AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056311


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056311.t1 MTR_7g016820 99.229 389 3 0 1 389 1 389 0.0 800
MS.gene056311.t1 MTR_7g016720 99.229 389 3 0 1 389 1 389 0.0 798
MS.gene056311.t1 MTR_7g016780 98.715 389 5 0 1 389 1 389 0.0 796
MS.gene056311.t1 MTR_7g016700 98.201 389 7 0 1 389 1 389 0.0 796
MS.gene056311.t1 MTR_7g016800 98.458 389 6 0 1 389 1 389 0.0 795
MS.gene056311.t1 MTR_1g098140 98.201 389 7 0 1 389 1 389 0.0 792
MS.gene056311.t1 MTR_5g007730 97.943 389 8 0 1 389 1 389 0.0 791
MS.gene056311.t1 MTR_1g097935 97.943 389 8 0 1 389 1 389 0.0 790
MS.gene056311.t1 MTR_1g097910 97.686 389 9 0 1 389 1 389 0.0 789
MS.gene056311.t1 MTR_5g007760 96.401 389 14 0 1 389 1 389 0.0 781
MS.gene056311.t1 MTR_5g007717 95.630 389 17 0 1 389 1 389 0.0 776
MS.gene056311.t1 MTR_5g007713 95.630 389 17 0 1 389 1 389 0.0 776
MS.gene056311.t1 MTR_3g083920 90.464 388 37 0 1 388 1 388 0.0 746
MS.gene056311.t1 MTR_3g083910 89.691 388 40 0 1 388 1 388 0.0 744
MS.gene056311.t1 MTR_2g058470 87.404 389 49 0 1 389 1 389 0.0 718
MS.gene056311.t1 MTR_7g084300 80.977 389 74 0 1 389 1 389 0.0 676
MS.gene056311.t1 MTR_3g086260 81.443 388 72 0 1 388 1 388 0.0 675
MS.gene056311.t1 MTR_7g113405 96.040 303 12 0 87 389 1 303 0.0 597
MS.gene056311.t1 MTR_3g088675 66.838 389 129 0 1 389 1 389 0.0 581
MS.gene056311.t1 MTR_5g007740 80.368 326 64 0 64 389 1 326 0.0 547
MS.gene056311.t1 MTR_5g007723 68.514 397 76 5 12 389 32 398 0.0 531
MS.gene056311.t1 MTR_5g007770 77.333 300 35 2 70 369 1 267 4.92e-166 466
MS.gene056311.t1 MTR_3g088670 48.718 390 186 6 10 388 2 388 5.58e-129 376
MS.gene056311.t1 MTR_4g075560 43.158 380 209 4 11 387 13 388 3.85e-104 313
MS.gene056311.t1 MTR_4g078730 37.534 373 226 2 15 387 24 389 4.58e-92 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056311.t1 AT5G13930 82.732 388 66 1 3 389 8 395 0.0 677
MS.gene056311.t1 AT4G00040 40.051 392 223 6 1 387 1 385 7.36e-97 294
MS.gene056311.t1 AT4G34850 40.849 377 219 3 15 389 18 392 1.20e-96 294
MS.gene056311.t1 AT1G02050 39.332 389 225 6 2 387 12 392 4.28e-88 272
MS.gene056311.t1 AT4G34850 40.312 320 188 2 72 389 1 319 3.29e-81 252
MS.gene056311.t1 AT3G52160 26.860 242 159 9 150 387 97 324 7.99e-12 66.2
MS.gene056311.t1 AT3G52160 26.860 242 159 9 150 387 210 437 1.87e-11 65.9

Find 90 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAATGGGGTGTATTATT+TGG 0.169989 7.3:-81796156 MS.gene056311:CDS
CTGATTACAATTCAATCTTT+TGG 0.254027 7.3:-81796371 MS.gene056311:CDS
AGAGAAGTGCTTAGTGAATA+TGG 0.285983 7.3:-81796267 MS.gene056311:CDS
TGGGGTGTATTATTTGGTTT+TGG 0.289261 7.3:-81796150 MS.gene056311:CDS
AACCTATATTTGAGATGGTT+TGG 0.308691 7.3:-81796548 MS.gene056311:CDS
CTTGTTGGACAAGCACTATT+TGG 0.314421 7.3:-81796624 MS.gene056311:CDS
TATCAACTCACCAAACTCTT+AGG 0.335572 7.3:-81796825 MS.gene056311:CDS
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 7.3:-81796739 MS.gene056311:CDS
TCTACTTGATCTAGAATTGC+AGG 0.346751 7.3:+81796330 None:intergenic
TGAATACATGGCACCTTCAT+TGG 0.347646 7.3:-81796997 MS.gene056311:CDS
CTTTGTTCAACACAATTTGC+TGG 0.349776 7.3:+81797583 None:intergenic
TCAATGGCTCCTTCACTATC+AGG 0.368167 7.3:+81796507 None:intergenic
AAGTGAGTAATCTTTGACTT+TGG 0.381814 7.3:+81796891 None:intergenic
CACCTTCTTAAAGATGTTCC+TGG 0.385004 7.3:-81796453 MS.gene056311:CDS
CCAATGGCCAAGATAGTTGC+AGG 0.393168 7.3:+81797616 None:intergenic
GAGTTTGGTGAGTTGATAAT+CGG 0.404976 7.3:+81796830 None:intergenic
AGGTGGCACGGTGCTTCGTT+TGG 0.407834 7.3:-81796751 MS.gene056311:CDS
GGAGCTGCTGCACTCATTGT+TGG 0.411529 7.3:-81796597 MS.gene056311:CDS
GGTTTCTCAATTTCTGAGAC+TGG 0.413103 7.3:+81796567 None:intergenic
AGAAGGCCCTGCAACTATCT+TGG 0.418429 7.3:-81797623 MS.gene056311:CDS
GCCATGTATTCACAAACATT+AGG 0.420204 7.3:+81797008 None:intergenic
CACCTGCAAAACACCCTTGT+TGG 0.425276 7.3:+81796769 None:intergenic
ACTCACTTGGACAGCCTTGT+TGG 0.426712 7.3:-81796639 MS.gene056311:CDS
GGTTGAGGCTTTCGAGCCAT+TGG 0.428986 7.3:-81796400 MS.gene056311:CDS
GTCCAAACCATCTCAAATAT+AGG 0.437103 7.3:+81796546 None:intergenic
TGGGCGAAGACCTAAGAGTT+TGG 0.450749 7.3:+81796815 None:intergenic
AAATAATTAAACATCTCATA+TGG 0.456479 7.3:+81796086 None:intergenic
AACGGGAGAAGGACTTGAAT+GGG 0.456668 7.3:-81796169 MS.gene056311:CDS
ACGCAAAACAACCGTTTCAA+TGG 0.461439 7.3:+81796116 None:intergenic
AGTGAAGGCTATAAAAGAAT+GGG 0.468743 7.3:-81796919 MS.gene056311:CDS
TTCACGAAGGTGACCATCAA+TGG 0.471758 7.3:+81796491 None:intergenic
GCAAGACATGGTGGTGGTAG+AGG 0.474656 7.3:-81796967 MS.gene056311:CDS
AAAGAACATTACTAAAGCAT+TGG 0.475145 7.3:-81796421 MS.gene056311:CDS
GTTGAGGCTTTCGAGCCATT+GGG 0.477937 7.3:-81796399 MS.gene056311:CDS
CTGTCCAAGTGAGTATCACT+AGG 0.483602 7.3:+81796648 None:intergenic
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 7.3:-81796452 MS.gene056311:CDS
CTGAAATTCGTAAAGCTCAA+AGG 0.484509 7.3:-81797648 MS.gene056311:CDS
GTCACTGCTGTCACATTTCG+TGG 0.484522 7.3:-81796672 MS.gene056311:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 7.3:-81796486 MS.gene056311:CDS
GATAGTGAAGGAGCCATTGA+TGG 0.488582 7.3:-81796504 MS.gene056311:CDS
TCCTAATGTTTGTGAATACA+TGG 0.493180 7.3:-81797009 MS.gene056311:CDS
CAGTGAAGGCTATAAAAGAA+TGG 0.502364 7.3:-81796920 MS.gene056311:CDS
GTCTTCGCCCATATGTGAAA+AGG 0.504788 7.3:-81796803 MS.gene056311:CDS
TGGCACCTTCATTGGATGCT+AGG 0.506096 7.3:-81796989 MS.gene056311:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 7.3:-81796553 MS.gene056311:CDS
TGCTGGATTTGCAGTACCAA+TGG 0.508433 7.3:+81797600 None:intergenic
ACCAGGACTTACCATTGAAA+CGG 0.510913 7.3:-81796127 MS.gene056311:CDS
TGAAATTCGTAAAGCTCAAA+GGG 0.513791 7.3:-81797647 MS.gene056311:CDS
GTGAGTTGATAATCGGCTCC+AGG 0.515720 7.3:+81796837 None:intergenic
AAAGACGGATTGAAAACAAC+GGG 0.516142 7.3:-81796186 MS.gene056311:CDS
CAACGGGAGAAGGACTTGAA+TGG 0.517384 7.3:-81796170 MS.gene056311:CDS
ACCGTTTCAATGGTAAGTCC+TGG 0.536054 7.3:+81796126 None:intergenic
AGGGAAGGAGGCTGCAGTGA+AGG 0.537534 7.3:-81796934 MS.gene056311:CDS
TCTAGAATTGCAGGTCCACC+AGG 0.538674 7.3:+81796339 None:intergenic
CATTACTAAAGCATTGGTTG+AGG 0.542552 7.3:-81796415 MS.gene056311:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 7.3:+81796451 None:intergenic
ATGTTCTTTGAAACAATCCC+AGG 0.550779 7.3:+81796435 None:intergenic
GTGGTAGAGGTACCTAGACT+AGG 0.557229 7.3:-81796954 MS.gene056311:CDS
GGACAAGCACTATTTGGAGA+TGG 0.563405 7.3:-81796618 MS.gene056311:CDS
AGGCATGTCTACACCACTTG+TGG 0.569916 7.3:+81796857 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.572074 7.3:-81796855 MS.gene056311:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 7.3:+81796625 None:intergenic
GCAGCCTCCTTCCCTAGTCT+AGG 0.573798 7.3:+81796942 None:intergenic
CCTGCAACTATCTTGGCCAT+TGG 0.575694 7.3:-81797616 MS.gene056311:CDS
GGATTGAAAACAACGGGAGA+AGG 0.576518 7.3:-81796180 MS.gene056311:CDS
TCTTGCCTAGCATCCAATGA+AGG 0.579296 7.3:+81796984 None:intergenic
GTGATAAATCTATGATCAAG+AGG 0.591556 7.3:-81797070 MS.gene056311:CDS
TTAATCGTTTGCACCACAAG+TGG 0.591579 7.3:-81796870 MS.gene056311:CDS
CGTAAAGCTCAAAGGGCAGA+AGG 0.592263 7.3:-81797640 MS.gene056311:CDS
TGTGTTGGTTGTTTGTTCTG+AGG 0.596318 7.3:-81796694 MS.gene056311:CDS
AGAGGTACCTAGACTAGGGA+AGG 0.600145 7.3:-81796949 MS.gene056311:CDS
TGGCCCTAGTGATACTCACT+TGG 0.605912 7.3:-81796652 MS.gene056311:CDS
TGGTAGAGGTACCTAGACTA+GGG 0.618791 7.3:-81796953 MS.gene056311:CDS
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 7.3:-81796709 MS.gene056311:CDS
GGTACCTAGACTAGGGAAGG+AGG 0.631813 7.3:-81796946 MS.gene056311:CDS
ACAATTGCTCCTGATAGTGA+AGG 0.642382 7.3:-81796516 MS.gene056311:CDS
TTGTAATCAGAAATTCCCAA+TGG 0.643403 7.3:+81796384 None:intergenic
ATTGGATGCTAGGCAAGACA+TGG 0.648366 7.3:-81796979 MS.gene056311:CDS
GGTACATGATGTACCAACAA+GGG 0.652620 7.3:-81796782 MS.gene056311:CDS
TGTCCAAGTGAGTATCACTA+GGG 0.674277 7.3:+81796649 None:intergenic
TGCTAGGCAAGACATGGTGG+TGG 0.675229 7.3:-81796973 MS.gene056311:CDS
AGGTACATGATGTACCAACA+AGG 0.675679 7.3:-81796783 MS.gene056311:CDS
TAAAGACGGATTGAAAACAA+CGG 0.679510 7.3:-81796187 MS.gene056311:CDS
GTGAAGGCTATAAAAGAATG+GGG 0.681481 7.3:-81796918 MS.gene056311:CDS
GATTTGGCTGAGAACAACAA+AGG 0.683242 7.3:-81796723 MS.gene056311:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 7.3:+81796478 None:intergenic
GCGATACATGTATCTAACAG+AGG 0.700757 7.3:-81797048 MS.gene056311:CDS
CAATGGCCAAGATAGTTGCA+GGG 0.705812 7.3:+81797617 None:intergenic
ACGGGAGAAGGACTTGAATG+GGG 0.714424 7.3:-81796168 MS.gene056311:CDS
GGATGCTAGGCAAGACATGG+TGG 0.737305 7.3:-81796976 MS.gene056311:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTAATTACTTAAAATA+CGG - chr7.3:81796450-81796469 MS.gene056311:CDS 10.0%
!! AAGAATACATATATTTGAAA+AGG + chr7.3:81796416-81796435 None:intergenic 15.0%
!!! ACATTAGTACATTTTTTTTT+GGG + chr7.3:81796650-81796669 None:intergenic 15.0%
!!! GTAATTTTAAAGTAAAAATC+AGG + chr7.3:81796212-81796231 None:intergenic 15.0%
!!! GTATTTTAAGTAATTAACTA+TGG + chr7.3:81796451-81796470 None:intergenic 15.0%
!!! TATTATTTTTTAAAGCGAAT+TGG - chr7.3:81796363-81796382 MS.gene056311:CDS 15.0%
!!! TTTTTTTTTGAACAAGAATT+TGG + chr7.3:81796520-81796539 None:intergenic 15.0%
!! AGAAAAAAATCAACTAAAGA+CGG - chr7.3:81797561-81797580 MS.gene056311:CDS 20.0%
!! ATAATGTTTATCAATTTGGT+AGG + chr7.3:81796549-81796568 None:intergenic 20.0%
!! GCAAATAATGTTTATCAATT+TGG + chr7.3:81796553-81796572 None:intergenic 20.0%
!!! GACATTAGTACATTTTTTTT+TGG + chr7.3:81796651-81796670 None:intergenic 20.0%
! AAAGAACATTACTAAAGCAT+TGG - chr7.3:81797341-81797360 MS.gene056311:intron 25.0%
!! CTGATTACAATTCAATCTTT+TGG - chr7.3:81797391-81797410 MS.gene056311:intron 25.0%
!! TTTTTGAACAAGAATTTGGT+AGG + chr7.3:81796516-81796535 None:intergenic 25.0%
AAAACCAATCACATAATGAC+TGG + chr7.3:81796617-81796636 None:intergenic 30.0%
AGTGAAGGCTATAAAAGAAT+GGG - chr7.3:81796843-81796862 MS.gene056311:CDS 30.0%
CATTTCATTATAACCACTTC+AGG - chr7.3:81796670-81796689 MS.gene056311:CDS 30.0%
GTGATAAATCTATGATCAAG+AGG - chr7.3:81796692-81796711 MS.gene056311:CDS 30.0%
TCCTAATGTTTGTGAATACA+TGG - chr7.3:81796753-81796772 MS.gene056311:CDS 30.0%
TGAAATTCGTAAAGCTCAAA+GGG - chr7.3:81796115-81796134 MS.gene056311:CDS 30.0%
TGAGAAACCTATATTTGAGA+TGG - chr7.3:81797209-81797228 MS.gene056311:intron 30.0%
TTGTAATCAGAAATTCCCAA+TGG + chr7.3:81797381-81797400 None:intergenic 30.0%
! AACCTATATTTGAGATGGTT+TGG - chr7.3:81797214-81797233 MS.gene056311:intron 30.0%
! AAGTGAGTAATCTTTGACTT+TGG + chr7.3:81796874-81796893 None:intergenic 30.0%
! ATCATGTACCTTTTCACATA+TGG + chr7.3:81796970-81796989 None:intergenic 30.0%
! TCATGTACCTTTTCACATAT+GGG + chr7.3:81796969-81796988 None:intergenic 30.0%
!! TAAAGACGGATTGAAAACAA+CGG - chr7.3:81797575-81797594 MS.gene056311:CDS 30.0%
!!! GGACTAAATGACACTTTTTT+GGG - chr7.3:81796384-81796403 MS.gene056311:CDS 30.0%
!!! TGCATGTGTTTTGTTTATCT+TGG - chr7.3:81797530-81797549 MS.gene056311:CDS 30.0%
!!! TGGACTAAATGACACTTTTT+TGG - chr7.3:81796383-81796402 MS.gene056311:CDS 30.0%
ACCTTCTTAAAGATGTTCCT+GGG - chr7.3:81797310-81797329 MS.gene056311:intron 35.0%
CAGTGAAGGCTATAAAAGAA+TGG - chr7.3:81796842-81796861 MS.gene056311:CDS 35.0%
CATAGATTTATCACCTGAAG+TGG + chr7.3:81796686-81796705 None:intergenic 35.0%
CTGAAATTCGTAAAGCTCAA+AGG - chr7.3:81796114-81796133 MS.gene056311:CDS 35.0%
CTTGAATGGGGTGTATTATT+TGG - chr7.3:81797606-81797625 MS.gene056311:CDS 35.0%
CTTTGTTCAACACAATTTGC+TGG + chr7.3:81796182-81796201 None:intergenic 35.0%
GCCATGTATTCACAAACATT+AGG + chr7.3:81796757-81796776 None:intergenic 35.0%
GTCCAAACCATCTCAAATAT+AGG + chr7.3:81797219-81797238 None:intergenic 35.0%
GTGAAGGCTATAAAAGAATG+GGG - chr7.3:81796844-81796863 MS.gene056311:CDS 35.0%
TATCAACTCACCAAACTCTT+AGG - chr7.3:81796937-81796956 MS.gene056311:CDS 35.0%
! CTAGTTGCATTCATCTTTTC+AGG + chr7.3:81797477-81797496 None:intergenic 35.0%
! TCTACTTGATCTAGAATTGC+AGG + chr7.3:81797435-81797454 None:intergenic 35.0%
!! AAAGACGGATTGAAAACAAC+GGG - chr7.3:81797576-81797595 MS.gene056311:CDS 35.0%
!! AGAGAAGTGCTTAGTGAATA+TGG - chr7.3:81797495-81797514 MS.gene056311:intron 35.0%
!! ATGTTCTTTGAAACAATCCC+AGG + chr7.3:81797330-81797349 None:intergenic 35.0%
!! ATTCATCTTTTCAGGCTTCA+AGG + chr7.3:81797469-81797488 None:intergenic 35.0%
!! CATTACTAAAGCATTGGTTG+AGG - chr7.3:81797347-81797366 MS.gene056311:intron 35.0%
!! GAGTTTGGTGAGTTGATAAT+CGG + chr7.3:81796935-81796954 None:intergenic 35.0%
!! TGGGGTGTATTATTTGGTTT+TGG - chr7.3:81797612-81797631 MS.gene056311:CDS 35.0%
!!! GTATTATTTGGTTTTGGACC+AGG - chr7.3:81797618-81797637 MS.gene056311:CDS 35.0%
ACCAGGACTTACCATTGAAA+CGG - chr7.3:81797635-81797654 MS.gene056311:CDS 40.0%
ACGCAAAACAACCGTTTCAA+TGG + chr7.3:81797649-81797668 None:intergenic 40.0%
AGGTACATGATGTACCAACA+AGG - chr7.3:81796979-81796998 MS.gene056311:CDS 40.0%
CAAATAGTGCTTGTCCAACA+AGG + chr7.3:81797140-81797159 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG - chr7.3:81797309-81797328 MS.gene056311:intron 40.0%
CTTGTTGGACAAGCACTATT+TGG - chr7.3:81797138-81797157 MS.gene056311:intron 40.0%
GAGACCAGTCATTATGTGAT+TGG - chr7.3:81796610-81796629 MS.gene056311:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG - chr7.3:81797039-81797058 MS.gene056311:CDS 40.0%
GCGATACATGTATCTAACAG+AGG - chr7.3:81796714-81796733 MS.gene056311:CDS 40.0%
GCTTCGTTTGGCTAAAGATT+TGG - chr7.3:81797023-81797042 MS.gene056311:CDS 40.0%
GGTACATGATGTACCAACAA+GGG - chr7.3:81796980-81796999 MS.gene056311:CDS 40.0%
TGAATACATGGCACCTTCAT+TGG - chr7.3:81796765-81796784 MS.gene056311:CDS 40.0%
TGTCCAAGTGAGTATCACTA+GGG + chr7.3:81797116-81797135 None:intergenic 40.0%
TTAATCGTTTGCACCACAAG+TGG - chr7.3:81796892-81796911 MS.gene056311:CDS 40.0%
! ACAATTGCTCCTGATAGTGA+AGG - chr7.3:81797246-81797265 MS.gene056311:intron 40.0%
! ATCTTTTGGATTGCACATCC+TGG - chr7.3:81797405-81797424 MS.gene056311:intron 40.0%
! TCCCAGGAACATCTTTAAGA+AGG + chr7.3:81797314-81797333 None:intergenic 40.0%
!! GGTTTCTCAATTTCTGAGAC+TGG + chr7.3:81797198-81797217 None:intergenic 40.0%
!! TGTGTTGGTTGTTTGTTCTG+AGG - chr7.3:81797068-81797087 MS.gene056311:CDS 40.0%
AACGGGAGAAGGACTTGAAT+GGG - chr7.3:81797593-81797612 MS.gene056311:CDS 45.0%
ACCGTTTCAATGGTAAGTCC+TGG + chr7.3:81797639-81797658 None:intergenic 45.0%
ATGTTAGTCCAGCTTCACGA+AGG + chr7.3:81797287-81797306 None:intergenic 45.0%
ATTGGATGCTAGGCAAGACA+TGG - chr7.3:81796783-81796802 MS.gene056311:CDS 45.0%
CAATGGCCAAGATAGTTGCA+GGG + chr7.3:81796148-81796167 None:intergenic 45.0%
CTGTCCAAGTGAGTATCACT+AGG + chr7.3:81797117-81797136 None:intergenic 45.0%
GATAGTGAAGGAGCCATTGA+TGG - chr7.3:81797258-81797277 MS.gene056311:intron 45.0%
GGACAAGCACTATTTGGAGA+TGG - chr7.3:81797144-81797163 MS.gene056311:intron 45.0%
GGATTGAAAACAACGGGAGA+AGG - chr7.3:81797582-81797601 MS.gene056311:CDS 45.0%
GTCTTCGCCCATATGTGAAA+AGG - chr7.3:81796959-81796978 MS.gene056311:CDS 45.0%
TCAATGGCTCCTTCACTATC+AGG + chr7.3:81797258-81797277 None:intergenic 45.0%
TCTTGCCTAGCATCCAATGA+AGG + chr7.3:81796781-81796800 None:intergenic 45.0%
TGCTGGATTTGCAGTACCAA+TGG + chr7.3:81796165-81796184 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG + chr7.3:81797274-81797293 None:intergenic 45.0%
! TTTTGGATTGCACATCCTGG+TGG - chr7.3:81797408-81797427 MS.gene056311:intron 45.0%
!! AACGGTTGTTTTGCGTAGTG+TGG - chr7.3:81797653-81797672 MS.gene056311:CDS 45.0%
!! TGGTAGAGGTACCTAGACTA+GGG - chr7.3:81796809-81796828 MS.gene056311:CDS 45.0%
!!! TACCAACAAGGGTGTTTTGC+AGG - chr7.3:81796991-81797010 MS.gene056311:CDS 45.0%
ACAAGTGGTGTAGACATGCC+TGG - chr7.3:81796907-81796926 MS.gene056311:CDS 50.0%
ACGGGAGAAGGACTTGAATG+GGG - chr7.3:81797594-81797613 MS.gene056311:CDS 50.0%
AGAAGGCCCTGCAACTATCT+TGG - chr7.3:81796139-81796158 MS.gene056311:CDS 50.0%
AGGCATGTCTACACCACTTG+TGG + chr7.3:81796908-81796927 None:intergenic 50.0%
CAACGGGAGAAGGACTTGAA+TGG - chr7.3:81797592-81797611 MS.gene056311:CDS 50.0%
CACCTGCAAAACACCCTTGT+TGG + chr7.3:81796996-81797015 None:intergenic 50.0%
CCAATGGCCAAGATAGTTGC+AGG + chr7.3:81796149-81796168 None:intergenic 50.0%
CCTGCAACTATCTTGGCCAT+TGG - chr7.3:81796146-81796165 MS.gene056311:CDS 50.0%
CGTAAAGCTCAAAGGGCAGA+AGG - chr7.3:81796122-81796141 MS.gene056311:CDS 50.0%
GTCACTGCTGTCACATTTCG+TGG - chr7.3:81797090-81797109 MS.gene056311:intron 50.0%
GTTGAGGCTTTCGAGCCATT+GGG - chr7.3:81797363-81797382 MS.gene056311:intron 50.0%
TGGCACCTTCATTGGATGCT+AGG - chr7.3:81796773-81796792 MS.gene056311:CDS 50.0%
TGGCCCTAGTGATACTCACT+TGG - chr7.3:81797110-81797129 MS.gene056311:intron 50.0%
TGGGCGAAGACCTAAGAGTT+TGG + chr7.3:81796950-81796969 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG - chr7.3:81797123-81797142 MS.gene056311:intron 50.0%
! TCTAGAATTGCAGGTCCACC+AGG + chr7.3:81797426-81797445 None:intergenic 50.0%
!! AGAGGTACCTAGACTAGGGA+AGG - chr7.3:81796813-81796832 MS.gene056311:CDS 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG - chr7.3:81797053-81797072 MS.gene056311:CDS 50.0%
!! GTGAGTTGATAATCGGCTCC+AGG + chr7.3:81796928-81796947 None:intergenic 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG - chr7.3:81796808-81796827 MS.gene056311:CDS 50.0%
!!! CAACAAGGGTGTTTTGCAGG+TGG - chr7.3:81796994-81797013 MS.gene056311:CDS 50.0%
GATGGTCACCTTCGTGAAGC+TGG - chr7.3:81797276-81797295 MS.gene056311:intron 55.0%
GGAGCTGCTGCACTCATTGT+TGG - chr7.3:81797165-81797184 MS.gene056311:intron 55.0%
GGATGCTAGGCAAGACATGG+TGG - chr7.3:81796786-81796805 MS.gene056311:CDS 55.0%
GGTACCTAGACTAGGGAAGG+AGG - chr7.3:81796816-81796835 MS.gene056311:CDS 55.0%
GGTTGAGGCTTTCGAGCCAT+TGG - chr7.3:81797362-81797381 MS.gene056311:intron 55.0%
TGCTAGGCAAGACATGGTGG+TGG - chr7.3:81796789-81796808 MS.gene056311:CDS 55.0%
!! AGGGTGTTTTGCAGGTGGCA+CGG - chr7.3:81796999-81797018 MS.gene056311:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG - chr7.3:81796795-81796814 MS.gene056311:CDS 55.0%
AGGGAAGGAGGCTGCAGTGA+AGG - chr7.3:81796828-81796847 MS.gene056311:CDS 60.0%
AGGTGGCACGGTGCTTCGTT+TGG - chr7.3:81797011-81797030 MS.gene056311:CDS 60.0%
GCAGCCTCCTTCCCTAGTCT+AGG + chr7.3:81796823-81796842 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 81796101 81797683 81796101 ID=MS.gene056311
chr7.3 mRNA 81796101 81797683 81796101 ID=MS.gene056311.t1;Parent=MS.gene056311
chr7.3 exon 81797506 81797683 81797506 ID=MS.gene056311.t1.exon1;Parent=MS.gene056311.t1
chr7.3 CDS 81797506 81797683 81797506 ID=cds.MS.gene056311.t1;Parent=MS.gene056311.t1
chr7.3 exon 81796101 81797092 81796101 ID=MS.gene056311.t1.exon2;Parent=MS.gene056311.t1
chr7.3 CDS 81796101 81797092 81796101 ID=cds.MS.gene056311.t1;Parent=MS.gene056311.t1
Gene Sequence

>MS.gene056311

ATGGTGAGTGTGTCTGAAATTCGTAAAGCTCAAAGGGCAGAAGGCCCTGCAACTATCTTGGCCATTGGTACTGCAAATCCAGCAAATTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAAATTACAAATAGTGAGCACAAAACTGAACTTAAAGAGAAATTTCAGCGCATGTGTAAGTATTCTTCTCTTCTATTCATTATTTTGATATACTTGAGTAGAAAAATATTTTTAGATACTTTACGTTTACATTTATTTCTATTATTTTTTAAAGCGAATTGGACTAAATGACACTTTTTTGGGTTCGTTCCTTTTCAAATATATGTATTCTTAATATATGATCACCATAGTTAATTACTTAAAATACGGTACATATGTCATTATCTGTAGAAGTCATGATATTAATATTCCTACCAAATTCTTGTTCAAAAAAAAAAATATTCCTACCAAATTGATAAACATTATTTGCATTAAAAGATCAATTATTTTTTCGTCAAAAAAATAAAGAGACCAGTCATTATGTGATTGGTTTTGTATGAATTACCCAAAAAAAAATGTACTAATGTCATTTCATTATAACCACTTCAGGTGATAAATCTATGATCAAGAGGCGATACATGTATCTAACAGAGGAGATTTTGAAAGAAAATCCTAATGTTTGTGAATACATGGCACCTTCATTGGATGCTAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGGAAGGAGGCTGCAGTGAAGGCTATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCCGATTATCAACTCACCAAACTCTTAGGTCTTCGCCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGTTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAGGTCACTGCTGTCACATTTCGTGGCCCTAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTCATTGTTGGTTCTGATCCAGTCTCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTACTAAAGCATTGGTTGAGGCTTTCGAGCCATTGGGAATTTCTGATTACAATTCAATCTTTTGGATTGCACATCCTGGTGGACCTGCAATTCTAGATCAAGTAGAGCAAAAGTTAGCCTTGAAGCCTGAAAAGATGAATGCAACTAGAGAAGTGCTTAGTGAATATGGAAATATGTCGAGTGCATGTGTTTTGTTTATCTTGGATGAAATGAGAAAAAAATCAACTAAAGACGGATTGAAAACAACGGGAGAAGGACTTGAATGGGGTGTATTATTTGGTTTTGGACCAGGACTTACCATTGAAACGGTTGTTTTGCGTAGTGTGGCCATATGA

Protein sequence

>MS.gene056311.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVSEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI