Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34929.t1 | XP_024630097.1 | 100 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 8.60E-106 | 392.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34929.t1 | Q558Z3 | 50.3 | 193 | 92 | 3 | 4 | 193 | 23 | 214 | 5.8e-50 | 198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34929.t1 | A0A396GUT2 | 100.0 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 6.2e-106 | 392.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34929 | MS.gene002052 | PPI |
| MS.gene34929 | MS.gene84016 | PPI |
| MS.gene60096 | MS.gene34929 | PPI |
| MS.gene073613 | MS.gene34929 | PPI |
| MS.gene34929 | MS.gene00621 | PPI |
| MS.gene016615 | MS.gene34929 | PPI |
| MS.gene042336 | MS.gene34929 | PPI |
| MS.gene34929 | MS.gene05320 | PPI |
| MS.gene34929 | MS.gene59983 | PPI |
| MS.gene34929 | MS.gene88509 | PPI |
| MS.gene34929 | MS.gene068200 | PPI |
| MS.gene34929 | MS.gene81861 | PPI |
| MS.gene039360 | MS.gene34929 | PPI |
| MS.gene34929 | MS.gene047316 | PPI |
| MS.gene047198 | MS.gene34929 | PPI |
| MS.gene040651 | MS.gene34929 | PPI |
| MS.gene34929 | MS.gene035458 | PPI |
| MS.gene34929 | MS.gene00619 | PPI |
| MS.gene09414 | MS.gene34929 | PPI |
| MS.gene34929 | MS.gene30239 | PPI |
| MS.gene34929 | MS.gene056221 | PPI |
| MS.gene34929 | MS.gene072056 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34929.t1 | MTR_0332s0040 | 100.000 | 187 | 0 | 0 | 1 | 187 | 1 | 187 | 4.28e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34929.t1 | AT1G73820 | 78.238 | 193 | 42 | 0 | 1 | 193 | 1 | 193 | 2.66e-119 | 336 |
| MS.gene34929.t1 | AT1G73820 | 78.238 | 193 | 42 | 0 | 1 | 193 | 17 | 209 | 2.66e-119 | 337 |
Find 36 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAACATGGTCTCTATTA+TGG | 0.222869 | 4.1:+16533537 | None:intergenic |
| AACGGTATTGATAGTCAATT+TGG | 0.243908 | 4.1:-16533510 | MS.gene34929:CDS |
| GAATCCTGCCAATGCTTAAA+AGG | 0.252032 | 4.1:-16535009 | MS.gene34929:CDS |
| GAACCAAATGTCTATGAATT+TGG | 0.253761 | 4.1:-16536239 | MS.gene34929:CDS |
| GGGTTCGATGTATCTTCTTA+TGG | 0.256941 | 4.1:-16536302 | MS.gene34929:CDS |
| GTGCTTCCATGCTTCTGTTT+TGG | 0.284804 | 4.1:+16536345 | None:intergenic |
| AAGGAATGCAGCTGTGAAAT+TGG | 0.321236 | 4.1:-16534990 | MS.gene34929:CDS |
| GTACCAAATTCATAGACATT+TGG | 0.395982 | 4.1:+16536236 | None:intergenic |
| TAAAGTCTGTCTTGCTCCTA+TGG | 0.406647 | 4.1:+16533460 | None:intergenic |
| GATGTATCTTCTTATGGAAC+AGG | 0.408399 | 4.1:-16536296 | MS.gene34929:CDS |
| GAGTGGAGCTACAAGCGAAA+TGG | 0.467833 | 4.1:-16535031 | MS.gene34929:intron |
| AGATTGAAGCTGTTGAATCA+TGG | 0.474304 | 4.1:-16533224 | MS.gene34929:CDS |
| GTATTTGATATGGTTGTTGA+AGG | 0.475037 | 4.1:-16534899 | MS.gene34929:intron |
| ACTAGCAATAACATCATCAA+TGG | 0.487232 | 4.1:+16533194 | None:intergenic |
| TCATCAAGCATATATTTGTA+AGG | 0.512106 | 4.1:+16536212 | None:intergenic |
| TGAAATTGGCACCTCAAAGA+TGG | 0.526468 | 4.1:-16534976 | MS.gene34929:CDS |
| GATTGAAGCTGTTGAATCAT+GGG | 0.531323 | 4.1:-16533223 | MS.gene34929:CDS |
| GGTTCTCTGAGGGAAGGACC+AGG | 0.532924 | 4.1:+16536257 | None:intergenic |
| GGTATTGATAGTCAATTTGG+AGG | 0.563161 | 4.1:-16533507 | MS.gene34929:CDS |
| GGTACCCACGTTAAGCTCCC+TGG | 0.567847 | 4.1:-16536275 | MS.gene34929:CDS |
| CATAGACATTTGGTTCTCTG+AGG | 0.569922 | 4.1:+16536246 | None:intergenic |
| ATAGACATTTGGTTCTCTGA+GGG | 0.571121 | 4.1:+16536247 | None:intergenic |
| ATCCAACCAAAACAGAAGCA+TGG | 0.589136 | 4.1:-16536351 | MS.gene34929:CDS |
| AATGAAGTTTCGTTACGCCA+TGG | 0.597155 | 4.1:-16536381 | MS.gene34929:CDS |
| AAGGACCAGGGAGCTTAACG+TGG | 0.600033 | 4.1:+16536270 | None:intergenic |
| ACATTTGGTTCTCTGAGGGA+AGG | 0.600394 | 4.1:+16536251 | None:intergenic |
| AACCACGAGGAAGCCGCCAT+AGG | 0.612265 | 4.1:-16533476 | MS.gene34929:CDS |
| TGGCAAGAAAATGCTGCTGA+TGG | 0.614390 | 4.1:-16534956 | MS.gene34929:CDS |
| CTCCTATGGCGGCTTCCTCG+TGG | 0.618433 | 4.1:+16533474 | None:intergenic |
| GTTCTCTGAGGGAAGGACCA+GGG | 0.632137 | 4.1:+16536258 | None:intergenic |
| AGTCTGTCTTGCTCCTATGG+CGG | 0.641994 | 4.1:+16533463 | None:intergenic |
| TTGGTTGGATGAACAAACCA+TGG | 0.652936 | 4.1:+16536364 | None:intergenic |
| TGAAGCTGTTGAATCATGGG+AGG | 0.684017 | 4.1:-16533220 | MS.gene34929:CDS |
| TGCTGATGGCATATTTGATG+TGG | 0.692771 | 4.1:-16534942 | MS.gene34929:CDS |
| AGGACCAGGGAGCTTAACGT+GGG | 0.701054 | 4.1:+16536271 | None:intergenic |
| GGAGGTCAAAGATAACCACG+AGG | 0.849826 | 4.1:-16533489 | MS.gene34929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAAGTAAACAAA+AGG | + | chr4.1:16533392-16533411 | None:intergenic | 10.0% |
| !! | AAATAATTAAGTAAACAAAA+GGG | + | chr4.1:16533391-16533410 | None:intergenic | 10.0% |
| !! | AATGTGATATAAAAAAAAAA+GGG | + | chr4.1:16535664-16535683 | None:intergenic | 10.0% |
| !! | TAAAAAATGCAAATAAAAAA+AGG | + | chr4.1:16533365-16533384 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTTTAGTTTTA+TGG | - | chr4.1:16533517-16533536 | MS.gene34929:CDS | 10.0% |
| !!! | AATTTAAGTTTTAGTTTTAT+GGG | - | chr4.1:16533518-16533537 | MS.gene34929:CDS | 10.0% |
| !!! | GAGTTATATATTTTTAATTT+TGG | - | chr4.1:16536214-16536233 | MS.gene34929:CDS | 10.0% |
| !!! | TACTTAATTATTTTAGTTTT+AGG | - | chr4.1:16533398-16533417 | MS.gene34929:intron | 10.0% |
| !!! | TTTTGTTTTAAAAGAATTTT+AGG | - | chr4.1:16533906-16533925 | MS.gene34929:intron | 10.0% |
| !! | AAAATGAAAATTTAGATTTG+GGG | - | chr4.1:16533835-16533854 | MS.gene34929:intron | 15.0% |
| !! | AAATTAAAAACAAGCAAAAT+TGG | + | chr4.1:16533566-16533585 | None:intergenic | 15.0% |
| !! | CAATGTGATATAAAAAAAAA+AGG | + | chr4.1:16535665-16535684 | None:intergenic | 15.0% |
| !! | GAAAATGAAAATTTAGATTT+GGG | - | chr4.1:16533834-16533853 | MS.gene34929:intron | 15.0% |
| !! | TGAAAATGAAAATTTAGATT+TGG | - | chr4.1:16533833-16533852 | MS.gene34929:intron | 15.0% |
| !!! | AAAAAGAAAATGAAATTTTC+AGG | - | chr4.1:16534234-16534253 | MS.gene34929:intron | 15.0% |
| !!! | ATTTAAGTTTTAGTTTTATG+GGG | - | chr4.1:16533519-16533538 | MS.gene34929:CDS | 15.0% |
| !!! | GATTTTACTATTTAAGTTAT+TGG | - | chr4.1:16535809-16535828 | MS.gene34929:intron | 15.0% |
| !! | AAATGAAAATTTAGATTTGG+GGG | - | chr4.1:16533836-16533855 | MS.gene34929:intron | 20.0% |
| !! | AGACATGAAAATATTAAAAC+AGG | + | chr4.1:16536249-16536268 | None:intergenic | 20.0% |
| !! | TGATGATACTAAGAAATATT+GGG | - | chr4.1:16534340-16534359 | MS.gene34929:intron | 20.0% |
| !! | TGATGTTATAAATAAGTGAT+TGG | - | chr4.1:16535147-16535166 | MS.gene34929:intron | 20.0% |
| !!! | AGATTTGTGTATTTTTCATA+AGG | - | chr4.1:16533644-16533663 | MS.gene34929:intron | 20.0% |
| !!! | ATTAACATTAATTTGTCTAC+AGG | - | chr4.1:16533756-16533775 | MS.gene34929:intron | 20.0% |
| !!! | TGAAGAAAAAGTATTTGATA+TGG | - | chr4.1:16534614-16534633 | MS.gene34929:intron | 20.0% |
| !!! | TTTAATATTTTCATGTCTCA+TGG | - | chr4.1:16536251-16536270 | MS.gene34929:CDS | 20.0% |
| !!! | TTTAGTTTTAGTAGAATTTC+AGG | - | chr4.1:16533588-16533607 | MS.gene34929:intron | 20.0% |
| !!! | TTTTTCAGACAAAAAGTTAA+GGG | - | chr4.1:16535845-16535864 | MS.gene34929:intron | 20.0% |
| !!! | TTTTTTCAGACAAAAAGTTA+AGG | - | chr4.1:16535844-16535863 | MS.gene34929:intron | 20.0% |
| ! | AAAAGGAGTAAAAAAGACAA+AGG | + | chr4.1:16534655-16534674 | None:intergenic | 25.0% |
| ! | AATGAAAATTTAGATTTGGG+GGG | - | chr4.1:16533837-16533856 | MS.gene34929:intron | 25.0% |
| ! | ATAAAAAAAGGATACAGTTC+AGG | + | chr4.1:16533353-16533372 | None:intergenic | 25.0% |
| ! | ATAAAACATGGTCTCTATTA+TGG | + | chr4.1:16535989-16536008 | None:intergenic | 25.0% |
| ! | ATTAATGTTAATATCGTGTC+TGG | + | chr4.1:16533748-16533767 | None:intergenic | 25.0% |
| ! | CTGATGATACTAAGAAATAT+TGG | - | chr4.1:16534339-16534358 | MS.gene34929:intron | 25.0% |
| ! | GATGATACTAAGAAATATTG+GGG | - | chr4.1:16534341-16534360 | MS.gene34929:intron | 25.0% |
| ! | TAAAAAAAGGATACAGTTCA+GGG | + | chr4.1:16533352-16533371 | None:intergenic | 25.0% |
| ! | TAACTAATGAGTCATCATAA+TGG | + | chr4.1:16535113-16535132 | None:intergenic | 25.0% |
| ! | TACAAAACAAGAATTCGAAA+TGG | + | chr4.1:16534446-16534465 | None:intergenic | 25.0% |
| ! | TAGGATTTAGTGAATAGTTT+GGG | - | chr4.1:16533994-16534013 | MS.gene34929:intron | 25.0% |
| ! | TCAGCTAAAAAAAATCGAAA+GGG | + | chr4.1:16533816-16533835 | None:intergenic | 25.0% |
| ! | TCATAAGGATTTATGATGAT+AGG | - | chr4.1:16533659-16533678 | MS.gene34929:intron | 25.0% |
| ! | TCATCAAGCATATATTTGTA+AGG | + | chr4.1:16533314-16533333 | None:intergenic | 25.0% |
| ! | TTAGATCAATCAAAGAGAAA+AGG | + | chr4.1:16534672-16534691 | None:intergenic | 25.0% |
| ! | TTAGGATTTAGTGAATAGTT+TGG | - | chr4.1:16533993-16534012 | MS.gene34929:intron | 25.0% |
| ! | TTCAGCTAAAAAAAATCGAA+AGG | + | chr4.1:16533817-16533836 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAACAATCAAAA+GGG | + | chr4.1:16533499-16533518 | None:intergenic | 25.0% |
| ! | TTTCAGCTAAAACAATCAAA+AGG | + | chr4.1:16533500-16533519 | None:intergenic | 25.0% |
| ! | TTTCTGTAATGAATCAAGAT+AGG | - | chr4.1:16534980-16534999 | MS.gene34929:CDS | 25.0% |
| !! | AACTGTTATGAACAACTTTT+TGG | + | chr4.1:16535282-16535301 | None:intergenic | 25.0% |
| !! | ACTTTCTTTTCAAAAGACAA+GGG | - | chr4.1:16533201-16533220 | MS.gene34929:CDS | 25.0% |
| !! | AGTTGCATTTTATATCTTAG+TGG | - | chr4.1:16535050-16535069 | MS.gene34929:intron | 25.0% |
| !! | ATACCGTTTTCAATAAAACA+TGG | + | chr4.1:16536001-16536020 | None:intergenic | 25.0% |
| !! | ATGTTTAGAGTAGTTAGTTA+TGG | - | chr4.1:16535211-16535230 | MS.gene34929:intron | 25.0% |
| !! | TGTATAATCTATGAAGTACT+GGG | - | chr4.1:16534027-16534046 | MS.gene34929:intron | 25.0% |
| !!! | AGACCATGTTTTATTGAAAA+CGG | - | chr4.1:16535995-16536014 | MS.gene34929:intron | 25.0% |
| !!! | TTTCGAATTCTTGTTTTGTA+TGG | - | chr4.1:16534446-16534465 | MS.gene34929:intron | 25.0% |
| ACTAGCAATAACATCATCAA+TGG | + | chr4.1:16536332-16536351 | None:intergenic | 30.0% | |
| AGGATTTATGATGATAGGTT+AGG | - | chr4.1:16533664-16533683 | MS.gene34929:intron | 30.0% | |
| ATAAAAAAAAAAGGGCAACC+CGG | + | chr4.1:16535656-16535675 | None:intergenic | 30.0% | |
| ATTGTAGAGAAAACTCTTTG+AGG | - | chr4.1:16534769-16534788 | MS.gene34929:intron | 30.0% | |
| CTACATAGTTGCAATTGTTA+TGG | - | chr4.1:16534903-16534922 | MS.gene34929:CDS | 30.0% | |
| CTATCCATGAAATATATCCA+TGG | + | chr4.1:16536281-16536300 | None:intergenic | 30.0% | |
| CTTACCATGGATATATTTCA+TGG | - | chr4.1:16536274-16536293 | MS.gene34929:CDS | 30.0% | |
| GAACATAGATACTAATGCAA+TGG | - | chr4.1:16536165-16536184 | MS.gene34929:intron | 30.0% | |
| GAACCAAATGTCTATGAATT+TGG | - | chr4.1:16533284-16533303 | MS.gene34929:intron | 30.0% | |
| GAATTGTGTGTTTCTCATAA+AGG | - | chr4.1:16533955-16533974 | MS.gene34929:intron | 30.0% | |
| GTACCAAATTCATAGACATT+TGG | + | chr4.1:16533290-16533309 | None:intergenic | 30.0% | |
| GTATTTGATATGGTTGTTGA+AGG | - | chr4.1:16534624-16534643 | MS.gene34929:intron | 30.0% | |
| GTGAAGACGAATAAAAAGTT+TGG | + | chr4.1:16534744-16534763 | None:intergenic | 30.0% | |
| GTGTATAATCTATGAAGTAC+TGG | - | chr4.1:16534026-16534045 | MS.gene34929:intron | 30.0% | |
| TAATCAGTAGCAAGATACAT+AGG | - | chr4.1:16534957-16534976 | MS.gene34929:CDS | 30.0% | |
| TAGGATTGAATGCATAGTAT+GGG | - | chr4.1:16533683-16533702 | MS.gene34929:intron | 30.0% | |
| TGAATAGTTTGGGAAAAAGA+TGG | - | chr4.1:16534004-16534023 | MS.gene34929:intron | 30.0% | |
| TGTTTCTCATAAAGGATTGA+GGG | - | chr4.1:16533963-16533982 | MS.gene34929:intron | 30.0% | |
| TTAGGATTGAATGCATAGTA+TGG | - | chr4.1:16533682-16533701 | MS.gene34929:intron | 30.0% | |
| TTTCATATACAACACTTTCG+TGG | - | chr4.1:16535754-16535773 | MS.gene34929:intron | 30.0% | |
| ! | AATAATTGAGTTGTCAGTGT+CGG | - | chr4.1:16534128-16534147 | MS.gene34929:intron | 30.0% |
| ! | ACAGACTTTAGATTTTTGTC+AGG | - | chr4.1:16536076-16536095 | MS.gene34929:intron | 30.0% |
| ! | ATTTTGTAATTGAGGATGAG+GGG | - | chr4.1:16534364-16534383 | MS.gene34929:intron | 30.0% |
| ! | CACTTTCTTTTCAAAAGACA+AGG | - | chr4.1:16533200-16533219 | MS.gene34929:CDS | 30.0% |
| ! | GATTTTGTAATTGAGGATGA+GGG | - | chr4.1:16534363-16534382 | MS.gene34929:intron | 30.0% |
| ! | GTTTTTCTTAAGCATAAGTG+AGG | - | chr4.1:16533420-16533439 | MS.gene34929:intron | 30.0% |
| ! | TACAGGAAGATGTGTATTTT+AGG | - | chr4.1:16533773-16533792 | MS.gene34929:intron | 30.0% |
| ! | TAGGCCTAAACTATTTTCTT+GGG | + | chr4.1:16535006-16535025 | None:intergenic | 30.0% |
| ! | TATTGGGGATTTTGTAATTG+AGG | - | chr4.1:16534356-16534375 | MS.gene34929:intron | 30.0% |
| ! | TGTTATATCACATTGATAGC+AGG | - | chr4.1:16535463-16535482 | MS.gene34929:intron | 30.0% |
| ! | TTAGGCCTAAACTATTTTCT+TGG | + | chr4.1:16535007-16535026 | None:intergenic | 30.0% |
| !! | AACGGTATTGATAGTCAATT+TGG | - | chr4.1:16536013-16536032 | MS.gene34929:intron | 30.0% |
| !! | TAAAGTTGTTTTCATGTGAC+TGG | - | chr4.1:16535509-16535528 | MS.gene34929:intron | 30.0% |
| !!! | CTAGTTTTGAGAAACAACAT+CGG | - | chr4.1:16536347-16536366 | MS.gene34929:CDS | 30.0% |
| !!! | TCTTGTTTTGTATGGTGAAA+TGG | - | chr4.1:16534454-16534473 | MS.gene34929:intron | 30.0% |
| AAGTTAAGGGCAAGATACAT+AGG | - | chr4.1:16535858-16535877 | MS.gene34929:intron | 35.0% | |
| AGATTGAAGCTGTTGAATCA+TGG | - | chr4.1:16536299-16536318 | MS.gene34929:CDS | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr4.1:16535559-16535578 | MS.gene34929:intron | 35.0% | |
| ATCATAGTCCTTAGCTACTT+AGG | + | chr4.1:16535025-16535044 | None:intergenic | 35.0% | |
| ATCTGACACTGGTAGTAATT+TGG | - | chr4.1:16534076-16534095 | MS.gene34929:intron | 35.0% | |
| ATGCATAGTATGGGAAACAT+TGG | - | chr4.1:16533692-16533711 | MS.gene34929:intron | 35.0% | |
| CAAAATTGCCAGCATATCAA+AGG | + | chr4.1:16534304-16534323 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr4.1:16535564-16535583 | MS.gene34929:intron | 35.0% | |
| GATGTATCTTCTTATGGAAC+AGG | - | chr4.1:16533227-16533246 | MS.gene34929:intron | 35.0% | |
| GATTGAAGCTGTTGAATCAT+GGG | - | chr4.1:16536300-16536319 | MS.gene34929:CDS | 35.0% | |
| GTGTATAATCTACGAAGTTC+TGG | - | chr4.1:16533714-16533733 | MS.gene34929:intron | 35.0% | |
| GTGTTTCTCATAAAGGATTG+AGG | - | chr4.1:16533962-16533981 | MS.gene34929:intron | 35.0% | |
| GTTAATATCGTGTCTGGTAT+CGG | + | chr4.1:16533742-16533761 | None:intergenic | 35.0% | |
| TAGGCCCAAGAAAATAGTTT+AGG | - | chr4.1:16534999-16535018 | MS.gene34929:CDS | 35.0% | |
| TAGTAATTTGGGAATGACTC+TGG | - | chr4.1:16534088-16534107 | MS.gene34929:intron | 35.0% | |
| TCACTTTCGATCAGAAGTAA+CGG | - | chr4.1:16534160-16534179 | MS.gene34929:intron | 35.0% | |
| TCTGACACTGGTAGTAATTT+GGG | - | chr4.1:16534077-16534096 | MS.gene34929:intron | 35.0% | |
| ! | ATATCACATTGATAGCAGGA+GGG | - | chr4.1:16535467-16535486 | MS.gene34929:intron | 35.0% |
| ! | CTTTTAACAGAACATGCGTT+TGG | - | chr4.1:16535396-16535415 | MS.gene34929:intron | 35.0% |
| ! | GACTTTAGATTTTTGTCAGG+AGG | - | chr4.1:16536079-16536098 | MS.gene34929:intron | 35.0% |
| ! | GAGTCATATCATGTTCTAGA+AGG | - | chr4.1:16535075-16535094 | MS.gene34929:intron | 35.0% |
| ! | GGATTTTGTAATTGAGGATG+AGG | - | chr4.1:16534362-16534381 | MS.gene34929:intron | 35.0% |
| ! | TATATCACATTGATAGCAGG+AGG | - | chr4.1:16535466-16535485 | MS.gene34929:intron | 35.0% |
| ! | TGATATGCTGGCAATTTTGT+TGG | - | chr4.1:16534305-16534324 | MS.gene34929:intron | 35.0% |
| !! | ATAGACATTTGGTTCTCTGA+GGG | + | chr4.1:16533279-16533298 | None:intergenic | 35.0% |
| !! | GGTATTGATAGTCAATTTGG+AGG | - | chr4.1:16536016-16536035 | MS.gene34929:intron | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr4.1:16535564-16535583 | None:intergenic | 35.0% |
| AAGGAATGCAGCTGTGAAAT+TGG | - | chr4.1:16534533-16534552 | MS.gene34929:intron | 40.0% | |
| AGTTTAGGCCTAAGTAGCTA+AGG | - | chr4.1:16535014-16535033 | MS.gene34929:CDS | 40.0% | |
| ATCCAACCAAAACAGAAGCA+TGG | - | chr4.1:16533172-16533191 | MS.gene34929:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr4.1:16535558-16535577 | MS.gene34929:intron | 40.0% | |
| CATAAAGGATTGAGGGTGAT+AGG | - | chr4.1:16533970-16533989 | MS.gene34929:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.1:16535590-16535609 | MS.gene34929:intron | 40.0% | |
| CTTCTGATCGAAAGTGAATC+AGG | + | chr4.1:16534157-16534176 | None:intergenic | 40.0% | |
| GAATCCTGCCAATGCTTAAA+AGG | - | chr4.1:16534514-16534533 | MS.gene34929:intron | 40.0% | |
| GATACTAAGACATCTGACAC+TGG | - | chr4.1:16534065-16534084 | MS.gene34929:intron | 40.0% | |
| GCAAGATACATAGGTTTCTC+TGG | - | chr4.1:16535867-16535886 | MS.gene34929:intron | 40.0% | |
| GGAATGATTTCTGTACGCTT+TGG | - | chr4.1:16535888-16535907 | MS.gene34929:intron | 40.0% | |
| GGATGTATCCTTAACAAGAG+TGG | - | chr4.1:16534475-16534494 | MS.gene34929:intron | 40.0% | |
| GGGTTCGATGTATCTTCTTA+TGG | - | chr4.1:16533221-16533240 | MS.gene34929:CDS | 40.0% | |
| TAAAGTCTGTCTTGCTCCTA+TGG | + | chr4.1:16536066-16536085 | None:intergenic | 40.0% | |
| TAATTTGGGAATGACTCTGG+TGG | - | chr4.1:16534091-16534110 | MS.gene34929:intron | 40.0% | |
| TGAAATTGGCACCTCAAAGA+TGG | - | chr4.1:16534547-16534566 | MS.gene34929:intron | 40.0% | |
| TGCTGATGGCATATTTGATG+TGG | - | chr4.1:16534581-16534600 | MS.gene34929:intron | 40.0% | |
| TTCGAAATGGCATTTCCAAG+AGG | + | chr4.1:16534433-16534452 | None:intergenic | 40.0% | |
| TTGGTTGGATGAACAAACCA+TGG | + | chr4.1:16533162-16533181 | None:intergenic | 40.0% | |
| TTGTAGCTCCACTCTTGTTA+AGG | + | chr4.1:16534486-16534505 | None:intergenic | 40.0% | |
| ! | ACTCTTTGAGGAGCATGTTT+CGG | - | chr4.1:16534781-16534800 | MS.gene34929:intron | 40.0% |
| ! | GAGTGTTTTGCATCTGTTGT+TGG | - | chr4.1:16534406-16534425 | MS.gene34929:intron | 40.0% |
| ! | GCATTTTCTTGCCATCTTTG+AGG | + | chr4.1:16534561-16534580 | None:intergenic | 40.0% |
| ! | GCTGCATTCCTTTTAAGCAT+TGG | + | chr4.1:16534525-16534544 | None:intergenic | 40.0% |
| ! | TATCACATTGATAGCAGGAG+GGG | - | chr4.1:16535468-16535487 | MS.gene34929:intron | 40.0% |
| ! | TTTGGAGTCACAACTTTGCA+AGG | - | chr4.1:16535414-16535433 | MS.gene34929:intron | 40.0% |
| !! | CATAGACATTTGGTTCTCTG+AGG | + | chr4.1:16533280-16533299 | None:intergenic | 40.0% |
| !! | GTTGTTTTCATGTGACTGGA+AGG | - | chr4.1:16535513-16535532 | MS.gene34929:intron | 40.0% |
| !!! | CATTCCTTTTAAGCATTGGC+AGG | + | chr4.1:16534521-16534540 | None:intergenic | 40.0% |
| !!! | GTTTTGAGAAACAACATCGG+CGG | - | chr4.1:16536350-16536369 | MS.gene34929:CDS | 40.0% |
| !!! | TTCCATGCTTCTGTTTTGGT+TGG | + | chr4.1:16533177-16533196 | None:intergenic | 40.0% |
| AGGATTGAGGGTGATAGGTT+AGG | - | chr4.1:16533975-16533994 | MS.gene34929:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.1:16535589-16535608 | MS.gene34929:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.1:16535586-16535605 | MS.gene34929:intron | 45.0% | |
| TCATGTCTCATGGCTTACCA+TGG | - | chr4.1:16536261-16536280 | MS.gene34929:CDS | 45.0% | |
| TGAAGCTGTTGAATCATGGG+AGG | - | chr4.1:16536303-16536322 | MS.gene34929:CDS | 45.0% | |
| TGAGGATGAGGGGTTAGATT+AGG | - | chr4.1:16534374-16534393 | MS.gene34929:intron | 45.0% | |
| TGGCAAGAAAATGCTGCTGA+TGG | - | chr4.1:16534567-16534586 | MS.gene34929:intron | 45.0% | |
| TTCATGTGACTGGAAGGTCA+CGG | - | chr4.1:16535519-16535538 | MS.gene34929:intron | 45.0% | |
| ! | CCAGCATATCAAAGGCACAA+CGG | + | chr4.1:16534296-16534315 | None:intergenic | 45.0% |
| ! | GTGCTTCCATGCTTCTGTTT+TGG | + | chr4.1:16533181-16533200 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.1:16535553-16535572 | None:intergenic | 45.0% |
| !! | ACATTTGGTTCTCTGAGGGA+AGG | + | chr4.1:16533275-16533294 | None:intergenic | 45.0% |
| !! | CTTTCGTGGTAGTTTGCTGA+TGG | - | chr4.1:16535768-16535787 | MS.gene34929:intron | 45.0% |
| !! | TGAAGTACTGGGACATACAC+TGG | - | chr4.1:16534038-16534057 | MS.gene34929:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTATCTT+TGG | - | chr4.1:16535349-16535368 | MS.gene34929:intron | 5.0% |
| AGTCTGTCTTGCTCCTATGG+CGG | + | chr4.1:16536063-16536082 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.1:16535497-16535516 | None:intergenic | 50.0% | |
| CCGTTGTGCCTTTGATATGC+TGG | - | chr4.1:16534293-16534312 | MS.gene34929:intron | 50.0% | |
| GAGTGGAGCTACAAGCGAAA+TGG | - | chr4.1:16534492-16534511 | MS.gene34929:intron | 50.0% | |
| GCATCTGTTGTTGGACCTCT+TGG | - | chr4.1:16534415-16534434 | MS.gene34929:intron | 50.0% | |
| GGAGGTCAAAGATAACCACG+AGG | - | chr4.1:16536034-16536053 | MS.gene34929:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr4.1:16535520-16535539 | MS.gene34929:intron | 50.0% | |
| AAGGACCAGGGAGCTTAACG+TGG | + | chr4.1:16533256-16533275 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.1:16535532-16535551 | MS.gene34929:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr4.1:16535630-16535649 | None:intergenic | 55.0% | |
| AGGACCAGGGAGCTTAACGT+GGG | + | chr4.1:16533255-16533274 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr4.1:16535629-16535648 | None:intergenic | 55.0% | |
| GATAGCAGGAGGGGTAACCT+TGG | - | chr4.1:16535477-16535496 | MS.gene34929:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr4.1:16535634-16535653 | MS.gene34929:intron | 55.0% |
| ! | GTTCTCTGAGGGAAGGACCA+GGG | + | chr4.1:16533268-16533287 | None:intergenic | 55.0% |
| AACCACGAGGAAGCCGCCAT+AGG | - | chr4.1:16536047-16536066 | MS.gene34929:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.1:16535486-16535505 | MS.gene34929:intron | 60.0% | |
| GGTACCCACGTTAAGCTCCC+TGG | - | chr4.1:16533248-16533267 | MS.gene34929:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr4.1:16535602-16535621 | MS.gene34929:intron | 60.0% |
| ! | GGTTCTCTGAGGGAAGGACC+AGG | + | chr4.1:16533269-16533288 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr4.1:16535635-16535654 | MS.gene34929:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr4.1:16535617-16535636 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr4.1:16535604-16535623 | None:intergenic | 65.0% | |
| CTCCTATGGCGGCTTCCTCG+TGG | + | chr4.1:16536052-16536071 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr4.1:16535617-16535636 | MS.gene34929:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr4.1:16535618-16535637 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr4.1:16535618-16535637 | MS.gene34929:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr4.1:16535619-16535638 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr4.1:16535623-16535642 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr4.1:16535624-16535643 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16533143 | 16536402 | 16533143 | ID=MS.gene34929 |
| chr4.1 | mRNA | 16533143 | 16536402 | 16533143 | ID=MS.gene34929.t1;Parent=MS.gene34929 |
| chr4.1 | exon | 16536188 | 16536402 | 16536188 | ID=MS.gene34929.t1.exon1;Parent=MS.gene34929.t1 |
| chr4.1 | CDS | 16536188 | 16536402 | 16536188 | ID=cds.MS.gene34929.t1;Parent=MS.gene34929.t1 |
| chr4.1 | exon | 16534900 | 16535045 | 16534900 | ID=MS.gene34929.t1.exon2;Parent=MS.gene34929.t1 |
| chr4.1 | CDS | 16534900 | 16535045 | 16534900 | ID=cds.MS.gene34929.t1;Parent=MS.gene34929.t1 |
| chr4.1 | exon | 16533445 | 16533563 | 16533445 | ID=MS.gene34929.t1.exon3;Parent=MS.gene34929.t1 |
| chr4.1 | CDS | 16533445 | 16533563 | 16533445 | ID=cds.MS.gene34929.t1;Parent=MS.gene34929.t1 |
| chr4.1 | exon | 16533143 | 16533244 | 16533143 | ID=MS.gene34929.t1.exon4;Parent=MS.gene34929.t1 |
| chr4.1 | CDS | 16533143 | 16533244 | 16533143 | ID=cds.MS.gene34929.t1;Parent=MS.gene34929.t1 |
| Gene Sequence |
| Protein sequence |
