AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35768

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35768.t1 MTR_2g089140 98.969 291 3 0 1 291 1 291 0.0 610
MS.gene35768.t1 MTR_4g045853 78.351 291 62 1 2 291 3 293 0.0 500
MS.gene35768.t1 MTR_2g089140 98.684 228 3 0 64 291 1 228 9.38e-174 479
MS.gene35768.t1 MTR_7g084770 51.203 291 121 4 11 288 7 289 5.72e-105 308
MS.gene35768.t1 MTR_7g084760 50.172 291 124 4 11 288 7 289 4.75e-103 303
MS.gene35768.t1 MTR_7g084750 53.383 266 114 3 25 288 32 289 3.17e-102 300
MS.gene35768.t1 MTR_6g033055 47.945 292 135 5 5 288 7 289 8.17e-101 297
MS.gene35768.t1 MTR_4g097700 51.095 274 122 3 17 287 61 325 6.37e-100 296
MS.gene35768.t1 MTR_6g033085 48.454 291 133 5 6 288 8 289 9.93e-100 294
MS.gene35768.t1 MTR_4g097640 51.866 268 117 3 23 287 30 288 1.21e-99 294
MS.gene35768.t1 MTR_4g097670 51.866 268 117 3 23 287 30 288 1.21e-99 294
MS.gene35768.t1 MTR_4g128410 50.549 273 123 4 17 286 17 280 2.69e-97 288
MS.gene35768.t1 MTR_7g093530 50.000 274 125 4 17 287 16 280 2.17e-94 280
MS.gene35768.t1 MTR_3g084620 49.306 288 125 6 5 288 9 279 2.32e-94 280
MS.gene35768.t1 MTR_3g084630 48.958 288 126 6 5 288 9 279 6.67e-94 279
MS.gene35768.t1 MTR_4g126920 49.091 275 129 4 15 286 15 281 2.50e-93 278
MS.gene35768.t1 MTR_2g038860 49.117 283 137 3 8 287 9 287 2.80e-92 275
MS.gene35768.t1 MTR_2g038705 49.117 283 137 3 8 287 9 287 2.80e-92 275
MS.gene35768.t1 MTR_8g081040 47.183 284 126 4 13 286 12 281 4.84e-92 274
MS.gene35768.t1 MTR_1g105495 49.265 272 126 4 20 286 30 294 2.70e-91 273
MS.gene35768.t1 MTR_4g128570 47.387 287 125 5 4 287 10 273 6.06e-91 271
MS.gene35768.t1 MTR_6g088320 44.718 284 147 3 10 288 7 285 2.97e-90 270
MS.gene35768.t1 MTR_4g128400 47.122 278 136 4 12 287 16 284 1.70e-89 268
MS.gene35768.t1 MTR_4g128580 48.327 269 131 4 22 287 23 286 8.22e-89 266
MS.gene35768.t1 MTR_1g105900 44.330 291 139 5 12 286 8 291 9.02e-87 261
MS.gene35768.t1 MTR_8g102910 44.211 285 151 4 7 288 2 281 2.68e-85 257
MS.gene35768.t1 MTR_8g102220 44.521 292 130 5 3 290 7 270 1.02e-83 253
MS.gene35768.t1 MTR_5g091730 44.326 282 140 5 8 288 15 280 2.25e-81 247
MS.gene35768.t1 MTR_4g128590 44.948 287 134 5 4 286 9 275 1.17e-80 245
MS.gene35768.t1 MTR_8g013055 42.642 265 141 4 25 287 31 286 9.08e-77 236
MS.gene35768.t1 MTR_3g089540 43.284 268 137 4 25 291 34 287 1.12e-74 230
MS.gene35768.t1 MTR_7g056090 40.484 289 147 8 4 279 1 277 1.06e-64 204
MS.gene35768.t1 MTR_2g049130 36.824 296 160 9 6 290 2 281 6.12e-58 187
MS.gene35768.t1 MTR_2g049030 38.224 259 143 8 25 280 30 274 8.67e-58 187
MS.gene35768.t1 MTR_7g102260 36.170 282 152 6 18 286 25 291 1.81e-55 181
MS.gene35768.t1 MTR_1g033420 36.424 302 167 8 1 287 1 292 2.12e-55 182
MS.gene35768.t1 MTR_5g029100 38.247 251 145 5 41 286 60 305 7.70e-55 181
MS.gene35768.t1 MTR_1g063020 36.000 275 153 5 20 286 35 294 3.12e-54 178
MS.gene35768.t1 MTR_2g095800 35.273 275 156 5 20 286 49 309 3.40e-54 178
MS.gene35768.t1 MTR_4g057450 33.455 275 160 4 20 286 45 304 6.47e-53 175
MS.gene35768.t1 MTR_5g029100 35.034 294 160 10 4 286 1 274 6.00e-51 170
MS.gene35768.t1 MTR_8g090100 34.420 276 164 8 20 287 16 282 1.79e-49 167
MS.gene35768.t1 MTR_8g064180 33.214 280 168 8 16 286 41 310 1.54e-47 161
MS.gene35768.t1 MTR_8g479340 44.118 102 50 2 185 286 41 135 2.33e-23 93.6
MS.gene35768.t1 MTR_8g032640 34.254 181 108 6 45 220 33 207 1.67e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35768.t1 AT4G03210 68.836 292 84 4 1 291 4 289 7.96e-157 439
MS.gene35768.t1 AT4G03210 74.262 237 55 3 55 291 31 261 6.54e-138 390
MS.gene35768.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene35768.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene35768.t1 AT5G13870 49.498 299 130 5 1 288 1 289 5.19e-104 305
MS.gene35768.t1 AT4G37800 50.175 285 124 5 10 286 15 289 1.40e-99 294
MS.gene35768.t1 AT5G65730 48.772 285 132 5 6 286 16 290 3.88e-97 288
MS.gene35768.t1 AT3G23730 48.582 282 137 3 12 290 14 290 1.45e-96 286
MS.gene35768.t1 AT2G06850 51.128 266 120 3 25 288 35 292 3.91e-96 285
MS.gene35768.t1 AT4G14130 46.758 293 143 5 2 290 5 288 3.65e-92 275
MS.gene35768.t1 AT1G11545 48.161 299 129 7 5 286 10 299 4.33e-92 275
MS.gene35768.t1 AT5G57560 46.996 283 137 4 12 287 6 282 1.21e-91 273
MS.gene35768.t1 AT4G25810 46.975 281 139 4 10 287 11 284 4.24e-91 272
MS.gene35768.t1 AT2G06850 52.542 236 104 2 53 288 5 232 2.57e-90 268
MS.gene35768.t1 AT5G57530 48.708 271 125 5 20 286 22 282 2.09e-89 268
MS.gene35768.t1 AT4G28850 43.729 295 154 3 4 290 1 291 7.15e-89 266
MS.gene35768.t1 AT5G57540 50.794 252 112 4 37 286 40 281 8.08e-89 266
MS.gene35768.t1 AT5G57550 46.667 285 135 7 8 289 14 284 2.51e-88 265
MS.gene35768.t1 AT4G30270 47.600 250 107 3 39 287 40 266 1.02e-84 255
MS.gene35768.t1 AT2G14620 43.599 289 153 4 1 286 13 294 1.27e-84 256
MS.gene35768.t1 AT4G25820 46.182 275 136 4 15 286 20 285 7.74e-84 254
MS.gene35768.t1 AT5G48070 43.390 295 141 6 4 286 1 281 1.07e-81 248
MS.gene35768.t1 AT2G14620 47.436 234 115 3 54 286 18 244 4.60e-80 243
MS.gene35768.t1 AT2G18800 42.953 298 153 7 4 290 9 300 6.35e-80 244
MS.gene35768.t1 AT4G13090 41.356 295 157 6 1 286 1 288 5.26e-79 241
MS.gene35768.t1 AT2G14620 47.556 225 110 3 63 286 16 233 2.62e-77 235
MS.gene35768.t1 AT3G25050 42.188 256 137 5 33 286 43 289 1.77e-74 230
MS.gene35768.t1 AT4G30280 40.541 296 148 7 3 286 2 281 8.16e-72 223
MS.gene35768.t1 AT4G30290 45.299 234 114 4 54 286 56 276 9.37e-72 223
MS.gene35768.t1 AT4G13080 42.424 264 139 5 25 286 39 291 2.74e-71 222
MS.gene35768.t1 AT1G65310 44.681 235 116 4 54 287 61 282 6.62e-71 220
MS.gene35768.t1 AT1G65310 44.681 235 116 4 54 287 83 304 9.02e-71 221
MS.gene35768.t1 AT3G44990 38.909 275 145 7 20 286 34 293 1.55e-58 189
MS.gene35768.t1 AT1G32170 37.838 296 157 8 7 287 11 294 4.39e-57 187
MS.gene35768.t1 AT2G36870 35.740 277 155 5 20 288 38 299 5.71e-55 180
MS.gene35768.t1 AT2G01850 36.897 290 168 6 4 287 11 291 1.03e-54 181
MS.gene35768.t1 AT1G14720 35.764 288 161 8 15 287 13 291 9.87e-54 178
MS.gene35768.t1 AT4G18990 36.727 275 149 6 34 287 43 313 4.46e-52 174
MS.gene35768.t1 AT1G10550 35.857 251 154 4 42 286 60 309 2.07e-51 171
MS.gene35768.t1 AT3G48580 35.081 248 138 7 39 286 49 273 2.71e-47 160
MS.gene35768.t1 AT3G48580 35.043 234 129 7 53 286 4 214 2.79e-45 152
MS.gene35768.t1 AT4G18990 37.931 203 112 4 95 287 41 239 1.62e-41 145
MS.gene35768.t1 AT3G48580 30.242 248 130 8 39 286 49 253 1.29e-31 118
MS.gene35768.t1 AT2G36870 39.716 141 77 2 20 152 38 178 2.39e-28 107

Find 72 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAGTCATCAACTTATT+TGG 0.098056 2.1:-12854643 MS.gene35768:CDS
ACACCCATTGCTTGGTCTTT+TGG 0.201495 2.1:+12854887 None:intergenic
TTCACACCTACTCAATCTTT+TGG 0.243898 2.1:-12855092 MS.gene35768:CDS
AAATTTGTGTGTACCCTTAT+TGG 0.244898 2.1:+12854932 None:intergenic
AATAAGGGTACACACAAATT+TGG 0.249258 2.1:-12854930 MS.gene35768:CDS
CTCAAACTTGACAATTATTC+TGG 0.264743 2.1:-12856248 MS.gene35768:intron
CCTATGGTTTGATCCATCTA+AGG 0.284782 2.1:-12855118 MS.gene35768:CDS
GTTTAAGCAAATCTCCTTCA+TGG 0.300049 2.1:+12856270 None:intergenic
ATTAATCTCAAAATCTTTGT+AGG 0.312339 2.1:+12854778 None:intergenic
ATGTGAATGGTGTTGGTAAT+AGG 0.322678 2.1:-12855155 MS.gene35768:CDS
TCTAAGAGCAAGTATATGTT+TGG 0.325807 2.1:-12855951 MS.gene35768:CDS
CGCCGATACCGCTAGGTTCC+CGG 0.343049 2.1:-12854588 MS.gene35768:CDS
AATCTCCTTCATGGACAAAA+TGG 0.349803 2.1:+12856279 None:intergenic
TCAGAGTCATCAACTTATTT+GGG 0.358684 2.1:-12854642 MS.gene35768:CDS
CATTCACATACACATTGGTT+TGG 0.378407 2.1:+12855169 None:intergenic
GTCATCAACTTATTTGGGTT+AGG 0.378827 2.1:-12854637 MS.gene35768:CDS
GACTAGGATGTCTTGTCTCT+TGG 0.394663 2.1:-12856384 MS.gene35768:CDS
TGTGAATGGTGTTGGTAATA+GGG 0.395674 2.1:-12855154 MS.gene35768:CDS
TTGGGTTAGGGCTAATCATA+TGG 0.396546 2.1:-12854624 MS.gene35768:CDS
TAGTGGATGAGACACCAATA+AGG 0.397181 2.1:-12854946 MS.gene35768:CDS
GGTTGCTTCTTCAAAATTTG+AGG 0.401010 2.1:-12856330 MS.gene35768:CDS
AATCAAATTCATTATGAGTT+GGG 0.401796 2.1:+12855232 None:intergenic
GGAACTCTTCCAACCTGGTT+GGG 0.409532 2.1:-12856309 MS.gene35768:CDS
TCATCAACTTATTTGGGTTA+GGG 0.410906 2.1:-12854636 MS.gene35768:CDS
GCATTATCATTTGATGTCAC+TGG 0.424930 2.1:+12854737 None:intergenic
ACTAGGATGTCTTGTCTCTT+GGG 0.432912 2.1:-12856383 MS.gene35768:CDS
CTAAGAGCAAGTATATGTTT+GGG 0.441320 2.1:-12855950 MS.gene35768:CDS
ACATTGGTTTGGACTGAGTA+AGG 0.449690 2.1:+12855180 None:intergenic
CAATATGGAATGCAGATGAT+TGG 0.451938 2.1:-12854856 MS.gene35768:CDS
AAATCAAATTCATTATGAGT+TGG 0.460794 2.1:+12855231 None:intergenic
GTAGTGAAGATAAGAAATAC+TGG 0.473390 2.1:-12854700 MS.gene35768:CDS
AACTGTATACACCCATTGCT+TGG 0.473431 2.1:+12854879 None:intergenic
AATATGGAATGCAGATGATT+GGG 0.477902 2.1:-12854855 MS.gene35768:CDS
AGGAACTCTTCCAACCTGGT+TGG 0.478573 2.1:-12856310 MS.gene35768:CDS
TGGGTGTATACAGTTCAATA+TGG 0.480547 2.1:-12854871 MS.gene35768:CDS
CTTCCAACCTGGTTGGGCTA+TGG 0.482251 2.1:-12856303 MS.gene35768:CDS
GGCCGGGAACCTAGCGGTAT+CGG 0.482358 2.1:+12854586 None:intergenic
GGGAGCAAAGACTTAACCTA+TGG 0.510533 2.1:-12855134 MS.gene35768:CDS
TTCCCAAAAGACCAAGCAAT+GGG 0.521563 2.1:-12854890 MS.gene35768:CDS
ACACATTCAAGTGGTATGGC+CGG 0.522372 2.1:+12854569 None:intergenic
TTTGAGGAACTCTTCCAACC+TGG 0.530760 2.1:-12856314 MS.gene35768:CDS
TAGGTGTGAAAATCCTTAGA+TGG 0.533288 2.1:+12855105 None:intergenic
CACATTCAAGTGGTATGGCC+GGG 0.541820 2.1:+12854570 None:intergenic
GACTGTGCATCTCAAACTTG+TGG 0.545064 2.1:-12855922 MS.gene35768:CDS
ACGAACACATTCAAGTGGTA+TGG 0.546680 2.1:+12854565 None:intergenic
AGTGGATGAGACACCAATAA+GGG 0.548753 2.1:-12854945 MS.gene35768:CDS
CTTGTGGAGGGTGATTCTGC+TGG 0.558882 2.1:-12855906 MS.gene35768:CDS
AACACCATTCACATACACAT+TGG 0.567232 2.1:+12855164 None:intergenic
AATATTGTGTAGGTTTCTAG+TGG 0.568671 2.1:-12854963 MS.gene35768:intron
ACTATTGCGCCGATACCGCT+AGG 0.569309 2.1:-12854595 MS.gene35768:CDS
CCTTAGATGGATCAAACCAT+AGG 0.576783 2.1:+12855118 None:intergenic
CAAACCAATGTGTATGTGAA+TGG 0.577035 2.1:-12855168 MS.gene35768:CDS
GTGGTCGTGTGAAAACAGAT+TGG 0.584545 2.1:-12854823 MS.gene35768:CDS
GGTCCATAGCCCAACCAGGT+TGG 0.586297 2.1:+12856300 None:intergenic
GTGTTGTAGATGTCATCTGA+AGG 0.588529 2.1:-12855255 MS.gene35768:intron
AATGTGTATGTGAATGGTGT+TGG 0.599839 2.1:-12855162 MS.gene35768:CDS
AAATGGTCCATAGCCCAACC+AGG 0.607197 2.1:+12856296 None:intergenic
TCTTTGTAGGTAGCAATGAA+AGG 0.607300 2.1:+12854791 None:intergenic
TGTGCATCTCAAACTTGTGG+AGG 0.612180 2.1:-12855919 MS.gene35768:CDS
TTGGTTCCAAAAGATTGAGT+AGG 0.615031 2.1:+12855086 None:intergenic
GTGCTTACACTACTTGACGT+TGG 0.615604 2.1:+12855067 None:intergenic
CTTCCCAAAAGACCAAGCAA+TGG 0.618909 2.1:-12854891 MS.gene35768:CDS
TGAAGATAAGAAATACTGGT+GGG 0.627242 2.1:-12854696 MS.gene35768:CDS
GTGAAGATAAGAAATACTGG+TGG 0.630914 2.1:-12854697 MS.gene35768:CDS
GCAGATGATTGGGCAACACA+AGG 0.635399 2.1:-12854845 MS.gene35768:CDS
ATAGTGAGCTCATTCAACAT+TGG 0.637932 2.1:+12854668 None:intergenic
GTGCATCTCAAACTTGTGGA+GGG 0.658391 2.1:-12855918 MS.gene35768:CDS
CACACAAATTTGGAACACAA+AGG 0.661364 2.1:-12854920 MS.gene35768:CDS
GACTGAGTAAGGTTCACCAG+TGG 0.675614 2.1:+12855191 None:intergenic
TGGTGACGAACACATTCAAG+TGG 0.684113 2.1:+12854560 None:intergenic
GATGATTGGGCAACACAAGG+TGG 0.684504 2.1:-12854842 MS.gene35768:CDS
TGGTATGGCCGGGAACCTAG+CGG 0.737450 2.1:+12854580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCATAATTAAACTTAAA+AGG + chr2.1:12854838-12854857 None:intergenic 15.0%
!! ATAAAAGTCATAATAATTGA+TGG - chr2.1:12855627-12855646 MS.gene35768:intron 15.0%
!! GTTACTTATAGTAAAAAATA+TGG - chr2.1:12854940-12854959 MS.gene35768:CDS 15.0%
!! TATTAGATACTATGAATTAT+TGG + chr2.1:12855610-12855629 None:intergenic 15.0%
!!! TTGTTACATTTGTTTTTTTA+AGG - chr2.1:12854739-12854758 MS.gene35768:CDS 15.0%
!! AAAAAATATGGAAATATTGC+AGG - chr2.1:12854952-12854971 MS.gene35768:CDS 20.0%
!! AAATCAAATTCATTATGAGT+TGG + chr2.1:12855711-12855730 None:intergenic 20.0%
!! AATCAAATTCATTATGAGTT+GGG + chr2.1:12855710-12855729 None:intergenic 20.0%
!! AATGTAATATATTTATGCAC+TGG + chr2.1:12855181-12855200 None:intergenic 20.0%
!! ACAAATGTAACAAACATAAA+TGG + chr2.1:12854732-12854751 None:intergenic 20.0%
!! ATTAATCTCAAAATCTTTGT+AGG + chr2.1:12856164-12856183 None:intergenic 20.0%
!! TAGATCTTATTGTTAATAGA+TGG - chr2.1:12854868-12854887 MS.gene35768:CDS 20.0%
!! TATTAACATATGGATAATGT+AGG + chr2.1:12855897-12855916 None:intergenic 20.0%
!!! GAATTTGATTTTGAGTTTTT+GGG - chr2.1:12855720-12855739 MS.gene35768:intron 20.0%
!!! TGAATTTGATTTTGAGTTTT+TGG - chr2.1:12855719-12855738 MS.gene35768:intron 20.0%
!!! TGTCCTTTTAAGTTTAATTA+TGG - chr2.1:12854832-12854851 MS.gene35768:CDS 20.0%
! AAATTCCATATGGTTATTAG+AGG + chr2.1:12855540-12855559 None:intergenic 25.0%
! AATGTGGAATAAATTCCATA+TGG + chr2.1:12855550-12855569 None:intergenic 25.0%
! ATACTATGAATTATTGGTAC+GGG + chr2.1:12855604-12855623 None:intergenic 25.0%
! GATACTATGAATTATTGGTA+CGG + chr2.1:12855605-12855624 None:intergenic 25.0%
! TAATGAATGCAAGAATCAAT+TGG + chr2.1:12855462-12855481 None:intergenic 25.0%
! TATACATGTGAATATTGTGT+AGG - chr2.1:12855966-12855985 MS.gene35768:CDS 25.0%
! TTCAATGGTTAAAAACAAGT+AGG + chr2.1:12855426-12855445 None:intergenic 25.0%
!! TTTTCTTGATTGCAAATATG+TGG - chr2.1:12855512-12855531 MS.gene35768:intron 25.0%
!!! CTTTGTGTTTTTTGTTTGTT+GGG - chr2.1:12854584-12854603 MS.gene35768:CDS 25.0%
!!! TCTTTGTGTTTTTTGTTTGT+TGG - chr2.1:12854583-12854602 MS.gene35768:CDS 25.0%
AAATTTGTGTGTACCCTTAT+TGG + chr2.1:12856010-12856029 None:intergenic 30.0%
AATATGGAATGCAGATGATT+GGG - chr2.1:12856084-12856103 MS.gene35768:intron 30.0%
ATCAGAGTCATCAACTTATT+TGG - chr2.1:12856296-12856315 MS.gene35768:CDS 30.0%
CAGAATGTGTTCAATACAAT+CGG - chr2.1:12855234-12855253 MS.gene35768:CDS 30.0%
CGGATATATCATCTGATATT+TGG - chr2.1:12855254-12855273 MS.gene35768:intron 30.0%
CTAAGAGCAAGTATATGTTT+GGG - chr2.1:12854989-12855008 MS.gene35768:intron 30.0%
CTCAAACTTGACAATTATTC+TGG - chr2.1:12854691-12854710 MS.gene35768:CDS 30.0%
GTAGTGAAGATAAGAAATAC+TGG - chr2.1:12856239-12856258 MS.gene35768:intron 30.0%
TCAGAGTCATCAACTTATTT+GGG - chr2.1:12856297-12856316 MS.gene35768:CDS 30.0%
TCATAAAGGGCAATAAAATG+TGG + chr2.1:12855566-12855585 None:intergenic 30.0%
TCTAAGAGCAAGTATATGTT+TGG - chr2.1:12854988-12855007 MS.gene35768:intron 30.0%
TGAAGATAAGAAATACTGGT+GGG - chr2.1:12856243-12856262 MS.gene35768:intron 30.0%
TTAAAAGGACATTCAGTTTC+AGG + chr2.1:12854823-12854842 None:intergenic 30.0%
! AATAAGGGTACACACAAATT+TGG - chr2.1:12856009-12856028 MS.gene35768:intron 30.0%
! AATATTGTGTAGGTTTCTAG+TGG - chr2.1:12855976-12855995 MS.gene35768:intron 30.0%
! TCATCAACTTATTTGGGTTA+GGG - chr2.1:12856303-12856322 MS.gene35768:CDS 30.0%
AACACCATTCACATACACAT+TGG + chr2.1:12855778-12855797 None:intergenic 35.0%
AATCTCCTTCATGGACAAAA+TGG + chr2.1:12854663-12854682 None:intergenic 35.0%
AATGTGTATGTGAATGGTGT+TGG - chr2.1:12855777-12855796 MS.gene35768:intron 35.0%
ATAGTGAGCTCATTCAACAT+TGG + chr2.1:12856274-12856293 None:intergenic 35.0%
ATGCAAGAATCAATTGGATG+TGG + chr2.1:12855456-12855475 None:intergenic 35.0%
CAAACCAATGTGTATGTGAA+TGG - chr2.1:12855771-12855790 MS.gene35768:intron 35.0%
CAATATGGAATGCAGATGAT+TGG - chr2.1:12856083-12856102 MS.gene35768:intron 35.0%
CGATTGTATTGAACACATTC+TGG + chr2.1:12855236-12855255 None:intergenic 35.0%
GAGTCACAATCACTCATAAA+GGG + chr2.1:12855579-12855598 None:intergenic 35.0%
GCATTATCATTTGATGTCAC+TGG + chr2.1:12856205-12856224 None:intergenic 35.0%
GGTTGCTTCTTCAAAATTTG+AGG - chr2.1:12854609-12854628 MS.gene35768:CDS 35.0%
GTGAAGATAAGAAATACTGG+TGG - chr2.1:12856242-12856261 MS.gene35768:intron 35.0%
GTTAGCAGTCTTAGTCTATT+AGG + chr2.1:12855382-12855401 None:intergenic 35.0%
GTTTAAGCAAATCTCCTTCA+TGG + chr2.1:12854672-12854691 None:intergenic 35.0%
TAGGTGTGAAAATCCTTAGA+TGG + chr2.1:12855837-12855856 None:intergenic 35.0%
TCTTTGTAGGTAGCAATGAA+AGG + chr2.1:12856151-12856170 None:intergenic 35.0%
TGGGTGTATACAGTTCAATA+TGG - chr2.1:12856068-12856087 MS.gene35768:intron 35.0%
TGGTACCTCTAATAACCATA+TGG - chr2.1:12855532-12855551 MS.gene35768:intron 35.0%
TTGGTTCCAAAAGATTGAGT+AGG + chr2.1:12855856-12855875 None:intergenic 35.0%
! CACACAAATTTGGAACACAA+AGG - chr2.1:12856019-12856038 MS.gene35768:intron 35.0%
! CATTCACATACACATTGGTT+TGG + chr2.1:12855773-12855792 None:intergenic 35.0%
! GTCATCAACTTATTTGGGTT+AGG - chr2.1:12856302-12856321 MS.gene35768:CDS 35.0%
! TTCACACCTACTCAATCTTT+TGG - chr2.1:12855847-12855866 MS.gene35768:intron 35.0%
!! ATGTGAATGGTGTTGGTAAT+AGG - chr2.1:12855784-12855803 MS.gene35768:intron 35.0%
!! TGTGAATGGTGTTGGTAATA+GGG - chr2.1:12855785-12855804 MS.gene35768:intron 35.0%
!!! GTGTTTTTTGTTTGTTGGGT+TGG - chr2.1:12854588-12854607 MS.gene35768:CDS 35.0%
AACTGTATACACCCATTGCT+TGG + chr2.1:12856063-12856082 None:intergenic 40.0%
ACGAACACATTCAAGTGGTA+TGG + chr2.1:12856377-12856396 None:intergenic 40.0%
ACTAGGATGTCTTGTCTCTT+GGG - chr2.1:12854556-12854575 MS.gene35768:CDS 40.0%
AGTGGATGAGACACCAATAA+GGG - chr2.1:12855994-12856013 MS.gene35768:intron 40.0%
CCTATGGTTTGATCCATCTA+AGG - chr2.1:12855821-12855840 MS.gene35768:intron 40.0%
CCTTAGATGGATCAAACCAT+AGG + chr2.1:12855824-12855843 None:intergenic 40.0%
CTATGAATTATTGGTACGGG+TGG + chr2.1:12855601-12855620 None:intergenic 40.0%
GGAGTCACAATCACTCATAA+AGG + chr2.1:12855580-12855599 None:intergenic 40.0%
GGATGTGGATGCAAATTCAA+TGG + chr2.1:12855441-12855460 None:intergenic 40.0%
GTGTTGTAGATGTCATCTGA+AGG - chr2.1:12855684-12855703 MS.gene35768:intron 40.0%
TATGGAAATATTGCAGGTGC+TGG - chr2.1:12854958-12854977 MS.gene35768:intron 40.0%
TTCCCAAAAGACCAAGCAAT+GGG - chr2.1:12856049-12856068 MS.gene35768:intron 40.0%
! ATGGACCATTTTGTCCATGA+AGG - chr2.1:12854655-12854674 MS.gene35768:CDS 40.0%
! TAGTGGATGAGACACCAATA+AGG - chr2.1:12855993-12856012 MS.gene35768:intron 40.0%
! TTGGGTTAGGGCTAATCATA+TGG - chr2.1:12856315-12856334 MS.gene35768:CDS 40.0%
!! ACATTGGTTTGGACTGAGTA+AGG + chr2.1:12855762-12855781 None:intergenic 40.0%
!! ATTGCTTGGTCTTTTGGGAA+GGG + chr2.1:12856049-12856068 None:intergenic 40.0%
ACACATTCAAGTGGTATGGC+CGG + chr2.1:12856373-12856392 None:intergenic 45.0%
CTTCCCAAAAGACCAAGCAA+TGG - chr2.1:12856048-12856067 MS.gene35768:intron 45.0%
GACTAGGATGTCTTGTCTCT+TGG - chr2.1:12854555-12854574 MS.gene35768:CDS 45.0%
GACTGTGCATCTCAAACTTG+TGG - chr2.1:12855017-12855036 MS.gene35768:intron 45.0%
GGGAGCAAAGACTTAACCTA+TGG - chr2.1:12855805-12855824 MS.gene35768:intron 45.0%
GTGCATCTCAAACTTGTGGA+GGG - chr2.1:12855021-12855040 MS.gene35768:intron 45.0%
GTGCTTACACTACTTGACGT+TGG + chr2.1:12855875-12855894 None:intergenic 45.0%
GTGGTCGTGTGAAAACAGAT+TGG - chr2.1:12856116-12856135 MS.gene35768:intron 45.0%
TGTGCATCTCAAACTTGTGG+AGG - chr2.1:12855020-12855039 MS.gene35768:intron 45.0%
TTTGAGGAACTCTTCCAACC+TGG - chr2.1:12854625-12854644 MS.gene35768:CDS 45.0%
! TGGTGACGAACACATTCAAG+TGG + chr2.1:12856382-12856401 None:intergenic 45.0%
!! ACACCCATTGCTTGGTCTTT+TGG + chr2.1:12856055-12856074 None:intergenic 45.0%
!! CACCCATTGCTTGGTCTTTT+GGG + chr2.1:12856054-12856073 None:intergenic 45.0%
!! CATTGCTTGGTCTTTTGGGA+AGG + chr2.1:12856050-12856069 None:intergenic 45.0%
!! TAAATTAAATTATTAACATA+TGG + chr2.1:12855907-12855926 None:intergenic 5.0%
AAATGGTCCATAGCCCAACC+AGG + chr2.1:12854646-12854665 None:intergenic 50.0%
AGGAACTCTTCCAACCTGGT+TGG - chr2.1:12854629-12854648 MS.gene35768:CDS 50.0%
CACATTCAAGTGGTATGGCC+GGG + chr2.1:12856372-12856391 None:intergenic 50.0%
GACTGAGTAAGGTTCACCAG+TGG + chr2.1:12855751-12855770 None:intergenic 50.0%
GATGATTGGGCAACACAAGG+TGG - chr2.1:12856097-12856116 MS.gene35768:intron 50.0%
GCAGATGATTGGGCAACACA+AGG - chr2.1:12856094-12856113 MS.gene35768:intron 50.0%
GGAACTCTTCCAACCTGGTT+GGG - chr2.1:12854630-12854649 MS.gene35768:CDS 50.0%
!! GAGTTTTTGGGCAACACCAC+TGG - chr2.1:12855732-12855751 MS.gene35768:intron 50.0%
CTTCCAACCTGGTTGGGCTA+TGG - chr2.1:12854636-12854655 MS.gene35768:CDS 55.0%
CTTGTGGAGGGTGATTCTGC+TGG - chr2.1:12855033-12855052 MS.gene35768:intron 55.0%
! ACTATTGCGCCGATACCGCT+AGG - chr2.1:12856344-12856363 MS.gene35768:CDS 55.0%
GGTCCATAGCCCAACCAGGT+TGG + chr2.1:12854642-12854661 None:intergenic 60.0%
TGGTATGGCCGGGAACCTAG+CGG + chr2.1:12856362-12856381 None:intergenic 60.0%
CGCCGATACCGCTAGGTTCC+CGG - chr2.1:12856351-12856370 MS.gene35768:CDS 65.0%
GGCCGGGAACCTAGCGGTAT+CGG + chr2.1:12856356-12856375 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 12854553 12856408 12854553 ID=MS.gene35768
chr2.1 mRNA 12854553 12856408 12854553 ID=MS.gene35768.t1;Parent=MS.gene35768
chr2.1 exon 12856249 12856408 12856249 ID=MS.gene35768.t1.exon1;Parent=MS.gene35768.t1
chr2.1 CDS 12856249 12856408 12856249 ID=cds.MS.gene35768.t1;Parent=MS.gene35768.t1
chr2.1 exon 12855887 12855987 12855887 ID=MS.gene35768.t1.exon2;Parent=MS.gene35768.t1
chr2.1 CDS 12855887 12855987 12855887 ID=cds.MS.gene35768.t1;Parent=MS.gene35768.t1
chr2.1 exon 12855075 12855268 12855075 ID=MS.gene35768.t1.exon3;Parent=MS.gene35768.t1
chr2.1 CDS 12855075 12855268 12855075 ID=cds.MS.gene35768.t1;Parent=MS.gene35768.t1
chr2.1 exon 12854553 12854973 12854553 ID=MS.gene35768.t1.exon4;Parent=MS.gene35768.t1
chr2.1 CDS 12854553 12854973 12854553 ID=cds.MS.gene35768.t1;Parent=MS.gene35768.t1
Gene Sequence

>MS.gene35768

ATGACTAGGATGTCTTGTCTCTTGGGACTTTCTTTGTGTTTTTTGTTTGTTGGGTTGGTTGCTTCTTCAAAATTTGAGGAACTCTTCCAACCTGGTTGGGCTATGGACCATTTTGTCCATGAAGGAGATTTGCTTAAACTCAAACTTGACAATTATTCTGGTAATTAACTAACTAACCATTTATGTTTGTTACATTTGTTTTTTTAAGGTTGCAAGAATGAGACATTATTAAAAAAAAAAAAAACATTTTTGTATTAAGTATTGTTTCCTGAAACTGAATGTCCTTTTAAGTTTAATTATGGATTATTTAAAGCTTAGATCTTATTGTTAATAGATGGTTTAATAAATGTTATAATGATGTACATTCATGATTAATTAATTATTTGTGTTACTTATAGTAAAAAATATGGAAATATTGCAGGTGCTGGATTTCAATCTAAGAGCAAGTATATGTTTGGGAAAGTGACTGTGCATCTCAAACTTGTGGAGGGTGATTCTGCTGGAACTGTAACTGCTTTCTATGTAAGCAAAAATATTATAAATATAAATCAGCTTTTACTTTAATTTGCTCTTAGTTCTCTTGTTAATATGTTGATATGAAATTTAATAGTATTATTAGTACTCACCAGTGCATAAATATATTACATTTTGTTAAGAAACAATTATCAGTGTATCATTAACCAGAATGTGTTCAATACAATCGGATATATCATCTGATATTTGGACATAAACAAACTCAATATTAGAGTTTACATAAAAATTCATATATAAATTTATAATGTGCATAAATACTAATCAATACATTGAACATTTGTTAAATGTGACACCTAATAGACTAAGACTGCTAACAGAGCTATTGAGTGCTATCTACCTACTTGTTTTTAACCATTGAATTTGCATCCACATCCAATTGATTCTTGCATTCATTATCTTTGTCGCTATATCAATCTAGCAACTAATTTTCTTGATTGCAAATATGTGGTACCTCTAATAACCATATGGAATTTATTCCACATTTTATTGCCCTTTATGAGTGATTGTGACTCCACCCGTACCAATAATTCATAGTATCTAATAAAAGTCATAATAATTGATGGTATCTAACTTTGAAATTTGATTCTTATAATTTTTGTGTTGTAGATGTCATCTGAAGGCCCAACTCATAATGAATTTGATTTTGAGTTTTTGGGCAACACCACTGGTGAACCTTACTCAGTCCAAACCAATGTGTATGTGAATGGTGTTGGTAATAGGGAGCAAAGACTTAACCTATGGTTTGATCCATCTAAGGATTTTCACACCTACTCAATCTTTTGGAACCAACGTCAAGTAGTGTAAGCACCTACATTATCCATATGTTAATAATTTAATTTAATCTAATAAACTTTAATTAATTATTATTCTAACATATTTTATACATGTGAATATTGTGTAGGTTTCTAGTGGATGAGACACCAATAAGGGTACACACAAATTTGGAACACAAAGGAATTCCCTTCCCAAAAGACCAAGCAATGGGTGTATACAGTTCAATATGGAATGCAGATGATTGGGCAACACAAGGTGGTCGTGTGAAAACAGATTGGACTCATGCACCTTTCATTGCTACCTACAAAGATTTTGAGATTAATGCTTGTGAAGTTGCTGTGCCAGTGACATCAAATGATAATGCTAAGAAATGTGCTAGTAGTGAAGATAAGAAATACTGGTGGGATGAACCAATGTTGAATGAGCTCACTATTCATCAGAGTCATCAACTTATTTGGGTTAGGGCTAATCATATGGTTTATGACTATTGCGCCGATACCGCTAGGTTCCCGGCCATACCACTTGAATGTGTTCGTCACCACCACTAG
Protein sequence

>MS.gene35768.t1

MTRMSCLLGLSLCFLFVGLVASSKFEELFQPGWAMDHFVHEGDLLKLKLDNYSGAGFQSKSKYMFGKVTVHLKLVEGDSAGTVTAFYMSSEGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPSKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWTHAPFIATYKDFEINACEVAVPVTSNDNAKKCASSEDKKYWWDEPMLNELTIHQSHQLIWVRANHMVYDYCADTARFPAIPLECVRHHH