34926:intron | 40.0% | |
| GGAAAAGTGAAATACGTGGA+GGG | - | chr4.1:16245560-16245579 | None:intergenic | 40.0% | |
| GGCAAGTGAAGAAGAAATGA+TGG | + | chr4.1:16245795-16245814 | MS.gene34926:intron | 40.0% | |
| TACACTTGAGTCACACAATC+AGG | + | chr4.1:16246985-16247004 | MS.gene34926:intron | 40.0% | |
| TAGAACACTTGCAGCTAACA+AGG | + | chr4.1:16246132-16246151 | MS.gene34926:CDS | 40.0% | |
| TAGAAGCTTATGCACGAAGA+AGG | + | chr4.1:16245919-16245938 | MS.gene34926:intron | 40.0% | |
| TCATTGCGTCAAAGTTGAGA+AGG | + | chr4.1:16247711-16247730 | MS.gene34926:CDS | 40.0% | |
| TCTAATCTAACTCGGATACG+GGG | - | chr4.1:16246508-16246527 | None:intergenic | 40.0% | |
| TGCTGACAAGATTTGCAACA+AGG | + | chr4.1:16247367-16247386 | MS.gene34926:intron | 40.0% | |
| TGGAATCACCACTCAAGTAA+TGG | - | chr4.1:16247552-16247571 | None:intergenic | 40.0% | |
| TGTAGAAGCCATTACTTGAG+TGG | + | chr4.1:16247541-16247560 | MS.gene34926:intron | 40.0% | |
| TGTTTAATTGTGCAGGGAAC+CGG | + | chr4.1:16247097-16247116 | MS.gene34926:intron | 40.0% | |
| TTAAGGTGGAATTCACGGAT+GGG | + | chr4.1:16247173-16247192 | MS.gene34926:CDS | 40.0% | |
| TTGACGCAATGAACTTTGAC+AGG | - | chr4.1:16247703-16247722 | None:intergenic | 40.0% | |
| TTGCGAGTATCCAATTGATC+TGG | + | chr4.1:16247123-16247142 | MS.gene34926:CDS | 40.0% | |
| ! | AGCTTCTCTTGATAGCATAG+TGG | - | chr4.1:16247219-16247238 | None:intergenic | 40.0% |
| ! | TCTGTGTATTTTCCCATGCA+AGG | + | chr4.1:16246233-16246252 | MS.gene34926:intron | 40.0% |
| ! | TTTAAGGTGGAATTCACGGA+TGG | + | chr4.1:16247172-16247191 | MS.gene34926:CDS | 40.0% |
| !!! | GCGGTGGTATTTTTTTGTAG+CGG | + | chr4.1:16245244-16245263 | MS.gene34926:intron | 40.0% |
| ACACCAAGTAGCAAAGTGGT+TGG | + | chr4.1:16247607-16247626 | MS.gene34926:CDS | 45.0% | |
| ATGAGTTGCGCATCAAGTAC+AGG | + | chr4.1:16246534-16246553 | MS.gene34926:intron | 45.0% | |
| CAAGTACAGGACATATGTGG+TGG | + | chr4.1:16246547-16246566 | MS.gene34926:intron | 45.0% | |
| CACCAAGTAGCAAAGTGGTT+GGG | + | chr4.1:16247608-16247627 | MS.gene34926:CDS | 45.0% | |
| GGGAAAAGTGAAATACGTGG+AGG | - | chr4.1:16245561-16245580 | None:intergenic | 45.0% | |
| GTGGTTGGGAAAAGATTAGC+TGG | + | chr4.1:16247622-16247641 | MS.gene34926:CDS | 45.0% | |
| TCATACCTACAGCCTTGCAT+GGG | - | chr4.1:16246248-16246267 | None:intergenic | 45.0% | |
| TTCCCAACCACTTTGCTACT+TGG | - | chr4.1:16247613-16247632 | None:intergenic | 45.0% | |
| ! | AAAAGATTAGCTGGCAGCGT+GGG | + | chr4.1:16247631-16247650 | MS.gene34926:CDS | 45.0% |
| ! | ATGGTGGTGATTTCCTGCAA+TGG | + | chr4.1:16245285-16245304 | MS.gene34926:intron | 45.0% |
| ! | ATTTTCCCATGCAAGGCTGT+AGG | + | chr4.1:16246240-16246259 | MS.gene34926:intron | 45.0% |
| ! | TGCACGAAGAAGGTTTTCGA+AGG | + | chr4.1:16245929-16245948 | MS.gene34926:intron | 45.0% |
| !! | ACAAAGAAGGCGTTCCATAG+TGG | + | chr4.1:16247064-16247083 | MS.gene34926:intron | 45.0% |
| !! | ATAGATGGGCTACACATGCA+TGG | - | chr4.1:16246321-16246340 | None:intergenic | 45.0% |
| !! | GAAAGGCTTGCTGCAACTTT+AGG | + | chr4.1:16245211-16245230 | MS.gene34926:CDS | 45.0% |
| !! | AAAAATCAAAATTATAATAA+TGG | - | chr4.1:16246455-16246474 | None:intergenic | 5.0% |
| AAACCTAGCGTTCATCAGCG+AGG | - | chr4.1:16244983-16245002 | None:intergenic | 50.0% | |
| ATGAGAGACCTGAGAACAGC+CGG | + | chr4.1:16244943-16244962 | MS.gene34926:CDS | 50.0% | |
| CCCTCTTGAACATGCTCCAA+CGG | - | chr4.1:16246073-16246092 | None:intergenic | 50.0% | |
| CCGTTGGAGCATGTTCAAGA+GGG | + | chr4.1:16246070-16246089 | MS.gene34926:CDS | 50.0% | |
| CGAGGTTGCAAGTGTAGATC+CGG | - | chr4.1:16244965-16244984 | None:intergenic | 50.0% | |
| CGATGAATATCAGACGCGCT+AGG | + | chr4.1:16246915-16246934 | MS.gene34926:intron | 50.0% | |
| GCTGATGAACGCTAGGTTTG+AGG | + | chr4.1:16244984-16245003 | MS.gene34926:CDS | 50.0% | |
| GTCATACCTACAGCCTTGCA+TGG | - | chr4.1:16246249-16246268 | None:intergenic | 50.0% | |
| TCCGTTGGAGCATGTTCAAG+AGG | + | chr4.1:16246069-16246088 | MS.gene34926:CDS | 50.0% | |
| TCTAACTCGGATACGGGGTT+CGG | - | chr4.1:16246503-16246522 | None:intergenic | 50.0% | |
| ! | GAAAAGATTAGCTGGCAGCG+TGG | + | chr4.1:16247630-16247649 | MS.gene34926:CDS | 50.0% |
| !!! | CACGCTGATGGTTTTGATGG+TGG | + | chr4.1:16245269-16245288 | MS.gene34926:intron | 50.0% |
| !!! | GCTCACGCTGATGGTTTTGA+TGG | + | chr4.1:16245266-16245285 | MS.gene34926:intron | 50.0% |
| CAACCTCGCTGATGAACGCT+AGG | + | chr4.1:16244977-16244996 | MS.gene34926:CDS | 55.0% | |
| GATACGGGGTTCGGATCCAA+TGG | - | chr4.1:16246494-16246513 | None:intergenic | 55.0% | |
| GTGTAGATCCGGCTGTTCTC+AGG | - | chr4.1:16244954-16244973 | None:intergenic | 55.0% | |
| TTTGTAGCGGCTCACGCTGA+TGG | + | chr4.1:16245257-16245276 | MS.gene34926:intron | 55.0% | |
| TGGCAGCGTGGGTTCGAACG+TGG | + | chr4.1:16247642-16247661 | MS.gene34926:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16244937 | 16247738 | 16244937 | ID=MS.gene34926 |
| chr4.1 | mRNA | 16244937 | 16247738 | 16244937 | ID=MS.gene34926.t1;Parent=MS.gene34926 |
| chr4.1 | exon | 16244937 | 16245041 | 16244937 | ID=MS.gene34926.t1.exon1;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16244937 | 16245041 | 16244937 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16245180 | 16245249 | 16245180 | ID=MS.gene34926.t1.exon2;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16245180 | 16245249 | 16245180 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16246068 | 16246153 | 16246068 | ID=MS.gene34926.t1.exon3;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16246068 | 16246153 | 16246068 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16246312 | 16246402 | 16246312 | ID=MS.gene34926.t1.exon4;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16246312 | 16246402 | 16246312 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16246680 | 16246704 | 16246680 | ID=MS.gene34926.t1.exon5;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16246680 | 16246704 | 16246680 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16246780 | 16246804 | 16246780 | ID=MS.gene34926.t1.exon6;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16246780 | 16246804 | 16246780 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16247112 | 16247288 | 16247112 | ID=MS.gene34926.t1.exon7;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16247112 | 16247288 | 16247112 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16247377 | 16247451 | 16247377 | ID=MS.gene34926.t1.exon8;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16247377 | 16247451 | 16247377 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| chr4.1 | exon | 16247583 | 16247738 | 16247583 | ID=MS.gene34926.t1.exon9;Parent=MS.gene34926.t1 |
| chr4.1 | CDS | 16247583 | 16247738 | 16247583 | ID=cds.MS.gene34926.t1;Parent=MS.gene34926.t1 |
| Gene Sequence |
| Protein sequence |
