Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35372.t1 | XP_013464918.1 | 95.5 | 686 | 31 | 0 | 1 | 686 | 1 | 686 | 0.00E+00 | 1216.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35372.t1 | Q3E7D0 | 71.0 | 711 | 175 | 7 | 2 | 686 | 4 | 709 | 7.8e-267 | 921.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35372.t1 | A0A072VC14 | 95.5 | 686 | 31 | 0 | 1 | 686 | 1 | 686 | 0.0e+00 | 1216.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene35372 | MS.gene008938 | PPI |
MS.gene35372 | MS.gene065219 | PPI |
MS.gene35372 | MS.gene027793 | PPI |
MS.gene35372 | MS.gene069113 | PPI |
MS.gene35372 | MS.gene070688 | PPI |
MS.gene046435 | MS.gene35372 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35372.t1 | MTR_2g084895 | 98.542 | 686 | 10 | 0 | 1 | 686 | 1 | 686 | 0.0 | 1365 |
MS.gene35372.t1 | MTR_4g055290 | 78.531 | 708 | 110 | 10 | 1 | 686 | 1 | 688 | 0.0 | 1043 |
MS.gene35372.t1 | MTR_2g103510 | 67.922 | 664 | 140 | 9 | 28 | 686 | 4 | 599 | 0.0 | 842 |
MS.gene35372.t1 | MTR_8g068550 | 58.272 | 544 | 225 | 1 | 143 | 686 | 222 | 763 | 0.0 | 687 |
MS.gene35372.t1 | MTR_5g032020 | 48.511 | 705 | 304 | 7 | 23 | 686 | 19 | 705 | 0.0 | 649 |
MS.gene35372.t1 | MTR_8g086520 | 36.567 | 536 | 302 | 5 | 147 | 678 | 20 | 521 | 2.01e-117 | 362 |
MS.gene35372.t1 | MTR_3g080390 | 38.175 | 537 | 293 | 6 | 147 | 678 | 15 | 517 | 2.79e-116 | 359 |
MS.gene35372.t1 | MTR_2g016460 | 35.075 | 536 | 310 | 5 | 147 | 678 | 20 | 521 | 2.99e-108 | 338 |
MS.gene35372.t1 | MTR_8g086520 | 36.709 | 474 | 264 | 5 | 147 | 618 | 20 | 459 | 6.39e-103 | 322 |
MS.gene35372.t1 | MTR_8g063220 | 34.549 | 521 | 301 | 5 | 164 | 678 | 44 | 530 | 1.03e-100 | 319 |
MS.gene35372.t1 | MTR_1g021120 | 34.953 | 535 | 306 | 9 | 146 | 674 | 42 | 540 | 1.09e-99 | 317 |
MS.gene35372.t1 | MTR_4g106750 | 34.549 | 521 | 301 | 5 | 164 | 678 | 43 | 529 | 1.55e-99 | 316 |
MS.gene35372.t1 | MTR_3g078270 | 34.799 | 523 | 297 | 6 | 164 | 678 | 43 | 529 | 1.96e-98 | 313 |
MS.gene35372.t1 | MTR_3g103230 | 33.589 | 521 | 303 | 6 | 164 | 678 | 68 | 551 | 1.34e-96 | 308 |
MS.gene35372.t1 | MTR_4g106750 | 34.241 | 514 | 298 | 5 | 171 | 678 | 1 | 480 | 1.40e-95 | 304 |
MS.gene35372.t1 | MTR_5g035180 | 32.759 | 522 | 310 | 5 | 164 | 678 | 48 | 535 | 1.02e-94 | 303 |
MS.gene35372.t1 | MTR_8g086520 | 37.093 | 399 | 231 | 3 | 147 | 543 | 20 | 400 | 1.99e-88 | 282 |
MS.gene35372.t1 | MTR_8g086520 | 36.406 | 434 | 240 | 5 | 247 | 678 | 6 | 405 | 7.77e-88 | 281 |
MS.gene35372.t1 | MTR_1g106085 | 32.276 | 536 | 317 | 9 | 151 | 678 | 27 | 524 | 2.50e-86 | 281 |
MS.gene35372.t1 | MTR_5g022110 | 31.794 | 563 | 335 | 8 | 122 | 678 | 25 | 544 | 2.60e-85 | 279 |
MS.gene35372.t1 | MTR_4g106750 | 32.170 | 401 | 234 | 4 | 282 | 678 | 11 | 377 | 2.51e-63 | 215 |
MS.gene35372.t1 | MTR_8g086535 | 37.374 | 99 | 62 | 0 | 445 | 543 | 18 | 116 | 8.20e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35372.t1 | AT2G27810 | 73.266 | 692 | 157 | 7 | 21 | 686 | 20 | 709 | 0.0 | 980 |
MS.gene35372.t1 | AT2G27810 | 70.810 | 716 | 157 | 8 | 21 | 686 | 20 | 733 | 0.0 | 968 |
MS.gene35372.t1 | AT2G27810 | 72.028 | 572 | 132 | 7 | 21 | 566 | 20 | 589 | 0.0 | 773 |
MS.gene35372.t1 | AT2G27810 | 70.476 | 525 | 127 | 7 | 21 | 519 | 20 | 542 | 0.0 | 688 |
MS.gene35372.t1 | AT4G38050 | 49.708 | 684 | 306 | 8 | 15 | 678 | 39 | 704 | 0.0 | 639 |
MS.gene35372.t1 | AT2G34190 | 35.838 | 519 | 295 | 5 | 164 | 678 | 37 | 521 | 2.47e-112 | 348 |
MS.gene35372.t1 | AT2G05760 | 37.477 | 539 | 298 | 7 | 145 | 678 | 13 | 517 | 3.58e-112 | 348 |
MS.gene35372.t1 | AT1G60030 | 36.660 | 521 | 290 | 5 | 164 | 678 | 49 | 535 | 1.48e-106 | 334 |
MS.gene35372.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 164 | 678 | 43 | 529 | 8.93e-102 | 322 |
MS.gene35372.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 164 | 678 | 43 | 529 | 8.93e-102 | 322 |
MS.gene35372.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 164 | 678 | 43 | 529 | 8.93e-102 | 322 |
MS.gene35372.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 164 | 678 | 39 | 525 | 1.91e-100 | 318 |
MS.gene35372.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 164 | 678 | 39 | 525 | 1.91e-100 | 318 |
MS.gene35372.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 164 | 678 | 39 | 525 | 1.91e-100 | 318 |
MS.gene35372.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 164 | 678 | 39 | 525 | 1.91e-100 | 318 |
MS.gene35372.t1 | AT5G62890 | 38.955 | 421 | 237 | 3 | 164 | 582 | 43 | 445 | 9.88e-96 | 304 |
MS.gene35372.t1 | AT2G26510 | 35.240 | 542 | 302 | 9 | 146 | 677 | 43 | 545 | 7.67e-95 | 304 |
MS.gene35372.t1 | AT1G49960 | 35.755 | 523 | 296 | 6 | 162 | 678 | 35 | 523 | 9.09e-95 | 303 |
MS.gene35372.t1 | AT1G10540 | 32.955 | 528 | 303 | 8 | 164 | 678 | 47 | 536 | 7.30e-94 | 301 |
MS.gene35372.t1 | AT1G65550 | 32.358 | 547 | 317 | 7 | 147 | 678 | 30 | 538 | 6.30e-91 | 293 |
MS.gene35372.t1 | AT1G10540 | 34.890 | 364 | 206 | 6 | 164 | 518 | 47 | 388 | 1.59e-68 | 229 |
MS.gene35372.t1 | AT2G26510 | 36.316 | 380 | 212 | 6 | 146 | 518 | 43 | 399 | 4.95e-67 | 226 |
MS.gene35372.t1 | AT2G26510 | 36.785 | 367 | 202 | 6 | 146 | 505 | 43 | 386 | 1.41e-65 | 223 |
MS.gene35372.t1 | AT5G25420 | 29.773 | 440 | 217 | 8 | 147 | 582 | 42 | 393 | 1.32e-53 | 190 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATTATGTTTCTATATT+AGG | 0.169100 | 2.1:+16477072 | MS.gene35372:CDS |
ATGAGGATGGGTTTGCTTTA+AGG | 0.185976 | 2.1:+16476736 | MS.gene35372:CDS |
TACAATTGCTGTGACTAAAA+TGG | 0.195962 | 2.1:+16481280 | MS.gene35372:CDS |
GGCACTGACAAGTTGGAATT+TGG | 0.213465 | 2.1:-16483791 | None:intergenic |
ACCTGATTTGCAGGTTCCTT+TGG | 0.236656 | 2.1:+16480084 | MS.gene35372:intron |
TGTTTATCTGGCTCCAGTTT+TGG | 0.253065 | 2.1:+16477377 | MS.gene35372:CDS |
GGTCTCTGGGGTACTGGAAC+TGG | 0.268292 | 2.1:+16481230 | MS.gene35372:CDS |
GGGTTCATTGCTTCAATTCC+TGG | 0.274645 | 2.1:+16483599 | MS.gene35372:CDS |
GGAAGGTCTTTCTAGTGTTT+TGG | 0.275832 | 2.1:+16481205 | MS.gene35372:CDS |
TCTCGCAATATCATAATAAT+TGG | 0.281920 | 2.1:+16483710 | MS.gene35372:CDS |
CTTCGTAAGATATCTGTTCT+TGG | 0.293844 | 2.1:+16479930 | MS.gene35372:CDS |
GAGACCAATGCCGGTGATTC+TGG | 0.294315 | 2.1:+16476456 | MS.gene35372:CDS |
TTGGCTGGTCTCTGGGGTAC+TGG | 0.299524 | 2.1:+16481224 | MS.gene35372:CDS |
CTAAGAGATTCACCTGGTTT+AGG | 0.302106 | 2.1:+16476780 | MS.gene35372:CDS |
CCCGCATACTTTCAACAATA+TGG | 0.308753 | 2.1:+16483761 | MS.gene35372:CDS |
GGGCTAAGAAAACCGGTTTC+AGG | 0.311969 | 2.1:+16476418 | MS.gene35372:CDS |
TTGGTCTCGCCGGAGAATTT+TGG | 0.313765 | 2.1:-16476441 | None:intergenic |
CATTGGCAACCCATAGTCTT+TGG | 0.316812 | 2.1:-16484892 | None:intergenic |
TACCGAACGTTGGCGAGGTT+CGG | 0.317187 | 2.1:-16476340 | None:intergenic |
CCTGATTTGCAGGTTCCTTT+GGG | 0.322059 | 2.1:+16480085 | MS.gene35372:intron |
AAACATACCTGCCTCAAATA+TGG | 0.329584 | 2.1:+16480180 | MS.gene35372:CDS |
TCCTGTCTTCCACTGGAAAA+TGG | 0.332720 | 2.1:+16480318 | MS.gene35372:CDS |
TAAACTCATACCTTACTAAC+AGG | 0.333726 | 2.1:-16478178 | None:intergenic |
ATTCCTGGAGTCATGGTTGC+TGG | 0.335456 | 2.1:+16483614 | MS.gene35372:CDS |
GGGCCTTTCCAAAGCAAATA+TGG | 0.336173 | 2.1:+16483848 | MS.gene35372:CDS |
CCTGCTATTGCCAAAGACTA+TGG | 0.347150 | 2.1:+16484882 | MS.gene35372:CDS |
CTCAATCTCATCCGTGGATT+CGG | 0.353892 | 2.1:+16480363 | MS.gene35372:CDS |
AACCAGTTCCACCTTCTTCA+TGG | 0.355404 | 2.1:+16476397 | MS.gene35372:CDS |
ACCGAACGTTGGCGAGGTTC+GGG | 0.358868 | 2.1:-16476339 | None:intergenic |
TTTGCAGGTTCCTTTGGGTT+TGG | 0.367091 | 2.1:+16480090 | MS.gene35372:intron |
TCAACTGCGCTCTTCGTGTC+TGG | 0.372892 | 2.1:+16477291 | MS.gene35372:CDS |
CTTTGGGTTTGGCAATTACA+TGG | 0.373887 | 2.1:+16480101 | MS.gene35372:CDS |
TCAGTTCCCATTGGTGTGTA+TGG | 0.374735 | 2.1:+16477045 | MS.gene35372:intron |
ACACGACCTGCTTCGAGATC+GGG | 0.377975 | 2.1:-16476525 | None:intergenic |
ACTTGTCATTGTTCCTGCTA+TGG | 0.384370 | 2.1:+16477113 | MS.gene35372:CDS |
CTGGTCTCCTCTGCTTTATG+TGG | 0.387107 | 2.1:+16483633 | MS.gene35372:CDS |
GTCACAACCTTTGTAGTTGT+AGG | 0.394524 | 2.1:-16480155 | None:intergenic |
GCTTTCTTGCTGACCGAAGC+TGG | 0.394590 | 2.1:+16480130 | MS.gene35372:CDS |
CGAGGTTCGGGTTCGGACAT+TGG | 0.396581 | 2.1:-16476327 | None:intergenic |
GTCCAACTGCAGCAATGGTT+GGG | 0.397694 | 2.1:-16479726 | None:intergenic |
ATACCCCTCCATATTTGCTT+TGG | 0.399659 | 2.1:-16483856 | None:intergenic |
CTTGTCATTGTTCCTGCTAT+GGG | 0.400087 | 2.1:+16477114 | MS.gene35372:CDS |
GGGGTTCTTAGTCGCGGAAT+TGG | 0.401025 | 2.1:+16481179 | MS.gene35372:CDS |
TCTTAGTCGCGGAATTGGTC+TGG | 0.401963 | 2.1:+16481184 | MS.gene35372:CDS |
ACAATTGCTGTGACTAAAAT+GGG | 0.412964 | 2.1:+16481281 | MS.gene35372:CDS |
ATTTCCCTATCCATTGCAAT+GGG | 0.414720 | 2.1:+16480291 | MS.gene35372:CDS |
TTCACTGCAGGCGGTGGAAG+CGG | 0.419366 | 2.1:-16476597 | None:intergenic |
AAGCCGCAGAGCAGTTCAAT+TGG | 0.419441 | 2.1:+16481304 | MS.gene35372:CDS |
GCAGCGAAAATATCGTGTTT+AGG | 0.420690 | 2.1:-16484749 | None:intergenic |
TGGGCAATGCTTACAGCATT+GGG | 0.434766 | 2.1:+16483653 | MS.gene35372:CDS |
GCCCATGAAGAAGGTGGAAC+TGG | 0.436537 | 2.1:-16476399 | None:intergenic |
TCAGCTTCTCTAGACTTAAC+CGG | 0.436599 | 2.1:-16476495 | None:intergenic |
AAAATCCGACCAACTCTCAT+TGG | 0.436965 | 2.1:-16484909 | None:intergenic |
GGTGGAACTGGTTTAGCTTC+CGG | 0.436991 | 2.1:-16476387 | None:intergenic |
GCATCTAGACCTCCAACTCC+TGG | 0.438157 | 2.1:+16481158 | MS.gene35372:CDS |
TCTCTCCCTTTCTTCACTGC+AGG | 0.440249 | 2.1:-16476609 | None:intergenic |
ACCTGCTTCGAGATCGGGAT+TGG | 0.448060 | 2.1:-16476520 | None:intergenic |
GTGGGCAATGCTTACAGCAT+TGG | 0.448946 | 2.1:+16483652 | MS.gene35372:CDS |
CCTTTCTTCACTGCAGGCGG+TGG | 0.449083 | 2.1:-16476603 | None:intergenic |
GAGTTGATGATTGCCAAAAC+TGG | 0.449602 | 2.1:-16477390 | None:intergenic |
AACACGACCTGCTTCGAGAT+CGG | 0.450640 | 2.1:-16476526 | None:intergenic |
TCCAGGTTGCCCTTGATACA+AGG | 0.452484 | 2.1:+16477345 | MS.gene35372:CDS |
TGCTTCAATTCCTGGAGTCA+TGG | 0.456853 | 2.1:+16483607 | MS.gene35372:CDS |
TTCATTCAGTCCTTGAAACT+CGG | 0.458195 | 2.1:-16477415 | None:intergenic |
GAATTATGTCCCTGTTAGTA+AGG | 0.461216 | 2.1:+16478168 | MS.gene35372:CDS |
CCGTGAGAAGCCACAATGTA+AGG | 0.461940 | 2.1:-16483827 | None:intergenic |
ACGTTGGCGAGGTTCGGGTT+CGG | 0.462008 | 2.1:-16476334 | None:intergenic |
TCTTCATGGGCTAAGAAAAC+CGG | 0.464598 | 2.1:+16476411 | MS.gene35372:CDS |
ATCAACTCACCCGAGTTTCA+AGG | 0.466883 | 2.1:+16477405 | MS.gene35372:CDS |
TCTCGAAGCAGGTCGTGTTA+AGG | 0.467673 | 2.1:+16476530 | MS.gene35372:CDS |
ACCCGAACCTCGCCAACGTT+CGG | 0.469036 | 2.1:+16476338 | MS.gene35372:CDS |
AGCCTCACTATAGCGTAGAT+TGG | 0.473513 | 2.1:-16483681 | None:intergenic |
ATGGTTGTTTCAGTTCCCAT+TGG | 0.474254 | 2.1:+16477036 | MS.gene35372:intron |
CCCTTGTATCAAGGGCAACC+TGG | 0.474719 | 2.1:-16477346 | None:intergenic |
CGACTAAGAACCCCAGGAGT+TGG | 0.475770 | 2.1:-16481170 | None:intergenic |
CCACCGCCTGCAGTGAAGAA+AGG | 0.475961 | 2.1:+16476603 | MS.gene35372:CDS |
CCGTTTGCTACCGGCGGAGG+AGG | 0.477161 | 2.1:-16476558 | None:intergenic |
AAAAGAAGACCCTTGTATCA+AGG | 0.477284 | 2.1:-16477355 | None:intergenic |
GGCTCTCTTCTAGCAACATC+AGG | 0.478148 | 2.1:-16484861 | None:intergenic |
CCTTACATTGTGGCTTCTCA+CGG | 0.479790 | 2.1:+16483827 | MS.gene35372:CDS |
TTCAGATGGGTGAAGTGGGT+TGG | 0.479937 | 2.1:+16484930 | MS.gene35372:CDS |
TCGCCGTTTGCTACCGGCGG+AGG | 0.481851 | 2.1:-16476561 | None:intergenic |
ACTGCAGAAAGCACATTTCA+AGG | 0.482048 | 2.1:+16480212 | MS.gene35372:CDS |
ACATATAATGAAGGAGCTGC+AGG | 0.483798 | 2.1:+16478097 | MS.gene35372:CDS |
CCATAGTCTTTGGCAATAGC+AGG | 0.484927 | 2.1:-16484882 | None:intergenic |
TGGTGCAATACAAATATTAG+TGG | 0.485741 | 2.1:+16479798 | MS.gene35372:CDS |
ACTATATTAACAGGGAAGGT+TGG | 0.496292 | 2.1:+16483575 | MS.gene35372:intron |
CACCGCCTGCAGTGAAGAAA+GGG | 0.496638 | 2.1:+16476604 | MS.gene35372:CDS |
TTGTTGAAAGTATGCGGGTA+TGG | 0.498329 | 2.1:-16483756 | None:intergenic |
GTAGTTGTAGGCTCCAGCTT+CGG | 0.499373 | 2.1:-16480143 | None:intergenic |
TGAATACCATACACACCAAT+GGG | 0.503312 | 2.1:-16477051 | None:intergenic |
TCTGATAGTGTTATCTCTCG+TGG | 0.504058 | 2.1:+16481337 | MS.gene35372:CDS |
TACAGTATTATCCAAGATAA+CGG | 0.505137 | 2.1:-16484796 | None:intergenic |
CGAATCCACGGATGAGATTG+AGG | 0.505227 | 2.1:-16480362 | None:intergenic |
GCCAATCCCGATCTCGAAGC+AGG | 0.506582 | 2.1:+16476519 | MS.gene35372:CDS |
AGCCGCAGAGCAGTTCAATT+GGG | 0.506746 | 2.1:+16481305 | MS.gene35372:CDS |
GCGAGGAATGAAGAAGTTGC+TGG | 0.508573 | 2.1:+16476693 | MS.gene35372:CDS |
AGTCCAACTGCAGCAATGGT+TGG | 0.508809 | 2.1:-16479727 | None:intergenic |
CCGCAGACTGTGGATGAGGA+TGG | 0.510661 | 2.1:+16476723 | MS.gene35372:CDS |
TCCCCAACCATTGCTGCAGT+TGG | 0.510791 | 2.1:+16479724 | MS.gene35372:CDS |
TCATTCAGTCCTTGAAACTC+GGG | 0.513438 | 2.1:-16477414 | None:intergenic |
AATTTCCCTATCCATTGCAA+TGG | 0.514239 | 2.1:+16480290 | MS.gene35372:CDS |
CAAACTTTCCTTGGATACAC+TGG | 0.514705 | 2.1:+16478146 | MS.gene35372:CDS |
AATCTACGCTATAGTGAGGC+TGG | 0.514725 | 2.1:+16483683 | MS.gene35372:CDS |
ATAACTTGGCACTGACAAGT+TGG | 0.515363 | 2.1:-16483798 | None:intergenic |
AAGAACGCGGAGTATACGTT+TGG | 0.515456 | 2.1:+16484832 | MS.gene35372:CDS |
CATCTAGACCTCCAACTCCT+GGG | 0.515747 | 2.1:+16481159 | MS.gene35372:CDS |
CCTCCATATTTGCTTTGGAA+AGG | 0.519150 | 2.1:-16483851 | None:intergenic |
GTGCTCAGAAACCATATTTG+AGG | 0.520839 | 2.1:-16480191 | None:intergenic |
ACCAGTTCCACCTTCTTCAT+GGG | 0.521722 | 2.1:+16476398 | MS.gene35372:CDS |
CTAAGAACCCCAGGAGTTGG+AGG | 0.523552 | 2.1:-16481167 | None:intergenic |
CTGACCAGAATCACCGGCAT+TGG | 0.526147 | 2.1:-16476460 | None:intergenic |
GGGGTACTCCTGTCTTCCAC+TGG | 0.527439 | 2.1:+16480311 | MS.gene35372:CDS |
GTTGGCACATGTATCGAGAT+TGG | 0.528428 | 2.1:+16479778 | MS.gene35372:CDS |
CTCAACCTTCACCTGACCAT+TGG | 0.528859 | 2.1:-16476652 | None:intergenic |
CCGCGTTCTTGCTTACTGCC+AGG | 0.530307 | 2.1:-16484819 | None:intergenic |
TCCAACTGCAGCAATGGTTG+GGG | 0.530330 | 2.1:-16479725 | None:intergenic |
TTCCTCGCCGTTCTCCTCAC+CGG | 0.531151 | 2.1:-16476678 | None:intergenic |
CTCCCTTTCTTCACTGCAGG+CGG | 0.531498 | 2.1:-16476606 | None:intergenic |
TCAGGTGAAGGTTGAGCAGC+CGG | 0.534755 | 2.1:+16476659 | MS.gene35372:CDS |
CCTCCTCCGCCGGTAGCAAA+CGG | 0.539693 | 2.1:+16476558 | MS.gene35372:CDS |
ATATTAACAGGGAAGGTTGG+AGG | 0.541804 | 2.1:+16483578 | MS.gene35372:intron |
CTGATAGTGTTATCTCTCGT+GGG | 0.542089 | 2.1:+16481338 | MS.gene35372:CDS |
GATAGGGAAATTTAAACCAT+GGG | 0.542839 | 2.1:-16480279 | None:intergenic |
CTGCTATTGCCAAAGACTAT+GGG | 0.543700 | 2.1:+16484883 | MS.gene35372:CDS |
GTCATTGTTCCTGCTATGGG+AGG | 0.544012 | 2.1:+16477117 | MS.gene35372:CDS |
TTCACCTGACCATTGGTACT+CGG | 0.545845 | 2.1:-16476645 | None:intergenic |
TGGTCTCCTCTGCTTTATGT+GGG | 0.546533 | 2.1:+16483634 | MS.gene35372:CDS |
ACATGAGATCCTCCCATAGC+AGG | 0.549471 | 2.1:-16477126 | None:intergenic |
GGTTTCAGGCCAAAATTCTC+CGG | 0.549553 | 2.1:+16476432 | MS.gene35372:CDS |
CGCAGACTGTGGATGAGGAT+GGG | 0.552092 | 2.1:+16476724 | MS.gene35372:CDS |
AAAGAAGACCCTTGTATCAA+GGG | 0.554159 | 2.1:-16477354 | None:intergenic |
GGATAGGGAAATTTAAACCA+TGG | 0.554977 | 2.1:-16480280 | None:intergenic |
TGAGCAGCCGGTGAGGAGAA+CGG | 0.556833 | 2.1:+16476671 | MS.gene35372:CDS |
TGAAAGTCCAACTGCAGCAA+TGG | 0.557943 | 2.1:-16479731 | None:intergenic |
CATATAATGAAGGAGCTGCA+GGG | 0.557990 | 2.1:+16478098 | MS.gene35372:CDS |
AGACCAGCAACCATGACTCC+AGG | 0.558088 | 2.1:-16483617 | None:intergenic |
CTCGCCAACGTTCGGTACAA+TGG | 0.559635 | 2.1:+16476346 | MS.gene35372:CDS |
GAAATTCCGACATATAATGA+AGG | 0.561093 | 2.1:+16478088 | MS.gene35372:intron |
AGTTCCGAGTACCAATGGTC+AGG | 0.561177 | 2.1:+16476641 | MS.gene35372:CDS |
ACATAATTCCAGTGTATCCA+AGG | 0.561306 | 2.1:-16478154 | None:intergenic |
TATTAACAGGGAAGGTTGGA+GGG | 0.561391 | 2.1:+16483579 | MS.gene35372:intron |
ACTGCAGGCGGTGGAAGCGG+TGG | 0.561871 | 2.1:-16476594 | None:intergenic |
GTTGCCGCAGACTGTGGATG+AGG | 0.562028 | 2.1:+16476719 | MS.gene35372:CDS |
GTACCCCATTGCAATGGATA+GGG | 0.562246 | 2.1:-16480295 | None:intergenic |
TCTAGACTTAACCGGCGGTA+AGG | 0.562449 | 2.1:-16476487 | None:intergenic |
TTATTGTCTTTACCTAAACC+AGG | 0.567090 | 2.1:-16476792 | None:intergenic |
TTCTCCGGCGAGACCAATGC+CGG | 0.567124 | 2.1:+16476447 | MS.gene35372:CDS |
TAAGGCAACTCCTCCTCCGC+CGG | 0.568301 | 2.1:+16476548 | MS.gene35372:CDS |
TTTGGGTTTGGCAATTACAT+GGG | 0.568714 | 2.1:+16480102 | MS.gene35372:CDS |
CTGAATACCATACACACCAA+TGG | 0.569880 | 2.1:-16477052 | None:intergenic |
CCATATTGTTGAAAGTATGC+GGG | 0.570367 | 2.1:-16483761 | None:intergenic |
TTCTCGCCGTTTGCTACCGG+CGG | 0.571248 | 2.1:-16476564 | None:intergenic |
ATGTAAGGTTGAAAATAACT+TGG | 0.572063 | 2.1:-16483812 | None:intergenic |
CTTACATTGTGGCTTCTCAC+GGG | 0.574029 | 2.1:+16483828 | MS.gene35372:CDS |
GGTTTCCTCAATCTCATCCG+TGG | 0.575095 | 2.1:+16480357 | MS.gene35372:CDS |
ATCACCGGCATTGGTCTCGC+CGG | 0.575281 | 2.1:-16476451 | None:intergenic |
TTCTTAGCCCATGAAGAAGG+TGG | 0.575288 | 2.1:-16476405 | None:intergenic |
AGTACCCCATTGCAATGGAT+AGG | 0.575630 | 2.1:-16480296 | None:intergenic |
GCCATATTGTTGAAAGTATG+CGG | 0.580122 | 2.1:-16483762 | None:intergenic |
TGGTCAGATAACCTTACCGC+CGG | 0.582962 | 2.1:+16476476 | MS.gene35372:CDS |
TCAGAAACCATATTTGAGGC+AGG | 0.584266 | 2.1:-16480187 | None:intergenic |
ATAGGAGGAAATTGCTGCAG+TGG | 0.584474 | 2.1:+16477266 | MS.gene35372:intron |
TTTCAGGTTTATCAATCCTG+TGG | 0.587332 | 2.1:+16479696 | MS.gene35372:intron |
AAGAAAGGGAGAGACTCCGA+TGG | 0.590298 | 2.1:+16476618 | MS.gene35372:CDS |
CCAGGTTGCCCTTGATACAA+GGG | 0.591004 | 2.1:+16477346 | MS.gene35372:CDS |
GATGGAGTTCCGAGTACCAA+TGG | 0.591787 | 2.1:+16476636 | MS.gene35372:CDS |
TCGATACATGTGCCAACAAG+AGG | 0.592425 | 2.1:-16479772 | None:intergenic |
ATTGGTACTCGGAACTCCAT+CGG | 0.593106 | 2.1:-16476634 | None:intergenic |
ATATAATGAAGGAGCTGCAG+GGG | 0.596382 | 2.1:+16478099 | MS.gene35372:CDS |
GGTTATCTGACCAGAATCAC+CGG | 0.597229 | 2.1:-16476466 | None:intergenic |
TGAAGGTTGAGCAGCCGGTG+AGG | 0.598381 | 2.1:+16476664 | MS.gene35372:CDS |
ATCTTGGATAATACTGTACC+TGG | 0.600671 | 2.1:+16484801 | MS.gene35372:CDS |
AGTCGCGGAATTGGTCTGGA+AGG | 0.601125 | 2.1:+16481188 | MS.gene35372:CDS |
ACAGGAGTACCCCATTGCAA+TGG | 0.605642 | 2.1:-16480301 | None:intergenic |
CATGTAATTGCCAAACCCAA+AGG | 0.608401 | 2.1:-16480100 | None:intergenic |
TGGTTCGTTGCCGCAGACTG+TGG | 0.608510 | 2.1:+16476713 | MS.gene35372:CDS |
ACGTTCGGTACAATGGTCAC+CGG | 0.609281 | 2.1:+16476353 | MS.gene35372:CDS |
TATGGGTTGCCAATGAGAGT+TGG | 0.609953 | 2.1:+16484900 | MS.gene35372:CDS |
CTTTCCAAAGCAAATATGGA+GGG | 0.614764 | 2.1:+16483852 | MS.gene35372:CDS |
CAGGAATCTAACCGAATCCA+CGG | 0.616676 | 2.1:-16480374 | None:intergenic |
ACTCCTGGGGTTCTTAGTCG+CGG | 0.620983 | 2.1:+16481173 | MS.gene35372:CDS |
GAGTACCAATGGTCAGGTGA+AGG | 0.622716 | 2.1:+16476647 | MS.gene35372:CDS |
GCAGCTCCTTCATTATATGT+CGG | 0.622848 | 2.1:-16478094 | None:intergenic |
AACTGGTTTAGCTTCCGGCG+TGG | 0.626580 | 2.1:-16476382 | None:intergenic |
ATGGTTGGGGATACAACCAC+AGG | 0.628708 | 2.1:-16479712 | None:intergenic |
ATTCCGCGACTAAGAACCCC+AGG | 0.628826 | 2.1:-16481176 | None:intergenic |
GGTTGCCAATGAGAGTTGGT+CGG | 0.630838 | 2.1:+16484904 | MS.gene35372:CDS |
CCATCCTCATCCACAGTCTG+CGG | 0.635353 | 2.1:-16476723 | None:intergenic |
ATGCAATCAAATCATCCCCA+TGG | 0.635438 | 2.1:+16480263 | MS.gene35372:CDS |
CATTGTACCGAACGTTGGCG+AGG | 0.638058 | 2.1:-16476345 | None:intergenic |
CCTTTCCAAAGCAAATATGG+AGG | 0.641808 | 2.1:+16483851 | MS.gene35372:CDS |
GCTTCCGGCGTGGATAACGC+CGG | 0.647288 | 2.1:-16476372 | None:intergenic |
CTGCATATATTAGAAATATG+CGG | 0.650229 | 2.1:-16479956 | None:intergenic |
ATAGCAGGAACAATGACAAG+TGG | 0.651348 | 2.1:-16477111 | None:intergenic |
ATCTAGACCTCCAACTCCTG+GGG | 0.653295 | 2.1:+16481160 | MS.gene35372:CDS |
TTTCCAAAGCAAATATGGAG+GGG | 0.656358 | 2.1:+16483853 | MS.gene35372:CDS |
ACGCGGAGTATACGTTTGGT+CGG | 0.659264 | 2.1:+16484836 | MS.gene35372:CDS |
GTGACCATTGTACCGAACGT+TGG | 0.661147 | 2.1:-16476350 | None:intergenic |
AATGGCTCTTGTGATGTGCG+TGG | 0.663958 | 2.1:+16480336 | MS.gene35372:CDS |
GCTGGAGCCTACAACTACAA+AGG | 0.665279 | 2.1:+16480148 | MS.gene35372:CDS |
GTCCAATCTACGCTATAGTG+AGG | 0.677718 | 2.1:+16483679 | MS.gene35372:CDS |
AAACTCATACCTTACTAACA+GGG | 0.679251 | 2.1:-16478177 | None:intergenic |
GTCACCGGCGTTATCCACGC+CGG | 0.684583 | 2.1:+16476368 | MS.gene35372:CDS |
GCATTGCCCACATAAAGCAG+AGG | 0.690220 | 2.1:-16483640 | None:intergenic |
TATAATGAAGGAGCTGCAGG+GGG | 0.691532 | 2.1:+16478100 | MS.gene35372:CDS |
CCTGGCAGTAAGCAAGAACG+CGG | 0.691600 | 2.1:+16484819 | MS.gene35372:CDS |
AGCCGGTGAGGAGAACGGCG+AGG | 0.711202 | 2.1:+16476676 | MS.gene35372:CDS |
GCTTCTCTAGACTTAACCGG+CGG | 0.711836 | 2.1:-16476492 | None:intergenic |
TATGAACTAAGAGATTCACC+TGG | 0.712831 | 2.1:+16476774 | MS.gene35372:CDS |
ATAGGGAAATTTAAACCATG+GGG | 0.713448 | 2.1:-16480278 | None:intergenic |
TTTCCCTATCCATTGCAATG+GGG | 0.717290 | 2.1:+16480292 | MS.gene35372:CDS |
CACCCAATTGAACTGCTCTG+CGG | 0.718427 | 2.1:-16481307 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 16476330 | 16484959 | 16476330 | ID=MS.gene35372 |
chr2.1 | mRNA | 16476330 | 16484959 | 16476330 | ID=MS.gene35372.t1;Parent=MS.gene35372 |
chr2.1 | exon | 16476330 | 16476801 | 16476330 | ID=MS.gene35372.t1.exon1;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16476330 | 16476801 | 16476330 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16477049 | 16477146 | 16477049 | ID=MS.gene35372.t1.exon2;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16477049 | 16477146 | 16477049 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16477270 | 16477440 | 16477270 | ID=MS.gene35372.t1.exon3;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16477270 | 16477440 | 16477270 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16478089 | 16478189 | 16478089 | ID=MS.gene35372.t1.exon4;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16478089 | 16478189 | 16478089 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16479702 | 16479837 | 16479702 | ID=MS.gene35372.t1.exon5;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16479702 | 16479837 | 16479702 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16479927 | 16479977 | 16479927 | ID=MS.gene35372.t1.exon6;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16479927 | 16479977 | 16479927 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16480097 | 16480384 | 16480097 | ID=MS.gene35372.t1.exon7;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16480097 | 16480384 | 16480097 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16481125 | 16481359 | 16481125 | ID=MS.gene35372.t1.exon8;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16481125 | 16481359 | 16481125 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16483588 | 16483874 | 16483588 | ID=MS.gene35372.t1.exon9;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16483588 | 16483874 | 16483588 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
chr2.1 | exon | 16484738 | 16484959 | 16484738 | ID=MS.gene35372.t1.exon10;Parent=MS.gene35372.t1 |
chr2.1 | CDS | 16484738 | 16484959 | 16484738 | ID=cds.MS.gene35372.t1;Parent=MS.gene35372.t1 |
Gene Sequence |
Protein sequence |