Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35651.t1 | XP_003601118.1 | 97.4 | 307 | 8 | 0 | 1 | 307 | 7 | 313 | 2.10E-170 | 608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35651.t1 | G7J3N5 | 97.4 | 307 | 8 | 0 | 1 | 307 | 7 | 313 | 1.5e-170 | 608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene35651 | 0.82321 | 1.57E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene35651 | 0.826653 | 2.41E-54 | -1.69E-46 |
| MS.gene050116 | MS.gene35651 | 0.816768 | 4.66E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene35651 | 0.822019 | 2.96E-53 | -1.69E-46 |
| MS.gene052242 | MS.gene35651 | -0.809568 | 1.77E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene35651 | 0.843533 | 1.32E-58 | -1.69E-46 |
| MS.gene05615 | MS.gene35651 | 0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene35651 | 0.855783 | 5.00E-62 | -1.69E-46 |
| MS.gene060563 | MS.gene35651 | 0.840768 | 7.13E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35651.t1 | MTR_3g073240 | 97.394 | 307 | 8 | 0 | 1 | 307 | 7 | 313 | 0.0 | 622 |
| MS.gene35651.t1 | MTR_4g094420 | 54.878 | 246 | 97 | 5 | 2 | 239 | 8 | 247 | 1.69e-85 | 261 |
| MS.gene35651.t1 | MTR_7g059110 | 43.750 | 224 | 83 | 2 | 42 | 224 | 24 | 245 | 2.39e-58 | 191 |
| MS.gene35651.t1 | MTR_4g113730 | 38.696 | 230 | 100 | 2 | 37 | 226 | 43 | 271 | 6.73e-49 | 166 |
| MS.gene35651.t1 | MTR_1g009790 | 40.000 | 205 | 117 | 2 | 17 | 221 | 1 | 199 | 3.46e-48 | 163 |
| MS.gene35651.t1 | MTR_1g009790 | 40.000 | 205 | 117 | 2 | 17 | 221 | 1 | 199 | 7.84e-48 | 163 |
| MS.gene35651.t1 | MTR_8g085870 | 42.188 | 192 | 103 | 1 | 30 | 213 | 34 | 225 | 2.18e-47 | 164 |
| MS.gene35651.t1 | MTR_7g059110 | 57.522 | 113 | 48 | 0 | 112 | 224 | 170 | 282 | 5.64e-38 | 139 |
| MS.gene35651.t1 | MTR_7g059110 | 46.591 | 88 | 41 | 2 | 42 | 123 | 24 | 111 | 7.98e-16 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35651.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 28 | 222 | 33 | 205 | 2.63e-83 | 253 |
| MS.gene35651.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 28 | 222 | 33 | 205 | 2.63e-83 | 253 |
| MS.gene35651.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 28 | 222 | 33 | 205 | 2.63e-83 | 253 |
| MS.gene35651.t1 | AT4G08460 | 62.051 | 195 | 52 | 2 | 28 | 222 | 33 | 205 | 2.63e-83 | 253 |
| MS.gene35651.t1 | AT1G77770 | 53.125 | 224 | 66 | 3 | 4 | 227 | 6 | 190 | 1.82e-74 | 229 |
| MS.gene35651.t1 | AT1G77770 | 53.125 | 224 | 66 | 3 | 4 | 227 | 6 | 190 | 2.03e-74 | 229 |
| MS.gene35651.t1 | AT1G77770 | 53.125 | 224 | 66 | 3 | 4 | 227 | 6 | 190 | 2.03e-74 | 229 |
| MS.gene35651.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 31 | 224 | 42 | 220 | 5.20e-72 | 226 |
| MS.gene35651.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 31 | 224 | 42 | 220 | 5.20e-72 | 226 |
| MS.gene35651.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 31 | 224 | 42 | 220 | 5.20e-72 | 226 |
| MS.gene35651.t1 | AT1G68140 | 54.639 | 194 | 73 | 2 | 31 | 224 | 42 | 220 | 5.29e-72 | 225 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT3G24740 | 40.359 | 223 | 99 | 3 | 37 | 225 | 19 | 241 | 1.66e-53 | 179 |
| MS.gene35651.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 38 | 251 | 28 | 225 | 7.56e-47 | 160 |
| MS.gene35651.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 38 | 251 | 28 | 225 | 7.56e-47 | 160 |
| MS.gene35651.t1 | AT4G31410 | 40.092 | 217 | 108 | 5 | 38 | 251 | 28 | 225 | 7.56e-47 | 160 |
| MS.gene35651.t1 | AT3G25910 | 36.325 | 234 | 96 | 2 | 37 | 217 | 36 | 269 | 2.60e-43 | 152 |
| MS.gene35651.t1 | AT1G15430 | 35.204 | 196 | 99 | 3 | 13 | 204 | 18 | 189 | 5.13e-35 | 128 |
| MS.gene35651.t1 | AT1G15430 | 35.204 | 196 | 99 | 3 | 13 | 204 | 18 | 189 | 5.13e-35 | 128 |
| MS.gene35651.t1 | AT1G80220 | 31.298 | 262 | 144 | 6 | 13 | 273 | 18 | 244 | 2.08e-34 | 126 |
| MS.gene35651.t1 | AT2G26050 | 32.624 | 141 | 70 | 2 | 64 | 203 | 38 | 154 | 3.12e-20 | 87.8 |
Find 77 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTTCTGCTGCTCTTTC+TGG | 0.086227 | 3.3:-63397921 | MS.gene35651:CDS |
| ACTGATTCTGATGATGAATT+TGG | 0.163731 | 3.3:-63398059 | MS.gene35651:CDS |
| CTATGCCTCCGTCGTCTTCT+AGG | 0.214329 | 3.3:+63397867 | None:intergenic |
| CGGCTAGTAGCACACATATA+AGG | 0.248105 | 3.3:+63398551 | None:intergenic |
| CTAGCACAAGATAAAAGATA+TGG | 0.288835 | 3.3:+63398713 | None:intergenic |
| TCTTGCCATTCAGAGACTTC+CGG | 0.294090 | 3.3:+63398333 | None:intergenic |
| TTCTTCGGCTCCATTGGTTT+GGG | 0.298539 | 3.3:-63398020 | MS.gene35651:CDS |
| CTTGCCATTCAGAGACTTCC+GGG | 0.300913 | 3.3:+63398334 | None:intergenic |
| TTTCTTCGGCTCCATTGGTT+TGG | 0.320053 | 3.3:-63398021 | MS.gene35651:CDS |
| CTGATTCTGATGATGAATTT+GGG | 0.329708 | 3.3:-63398058 | MS.gene35651:CDS |
| TTTCCTTGTGACCTCGAGAT+TGG | 0.332101 | 3.3:+63398738 | None:intergenic |
| GTGGTACTGGCAGCTTTATC+AGG | 0.366519 | 3.3:-63397998 | MS.gene35651:CDS |
| CTTTCACCTGTCGGCGGCAA+AGG | 0.373229 | 3.3:+63398378 | None:intergenic |
| TCCATTGGTTTGGGTGGTAC+TGG | 0.373732 | 3.3:-63398011 | MS.gene35651:CDS |
| TTCCTTGTGACCTCGAGATT+GGG | 0.384905 | 3.3:+63398739 | None:intergenic |
| CTGTATAATCCACGGTCATT+TGG | 0.390948 | 3.3:+63398089 | None:intergenic |
| GGTGATTTCTTCGGCTCCAT+TGG | 0.401886 | 3.3:-63398026 | MS.gene35651:CDS |
| GGCTAGTAGCACACATATAA+GGG | 0.411650 | 3.3:+63398552 | None:intergenic |
| TAGCACAAGATAAAAGATAT+GGG | 0.419897 | 3.3:+63398714 | None:intergenic |
| TTTCGGAGTGGTGCATCTAC+AGG | 0.420225 | 3.3:-63397939 | MS.gene35651:CDS |
| TTTCACCTGTCGGCGGCAAA+GGG | 0.426605 | 3.3:+63398379 | None:intergenic |
| GAGGATGATGGTGATTTCTT+CGG | 0.432897 | 3.3:-63398035 | MS.gene35651:CDS |
| TTGTCCCCTTTGCCGCCGAC+AGG | 0.433551 | 3.3:-63398384 | MS.gene35651:CDS |
| TGCTACCTGCTCAGTCTGTA+TGG | 0.441789 | 3.3:-63398630 | MS.gene35651:CDS |
| CGGGGAGTTACAAGGAGCTT+AGG | 0.444681 | 3.3:-63398277 | MS.gene35651:CDS |
| CCAAAGTCATCGACATCAAA+AGG | 0.453118 | 3.3:+63397963 | None:intergenic |
| AACTCCAGGAGCTATGGTAC+TGG | 0.457705 | 3.3:-63398129 | MS.gene35651:CDS |
| ACTTCTCGTGGTCGCGAACA+TGG | 0.461952 | 3.3:+63398233 | None:intergenic |
| GTCTTCAACTCCAGGAGCTA+TGG | 0.467465 | 3.3:-63398135 | MS.gene35651:CDS |
| GAGGAGTAGGATAGCATTGT+GGG | 0.468661 | 3.3:+63398601 | None:intergenic |
| AAGCGGTAGAAAAGAAAGAT+TGG | 0.472915 | 3.3:-63398658 | MS.gene35651:CDS |
| CAAAGGGGACAAAGAAGCTC+AGG | 0.485626 | 3.3:+63398395 | None:intergenic |
| TCTGCTGCTCTTTCTGGACG+TGG | 0.489978 | 3.3:-63397915 | MS.gene35651:CDS |
| ACTCCAGGAGCTATGGTACT+GGG | 0.514732 | 3.3:-63398128 | MS.gene35651:CDS |
| CTAGAAGACGACGGAGGCAT+AGG | 0.517476 | 3.3:-63397866 | MS.gene35651:CDS |
| CTTTGCCGCCGACAGGTGAA+AGG | 0.519049 | 3.3:-63398377 | MS.gene35651:CDS |
| ATGTTCGCGACCACGAGAAG+TGG | 0.522683 | 3.3:-63398231 | MS.gene35651:CDS |
| TTCGGCTCCATTGGTTTGGG+TGG | 0.524118 | 3.3:-63398017 | MS.gene35651:CDS |
| AGGCATAGGGTACTGAATGC+TGG | 0.551130 | 3.3:-63397852 | MS.gene35651:CDS |
| CCTCTGTTCATCGTATAACA+AGG | 0.553685 | 3.3:-63398582 | MS.gene35651:CDS |
| TTTCTGGACGTGGATTCCAC+AGG | 0.555472 | 3.3:-63397905 | MS.gene35651:CDS |
| GTCCCAATCTCGAGGTCACA+AGG | 0.563412 | 3.3:-63398741 | MS.gene35651:CDS |
| TAGAAGACGACGGAGGCATA+GGG | 0.563527 | 3.3:-63397865 | MS.gene35651:CDS |
| GGACTGTGGTTGAAGCAGCC+CGG | 0.563979 | 3.3:-63398352 | MS.gene35651:CDS |
| GATGAATTTGGGGAGGATGA+TGG | 0.566776 | 3.3:-63398047 | MS.gene35651:CDS |
| AATTCGAGTGTGAAAGAGAA+CGG | 0.568336 | 3.3:-63398181 | MS.gene35651:CDS |
| GCCGCCGACAGGTGAAAGGT+TGG | 0.568951 | 3.3:-63398373 | MS.gene35651:CDS |
| GCCAGTACCACCCAAACCAA+TGG | 0.572874 | 3.3:+63398010 | None:intergenic |
| TGGATTCCACAGGATACTGT+TGG | 0.574386 | 3.3:-63397895 | MS.gene35651:CDS |
| GTCTTTCCAACAGTATCCTG+TGG | 0.591460 | 3.3:+63397889 | None:intergenic |
| AGAGGAGTAGGATAGCATTG+TGG | 0.593867 | 3.3:+63398600 | None:intergenic |
| CAGTCCAACCTTTCACCTGT+CGG | 0.596695 | 3.3:+63398369 | None:intergenic |
| AACCTCCATACAGACTGAGC+AGG | 0.601071 | 3.3:+63398625 | None:intergenic |
| GCAGCCCGGAAGTCTCTGAA+TGG | 0.601426 | 3.3:-63398338 | MS.gene35651:CDS |
| AAAAGAAGCTGTATGCAAGA+TGG | 0.602513 | 3.3:-63398311 | MS.gene35651:CDS |
| TATACGATGAACAGAGGAGT+AGG | 0.603641 | 3.3:+63398588 | None:intergenic |
| CTCCAGGAGCTATGGTACTG+GGG | 0.607503 | 3.3:-63398127 | MS.gene35651:CDS |
| ATAGGGTACTGAATGCTGGC+CGG | 0.616066 | 3.3:-63397848 | MS.gene35651:CDS |
| TCCAGGAGCTATGGTACTGG+GGG | 0.617378 | 3.3:-63398126 | MS.gene35651:CDS |
| AGCACAAGATAAAAGATATG+GGG | 0.621741 | 3.3:+63398715 | None:intergenic |
| CAAAACAGTTAGAATAGCGA+CGG | 0.627893 | 3.3:+63398531 | None:intergenic |
| TCCAACCTTTCACCTGTCGG+CGG | 0.644382 | 3.3:+63398372 | None:intergenic |
| TGATTCTGATGATGAATTTG+GGG | 0.645133 | 3.3:-63398057 | MS.gene35651:CDS |
| TACCTGCTCAGTCTGTATGG+AGG | 0.645194 | 3.3:-63398627 | MS.gene35651:CDS |
| CTCTGTTCATCGTATAACAA+GGG | 0.645683 | 3.3:-63398581 | MS.gene35651:CDS |
| CGTACAGGGTCCACTTCTCG+TGG | 0.645791 | 3.3:+63398221 | None:intergenic |
| TTCACCTGTCGGCGGCAAAG+GGG | 0.648214 | 3.3:+63398380 | None:intergenic |
| TTCTGATGATGAATTTGGGG+AGG | 0.654732 | 3.3:-63398054 | MS.gene35651:CDS |
| TTTCGTCGCTGTATAATCCA+CGG | 0.656197 | 3.3:+63398081 | None:intergenic |
| CGGTGCAAGTCCCAATCTCG+AGG | 0.662801 | 3.3:-63398749 | MS.gene35651:CDS |
| GTAGAAAAGAAAGATTGGAA+AGG | 0.684023 | 3.3:-63398653 | MS.gene35651:CDS |
| GTGCTCGAGCCAAATGACCG+TGG | 0.685398 | 3.3:-63398098 | MS.gene35651:CDS |
| CCTTGTTATACGATGAACAG+AGG | 0.702851 | 3.3:+63398582 | None:intergenic |
| TGGAAAGACCTAGAAGACGA+CGG | 0.711922 | 3.3:-63397875 | MS.gene35651:CDS |
| AGGAGTAGGATAGCATTGTG+GGG | 0.724984 | 3.3:+63398602 | None:intergenic |
| ACAGGTGAAAGGTTGGACTG+TGG | 0.742392 | 3.3:-63398366 | MS.gene35651:CDS |
| AAAGACCTAGAAGACGACGG+AGG | 0.779006 | 3.3:-63397872 | MS.gene35651:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGAAAAATGTCAAG+AGG | - | chr3.3:63397909-63397928 | MS.gene35651:CDS | 20.0% |
| ! | TAGCACAAGATAAAAGATAT+GGG | + | chr3.3:63397886-63397905 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAACAGTATAAAA+AGG | - | chr3.3:63398081-63398100 | MS.gene35651:CDS | 25.0% |
| !!! | TCGAATTTTGATTCTAATTC+TGG | - | chr3.3:63398154-63398173 | MS.gene35651:CDS | 25.0% |
| AGCACAAGATAAAAGATATG+GGG | + | chr3.3:63397885-63397904 | None:intergenic | 30.0% | |
| CTAGCACAAGATAAAAGATA+TGG | + | chr3.3:63397887-63397906 | None:intergenic | 30.0% | |
| GTAGAAAAGAAAGATTGGAA+AGG | - | chr3.3:63397944-63397963 | MS.gene35651:CDS | 30.0% | |
| ! | ACTGATTCTGATGATGAATT+TGG | - | chr3.3:63398538-63398557 | MS.gene35651:CDS | 30.0% |
| ! | CTGATTCTGATGATGAATTT+GGG | - | chr3.3:63398539-63398558 | MS.gene35651:CDS | 30.0% |
| ! | TGATTCTGATGATGAATTTG+GGG | - | chr3.3:63398540-63398559 | MS.gene35651:CDS | 30.0% |
| AAAAGAAGCTGTATGCAAGA+TGG | - | chr3.3:63398286-63398305 | MS.gene35651:CDS | 35.0% | |
| AAGCGGTAGAAAAGAAAGAT+TGG | - | chr3.3:63397939-63397958 | MS.gene35651:CDS | 35.0% | |
| AATTCGAGTGTGAAAGAGAA+CGG | - | chr3.3:63398416-63398435 | MS.gene35651:CDS | 35.0% | |
| CAAAACAGTTAGAATAGCGA+CGG | + | chr3.3:63398069-63398088 | None:intergenic | 35.0% | |
| CTCTGTTCATCGTATAACAA+GGG | - | chr3.3:63398016-63398035 | MS.gene35651:CDS | 35.0% | |
| ! | ACAATTTTGTCTTCAACTCC+AGG | - | chr3.3:63398454-63398473 | MS.gene35651:CDS | 35.0% |
| !! | TCCATTTTTCTTCTCGTACA+GGG | + | chr3.3:63398393-63398412 | None:intergenic | 35.0% |
| !! | TGTCAAGAGGTTTTCTAAAG+CGG | - | chr3.3:63397922-63397941 | MS.gene35651:CDS | 35.0% |
| !! | TTCCATTTTTCTTCTCGTAC+AGG | + | chr3.3:63398394-63398413 | None:intergenic | 35.0% |
| !!! | ATGTCGATGACTTTGGTTTT+CGG | - | chr3.3:63398641-63398660 | MS.gene35651:CDS | 35.0% |
| ACCCTGTACGAGAAGAAAAA+TGG | - | chr3.3:63398389-63398408 | MS.gene35651:CDS | 40.0% | |
| CCAAAGTCATCGACATCAAA+AGG | + | chr3.3:63398637-63398656 | None:intergenic | 40.0% | |
| CCTCTGTTCATCGTATAACA+AGG | - | chr3.3:63398015-63398034 | MS.gene35651:CDS | 40.0% | |
| CTGTATAATCCACGGTCATT+TGG | + | chr3.3:63398511-63398530 | None:intergenic | 40.0% | |
| GGCTAGTAGCACACATATAA+GGG | + | chr3.3:63398048-63398067 | None:intergenic | 40.0% | |
| TATACGATGAACAGAGGAGT+AGG | + | chr3.3:63398012-63398031 | None:intergenic | 40.0% | |
| TTTCGTCGCTGTATAATCCA+CGG | + | chr3.3:63398519-63398538 | None:intergenic | 40.0% | |
| ! | CCTTGTTATACGATGAACAG+AGG | + | chr3.3:63398018-63398037 | None:intergenic | 40.0% |
| ! | CCTTTTGATGTCGATGACTT+TGG | - | chr3.3:63398634-63398653 | MS.gene35651:CDS | 40.0% |
| ! | GAACTTTTGCATCGTCACTA+CGG | + | chr3.3:63398183-63398202 | None:intergenic | 40.0% |
| ! | GAGGATGATGGTGATTTCTT+CGG | - | chr3.3:63398562-63398581 | MS.gene35651:CDS | 40.0% |
| ! | TTCTGATGATGAATTTGGGG+AGG | - | chr3.3:63398543-63398562 | MS.gene35651:CDS | 40.0% |
| AGAGGAGTAGGATAGCATTG+TGG | + | chr3.3:63398000-63398019 | None:intergenic | 45.0% | |
| AGGAGTAGGATAGCATTGTG+GGG | + | chr3.3:63397998-63398017 | None:intergenic | 45.0% | |
| CGGCTAGTAGCACACATATA+AGG | + | chr3.3:63398049-63398068 | None:intergenic | 45.0% | |
| GAGGAGTAGGATAGCATTGT+GGG | + | chr3.3:63397999-63398018 | None:intergenic | 45.0% | |
| GATGAATTTGGGGAGGATGA+TGG | - | chr3.3:63398550-63398569 | MS.gene35651:CDS | 45.0% | |
| GTCTTTCCAACAGTATCCTG+TGG | + | chr3.3:63398711-63398730 | None:intergenic | 45.0% | |
| TCTTGCCATTCAGAGACTTC+CGG | + | chr3.3:63398267-63398286 | None:intergenic | 45.0% | |
| TGGAAAGACCTAGAAGACGA+CGG | - | chr3.3:63398722-63398741 | MS.gene35651:CDS | 45.0% | |
| TGGATTCCACAGGATACTGT+TGG | - | chr3.3:63398702-63398721 | MS.gene35651:CDS | 45.0% | |
| TTCCTTGTGACCTCGAGATT+GGG | + | chr3.3:63397861-63397880 | None:intergenic | 45.0% | |
| TTTCCTTGTGACCTCGAGAT+TGG | + | chr3.3:63397862-63397881 | None:intergenic | 45.0% | |
| ! | AAGATGGCTGTTCTTTTGCG+GGG | - | chr3.3:63398302-63398321 | MS.gene35651:CDS | 45.0% |
| ! | CAAGATGGCTGTTCTTTTGC+GGG | - | chr3.3:63398301-63398320 | MS.gene35651:CDS | 45.0% |
| ! | GCAAGATGGCTGTTCTTTTG+CGG | - | chr3.3:63398300-63398319 | MS.gene35651:CDS | 45.0% |
| ! | TTCTTTTGCGGGGAGTTACA+AGG | - | chr3.3:63398312-63398331 | MS.gene35651:CDS | 45.0% |
| ! | TTTCTTCGGCTCCATTGGTT+TGG | - | chr3.3:63398576-63398595 | MS.gene35651:CDS | 45.0% |
| !! | TTCTTCGGCTCCATTGGTTT+GGG | - | chr3.3:63398577-63398596 | MS.gene35651:CDS | 45.0% |
| !!! | GATGACTTTGGTTTTCGGAG+TGG | - | chr3.3:63398646-63398665 | MS.gene35651:CDS | 45.0% |
| AAAGACCTAGAAGACGACGG+AGG | - | chr3.3:63398725-63398744 | MS.gene35651:CDS | 50.0% | |
| AACCTCCATACAGACTGAGC+AGG | + | chr3.3:63397975-63397994 | None:intergenic | 50.0% | |
| AACTCCAGGAGCTATGGTAC+TGG | - | chr3.3:63398468-63398487 | MS.gene35651:CDS | 50.0% | |
| ACAGGTGAAAGGTTGGACTG+TGG | - | chr3.3:63398231-63398250 | MS.gene35651:CDS | 50.0% | |
| ACAGGTTCTGCTGCTCTTTC+TGG | - | chr3.3:63398676-63398695 | MS.gene35651:CDS | 50.0% | |
| ACTCCAGGAGCTATGGTACT+GGG | - | chr3.3:63398469-63398488 | MS.gene35651:CDS | 50.0% | |
| CAAAGGGGACAAAGAAGCTC+AGG | + | chr3.3:63398205-63398224 | None:intergenic | 50.0% | |
| CAGTCCAACCTTTCACCTGT+CGG | + | chr3.3:63398231-63398250 | None:intergenic | 50.0% | |
| CTTGCCATTCAGAGACTTCC+GGG | + | chr3.3:63398266-63398285 | None:intergenic | 50.0% | |
| GGTGATTTCTTCGGCTCCAT+TGG | - | chr3.3:63398571-63398590 | MS.gene35651:CDS | 50.0% | |
| GTCTTCAACTCCAGGAGCTA+TGG | - | chr3.3:63398462-63398481 | MS.gene35651:CDS | 50.0% | |
| TACCTGCTCAGTCTGTATGG+AGG | - | chr3.3:63397970-63397989 | MS.gene35651:CDS | 50.0% | |
| TGCTACCTGCTCAGTCTGTA+TGG | - | chr3.3:63397967-63397986 | MS.gene35651:CDS | 50.0% | |
| TTTCGGAGTGGTGCATCTAC+AGG | - | chr3.3:63398658-63398677 | MS.gene35651:CDS | 50.0% | |
| TTTCTGGACGTGGATTCCAC+AGG | - | chr3.3:63398692-63398711 | MS.gene35651:CDS | 50.0% | |
| ! | TAGAAGACGACGGAGGCATA+GGG | - | chr3.3:63398732-63398751 | MS.gene35651:CDS | 50.0% |
| !! | AGGCATAGGGTACTGAATGC+TGG | - | chr3.3:63398745-63398764 | MS.gene35651:CDS | 50.0% |
| !! | ATAGGGTACTGAATGCTGGC+CGG | - | chr3.3:63398749-63398768 | MS.gene35651:CDS | 50.0% |
| !! | GTGGTACTGGCAGCTTTATC+AGG | - | chr3.3:63398599-63398618 | MS.gene35651:CDS | 50.0% |
| !! | TCCATTGGTTTGGGTGGTAC+TGG | - | chr3.3:63398586-63398605 | MS.gene35651:CDS | 50.0% |
| ACTTCTCGTGGTCGCGAACA+TGG | + | chr3.3:63398367-63398386 | None:intergenic | 55.0% | |
| ATGTTCGCGACCACGAGAAG+TGG | - | chr3.3:63398366-63398385 | MS.gene35651:CDS | 55.0% | |
| CGGGGAGTTACAAGGAGCTT+AGG | - | chr3.3:63398320-63398339 | MS.gene35651:CDS | 55.0% | |
| CTATGCCTCCGTCGTCTTCT+AGG | + | chr3.3:63398733-63398752 | None:intergenic | 55.0% | |
| CTCCAGGAGCTATGGTACTG+GGG | - | chr3.3:63398470-63398489 | MS.gene35651:CDS | 55.0% | |
| GCCAGTACCACCCAAACCAA+TGG | + | chr3.3:63398590-63398609 | None:intergenic | 55.0% | |
| GTCCCAATCTCGAGGTCACA+AGG | - | chr3.3:63397856-63397875 | MS.gene35651:CDS | 55.0% | |
| TCCAACCTTTCACCTGTCGG+CGG | + | chr3.3:63398228-63398247 | None:intergenic | 55.0% | |
| TCTGCTGCTCTTTCTGGACG+TGG | - | chr3.3:63398682-63398701 | MS.gene35651:CDS | 55.0% | |
| TTTCACCTGTCGGCGGCAAA+GGG | + | chr3.3:63398221-63398240 | None:intergenic | 55.0% | |
| ! | CTAGAAGACGACGGAGGCAT+AGG | - | chr3.3:63398731-63398750 | MS.gene35651:CDS | 55.0% |
| ! | TCCAGGAGCTATGGTACTGG+GGG | - | chr3.3:63398471-63398490 | MS.gene35651:CDS | 55.0% |
| !! | TTCGGCTCCATTGGTTTGGG+TGG | - | chr3.3:63398580-63398599 | MS.gene35651:CDS | 55.0% |
| CGGTGCAAGTCCCAATCTCG+AGG | - | chr3.3:63397848-63397867 | MS.gene35651:CDS | 60.0% | |
| CGTACAGGGTCCACTTCTCG+TGG | + | chr3.3:63398379-63398398 | None:intergenic | 60.0% | |
| CTTTCACCTGTCGGCGGCAA+AGG | + | chr3.3:63398222-63398241 | None:intergenic | 60.0% | |
| CTTTGCCGCCGACAGGTGAA+AGG | - | chr3.3:63398220-63398239 | MS.gene35651:CDS | 60.0% | |
| GCAGCCCGGAAGTCTCTGAA+TGG | - | chr3.3:63398259-63398278 | MS.gene35651:CDS | 60.0% | |
| GGACTGTGGTTGAAGCAGCC+CGG | - | chr3.3:63398245-63398264 | MS.gene35651:CDS | 60.0% | |
| GTGCTCGAGCCAAATGACCG+TGG | - | chr3.3:63398499-63398518 | MS.gene35651:CDS | 60.0% | |
| TCCCCCAGTACCATAGCTCC+TGG | + | chr3.3:63398475-63398494 | None:intergenic | 60.0% | |
| TTCACCTGTCGGCGGCAAAG+GGG | + | chr3.3:63398220-63398239 | None:intergenic | 60.0% | |
| GCCGCCGACAGGTGAAAGGT+TGG | - | chr3.3:63398224-63398243 | MS.gene35651:CDS | 65.0% | |
| TTGTCCCCTTTGCCGCCGAC+AGG | - | chr3.3:63398213-63398232 | MS.gene35651:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 63397845 | 63398774 | 63397845 | ID=MS.gene35651 |
| chr3.3 | mRNA | 63397845 | 63398774 | 63397845 | ID=MS.gene35651.t1;Parent=MS.gene35651 |
| chr3.3 | exon | 63397845 | 63398774 | 63397845 | ID=MS.gene35651.t1.exon1;Parent=MS.gene35651.t1 |
| chr3.3 | CDS | 63397845 | 63398774 | 63397845 | ID=cds.MS.gene35651.t1;Parent=MS.gene35651.t1 |
| Gene Sequence |
| Protein sequence |
