AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35009

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35009.t1 MTR_4g094010 97.260 146 4 0 12 157 3 148 4.60e-96 291
MS.gene35009.t1 MTR_4g094060 78.947 133 26 2 25 157 41 171 7.14e-65 210
MS.gene35009.t1 MTR_4g094050 78.195 133 27 2 25 157 41 171 3.77e-63 206
MS.gene35009.t1 MTR_4g094090 64.844 128 41 1 30 157 6 129 1.99e-49 168
MS.gene35009.t1 MTR_4g093845 60.284 141 49 3 24 161 27 163 1.68e-46 160
MS.gene35009.t1 MTR_6g066240 59.664 119 45 1 37 155 47 162 1.31e-41 147
MS.gene35009.t1 MTR_4g076940 48.387 155 71 3 6 153 35 187 2.57e-39 141
MS.gene35009.t1 MTR_4g076940 48.993 149 67 3 12 153 1 147 2.81e-38 138
MS.gene35009.t1 MTR_4g076970 53.488 129 56 2 26 153 20 145 5.01e-38 137
MS.gene35009.t1 MTR_4g076900 56.410 117 49 2 37 153 9 123 8.69e-36 130
MS.gene35009.t1 MTR_4g054020 81.250 64 12 0 93 156 4 67 4.66e-29 111
MS.gene35009.t1 MTR_2g095390 48.673 113 55 1 34 146 104 213 6.61e-29 111
MS.gene35009.t1 MTR_4g053980 53.774 106 35 5 1 94 1 104 5.61e-25 93.2
MS.gene35009.t1 MTR_1g054960 45.455 110 55 2 49 157 17 122 5.35e-22 91.7
MS.gene35009.t1 MTR_8g107450 43.925 107 57 2 54 158 64 169 1.92e-21 90.1
MS.gene35009.t1 MTR_1g096580 39.855 138 77 4 20 154 51 185 4.83e-21 89.0
MS.gene35009.t1 MTR_1g093990 41.667 132 65 4 33 154 55 184 8.05e-21 88.6
MS.gene35009.t1 MTR_7g106880 39.516 124 73 2 35 157 136 258 2.74e-20 87.0
MS.gene35009.t1 MTR_7g106880 44.762 105 56 2 53 156 3 106 3.73e-20 86.7
MS.gene35009.t1 MTR_1g054935 38.710 124 74 2 35 157 147 269 4.94e-20 86.3
MS.gene35009.t1 MTR_8g059150 46.535 101 51 2 55 154 62 160 8.02e-20 85.5
MS.gene35009.t1 MTR_1g108340 39.370 127 73 2 30 154 66 190 8.45e-20 85.5
MS.gene35009.t1 MTR_2g079980 45.545 101 52 2 55 154 27 125 8.46e-20 85.5
MS.gene35009.t1 MTR_1g108340 39.370 127 73 2 30 154 66 190 9.13e-20 85.5
MS.gene35009.t1 MTR_1g054935 42.453 106 59 2 53 157 3 107 9.52e-20 85.5
MS.gene35009.t1 MTR_7g100120 41.509 106 59 2 52 155 120 224 9.91e-20 85.5
MS.gene35009.t1 MTR_1g094660 41.322 121 60 4 37 154 501 613 5.25e-19 83.2
MS.gene35009.t1 MTR_1g094660 41.322 121 60 4 37 154 501 613 8.94e-19 82.8
MS.gene35009.t1 MTR_5g096390 44.231 104 55 2 52 154 102 203 1.17e-18 82.4
MS.gene35009.t1 MTR_5g030910 40.179 112 63 3 53 161 45 155 1.36e-18 82.0
MS.gene35009.t1 MTR_7g091350 45.455 77 37 1 37 113 3 74 3.56e-18 77.0
MS.gene35009.t1 MTR_5g025470 38.843 121 67 3 35 154 45 159 6.23e-18 80.1
MS.gene35009.t1 MTR_7g098780 32.903 155 89 3 15 155 789 942 1.03e-16 76.6
MS.gene35009.t1 MTR_7g098780 34.234 111 64 2 58 159 174 284 1.76e-14 70.5
MS.gene35009.t1 MTR_7g101780 42.157 102 56 3 55 154 510 610 1.03e-16 76.6
MS.gene35009.t1 MTR_2g078080 45.161 93 48 2 56 146 47 138 1.11e-16 76.6
MS.gene35009.t1 MTR_1g115790 38.261 115 66 3 44 154 105 218 1.22e-16 76.6
MS.gene35009.t1 MTR_2g101090 43.119 109 57 3 51 156 863 969 1.86e-16 75.9
MS.gene35009.t1 MTR_8g014360 41.121 107 58 3 51 154 897 1001 1.07e-15 73.9
MS.gene35009.t1 MTR_8g014360 41.573 89 50 1 58 144 177 265 3.65e-15 72.4
MS.gene35009.t1 MTR_1g063920 36.667 120 67 3 37 154 477 589 1.20e-15 73.6
MS.gene35009.t1 MTR_3g096410 44.231 104 49 4 57 154 56 156 1.52e-15 73.2
MS.gene35009.t1 MTR_8g014360 41.121 107 58 3 51 154 897 1001 2.39e-15 72.8
MS.gene35009.t1 MTR_8g014360 41.573 89 50 1 58 144 177 265 7.16e-15 71.6
MS.gene35009.t1 MTR_5g070320 41.758 91 51 1 56 144 166 256 2.92e-15 72.4
MS.gene35009.t1 MTR_5g070320 38.095 105 61 3 59 161 858 960 3.55e-13 66.6
MS.gene35009.t1 MTR_4g123850 42.045 88 49 1 59 144 168 255 3.15e-15 72.4
MS.gene35009.t1 MTR_4g123850 40.566 106 60 2 53 156 852 956 9.01e-13 65.5
MS.gene35009.t1 MTR_7g098800 41.573 89 50 1 58 144 132 220 4.84e-15 72.0
MS.gene35009.t1 MTR_7g098800 33.099 142 80 4 28 155 760 900 4.06e-14 69.3
MS.gene35009.t1 MTR_4g058000 34.167 120 70 3 37 154 491 603 5.65e-15 71.6
MS.gene35009.t1 MTR_2g102670 33.544 158 87 5 12 155 782 935 1.50e-14 70.5
MS.gene35009.t1 MTR_2g102670 34.831 89 56 1 58 144 166 254 2.24e-12 64.3
MS.gene35009.t1 MTR_2g102640 35.000 140 76 4 30 155 817 955 1.57e-14 70.5
MS.gene35009.t1 MTR_2g102640 37.079 89 54 1 58 144 166 254 2.46e-13 67.0
MS.gene35009.t1 MTR_4g094080 64.286 56 14 1 41 96 4 53 1.89e-14 69.3
MS.gene35009.t1 MTR_3g463680 39.823 113 64 3 51 161 835 945 3.53e-14 69.3
MS.gene35009.t1 MTR_8g093840 41.758 91 48 2 57 145 54 141 3.57e-14 69.3
MS.gene35009.t1 MTR_4g076940 58.491 53 22 0 101 153 2 54 3.96e-14 69.3
MS.gene35009.t1 MTR_2g102660 40.404 99 56 2 59 155 855 952 9.05e-14 68.2
MS.gene35009.t1 MTR_2g102660 35.955 89 55 1 58 144 166 254 8.26e-13 65.5
MS.gene35009.t1 MTR_4g011620 31.210 157 92 4 13 155 799 953 1.29e-13 67.8
MS.gene35009.t1 MTR_4g011620 35.955 89 55 1 58 144 160 248 1.26e-12 65.1
MS.gene35009.t1 MTR_5g070320 38.095 105 61 3 59 161 667 769 1.69e-13 67.4
MS.gene35009.t1 MTR_5g070320 38.095 105 61 3 59 161 571 673 2.11e-13 67.4
MS.gene35009.t1 MTR_7g098370 37.079 89 54 1 58 144 161 249 4.68e-13 66.2
MS.gene35009.t1 MTR_7g098370 39.394 99 57 2 59 155 841 938 3.49e-12 63.5
MS.gene35009.t1 MTR_7g098760 31.210 157 91 4 14 155 823 977 6.20e-13 65.9
MS.gene35009.t1 MTR_7g098760 37.079 89 54 1 58 144 161 249 1.10e-12 65.1
MS.gene35009.t1 MTR_7g098300 38.202 89 53 1 58 144 161 249 6.57e-13 65.9
MS.gene35009.t1 MTR_7g098300 31.410 156 91 4 14 155 823 976 3.92e-12 63.5
MS.gene35009.t1 MTR_4g011630 43.434 99 52 3 59 154 866 963 6.89e-13 65.9
MS.gene35009.t1 MTR_4g011630 35.955 89 55 1 58 144 172 260 2.02e-12 64.3
MS.gene35009.t1 MTR_7g098320 38.202 89 53 1 58 144 157 245 7.02e-13 65.9
MS.gene35009.t1 MTR_7g098320 31.410 156 91 5 14 155 819 972 1.74e-11 61.6
MS.gene35009.t1 MTR_7g098750 37.079 89 54 1 58 144 161 249 1.03e-12 65.1
MS.gene35009.t1 MTR_7g098750 38.393 112 63 4 51 159 875 983 1.07e-11 62.4
MS.gene35009.t1 MTR_1g011640 31.788 151 87 5 19 155 803 951 1.20e-12 65.1
MS.gene35009.t1 MTR_7g098750 37.079 89 54 1 58 144 161 249 1.23e-12 65.1
MS.gene35009.t1 MTR_7g098750 36.449 107 65 2 51 155 875 980 1.24e-11 62.0
MS.gene35009.t1 MTR_1g011650 37.963 108 62 3 51 155 869 974 1.26e-12 65.1
MS.gene35009.t1 MTR_4g011640 32.727 110 65 2 58 158 170 279 1.27e-12 65.1
MS.gene35009.t1 MTR_4g011640 39.394 99 57 2 59 155 863 960 1.35e-12 65.1
MS.gene35009.t1 MTR_7g098320 38.202 89 53 1 58 144 157 245 1.27e-12 65.1
MS.gene35009.t1 MTR_7g098320 31.410 156 91 5 14 155 819 972 4.08e-11 60.5
MS.gene35009.t1 MTR_3g107870 38.202 89 53 1 58 144 165 253 1.30e-12 65.1
MS.gene35009.t1 MTR_3g107870 37.615 109 65 2 49 155 880 987 2.12e-12 64.3
MS.gene35009.t1 MTR_7g104130 36.697 109 66 2 49 155 873 980 1.68e-12 64.7
MS.gene35009.t1 MTR_7g104130 38.372 86 51 1 59 142 184 269 4.96e-12 63.2
MS.gene35009.t1 MTR_7g104130 36.697 109 66 2 49 155 873 980 1.68e-12 64.7
MS.gene35009.t1 MTR_7g104130 38.372 86 51 1 59 142 184 269 4.99e-12 63.2
MS.gene35009.t1 MTR_7g104110 37.273 110 64 3 49 155 865 972 1.78e-12 64.7
MS.gene35009.t1 MTR_7g104110 38.372 86 51 1 59 142 178 263 4.40e-12 63.5
MS.gene35009.t1 MTR_7g098740 35.955 89 55 1 58 144 161 249 2.56e-12 63.9
MS.gene35009.t1 MTR_7g098740 41.346 104 55 4 59 159 841 941 4.07e-12 63.5
MS.gene35009.t1 MTR_7g104150 36.364 110 65 3 49 155 873 980 2.60e-12 63.9
MS.gene35009.t1 MTR_7g104150 38.824 85 50 1 59 141 184 268 2.89e-11 61.2
MS.gene35009.t1 MTR_7g104100 35.780 109 67 2 49 155 871 978 4.66e-12 63.5
MS.gene35009.t1 MTR_7g098750 38.393 112 63 4 51 159 605 713 1.06e-11 62.4
MS.gene35009.t1 MTR_4g116540 33.333 108 68 2 58 161 74 181 4.54e-11 60.5
MS.gene35009.t1 MTR_1g099570 41.489 94 49 2 59 149 50 140 7.70e-11 59.7
MS.gene35009.t1 MTR_1g492950 36.364 99 60 2 59 155 894 991 9.30e-11 59.7
MS.gene35009.t1 MTR_1g050525 36.047 86 53 1 59 142 176 261 9.67e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35009.t1 AT1G17840 57.143 119 48 1 37 155 50 165 2.03e-40 144
MS.gene35009.t1 AT3G21090 50.000 146 62 4 12 153 1 139 7.23e-37 134
MS.gene35009.t1 AT1G51500 50.413 121 58 1 33 153 20 138 1.05e-34 128
MS.gene35009.t1 AT1G51460 50.820 122 58 1 32 153 5 124 1.27e-33 125
MS.gene35009.t1 AT2G28070 45.133 113 59 1 34 146 111 220 3.93e-26 103
MS.gene35009.t1 AT2G28070 45.133 113 59 1 34 146 111 220 3.93e-26 103
MS.gene35009.t1 AT2G01320 36.301 146 89 2 11 154 44 187 8.03e-23 94.0
MS.gene35009.t1 AT2G01320 36.301 146 89 2 11 154 44 187 8.03e-23 94.0
MS.gene35009.t1 AT2G01320 35.811 148 91 2 11 156 44 189 1.06e-22 94.0
MS.gene35009.t1 AT2G01320 35.811 148 91 2 11 156 44 189 1.06e-22 94.0
MS.gene35009.t1 AT2G01320 35.811 148 91 2 11 156 44 189 1.11e-22 94.0
MS.gene35009.t1 AT2G01320 35.811 148 91 2 11 156 44 189 1.12e-22 94.0
MS.gene35009.t1 AT2G01320 36.301 146 89 2 11 154 44 187 1.22e-22 93.6
MS.gene35009.t1 AT2G01320 36.301 146 89 2 11 154 44 187 1.22e-22 93.6
MS.gene35009.t1 AT5G06530 38.514 148 84 4 15 157 132 277 1.31e-21 90.9
MS.gene35009.t1 AT5G06530 38.514 148 84 4 15 157 132 277 1.31e-21 90.9
MS.gene35009.t1 AT5G06530 38.514 148 84 4 15 157 132 277 1.36e-21 90.9
MS.gene35009.t1 AT5G13580 34.568 162 84 5 1 154 57 204 3.56e-21 89.7
MS.gene35009.t1 AT4G27420 44.762 105 56 2 55 157 62 166 6.51e-21 88.6
MS.gene35009.t1 AT3G55100 42.308 104 57 2 57 158 49 151 4.11e-20 86.7
MS.gene35009.t1 AT3G55100 42.308 104 57 2 57 158 49 151 4.11e-20 86.7
MS.gene35009.t1 AT1G71960 45.794 107 50 4 52 154 76 178 4.27e-20 86.3
MS.gene35009.t1 AT3G13220 44.643 112 49 4 57 161 104 209 4.46e-20 86.3
MS.gene35009.t1 AT2G37360 42.157 102 56 2 56 155 130 230 8.17e-20 85.5
MS.gene35009.t1 AT3G53510 44.330 97 51 2 56 150 123 218 1.65e-19 84.7
MS.gene35009.t1 AT3G55110 40.708 113 63 2 49 158 81 192 2.27e-19 84.3
MS.gene35009.t1 AT1G31770 40.566 106 60 2 54 158 76 179 3.13e-19 84.0
MS.gene35009.t1 AT3G55130 40.000 110 62 2 52 158 92 200 1.33e-18 82.0
MS.gene35009.t1 AT3G25620 36.765 136 74 4 33 158 64 197 4.98e-18 80.5
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.92e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 791 918 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.92e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 791 918 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.92e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 791 918 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.92e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 791 918 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.98e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 798 925 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.98e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 798 925 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.98e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 798 925 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.98e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 798 925 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 128 259 5.98e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 798 925 1.88e-12 64.7
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 131 262 6.33e-18 80.5
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 794 921 1.99e-12 64.3
MS.gene35009.t1 AT4G15215 34.091 132 73 3 42 159 131 262 6.46e-18 80.1
MS.gene35009.t1 AT4G15215 35.821 134 73 5 33 159 801 928 2.05e-12 64.3
MS.gene35009.t1 AT3G55090 32.051 156 86 5 4 155 65 204 7.96e-18 80.1
MS.gene35009.t1 AT1G53390 40.833 120 62 5 37 154 507 619 8.13e-18 80.1
MS.gene35009.t1 AT3G25620 36.765 136 74 4 33 158 64 197 8.23e-18 79.7
MS.gene35009.t1 AT3G53480 39.516 124 65 4 46 159 175 298 1.24e-17 79.3
MS.gene35009.t1 AT3G53480 40.741 108 61 2 51 156 869 975 1.22e-12 65.1
MS.gene35009.t1 AT2G13610 46.809 94 45 2 54 145 57 147 5.16e-17 77.4
MS.gene35009.t1 AT2G39350 36.893 103 62 2 55 155 105 206 7.31e-17 77.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 71 202 8.31e-17 77.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 71 202 8.31e-17 77.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 133 264 1.21e-16 76.6
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 768 897 2.89e-13 67.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 71 202 1.23e-16 76.6
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 724 853 2.93e-13 67.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 71 202 1.23e-16 76.6
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 724 853 2.93e-13 67.0
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 133 264 1.36e-16 76.6
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 786 915 3.33e-13 66.6
MS.gene35009.t1 AT4G15233 33.333 132 74 4 42 159 133 264 1.36e-16 76.6
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 786 915 3.27e-13 66.6
MS.gene35009.t1 AT2G37010 40.000 120 63 4 37 154 484 596 1.66e-16 76.3
MS.gene35009.t1 AT2G37010 40.000 120 63 4 37 154 484 596 1.66e-16 76.3
MS.gene35009.t1 AT2G37280 34.058 138 84 4 14 144 104 241 2.40e-16 75.9
MS.gene35009.t1 AT2G37280 37.984 129 72 4 33 154 809 936 4.26e-12 63.5
MS.gene35009.t1 AT2G37280 34.058 138 84 4 14 144 104 241 3.13e-16 75.5
MS.gene35009.t1 AT2G37280 37.984 129 72 4 33 154 809 936 5.34e-12 63.2
MS.gene35009.t1 AT2G29940 35.000 140 76 3 31 156 813 951 7.71e-16 74.3
MS.gene35009.t1 AT2G29940 42.222 90 48 2 58 144 174 262 9.15e-15 71.2
MS.gene35009.t1 AT4G15236 31.818 132 76 3 42 159 131 262 8.15e-16 74.3
MS.gene35009.t1 AT4G15236 36.364 143 81 4 16 154 777 913 2.52e-13 67.0
MS.gene35009.t1 AT4G15230 32.727 110 65 2 59 159 156 265 1.80e-15 73.2
MS.gene35009.t1 AT4G15230 35.821 134 73 5 33 159 804 931 7.01e-12 62.8
MS.gene35009.t1 AT4G15230 32.727 110 65 2 59 159 156 265 1.80e-15 73.2
MS.gene35009.t1 AT4G15230 35.821 134 73 5 33 159 804 931 7.01e-12 62.8
MS.gene35009.t1 AT4G15230 32.727 110 65 2 59 159 156 265 1.82e-15 73.2
MS.gene35009.t1 AT4G15230 35.821 134 73 5 33 159 804 931 6.40e-12 63.2
MS.gene35009.t1 AT4G15230 32.727 110 65 2 59 159 77 186 2.17e-15 73.2
MS.gene35009.t1 AT4G15230 35.821 134 73 5 33 159 725 852 9.31e-12 62.4
MS.gene35009.t1 AT3G16340 39.815 108 62 2 51 156 833 939 7.05e-15 71.6
MS.gene35009.t1 AT3G16340 35.955 89 55 1 58 144 161 249 9.71e-13 65.5
MS.gene35009.t1 AT3G16340 39.815 108 62 2 51 156 828 934 7.12e-15 71.6
MS.gene35009.t1 AT3G16340 35.955 89 55 1 58 144 161 249 9.70e-13 65.5
MS.gene35009.t1 AT3G30842 41.221 131 61 5 44 159 826 955 7.12e-15 71.6
MS.gene35009.t1 AT3G30842 40.449 89 51 1 58 144 160 248 2.37e-14 70.1
MS.gene35009.t1 AT1G59870 41.573 89 50 1 58 144 185 273 8.33e-15 71.2
MS.gene35009.t1 AT1G59870 39.623 106 61 2 51 154 886 990 1.03e-13 68.2
MS.gene35009.t1 AT5G60740 35.000 120 69 4 37 154 499 611 8.71e-15 71.2
MS.gene35009.t1 AT4G25750 46.316 95 44 3 59 150 30 120 2.24e-14 70.1
MS.gene35009.t1 AT5G06530 48.193 83 39 3 76 156 1 81 3.67e-14 69.3
MS.gene35009.t1 AT1G53270 32.680 153 91 3 20 161 2 153 3.71e-14 69.3
MS.gene35009.t1 AT1G15520 37.079 89 54 1 58 144 168 256 6.71e-14 68.6
MS.gene35009.t1 AT1G15520 33.333 162 81 6 13 155 796 949 8.45e-14 68.6
MS.gene35009.t1 AT5G19410 35.294 102 62 1 59 156 66 167 1.19e-13 67.8
MS.gene35009.t1 AT5G19410 35.294 102 62 1 59 156 75 176 1.24e-13 67.8
MS.gene35009.t1 AT1G15520 37.079 89 54 1 58 144 168 256 1.31e-13 67.8
MS.gene35009.t1 AT1G15520 33.333 162 81 6 13 155 796 949 2.11e-13 67.4
MS.gene35009.t1 AT4G15233 36.567 134 79 3 23 154 777 906 3.37e-13 66.6
MS.gene35009.t1 AT4G15233 32.576 132 66 5 42 159 133 255 2.71e-12 63.9
MS.gene35009.t1 AT2G26910 39.394 99 57 2 59 155 845 942 4.09e-13 66.6
MS.gene35009.t1 AT1G15210 38.202 89 53 1 58 144 183 271 8.91e-13 65.5
MS.gene35009.t1 AT1G15210 39.796 98 56 2 59 154 867 963 4.22e-12 63.5
MS.gene35009.t1 AT2G37280 37.984 129 72 4 33 154 651 778 3.62e-12 63.5
MS.gene35009.t1 AT2G37280 39.474 76 44 1 71 144 8 83 1.19e-11 62.4
MS.gene35009.t1 AT2G37280 37.984 129 72 4 33 154 838 965 3.66e-12 63.5
MS.gene35009.t1 AT5G52860 42.391 92 46 3 59 147 44 131 1.10e-11 62.4
MS.gene35009.t1 AT1G66950 32.710 107 63 2 59 156 190 296 4.61e-11 60.5

Find 35 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTAACTTGGAAAGATTTA+TGG 0.118017 4.4:+20952716 MS.gene35009:CDS
CTTTCAATCTCTAGGATATT+AGG 0.283672 4.4:-20952634 None:intergenic
TGAAAGCAAATCAATTCTTC+AGG 0.309362 4.4:+20952771 MS.gene35009:CDS
CTTAACTTGGAAAGATTTAT+GGG 0.314150 4.4:+20952717 MS.gene35009:CDS
TTGGCTATAATGGGTCCTTC+TGG 0.326290 4.4:+20952826 MS.gene35009:CDS
AAGAATTGATTTGCTTTCAT+TGG 0.326703 4.4:-20952767 None:intergenic
TGCAAAGCCAGGTCAGCTTT+TGG 0.346322 4.4:+20952807 MS.gene35009:CDS
CACGGCTTCTTTAACGGTTA+AGG 0.348299 4.4:-20953917 None:intergenic
AGAAGGGAGTTTGCTTAACT+TGG 0.354423 4.4:+20952704 MS.gene35009:CDS
AACAAACAAGCATTGGCTTA+TGG 0.366572 4.4:+20953679 MS.gene35009:CDS
GGTTCAAACACAAGACAATC+AGG 0.375821 4.4:+20953637 MS.gene35009:CDS
ATAGTACACGGCTTCTTTAA+CGG 0.384633 4.4:-20953923 None:intergenic
ATATGTATTTCAGGGAGATT+AGG 0.390555 4.4:+20953616 MS.gene35009:intron
GTGACTGTTTCTGCTTCAAC+AGG 0.427001 4.4:+20952739 MS.gene35009:CDS
TTGTGTCAGGTAATTGAAGT+TGG 0.471985 4.4:-20953951 None:intergenic
TCTTCATTAGACATTGTGTC+AGG 0.473825 4.4:-20953964 None:intergenic
TCAATTCTTCAGGGTCTGAC+TGG 0.475591 4.4:+20952781 MS.gene35009:CDS
ATAATGGGTCCTTCTGGTTG+TGG 0.481002 4.4:+20952832 MS.gene35009:CDS
GATGAATGGAGGAGAAGAGA+AGG 0.482193 4.4:+20952687 MS.gene35009:CDS
ACACTTCTTGATGCTTTAGC+AGG 0.497837 4.4:+20952862 MS.gene35009:CDS
GAAAGCAAATCAATTCTTCA+GGG 0.502763 4.4:+20952772 MS.gene35009:CDS
TATTAGGCACAGATGAAAGA+AGG 0.506902 4.4:-20952618 None:intergenic
CTCTTGCGCTTTCAATCTCT+AGG 0.511830 4.4:-20952642 None:intergenic
ATGAATGGAGGAGAAGAGAA+GGG 0.524895 4.4:+20952688 MS.gene35009:CDS
CAATGGCAACAAACAAGCAT+TGG 0.531389 4.4:+20953672 MS.gene35009:CDS
GATTGAAAGCGCAAGAGAAG+AGG 0.532796 4.4:+20952648 MS.gene35009:CDS
TGTGTCAGGTAATTGAAGTT+GGG 0.561591 4.4:-20953950 None:intergenic
CTGACTGGTTATGCAAAGCC+AGG 0.567099 4.4:+20952796 MS.gene35009:CDS
ATTATAGCCAAAAGCTGACC+TGG 0.570027 4.4:-20952814 None:intergenic
GAAAGCGCAAGAGAAGAGGT+AGG 0.592493 4.4:+20952652 MS.gene35009:CDS
GTTCAAACACAAGACAATCA+GGG 0.607925 4.4:+20953638 MS.gene35009:CDS
ATTAGGCACAGATGAAAGAA+GGG 0.612796 4.4:-20952617 None:intergenic
TTCAAACACAAGACAATCAG+GGG 0.633055 4.4:+20953639 MS.gene35009:CDS
AGCATTGGCTTATGGAACCT+CGG 0.634970 4.4:+20953687 MS.gene35009:CDS
AAGTTGGGCTGAATAGTACA+CGG 0.665709 4.4:-20953935 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATATAATATTTTAAT+TGG - chr4.4:20953594-20953613 None:intergenic 0.0%
!! GATATTTATATACAAATTAT+TGG + chr4.4:20953451-20953470 MS.gene35009:intron 10.0%
!! TATAATATTAATTGTAAGAA+TGG - chr4.4:20953851-20953870 None:intergenic 10.0%
!!! ATTATTTTTATATGTATTTC+AGG + chr4.4:20953607-20953626 MS.gene35009:intron 10.0%
!!! TTATTTTTATATGTATTTCA+GGG + chr4.4:20953608-20953627 MS.gene35009:intron 10.0%
!! CATATCAATTGAATAATTTA+TGG - chr4.4:20953775-20953794 None:intergenic 15.0%
!!! TACAAATTGTTTTTTATTGA+AGG - chr4.4:20953732-20953751 None:intergenic 15.0%
!! ATATTGTTGAAATAGTATGT+TGG - chr4.4:20952962-20952981 None:intergenic 20.0%
!! ATTAATTGTAAGAATGGTTA+AGG - chr4.4:20953845-20953864 None:intergenic 20.0%
!! TAATATTATAATGTGATCAC+AGG + chr4.4:20953861-20953880 MS.gene35009:intron 20.0%
!! TTATATACAAATTATTGGGT+GGG + chr4.4:20953456-20953475 MS.gene35009:intron 20.0%
!! TTTATATACAAATTATTGGG+TGG + chr4.4:20953455-20953474 MS.gene35009:intron 20.0%
!!! ATGAACTTTAAAACATAGTA+AGG - chr4.4:20953096-20953115 None:intergenic 20.0%
!!! ATTTTGTATATTGTTTCTCA+AGG + chr4.4:20952994-20953013 MS.gene35009:intron 20.0%
!!! TTACTATGTTTTAAAGTTCA+TGG + chr4.4:20953095-20953114 MS.gene35009:intron 20.0%
!!! TTTAGATTTTATATATACCG+AGG - chr4.4:20953707-20953726 None:intergenic 20.0%
! AAAAACAAGTTAAAACCACA+TGG - chr4.4:20953321-20953340 None:intergenic 25.0%
! GAAAAACATGTGTTTATCAA+AGG - chr4.4:20953179-20953198 None:intergenic 25.0%
! TGACAAAATTCAAATCTCTT+CGG + chr4.4:20953257-20953276 MS.gene35009:intron 25.0%
!! AAAGTCAAACTTTTACCAAT+GGG - chr4.4:20953226-20953245 None:intergenic 25.0%
!! CTTAACTTGGAAAGATTTAT+GGG + chr4.4:20952717-20952736 MS.gene35009:CDS 25.0%
!! TAAAGTCAAACTTTTACCAA+TGG - chr4.4:20953227-20953246 None:intergenic 25.0%
!! TGTGTTTTCAATTCTTAAAC+AGG + chr4.4:20953351-20953370 MS.gene35009:intron 25.0%
!!! AAGAATTGATTTGCTTTCAT+TGG - chr4.4:20952770-20952789 None:intergenic 25.0%
!!! ATGGCTTCTATTTCATTTTT+TGG + chr4.4:20953121-20953140 MS.gene35009:intron 25.0%
!!! TGTGGTTTTAACTTGTTTTT+AGG + chr4.4:20953321-20953340 MS.gene35009:intron 25.0%
!!! TGTTTTTCTGAAGAATTTGT+CGG + chr4.4:20953191-20953210 MS.gene35009:intron 25.0%
AAGTTAGTTATTTGCATGCA+TGG - chr4.4:20952904-20952923 None:intergenic 30.0%
AGGAAGTTATATATAGCAGT+TGG - chr4.4:20952927-20952946 None:intergenic 30.0%
ATATGTATTTCAGGGAGATT+AGG + chr4.4:20953616-20953635 MS.gene35009:intron 30.0%
GAAAGCAAATCAATTCTTCA+GGG + chr4.4:20952772-20952791 MS.gene35009:CDS 30.0%
TCTTCGGTCGTAAAATAAAT+AGG + chr4.4:20953273-20953292 MS.gene35009:intron 30.0%
TGAAAGCAAATCAATTCTTC+AGG + chr4.4:20952771-20952790 MS.gene35009:CDS 30.0%
! GCTTAACTTGGAAAGATTTA+TGG + chr4.4:20952716-20952735 MS.gene35009:CDS 30.0%
! GTTTTCAATTCTTAAACAGG+AGG + chr4.4:20953354-20953373 MS.gene35009:intron 30.0%
!! CTTTCAATCTCTAGGATATT+AGG - chr4.4:20952637-20952656 None:intergenic 30.0%
!! GAAATAGTATGTTGGTGATT+TGG - chr4.4:20952954-20952973 None:intergenic 30.0%
!! TATGTTGGTGATTTGGATTT+AGG - chr4.4:20952947-20952966 None:intergenic 30.0%
ATAGTACACGGCTTCTTTAA+CGG - chr4.4:20953926-20953945 None:intergenic 35.0%
ATGAAACAAAGCACAATCTG+TGG + chr4.4:20953489-20953508 MS.gene35009:intron 35.0%
ATTAGGCACAGATGAAAGAA+GGG - chr4.4:20952620-20952639 None:intergenic 35.0%
GCATCAAAAAAGATGAATGG+AGG + chr4.4:20952676-20952695 MS.gene35009:CDS 35.0%
GTTCAAACACAAGACAATCA+GGG + chr4.4:20953638-20953657 MS.gene35009:CDS 35.0%
TATTAGGCACAGATGAAAGA+AGG - chr4.4:20952621-20952640 None:intergenic 35.0%
TCTTCATTAGACATTGTGTC+AGG - chr4.4:20953967-20953986 None:intergenic 35.0%
TGTGTCAGGTAATTGAAGTT+GGG - chr4.4:20953953-20953972 None:intergenic 35.0%
TTCAAACACAAGACAATCAG+GGG + chr4.4:20953639-20953658 MS.gene35009:CDS 35.0%
TTGTGTCAGGTAATTGAAGT+TGG - chr4.4:20953954-20953973 None:intergenic 35.0%
! ATCGTGACTTTATTTCCATG+TGG + chr4.4:20953303-20953322 MS.gene35009:intron 35.0%
! GGAGCATCAAAAAAGATGAA+TGG + chr4.4:20952673-20952692 MS.gene35009:CDS 35.0%
!! AACAAACAAGCATTGGCTTA+TGG + chr4.4:20953679-20953698 MS.gene35009:CDS 35.0%
!!! GTTTTAAAGTTCATGGCTGA+TGG + chr4.4:20953102-20953121 MS.gene35009:intron 35.0%
!!! TCAGGGGATATTTTGATCAA+TGG + chr4.4:20953655-20953674 MS.gene35009:CDS 35.0%
AAGTTGGGCTGAATAGTACA+CGG - chr4.4:20953938-20953957 None:intergenic 40.0%
ACACTTCTTGATGCTTTAGC+AGG + chr4.4:20952862-20952881 MS.gene35009:CDS 40.0%
ATGAATGGAGGAGAAGAGAA+GGG + chr4.4:20952688-20952707 MS.gene35009:CDS 40.0%
ATTATAGCCAAAAGCTGACC+TGG - chr4.4:20952817-20952836 None:intergenic 40.0%
CAATGGCAACAAACAAGCAT+TGG + chr4.4:20953672-20953691 MS.gene35009:CDS 40.0%
GGTTCAAACACAAGACAATC+AGG + chr4.4:20953637-20953656 MS.gene35009:CDS 40.0%
GGTTCAAAGACTACATGCAT+TGG - chr4.4:20953573-20953592 None:intergenic 40.0%
TGTCGGAGATATTAACCCAT+TGG + chr4.4:20953208-20953227 MS.gene35009:intron 40.0%
! AGAAGGGAGTTTGCTTAACT+TGG + chr4.4:20952704-20952723 MS.gene35009:CDS 40.0%
! GTAGATTTTCCACAACCAGA+AGG - chr4.4:20952844-20952863 None:intergenic 40.0%
!! AGGTCAGCTTTTGGCTATAA+TGG + chr4.4:20952816-20952835 MS.gene35009:CDS 40.0%
!! GGTCAGCTTTTGGCTATAAT+GGG + chr4.4:20952817-20952836 MS.gene35009:CDS 40.0%
CACGGCTTCTTTAACGGTTA+AGG - chr4.4:20953920-20953939 None:intergenic 45.0%
CTCTTGCGCTTTCAATCTCT+AGG - chr4.4:20952645-20952664 None:intergenic 45.0%
GATGAATGGAGGAGAAGAGA+AGG + chr4.4:20952687-20952706 MS.gene35009:CDS 45.0%
TCAATTCTTCAGGGTCTGAC+TGG + chr4.4:20952781-20952800 MS.gene35009:CDS 45.0%
! GATTGAAAGCGCAAGAGAAG+AGG + chr4.4:20952648-20952667 MS.gene35009:CDS 45.0%
!! AGCATTGGCTTATGGAACCT+CGG + chr4.4:20953687-20953706 MS.gene35009:CDS 45.0%
!! ATAATGGGTCCTTCTGGTTG+TGG + chr4.4:20952832-20952851 MS.gene35009:CDS 45.0%
!! GTGACTGTTTCTGCTTCAAC+AGG + chr4.4:20952739-20952758 MS.gene35009:CDS 45.0%
!! TTGGCTATAATGGGTCCTTC+TGG + chr4.4:20952826-20952845 MS.gene35009:CDS 45.0%
!! ATATTTATATACAAATTATT+GGG + chr4.4:20953452-20953471 MS.gene35009:intron 5.0%
AAAGCACAATCTGTGGCAGC+GGG + chr4.4:20953496-20953515 MS.gene35009:intron 50.0%
CAAAGCACAATCTGTGGCAG+CGG + chr4.4:20953495-20953514 MS.gene35009:intron 50.0%
! CTGACTGGTTATGCAAAGCC+AGG + chr4.4:20952796-20952815 MS.gene35009:CDS 50.0%
! GAAAGCGCAAGAGAAGAGGT+AGG + chr4.4:20952652-20952671 MS.gene35009:CDS 50.0%
! TGCAAAGCCAGGTCAGCTTT+TGG + chr4.4:20952807-20952826 MS.gene35009:CDS 50.0%
AAGCACAATCTGTGGCAGCG+GGG + chr4.4:20953497-20953516 MS.gene35009:intron 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 20952610 20954014 20952610 ID=MS.gene35009
chr4.4 mRNA 20952610 20954014 20952610 ID=MS.gene35009.t1;Parent=MS.gene35009
chr4.4 exon 20952610 20952883 20952610 ID=MS.gene35009.t1.exon1;Parent=MS.gene35009.t1
chr4.4 CDS 20952610 20952883 20952610 ID=cds.MS.gene35009.t1;Parent=MS.gene35009.t1
chr4.4 exon 20953629 20953708 20953629 ID=MS.gene35009.t1.exon2;Parent=MS.gene35009.t1
chr4.4 CDS 20953629 20953708 20953629 ID=cds.MS.gene35009.t1;Parent=MS.gene35009.t1
chr4.4 exon 20953883 20954014 20953883 ID=MS.gene35009.t1.exon3;Parent=MS.gene35009.t1
chr4.4 CDS 20953883 20954014 20953883 ID=cds.MS.gene35009.t1;Parent=MS.gene35009.t1
Gene Sequence

>MS.gene35009

ATGGCTTCCCTTCTTTCATCTGTGCCTAATATCCTAGAGATTGAAAGCGCAAGAGAAGAGGTAGGAGCATCAAAAAAGATGAATGGAGGAGAAGAGAAGGGAGTTTGCTTAACTTGGAAAGATTTATGGGTGACTGTTTCTGCTTCAACAGGAAAAACCAATGAAAGCAAATCAATTCTTCAGGGTCTGACTGGTTATGCAAAGCCAGGTCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGTACTACATGATCTTGACCATGCATGCAAATAACTAACTTCCAACTGCTATATATAACTTCCTAAATCCAAATCACCAACATACTATTTCAACAATATGTAACATGTCTAATTTTGTATATTGTTTCTCAAGGTTAACTCATTTAAACGAATTAATATATTTGCTTAATTAATAACTTCAAATGAAAAATACTTCATTTTAAATTAAAACCTTACTATGTTTTAAAGTTCATGGCTGATGGCTTCTATTTCATTTTTTGGATGATATTTGATTGTCTACATATAATCTTTTTCCTTTGATAAACACATGTTTTTCTGAAGAATTTGTCGGAGATATTAACCCATTGGTAAAAGTTTGACTTTATAATCTTAAATGACAAAATTCAAATCTCTTCGGTCGTAAAATAAATAGGCATTAGTATCGTGACTTTATTTCCATGTGGTTTTAACTTGTTTTTAGGATGAAGATGTGTTTTCAATTCTTAAACAGGAGGCGTGTCATCTTGACATACGCGTTATTTCATCTTACTGAAAAAATTCTATGTACACACATTAAATAATAAGTTTAGATATTTATATACAAATTATTGGGTGGGAACTCTGAGAATGAAACAAAGCACAATCTGTGGCAGCGGGGTTTTTCTTTTATAATAGTGTTCAATTCTTTAAATTAAAGTTTATTAAGTTCCAATGCATGTAGTCTTTGAACCAATTAAAATATTATATTATTTTTATATGTATTTCAGGGAGATTAGGTTCAAACACAAGACAATCAGGGGATATTTTGATCAATGGCAACAAACAAGCATTGGCTTATGGAACCTCGGTATATATAAAATCTAAAATCCTTCAATAAAAAACAATTTGTAAAGTATACTACTCATTTAGTCCATAAATTATTCAATTGATATGTATATTTAATCACAACACAAACATATGTCACACTTTACGATAATAAACCTTAACCATTCTTACAATTAATATTATAATGTGATCACAGGCATATGTCACACAAGATGATACTTTATTAACAACCTTAACCGTTAAAGAAGCCGTGTACTATTCAGCCCAACTTCAATTACCTGACACAATGTCTAATGAAGAGAAAAAGAAAGAGCTGATTTTACAATAA
Protein sequence

>MS.gene35009.t1

MASLLSSVPNILEIESAREEVGASKKMNGGEEKGVCLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSNEEKKKELILQ