Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35153.t1 | XP_003608499.1 | 98.2 | 277 | 1 | 1 | 1 | 277 | 1 | 273 | 9.10E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35153.t1 | O64700 | 88.7 | 248 | 28 | 0 | 31 | 278 | 28 | 275 | 7.6e-128 | 458.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35153.t1 | G7JDZ5 | 98.2 | 277 | 1 | 1 | 1 | 277 | 1 | 273 | 6.6e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05594 | MS.gene35153 | 0.841009 | 6.16E-58 | -1.69E-46 |
| MS.gene057469 | MS.gene35153 | 0.825758 | 3.94E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene35153 | 0.80885 | 2.53E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene35153 | 0.804548 | 2.05E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene35153 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene05886 | MS.gene35153 | 0.881272 | 2.75E-70 | -1.69E-46 |
| MS.gene059420 | MS.gene35153 | 0.817058 | 4.02E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35153.t1 | MTR_4g096770 | 97.473 | 277 | 3 | 2 | 1 | 277 | 1 | 273 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35153.t1 | AT2G34470 | 88.710 | 248 | 28 | 0 | 31 | 278 | 28 | 275 | 2.00e-164 | 457 |
| MS.gene35153.t1 | AT2G34470 | 88.710 | 248 | 28 | 0 | 31 | 278 | 29 | 276 | 2.24e-164 | 457 |
Find 77 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTGCTTCTTTGTGAATC+TGG | 0.154744 | 4.4:-19341938 | MS.gene35153:CDS |
| AGCCAGTTCCCTGCTGAAAT+TGG | 0.282236 | 4.4:+19341225 | None:intergenic |
| GGTGTCCTCATGCTGCTATT+CGG | 0.299094 | 4.4:-19342018 | MS.gene35153:CDS |
| AGAGCTTTCGAATCTTTATA+AGG | 0.302848 | 4.4:-19341963 | MS.gene35153:CDS |
| CAGTAACAACCAATGGCTTC+TGG | 0.311045 | 4.4:-19342448 | None:intergenic |
| TCATGCAGCGGGACGCTCTT+AGG | 0.322100 | 4.4:-19340954 | MS.gene35153:CDS |
| ATTTACATCATAGATGTATC+TGG | 0.342801 | 4.4:-19341193 | MS.gene35153:CDS |
| CATGTTCATGTTCATGTTCA+TGG | 0.343463 | 4.4:+19342413 | None:intergenic |
| ATTTGCTTCTTTGTGAATCT+GGG | 0.355601 | 4.4:-19341937 | MS.gene35153:CDS |
| GTGTCCTCATGCTGCTATTC+GGG | 0.380660 | 4.4:-19342017 | MS.gene35153:CDS |
| AGCTCTTCTGCTGAAGAATC+CGG | 0.384758 | 4.4:+19342267 | None:intergenic |
| TTGAAATCTCTGTTGATAAG+AGG | 0.386036 | 4.4:+19342241 | None:intergenic |
| ACAGCACGTATCCTTTCTTC+TGG | 0.400039 | 4.4:+19342052 | None:intergenic |
| AGATCAGCTTGTGTGATTCC+AGG | 0.402269 | 4.4:+19341142 | None:intergenic |
| GCTTTCACTGTTGGCATTGG+TGG | 0.407273 | 4.4:-19342211 | MS.gene35153:CDS |
| AAGCATGGTGATTCATTCAT+AGG | 0.410944 | 4.4:-19342358 | MS.gene35153:CDS |
| TGCCAATTTCAGCAGGGAAC+TGG | 0.418166 | 4.4:-19341227 | MS.gene35153:CDS |
| ACTGACCTTGCACAAGCAAT+TGG | 0.422106 | 4.4:-19340991 | MS.gene35153:CDS |
| GAGGATATTAGTATTAATCT+TGG | 0.442044 | 4.4:-19341995 | MS.gene35153:CDS |
| GGGGCCATTTGTATTTGCTC+AGG | 0.445112 | 4.4:-19340920 | MS.gene35153:intron |
| AATGAAAGAGCTTTCACTGT+TGG | 0.461268 | 4.4:-19342220 | MS.gene35153:CDS |
| ACAAGCAATTGGAGCTGACT+TGG | 0.465545 | 4.4:-19340980 | MS.gene35153:CDS |
| ATTCCAGGACCACCTTTCCT+AGG | 0.479928 | 4.4:+19341157 | None:intergenic |
| AGGATACGTGCTGTTGAAAC+TGG | 0.483161 | 4.4:-19342043 | MS.gene35153:CDS |
| ATTCCTAGGAAAGGTGGTCC+TGG | 0.484751 | 4.4:-19341160 | MS.gene35153:CDS |
| ACTTGGCTGCCAATTTCAGC+AGG | 0.489264 | 4.4:-19341234 | MS.gene35153:CDS |
| ATTGGTGGACCTGTTGGTAC+TGG | 0.493495 | 4.4:-19342196 | MS.gene35153:CDS |
| TGTGGTCGTGGTCGTGGTCA+TGG | 0.497368 | 4.4:+19342380 | None:intergenic |
| CTAACCTGAGCAAATACAAA+TGG | 0.498076 | 4.4:+19340916 | None:intergenic |
| GTGCAAGACCGTCGTGGCTA+TGG | 0.498501 | 4.4:+19342317 | None:intergenic |
| CAGGCATGGGAAGCAGCCAC+AGG | 0.500416 | 4.4:-19339077 | MS.gene35153:CDS |
| ACGCTCTTAGGATGAGAGAT+GGG | 0.500618 | 4.4:-19340942 | MS.gene35153:CDS |
| ATGTTCATGTTCATGTTCAT+GGG | 0.501934 | 4.4:+19342414 | None:intergenic |
| CATGCTTGTGGTCGTGGTCG+TGG | 0.508140 | 4.4:+19342374 | None:intergenic |
| TGACTTGGGTGTCATGCAGC+GGG | 0.509346 | 4.4:-19340965 | MS.gene35153:CDS |
| AATCACCATGCTTGTGGTCG+TGG | 0.512675 | 4.4:+19342368 | None:intergenic |
| AAGAATCCGGGAGAGTAGAT+TGG | 0.514564 | 4.4:+19342280 | None:intergenic |
| GATATATTTACCAAAGAAGA+TGG | 0.517233 | 4.4:-19342103 | MS.gene35153:CDS |
| GATTCATTCATAGGCGCTGA+TGG | 0.520559 | 4.4:-19342349 | MS.gene35153:CDS |
| CACGAACCAATCTACTCTCC+CGG | 0.524829 | 4.4:-19342286 | MS.gene35153:CDS |
| CTGGTGGTGATAAAATTCCT+AGG | 0.528983 | 4.4:-19341174 | MS.gene35153:CDS |
| ATAAAGCGCTGCCAGAAGAA+AGG | 0.530907 | 4.4:-19342063 | MS.gene35153:CDS |
| AGAGCTTTCACTGTTGGCAT+TGG | 0.531958 | 4.4:-19342214 | MS.gene35153:CDS |
| GCTCTTCTGCTGAAGAATCC+GGG | 0.539942 | 4.4:+19342268 | None:intergenic |
| CGCTCTTAGGATGAGAGATG+GGG | 0.549938 | 4.4:-19340941 | MS.gene35153:CDS |
| CTGACTTGGGTGTCATGCAG+CGG | 0.557266 | 4.4:-19340966 | MS.gene35153:CDS |
| GTTGGCATTGGTGGACCTGT+TGG | 0.557841 | 4.4:-19342202 | MS.gene35153:CDS |
| GATAAAATTCCTAGGAAAGG+TGG | 0.562010 | 4.4:-19341166 | MS.gene35153:CDS |
| GACGCTCTTAGGATGAGAGA+TGG | 0.565202 | 4.4:-19340943 | MS.gene35153:CDS |
| TTTGCTTCTTTGTGAATCTG+GGG | 0.566680 | 4.4:-19341936 | MS.gene35153:CDS |
| TTGCTTCTTTGTGAATCTGG+GGG | 0.567232 | 4.4:-19341935 | MS.gene35153:CDS |
| CGGGAGAGTAGATTGGTTCG+TGG | 0.576489 | 4.4:+19342287 | None:intergenic |
| TGATCGCCTCCAGAAGCCAT+TGG | 0.580226 | 4.4:+19342439 | None:intergenic |
| GAAGCACAATGTTGGAGTAG+AGG | 0.590855 | 4.4:-19339120 | MS.gene35153:CDS |
| GTACAGGTGAAGCACAATGT+TGG | 0.592303 | 4.4:-19339128 | MS.gene35153:intron |
| GGTGATAAAATTCCTAGGAA+AGG | 0.593250 | 4.4:-19341169 | MS.gene35153:CDS |
| CAGCTCCAATTGCTTGTGCA+AGG | 0.599925 | 4.4:+19340986 | None:intergenic |
| GGGAGAGTAGATTGGTTCGT+GGG | 0.604786 | 4.4:+19342288 | None:intergenic |
| CACGACCACGACCACAAGCA+TGG | 0.605374 | 4.4:-19342373 | MS.gene35153:CDS |
| TCCTCATGCTGCTATTCGGG+AGG | 0.609749 | 4.4:-19342014 | MS.gene35153:CDS |
| CAAGCAATTGGAGCTGACTT+GGG | 0.629109 | 4.4:-19340979 | MS.gene35153:CDS |
| TCAACGGCGTTTCTTCCCTG+TGG | 0.629714 | 4.4:+19339061 | None:intergenic |
| GCTCTTAGGATGAGAGATGG+GGG | 0.629998 | 4.4:-19340940 | MS.gene35153:CDS |
| AGATTCGAAAGCTCTTCAAG+TGG | 0.633762 | 4.4:+19341971 | None:intergenic |
| TAGATTGGTTCGTGGGAGTG+TGG | 0.638881 | 4.4:+19342295 | None:intergenic |
| TGAATGAATCACCATGCTTG+TGG | 0.650133 | 4.4:+19342362 | None:intergenic |
| AGGCATGGGAAGCAGCCACA+GGG | 0.654229 | 4.4:-19339076 | MS.gene35153:CDS |
| TCCTCCCGAATAGCAGCATG+AGG | 0.657620 | 4.4:+19342013 | None:intergenic |
| CTTGGCTGCCAATTTCAGCA+GGG | 0.659539 | 4.4:-19341233 | MS.gene35153:CDS |
| TACGTGCTGTTGAAACTGGT+GGG | 0.667714 | 4.4:-19342039 | MS.gene35153:CDS |
| ATACGTGCTGTTGAAACTGG+TGG | 0.670765 | 4.4:-19342040 | MS.gene35153:CDS |
| TACATCATAGATGTATCTGG+TGG | 0.674288 | 4.4:-19341190 | MS.gene35153:CDS |
| TAACAACCAATGGCTTCTGG+AGG | 0.679821 | 4.4:-19342445 | None:intergenic |
| CTCTTAGGATGAGAGATGGG+GGG | 0.699631 | 4.4:-19340939 | MS.gene35153:CDS |
| ACAAAGTGCTAACATCAAAG+CGG | 0.717423 | 4.4:+19342168 | None:intergenic |
| AAAGTGTACCATAGCCACGA+CGG | 0.720385 | 4.4:-19342325 | MS.gene35153:CDS |
| AGTGTGGTGCAAGACCGTCG+TGG | 0.747780 | 4.4:+19342311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAATTAATGTAATTTA+TGG | + | chr4.4:19341124-19341143 | None:intergenic | 10.0% |
| !! | AAAAATACAAAATACATGTT+TGG | + | chr4.4:19339758-19339777 | None:intergenic | 15.0% |
| !! | AGTTTGATATAAAAAAACTT+TGG | - | chr4.4:19340213-19340232 | MS.gene35153:intron | 15.0% |
| !!! | AAACATGTATTTTGTATTTT+TGG | - | chr4.4:19339757-19339776 | MS.gene35153:intron | 15.0% |
| !!! | ATTTTTGATTTTGATGATTA+TGG | - | chr4.4:19340449-19340468 | MS.gene35153:intron | 15.0% |
| !!! | TCTTAGATTTGTTTTTAAAT+AGG | - | chr4.4:19341880-19341899 | MS.gene35153:intron | 15.0% |
| !! | AATATTAACAGGTATTAACT+TGG | + | chr4.4:19340793-19340812 | None:intergenic | 20.0% |
| !! | ATAGAACACTTTGAATATTT+GGG | - | chr4.4:19341026-19341045 | MS.gene35153:intron | 20.0% |
| !! | ATATAACTATTTAGTAGAAC+TGG | - | chr4.4:19342084-19342103 | MS.gene35153:CDS | 20.0% |
| !! | ATATAAGCAGAAGTAAAATT+TGG | + | chr4.4:19342068-19342087 | None:intergenic | 20.0% |
| !! | ATATTAACAGGTATTAACTT+GGG | + | chr4.4:19340792-19340811 | None:intergenic | 20.0% |
| !! | TAACAAGAGTAGTAAAATAT+TGG | + | chr4.4:19342330-19342349 | None:intergenic | 20.0% |
| !! | TAATACCTGTTAATATTGTT+GGG | - | chr4.4:19340796-19340815 | MS.gene35153:intron | 20.0% |
| !! | TATAAGCAGAAGTAAAATTT+GGG | + | chr4.4:19342067-19342086 | None:intergenic | 20.0% |
| !! | TCCAACAAAAATACTAAAAT+AGG | - | chr4.4:19341238-19341257 | MS.gene35153:CDS | 20.0% |
| !! | TTAATACCTGTTAATATTGT+TGG | - | chr4.4:19340795-19340814 | MS.gene35153:intron | 20.0% |
| !! | TTTCATCTTTCATAATAGTA+AGG | - | chr4.4:19341636-19341655 | MS.gene35153:intron | 20.0% |
| !!! | ACCTATTTTAGTATTTTTGT+TGG | + | chr4.4:19341242-19341261 | None:intergenic | 20.0% |
| !!! | TTTGATAATATTAGTCCTTT+TGG | - | chr4.4:19339985-19340004 | MS.gene35153:intron | 20.0% |
| ! | AAAAAAATCGCTGTGATATA+AGG | + | chr4.4:19342229-19342248 | None:intergenic | 25.0% |
| ! | AAAAGGAAAGGAAATTAACA+CGG | + | chr4.4:19341538-19341557 | None:intergenic | 25.0% |
| ! | AAACAAGTGTAATAACATAG+AGG | + | chr4.4:19340184-19340203 | None:intergenic | 25.0% |
| ! | AAATTGATTGATAGATCGAT+TGG | - | chr4.4:19341837-19341856 | MS.gene35153:intron | 25.0% |
| ! | AACAATTCAGTTGTTTAAAC+AGG | + | chr4.4:19341762-19341781 | None:intergenic | 25.0% |
| ! | AACTAAACTAACAATCCAAA+AGG | + | chr4.4:19340003-19340022 | None:intergenic | 25.0% |
| ! | AACTAATTGGACTTAATTTC+AGG | - | chr4.4:19340472-19340491 | MS.gene35153:intron | 25.0% |
| ! | AAGAGTAGTAAAATATTGGT+GGG | + | chr4.4:19342326-19342345 | None:intergenic | 25.0% |
| ! | AATGTGAAGTGGTTTATATT+TGG | + | chr4.4:19339873-19339892 | None:intergenic | 25.0% |
| ! | ACAATTCAGTTGTTTAAACA+GGG | + | chr4.4:19341761-19341780 | None:intergenic | 25.0% |
| ! | ACTAATTCGATCAATTGTTA+CGG | - | chr4.4:19340043-19340062 | MS.gene35153:intron | 25.0% |
| ! | ATTTACATCATAGATGTATC+TGG | - | chr4.4:19340304-19340323 | MS.gene35153:intron | 25.0% |
| ! | CAGTAATTTGAGAAATAACA+TGG | + | chr4.4:19341495-19341514 | None:intergenic | 25.0% |
| ! | CGTTATTTGTAATACAAGAA+AGG | + | chr4.4:19342299-19342318 | None:intergenic | 25.0% |
| ! | GAATGGTATTTATACAAGAT+GGG | + | chr4.4:19341587-19341606 | None:intergenic | 25.0% |
| ! | GAGGATATTAGTATTAATCT+TGG | - | chr4.4:19339502-19339521 | MS.gene35153:intron | 25.0% |
| ! | GAGTATTTATGATTGAAAGT+TGG | - | chr4.4:19341910-19341929 | MS.gene35153:intron | 25.0% |
| ! | GATAGAACACTTTGAATATT+TGG | - | chr4.4:19341025-19341044 | MS.gene35153:intron | 25.0% |
| ! | GATATATTTACCAAAGAAGA+TGG | - | chr4.4:19339394-19339413 | MS.gene35153:intron | 25.0% |
| ! | TACTAAAATAGGTTGTTTGA+TGG | - | chr4.4:19341249-19341268 | MS.gene35153:intron | 25.0% |
| ! | TATACATTAGGTTTGTATCT+TGG | - | chr4.4:19341349-19341368 | MS.gene35153:intron | 25.0% |
| ! | TCTCTTTCAAATTTATTACC+TGG | + | chr4.4:19341437-19341456 | None:intergenic | 25.0% |
| ! | TCTGATATAAATTCTGATTG+TGG | + | chr4.4:19341805-19341824 | None:intergenic | 25.0% |
| ! | TGATTTATAGAAGTGAATCA+AGG | - | chr4.4:19342017-19342036 | MS.gene35153:CDS | 25.0% |
| ! | TTTCTACTCAACATTTAAGA+TGG | + | chr4.4:19341405-19341424 | None:intergenic | 25.0% |
| !! | AATTGTGAATCATGTTTTAC+AGG | - | chr4.4:19342401-19342420 | MS.gene35153:CDS | 25.0% |
| !! | GTTCTATCTGATTTGATAAA+GGG | + | chr4.4:19341013-19341032 | None:intergenic | 25.0% |
| !! | TGTTCTATCTGATTTGATAA+AGG | + | chr4.4:19341014-19341033 | None:intergenic | 25.0% |
| !! | TTGATGATTATGGAACTAAT+TGG | - | chr4.4:19340459-19340478 | MS.gene35153:intron | 25.0% |
| !! | TTTGCATTAACTTTTGTAGA+TGG | + | chr4.4:19341169-19341188 | None:intergenic | 25.0% |
| !!! | CATGTTATTTCTCAAATTAC+TGG | - | chr4.4:19341493-19341512 | MS.gene35153:intron | 25.0% |
| !!! | CTATACATGATTTTAAGGTT+AGG | + | chr4.4:19341685-19341704 | None:intergenic | 25.0% |
| !!! | TATAATGATGAGAGTATTTG+AGG | - | chr4.4:19341141-19341160 | MS.gene35153:CDS | 25.0% |
| !!! | TATATCACAGCGATTTTTTT+CGG | - | chr4.4:19342229-19342248 | MS.gene35153:CDS | 25.0% |
| !!! | TGTATTTTTGGTTTCATAGT+GGG | - | chr4.4:19339769-19339788 | MS.gene35153:intron | 25.0% |
| !!! | TTGTATTTTTGGTTTCATAG+TGG | - | chr4.4:19339768-19339787 | MS.gene35153:intron | 25.0% |
| AAAATACATGTTTGGATTCG+TGG | + | chr4.4:19339750-19339769 | None:intergenic | 30.0% | |
| AATGTTGAGTAGAAAACAAC+TGG | - | chr4.4:19341410-19341429 | MS.gene35153:intron | 30.0% | |
| AGAGCTTTCGAATCTTTATA+AGG | - | chr4.4:19339534-19339553 | MS.gene35153:intron | 30.0% | |
| ATGTTCATGTTCATGTTCAT+GGG | + | chr4.4:19339086-19339105 | None:intergenic | 30.0% | |
| ATTTGCTTCTTTGTGAATCT+GGG | - | chr4.4:19339560-19339579 | MS.gene35153:intron | 30.0% | |
| CAAGAGTAGTAAAATATTGG+TGG | + | chr4.4:19342327-19342346 | None:intergenic | 30.0% | |
| CACTCAGTTTCTTAATCTAT+AGG | - | chr4.4:19339951-19339970 | MS.gene35153:intron | 30.0% | |
| GCTTCTTAGTAACATCTATA+AGG | - | chr4.4:19342148-19342167 | MS.gene35153:CDS | 30.0% | |
| GGAAAGAAACAAAATACTGT+GGG | - | chr4.4:19342117-19342136 | MS.gene35153:CDS | 30.0% | |
| GGAATGGTATTTATACAAGA+TGG | + | chr4.4:19341588-19341607 | None:intergenic | 30.0% | |
| TCCATCAAAAAATTGCATGT+TGG | - | chr4.4:19341309-19341328 | MS.gene35153:intron | 30.0% | |
| TGAGAAATAACATGGAAAGA+AGG | + | chr4.4:19341487-19341506 | None:intergenic | 30.0% | |
| TGGAAAGAAACAAAATACTG+TGG | - | chr4.4:19342116-19342135 | MS.gene35153:CDS | 30.0% | |
| TTCAGAATACACTCAACAAT+GGG | + | chr4.4:19341609-19341628 | None:intergenic | 30.0% | |
| TTTCTTTCTTGCAATCTTTG+TGG | - | chr4.4:19340623-19340642 | MS.gene35153:intron | 30.0% | |
| ! | AACACTGAACACCATAATTT+TGG | + | chr4.4:19339715-19339734 | None:intergenic | 30.0% |
| ! | TCAATTTTTGTTGCATAGTC+AGG | - | chr4.4:19339928-19339947 | MS.gene35153:intron | 30.0% |
| ! | TGTGGCTATACATGATTTTA+AGG | + | chr4.4:19341690-19341709 | None:intergenic | 30.0% |
| ! | TTGAAATCTCTGTTGATAAG+AGG | + | chr4.4:19339259-19339278 | None:intergenic | 30.0% |
| ! | TTTGATGGACAATATGCTTA+GGG | + | chr4.4:19341298-19341317 | None:intergenic | 30.0% |
| ! | TTTTGTGTATAGCACTTACA+AGG | + | chr4.4:19340381-19340400 | None:intergenic | 30.0% |
| !! | AAGAAGGCATTCATTATTCT+TGG | + | chr4.4:19341471-19341490 | None:intergenic | 30.0% |
| !! | AGAAGGCATTCATTATTCTT+GGG | + | chr4.4:19341470-19341489 | None:intergenic | 30.0% |
| !! | CAATGGTTTTGCCAAAATTA+TGG | - | chr4.4:19339701-19339720 | MS.gene35153:intron | 30.0% |
| !! | TTTTGATGGACAATATGCTT+AGG | + | chr4.4:19341299-19341318 | None:intergenic | 30.0% |
| !!! | CAATGTTTTAGAAACCAAAC+CGG | - | chr4.4:19340829-19340848 | MS.gene35153:intron | 30.0% |
| !!! | CAATGTTTTGAAAACCAAAC+TGG | + | chr4.4:19340985-19341004 | None:intergenic | 30.0% |
| !!! | TCCAACATGCAATTTTTTGA+TGG | + | chr4.4:19341313-19341332 | None:intergenic | 30.0% |
| !!! | TGTTTTAGTCCTGAAATTGT+AGG | + | chr4.4:19340149-19340168 | None:intergenic | 30.0% |
| AACAGAGAAGCAAAAAGGAA+AGG | + | chr4.4:19341550-19341569 | None:intergenic | 35.0% | |
| AAGCATGGTGATTCATTCAT+AGG | - | chr4.4:19339139-19339158 | MS.gene35153:intron | 35.0% | |
| AATACACTCAACAATGGGAA+TGG | + | chr4.4:19341604-19341623 | None:intergenic | 35.0% | |
| AATGAAAGAGCTTTCACTGT+TGG | - | chr4.4:19339277-19339296 | MS.gene35153:intron | 35.0% | |
| ACATCAAATTGGAAATCTCC+GGG | - | chr4.4:19340852-19340871 | MS.gene35153:intron | 35.0% | |
| ATCTTTCTGCATCAATGTAC+AGG | - | chr4.4:19342353-19342372 | MS.gene35153:CDS | 35.0% | |
| ATTCGATCAATTGTTACGGA+TGG | - | chr4.4:19340047-19340066 | MS.gene35153:intron | 35.0% | |
| CAAAAACTCACCATCTTCTT+TGG | + | chr4.4:19339407-19339426 | None:intergenic | 35.0% | |
| CATGTTCATGTTCATGTTCA+TGG | + | chr4.4:19339087-19339106 | None:intergenic | 35.0% | |
| CATGTTGGATTTAGTTGAGT+TGG | - | chr4.4:19341324-19341343 | MS.gene35153:intron | 35.0% | |
| CTAACCTGAGCAAATACAAA+TGG | + | chr4.4:19340584-19340603 | None:intergenic | 35.0% | |
| CTTCAGAATACACTCAACAA+TGG | + | chr4.4:19341610-19341629 | None:intergenic | 35.0% | |
| GAACACTTTGAATATTTGGG+AGG | - | chr4.4:19341029-19341048 | MS.gene35153:intron | 35.0% | |
| GACATCAAATTGGAAATCTC+CGG | - | chr4.4:19340851-19340870 | MS.gene35153:intron | 35.0% | |
| GAGATTTCCAATTTGATGTC+CGG | + | chr4.4:19340851-19340870 | None:intergenic | 35.0% | |
| GATAAAATTCCTAGGAAAGG+TGG | - | chr4.4:19340331-19340350 | MS.gene35153:intron | 35.0% | |
| GATGACCCAACAATATTAAC+AGG | + | chr4.4:19340804-19340823 | None:intergenic | 35.0% | |
| GCTATACACAAAACTATCTC+TGG | - | chr4.4:19340388-19340407 | MS.gene35153:intron | 35.0% | |
| GCTATGGTTCAGTTATATGA+AGG | + | chr4.4:19340930-19340949 | None:intergenic | 35.0% | |
| GGTCATTCACGTTGTATTAA+TGG | + | chr4.4:19341664-19341683 | None:intergenic | 35.0% | |
| GGTGATAAAATTCCTAGGAA+AGG | - | chr4.4:19340328-19340347 | MS.gene35153:intron | 35.0% | |
| GTCATGTAAAGAATGCTGTT+AGG | + | chr4.4:19342277-19342296 | None:intergenic | 35.0% | |
| GTGATATAAGGTGAGTGATT+TGG | + | chr4.4:19342217-19342236 | None:intergenic | 35.0% | |
| GTGTGTGTTTGATATCACAA+TGG | - | chr4.4:19339684-19339703 | MS.gene35153:intron | 35.0% | |
| TACATCATAGATGTATCTGG+TGG | - | chr4.4:19340307-19340326 | MS.gene35153:intron | 35.0% | |
| TATCTGACACCTACAATTTC+AGG | - | chr4.4:19340137-19340156 | MS.gene35153:intron | 35.0% | |
| TTGATTGATAGATCGATTGG+TGG | - | chr4.4:19341840-19341859 | MS.gene35153:intron | 35.0% | |
| TTTGCTTCTTTGTGAATCTG+GGG | - | chr4.4:19339561-19339580 | MS.gene35153:intron | 35.0% | |
| ! | AAAGTGAGTTGAATGTGAAG+TGG | + | chr4.4:19339884-19339903 | None:intergenic | 35.0% |
| ! | ACAAAGTGCTAACATCAAAG+CGG | + | chr4.4:19339332-19339351 | None:intergenic | 35.0% |
| ! | ACAGGTATTAACTTGGGAAT+TGG | + | chr4.4:19340786-19340805 | None:intergenic | 35.0% |
| ! | CAAAGAAGATGGTGAGTTTT+TGG | - | chr4.4:19339405-19339424 | MS.gene35153:intron | 35.0% |
| ! | CAGTTTTTGTGCAGATAACT+TGG | - | chr4.4:19340246-19340265 | MS.gene35153:intron | 35.0% |
| ! | GAATCATGTTTTACAGGCAT+GGG | - | chr4.4:19342407-19342426 | MS.gene35153:CDS | 35.0% |
| ! | GATTTGCTTCTTTGTGAATC+TGG | - | chr4.4:19339559-19339578 | MS.gene35153:intron | 35.0% |
| ! | TGAATCATGTTTTACAGGCA+TGG | - | chr4.4:19342406-19342425 | MS.gene35153:CDS | 35.0% |
| !! | CGGTTTGGTTTCTAAAACAT+TGG | + | chr4.4:19340831-19340850 | None:intergenic | 35.0% |
| !! | GTATTTGCTCAGGTTAGTTT+AGG | - | chr4.4:19340587-19340606 | MS.gene35153:intron | 35.0% |
| !! | GTTGAGTTGGCATATACATT+AGG | - | chr4.4:19341337-19341356 | MS.gene35153:intron | 35.0% |
| !!! | GTTTTGAAAACCAAACTGGA+CGG | + | chr4.4:19340981-19341000 | None:intergenic | 35.0% |
| AACCAAACCGGACATCAAAT+TGG | - | chr4.4:19340841-19340860 | MS.gene35153:intron | 40.0% | |
| AGATTCGAAAGCTCTTCAAG+TGG | + | chr4.4:19339529-19339548 | None:intergenic | 40.0% | |
| AGCTCAACAGAGAAGCAAAA+AGG | + | chr4.4:19341555-19341574 | None:intergenic | 40.0% | |
| AGGCATTCATTATTCTTGGG+AGG | + | chr4.4:19341467-19341486 | None:intergenic | 40.0% | |
| ATACATGTTTGGATTCGTGG+TGG | + | chr4.4:19339747-19339766 | None:intergenic | 40.0% | |
| ATTCAGATTCTCTGCAGTCA+GGG | - | chr4.4:19340666-19340685 | MS.gene35153:intron | 40.0% | |
| CAAGCCATCTGATCTTTGAT+CGG | + | chr4.4:19340728-19340747 | None:intergenic | 40.0% | |
| CGGATGGAATAGTTTGATCT+AGG | - | chr4.4:19340063-19340082 | MS.gene35153:intron | 40.0% | |
| CTTTGAATATTTGGGAGGAG+CGG | - | chr4.4:19341034-19341053 | MS.gene35153:intron | 40.0% | |
| CTTTGCTAATCGATGATTGC+TGG | - | chr4.4:19341083-19341102 | MS.gene35153:intron | 40.0% | |
| GTGTAAAAATCGTACGTGTC+TGG | + | chr4.4:19339812-19339831 | None:intergenic | 40.0% | |
| TACATGTTTGGATTCGTGGT+GGG | + | chr4.4:19339746-19339765 | None:intergenic | 40.0% | |
| TCAATTGACTGAACTGTGCA+CGG | + | chr4.4:19340957-19340976 | None:intergenic | 40.0% | |
| TGAATGAATCACCATGCTTG+TGG | + | chr4.4:19339138-19339157 | None:intergenic | 40.0% | |
| TTCCAATTTGATGTCCGGTT+TGG | + | chr4.4:19340846-19340865 | None:intergenic | 40.0% | |
| TTGCTTCTTTGTGAATCTGG+GGG | - | chr4.4:19339562-19339581 | MS.gene35153:intron | 40.0% | |
| TTGTCCGATCAAAGATCAGA+TGG | - | chr4.4:19340721-19340740 | MS.gene35153:intron | 40.0% | |
| TTTGAACCGAGATTGAAGTG+CGG | - | chr4.4:19340899-19340918 | MS.gene35153:intron | 40.0% | |
| ! | AGTAGAACTGGTTCAGAACA+TGG | - | chr4.4:19342096-19342115 | MS.gene35153:CDS | 40.0% |
| ! | ATTTTGCCTTGGTATCTGGT+TGG | - | chr4.4:19341722-19341741 | MS.gene35153:intron | 40.0% |
| ! | CTGGTGGTGATAAAATTCCT+AGG | - | chr4.4:19340323-19340342 | MS.gene35153:intron | 40.0% |
| !! | CAAAATGCTCAGTGGTTTTG+TGG | + | chr4.4:19341708-19341727 | None:intergenic | 40.0% |
| !! | GTTTCTAAAGTTGTCGCGTA+TGG | - | chr4.4:19340020-19340039 | MS.gene35153:intron | 40.0% |
| AAAGCAGTTGAACCATGACC+CGG | + | chr4.4:19340873-19340892 | None:intergenic | 45.0% | |
| AAAGTGTACCATAGCCACGA+CGG | - | chr4.4:19339172-19339191 | MS.gene35153:intron | 45.0% | |
| AAGAATCCGGGAGAGTAGAT+TGG | + | chr4.4:19339220-19339239 | None:intergenic | 45.0% | |
| AATATTTGGGAGGAGCGGTA+GGG | - | chr4.4:19341039-19341058 | MS.gene35153:intron | 45.0% | |
| AATTGGAAATCTCCGGGTCA+TGG | - | chr4.4:19340858-19340877 | MS.gene35153:intron | 45.0% | |
| ACAAGCAATTGGAGCTGACT+TGG | - | chr4.4:19340517-19340536 | MS.gene35153:intron | 45.0% | |
| ACAGCACGTATCCTTTCTTC+TGG | + | chr4.4:19339448-19339467 | None:intergenic | 45.0% | |
| ACGCTCTTAGGATGAGAGAT+GGG | - | chr4.4:19340555-19340574 | MS.gene35153:intron | 45.0% | |
| ACTGACCTTGCACAAGCAAT+TGG | - | chr4.4:19340506-19340525 | MS.gene35153:intron | 45.0% | |
| AGAGCTTTCACTGTTGGCAT+TGG | - | chr4.4:19339283-19339302 | MS.gene35153:intron | 45.0% | |
| AGATCAGCTTGTGTGATTCC+AGG | + | chr4.4:19340358-19340377 | None:intergenic | 45.0% | |
| AGCTCTTCTGCTGAAGAATC+CGG | + | chr4.4:19339233-19339252 | None:intergenic | 45.0% | |
| CAAAATACTGTGGGCGAGTT+AGG | - | chr4.4:19342126-19342145 | MS.gene35153:CDS | 45.0% | |
| CGATCAAAGATCAGATGGCT+TGG | - | chr4.4:19340726-19340745 | MS.gene35153:intron | 45.0% | |
| GAAGCACAATGTTGGAGTAG+AGG | - | chr4.4:19342377-19342396 | MS.gene35153:CDS | 45.0% | |
| GAATTGGATCCCCTGAAGTT+CGG | + | chr4.4:19340770-19340789 | None:intergenic | 45.0% | |
| GAGTAGAAAACAACTGGTCC+AGG | - | chr4.4:19341416-19341435 | MS.gene35153:intron | 45.0% | |
| GATTCAGATTCTCTGCAGTC+AGG | - | chr4.4:19340665-19340684 | MS.gene35153:intron | 45.0% | |
| GCAATTCCAACCAGATACCA+AGG | + | chr4.4:19341731-19341750 | None:intergenic | 45.0% | |
| GCAGAGAATCTGAATCTTGC+TGG | + | chr4.4:19340661-19340680 | None:intergenic | 45.0% | |
| GTACAGGTGAAGCACAATGT+TGG | - | chr4.4:19342369-19342388 | MS.gene35153:CDS | 45.0% | |
| GTCAATTGAACCGTCCAGTT+TGG | - | chr4.4:19340968-19340987 | MS.gene35153:CDS | 45.0% | |
| GTTCAACCGCACTTCAATCT+CGG | + | chr4.4:19340908-19340927 | None:intergenic | 45.0% | |
| TACCAAGGCAAAATGCTCAG+TGG | + | chr4.4:19341716-19341735 | None:intergenic | 45.0% | |
| TGCTAATCGATGATTGCTGG+AGG | - | chr4.4:19341086-19341105 | MS.gene35153:intron | 45.0% | |
| ! | AACCACTGAGCATTTTGCCT+TGG | - | chr4.4:19341711-19341730 | MS.gene35153:intron | 45.0% |
| ! | AGGATACGTGCTGTTGAAAC+TGG | - | chr4.4:19339454-19339473 | MS.gene35153:intron | 45.0% |
| ! | ATACGTGCTGTTGAAACTGG+TGG | - | chr4.4:19339457-19339476 | MS.gene35153:intron | 45.0% |
| ! | CAAGCAATTGGAGCTGACTT+GGG | - | chr4.4:19340518-19340537 | MS.gene35153:intron | 45.0% |
| ! | GAGCATTTTGCCTTGGTATC+TGG | - | chr4.4:19341718-19341737 | MS.gene35153:intron | 45.0% |
| ! | TACGTGCTGTTGAAACTGGT+GGG | - | chr4.4:19339458-19339477 | MS.gene35153:intron | 45.0% |
| !! | ATAAAGCGCTGCCAGAAGAA+AGG | - | chr4.4:19339434-19339453 | MS.gene35153:intron | 45.0% |
| !! | GATTCATTCATAGGCGCTGA+TGG | - | chr4.4:19339148-19339167 | MS.gene35153:intron | 45.0% |
| AATCACCATGCTTGTGGTCG+TGG | + | chr4.4:19339132-19339151 | None:intergenic | 50.0% | |
| ACTTGGCTGCCAATTTCAGC+AGG | - | chr4.4:19340263-19340282 | MS.gene35153:intron | 50.0% | |
| AGCCAGTTCCCTGCTGAAAT+TGG | + | chr4.4:19340275-19340294 | None:intergenic | 50.0% | |
| ATTCCAGGACCACCTTTCCT+AGG | + | chr4.4:19340343-19340362 | None:intergenic | 50.0% | |
| ATTCCTAGGAAAGGTGGTCC+TGG | - | chr4.4:19340337-19340356 | MS.gene35153:intron | 50.0% | |
| CACGAACCAATCTACTCTCC+CGG | - | chr4.4:19339211-19339230 | MS.gene35153:intron | 50.0% | |
| CAGCTCCAATTGCTTGTGCA+AGG | + | chr4.4:19340514-19340533 | None:intergenic | 50.0% | |
| CGCTCTTAGGATGAGAGATG+GGG | - | chr4.4:19340556-19340575 | MS.gene35153:intron | 50.0% | |
| CTCTTAGGATGAGAGATGGG+GGG | - | chr4.4:19340558-19340577 | MS.gene35153:intron | 50.0% | |
| CTTCTTTGTGAATCTGGGGG+AGG | - | chr4.4:19339565-19339584 | MS.gene35153:intron | 50.0% | |
| CTTGGCTGCCAATTTCAGCA+GGG | - | chr4.4:19340264-19340283 | MS.gene35153:intron | 50.0% | |
| GAATATTTGGGAGGAGCGGT+AGG | - | chr4.4:19341038-19341057 | MS.gene35153:intron | 50.0% | |
| GACGCTCTTAGGATGAGAGA+TGG | - | chr4.4:19340554-19340573 | MS.gene35153:intron | 50.0% | |
| GCTCTTAGGATGAGAGATGG+GGG | - | chr4.4:19340557-19340576 | MS.gene35153:intron | 50.0% | |
| GCTCTTCTGCTGAAGAATCC+GGG | + | chr4.4:19339232-19339251 | None:intergenic | 50.0% | |
| GGGGCCATTTGTATTTGCTC+AGG | - | chr4.4:19340577-19340596 | MS.gene35153:intron | 50.0% | |
| GGTGTCCTCATGCTGCTATT+CGG | - | chr4.4:19339479-19339498 | MS.gene35153:intron | 50.0% | |
| GTGTCCTCATGCTGCTATTC+GGG | - | chr4.4:19339480-19339499 | MS.gene35153:intron | 50.0% | |
| TGCCAATTTCAGCAGGGAAC+TGG | - | chr4.4:19340270-19340289 | MS.gene35153:intron | 50.0% | |
| ! | AGATGGCTTGGATCGCTTGA+TGG | - | chr4.4:19340738-19340757 | MS.gene35153:intron | 50.0% |
| ! | ATTGGTGGACCTGTTGGTAC+TGG | - | chr4.4:19339301-19339320 | MS.gene35153:intron | 50.0% |
| ! | GCTTTCACTGTTGGCATTGG+TGG | - | chr4.4:19339286-19339305 | MS.gene35153:intron | 50.0% |
| !! | ATGGAGGGTACCGAACTTCA+GGG | - | chr4.4:19340757-19340776 | MS.gene35153:intron | 50.0% |
| !! | GGGAGAGTAGATTGGTTCGT+GGG | + | chr4.4:19339212-19339231 | None:intergenic | 50.0% |
| !! | TAGATTGGTTCGTGGGAGTG+TGG | + | chr4.4:19339205-19339224 | None:intergenic | 50.0% |
| AACTGTGCACGGCACTGCTA+TGG | + | chr4.4:19340946-19340965 | None:intergenic | 55.0% | |
| AGGGCAGCTGCTTAGCTGTT+TGG | + | chr4.4:19341279-19341298 | None:intergenic | 55.0% | |
| AGTCACGTAGCCAGCACGTA+AGG | - | chr4.4:19340696-19340715 | MS.gene35153:intron | 55.0% | |
| GGCTTGGATCGCTTGATGGA+GGG | - | chr4.4:19340742-19340761 | MS.gene35153:intron | 55.0% | |
| TCAACGGCGTTTCTTCCCTG+TGG | + | chr4.4:19342439-19342458 | None:intergenic | 55.0% | |
| TCCTCATGCTGCTATTCGGG+AGG | - | chr4.4:19339483-19339502 | MS.gene35153:intron | 55.0% | |
| TCCTCCCGAATAGCAGCATG+AGG | + | chr4.4:19339487-19339506 | None:intergenic | 55.0% | |
| TCGGACAACTCCTTACGTGC+TGG | + | chr4.4:19340709-19340728 | None:intergenic | 55.0% | |
| ! | GCGGTTTTGCCAGTACCAAC+AGG | + | chr4.4:19339313-19339332 | None:intergenic | 55.0% |
| ! | TGACTTGGGTGTCATGCAGC+GGG | - | chr4.4:19340532-19340551 | MS.gene35153:intron | 55.0% |
| ! | TGGCTTGGATCGCTTGATGG+AGG | - | chr4.4:19340741-19340760 | MS.gene35153:intron | 55.0% |
| !! | CGGGAGAGTAGATTGGTTCG+TGG | + | chr4.4:19339213-19339232 | None:intergenic | 55.0% |
| !! | CTGACTTGGGTGTCATGCAG+CGG | - | chr4.4:19340531-19340550 | MS.gene35153:intron | 55.0% |
| !! | GATGGAGGGTACCGAACTTC+AGG | - | chr4.4:19340756-19340775 | MS.gene35153:intron | 55.0% |
| !! | GTTGGCATTGGTGGACCTGT+TGG | - | chr4.4:19339295-19339314 | MS.gene35153:intron | 55.0% |
| !! | TGGAGGGTACCGAACTTCAG+GGG | - | chr4.4:19340758-19340777 | MS.gene35153:intron | 55.0% |
| AGGCATGGGAAGCAGCCACA+GGG | - | chr4.4:19342421-19342440 | MS.gene35153:CDS | 60.0% | |
| AGTGTGGTGCAAGACCGTCG+TGG | + | chr4.4:19339189-19339208 | None:intergenic | 60.0% | |
| CACGACCACGACCACAAGCA+TGG | - | chr4.4:19339124-19339143 | MS.gene35153:CDS | 60.0% | |
| CATGCTTGTGGTCGTGGTCG+TGG | + | chr4.4:19339126-19339145 | None:intergenic | 60.0% | |
| GTGCAAGACCGTCGTGGCTA+TGG | + | chr4.4:19339183-19339202 | None:intergenic | 60.0% | |
| TCATGCAGCGGGACGCTCTT+AGG | - | chr4.4:19340543-19340562 | MS.gene35153:intron | 60.0% | |
| TGTGGTCGTGGTCGTGGTCA+TGG | + | chr4.4:19339120-19339139 | None:intergenic | 60.0% | |
| CAGGCATGGGAAGCAGCCAC+AGG | - | chr4.4:19342420-19342439 | MS.gene35153:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19339061 | 19342458 | 19339061 | ID=MS.gene35153 |
| chr4.4 | mRNA | 19339061 | 19342458 | 19339061 | ID=MS.gene35153.t1;Parent=MS.gene35153 |
| chr4.4 | exon | 19341933 | 19342458 | 19341933 | ID=MS.gene35153.t1.exon1;Parent=MS.gene35153.t1 |
| chr4.4 | CDS | 19341933 | 19342458 | 19341933 | ID=cds.MS.gene35153.t1;Parent=MS.gene35153.t1 |
| chr4.4 | exon | 19341138 | 19341259 | 19341138 | ID=MS.gene35153.t1.exon2;Parent=MS.gene35153.t1 |
| chr4.4 | CDS | 19341138 | 19341259 | 19341138 | ID=cds.MS.gene35153.t1;Parent=MS.gene35153.t1 |
| chr4.4 | exon | 19340921 | 19341025 | 19340921 | ID=MS.gene35153.t1.exon3;Parent=MS.gene35153.t1 |
| chr4.4 | CDS | 19340921 | 19341025 | 19340921 | ID=cds.MS.gene35153.t1;Parent=MS.gene35153.t1 |
| chr4.4 | exon | 19339061 | 19339144 | 19339061 | ID=MS.gene35153.t1.exon4;Parent=MS.gene35153.t1 |
| chr4.4 | CDS | 19339061 | 19339144 | 19339061 | ID=cds.MS.gene35153.t1;Parent=MS.gene35153.t1 |
| Gene Sequence |
| Protein sequence |
