Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35817.t1 | XP_003596988.1 | 99.6 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.00E+00 | 1969.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35817.t1 | Q9SIB9 | 85.8 | 959 | 131 | 2 | 26 | 979 | 32 | 990 | 0.0e+00 | 1687.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35817.t1 | G7ITZ5 | 99.6 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.0e+00 | 1969.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052361 | MS.gene35817 | 0.82619 | 3.11E-54 | -1.69E-46 |
MS.gene054016 | MS.gene35817 | 0.849437 | 3.24E-60 | -1.69E-46 |
MS.gene054017 | MS.gene35817 | 0.99869 | 4.24E-273 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene35817 | MS.gene99212 | PPI |
MS.gene35817 | MS.gene42646 | PPI |
MS.gene35817 | MS.gene011805 | PPI |
MS.gene35817 | MS.gene014952 | PPI |
MS.gene35817 | MS.gene041065 | PPI |
MS.gene32746 | MS.gene35817 | PPI |
MS.gene56790 | MS.gene35817 | PPI |
MS.gene35817 | MS.gene90508 | PPI |
MS.gene35817 | MS.gene02695 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35817.t1 | MTR_2g088360 | 99.591 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.0 | 2018 |
MS.gene35817.t1 | MTR_4g048190 | 89.566 | 968 | 92 | 2 | 15 | 979 | 18 | 979 | 0.0 | 1805 |
MS.gene35817.t1 | MTR_5g022940 | 84.710 | 896 | 136 | 1 | 83 | 977 | 2 | 897 | 0.0 | 1609 |
MS.gene35817.t1 | MTR_1g075520 | 76.275 | 902 | 206 | 2 | 79 | 979 | 1 | 895 | 0.0 | 1445 |
MS.gene35817.t1 | MTR_5g022940 | 85.246 | 793 | 117 | 0 | 185 | 977 | 1 | 793 | 0.0 | 1442 |
MS.gene35817.t1 | MTR_2g067620 | 85.962 | 577 | 41 | 6 | 136 | 693 | 134 | 689 | 0.0 | 960 |
MS.gene35817.t1 | MTR_2g067620 | 81.325 | 166 | 1 | 1 | 844 | 979 | 700 | 865 | 8.76e-76 | 267 |
MS.gene35817.t1 | MTR_4g115490 | 70.833 | 144 | 16 | 2 | 660 | 802 | 154 | 272 | 1.58e-56 | 197 |
MS.gene35817.t1 | MTR_4g074000 | 44.295 | 149 | 69 | 3 | 782 | 917 | 1 | 148 | 4.01e-25 | 105 |
MS.gene35817.t1 | MTR_1g045750 | 23.810 | 462 | 251 | 16 | 205 | 651 | 122 | 497 | 2.93e-16 | 83.6 |
MS.gene35817.t1 | MTR_1g073200 | 26.582 | 395 | 238 | 13 | 264 | 651 | 170 | 519 | 4.68e-14 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35817.t1 | AT2G05710 | 87.460 | 933 | 116 | 1 | 48 | 979 | 58 | 990 | 0.0 | 1724 |
MS.gene35817.t1 | AT4G26970 | 80.126 | 951 | 189 | 0 | 29 | 979 | 45 | 995 | 0.0 | 1619 |
MS.gene35817.t1 | AT4G35830 | 84.281 | 897 | 141 | 0 | 83 | 979 | 2 | 898 | 0.0 | 1605 |
MS.gene35817.t1 | AT4G35830 | 84.654 | 795 | 122 | 0 | 185 | 979 | 1 | 795 | 0.0 | 1432 |
MS.gene35817.t1 | AT5G54950 | 75.439 | 57 | 14 | 0 | 902 | 958 | 1 | 57 | 1.22e-24 | 98.6 |
MS.gene35817.t1 | AT4G13430 | 25.909 | 440 | 235 | 15 | 225 | 651 | 140 | 501 | 1.21e-17 | 87.8 |
Find 298 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAATTCTCTCAAAACTTT+TGG | 0.200994 | 2.1:-13413598 | None:intergenic |
GCCTATTGCCTGTTGAATTT+TGG | 0.202495 | 2.1:+13412642 | MS.gene35817:CDS |
GCCAATATGTCTCCTGAATA+TGG | 0.241612 | 2.1:+13408789 | MS.gene35817:CDS |
AAGCCTGGTGGTGGTGAATT+TGG | 0.262576 | 2.1:+13407013 | MS.gene35817:CDS |
ACAAGTCTTGCTCCTGGTTC+TGG | 0.266793 | 2.1:+13410351 | MS.gene35817:CDS |
AGGGCAGTATCTTGCCTCTT+TGG | 0.272951 | 2.1:-13409192 | None:intergenic |
ATGTTTACTTGAGGGATATT+TGG | 0.273088 | 2.1:+13412303 | MS.gene35817:CDS |
TAACTGTCACACAAATTCTT+AGG | 0.279077 | 2.1:+13408603 | MS.gene35817:CDS |
ACCACATGTATTGGCAATTC+AGG | 0.281196 | 2.1:+13410594 | MS.gene35817:CDS |
CTCGTTGTTCCTCCTGGTTC+TGG | 0.283190 | 2.1:+13408023 | MS.gene35817:CDS |
CCCATGGTTGCTCCATATTC+AGG | 0.293010 | 2.1:-13408801 | None:intergenic |
GAGTCGCTGGATGGGGTGTT+GGG | 0.293228 | 2.1:+13408268 | MS.gene35817:CDS |
GAGAATTCATCGCAGTAATT+TGG | 0.293240 | 2.1:+13413611 | MS.gene35817:CDS |
ACTTTGTCTTGTGCTTCTTT+TGG | 0.305193 | 2.1:-13409995 | None:intergenic |
GAATGCAGTGCAGGCTAATA+TGG | 0.306167 | 2.1:+13407929 | MS.gene35817:CDS |
AAGAAGGACTTCAACTCTTA+TGG | 0.309032 | 2.1:+13412756 | MS.gene35817:CDS |
ATTCCCCTTTGCTTCAAATC+TGG | 0.321664 | 2.1:+13413648 | MS.gene35817:CDS |
GTTGTGGCTTATGCTCTTGC+TGG | 0.322295 | 2.1:+13410903 | MS.gene35817:CDS |
GGAGTCGCTGGATGGGGTGT+TGG | 0.326677 | 2.1:+13408267 | MS.gene35817:CDS |
AGTCCCAGCTGTTGTTGATT+TGG | 0.331621 | 2.1:+13407528 | MS.gene35817:CDS |
TGACAGAGATACAAGGCTTC+AGG | 0.333044 | 2.1:+13413360 | MS.gene35817:intron |
CAACATCTGCTTTAGTAACT+TGG | 0.337431 | 2.1:-13407316 | None:intergenic |
TCCATATTCAGGAGACATAT+TGG | 0.356776 | 2.1:-13408790 | None:intergenic |
CAATTTGTTTGCCCTGAGAT+AGG | 0.357810 | 2.1:-13408985 | None:intergenic |
CTTAGGAAACATGGTGTTGT+AGG | 0.358938 | 2.1:+13408620 | MS.gene35817:CDS |
GCTTCTGCTATCTCAGAAAA+TGG | 0.360827 | 2.1:+13410636 | MS.gene35817:CDS |
TTACAATACCTCAAGCTAAC+TGG | 0.361768 | 2.1:+13408849 | MS.gene35817:CDS |
GGCTTCAATATTGTTGGATT+CGG | 0.364215 | 2.1:+13410567 | MS.gene35817:CDS |
ACCCTTGGCTGCCCAATCCC+TGG | 0.364580 | 2.1:-13413430 | None:intergenic |
CATCGCAAGATCGCCACTTC+CGG | 0.365943 | 2.1:+13405908 | MS.gene35817:CDS |
AAAACCTCTCCTTGTTTCTC+TGG | 0.366881 | 2.1:-13407962 | None:intergenic |
GTGAATTATCGTTGGCTGAC+AGG | 0.368225 | 2.1:+13408757 | MS.gene35817:CDS |
GCCCTCAAAATTACGGTTCC+CGG | 0.379970 | 2.1:-13410832 | None:intergenic |
TCTAGAAAGAGGAAATAGTT+TGG | 0.380399 | 2.1:-13405708 | None:intergenic |
CTCTTTGGTCCTGAGATACA+TGG | 0.380632 | 2.1:-13409177 | None:intergenic |
TACATATGAAGCTATTACTA+AGG | 0.380840 | 2.1:+13412482 | MS.gene35817:CDS |
GAGCAAGGCTTCAATATTGT+TGG | 0.381018 | 2.1:+13410561 | MS.gene35817:CDS |
GATGGAGTCACGGCGTCCTT+TGG | 0.386324 | 2.1:+13405825 | MS.gene35817:CDS |
CAGTGGAAGTTCCAGGGATT+GGG | 0.390267 | 2.1:+13413419 | MS.gene35817:CDS |
GGTGGAACGGGCGGCGTTAG+CGG | 0.391565 | 2.1:-13405795 | None:intergenic |
TGCCTCCCCTCCATTGGTTG+TGG | 0.396095 | 2.1:+13410887 | MS.gene35817:CDS |
CATGCCACCATTGTGCTGGC+TGG | 0.398424 | 2.1:+13413384 | MS.gene35817:CDS |
GCCCATCAATCATAGTTGTA+TGG | 0.399890 | 2.1:-13408242 | None:intergenic |
GGCGTTAGCGGCGGCGGATG+AGG | 0.400584 | 2.1:-13405783 | None:intergenic |
ATGGTGTTACCCGGTGTTGT+TGG | 0.400750 | 2.1:+13408527 | MS.gene35817:CDS |
CTTTGCTCCAGGCAATGGTA+TGG | 0.401240 | 2.1:+13408734 | MS.gene35817:intron |
AGTCGCTGGATGGGGTGTTG+GGG | 0.406574 | 2.1:+13408269 | MS.gene35817:CDS |
TGTTGGAATGTGCACAGTCT+TGG | 0.407414 | 2.1:-13412868 | None:intergenic |
GTTGTTGGGTTCAAGTTGTC+TGG | 0.407565 | 2.1:+13408542 | MS.gene35817:CDS |
GTTGGAATGTGCACAGTCTT+GGG | 0.410552 | 2.1:-13412867 | None:intergenic |
TGAAAGAAATGAAGTCTGAT+TGG | 0.410840 | 2.1:+13409313 | MS.gene35817:CDS |
TCTCTCAATGATCCGAGAAT+TGG | 0.411423 | 2.1:+13407055 | MS.gene35817:CDS |
GTAGCATCTGCTGTGCTGTC+CGG | 0.413083 | 2.1:+13410813 | MS.gene35817:CDS |
TGTAATGTTACATGATCTAC+AGG | 0.417998 | 2.1:-13408831 | None:intergenic |
CAGGTCAATCTTGAATATCT+TGG | 0.418183 | 2.1:+13408159 | MS.gene35817:intron |
CGCAGTAATTTGGTAGGAAT+GGG | 0.418887 | 2.1:+13413621 | MS.gene35817:CDS |
CTTGTCAAGTTTCCCTTGAA+AGG | 0.419364 | 2.1:-13406983 | None:intergenic |
GTCGCTGGATGGGGTGTTGG+GGG | 0.419966 | 2.1:+13408270 | MS.gene35817:CDS |
AATACGGCAGTGGAAGTTCC+AGG | 0.422241 | 2.1:+13413412 | MS.gene35817:CDS |
AGGGCATGCCACCATTGTGC+TGG | 0.422305 | 2.1:+13413380 | MS.gene35817:CDS |
CTTGTTTACAATTCGTATGT+TGG | 0.422861 | 2.1:-13412823 | None:intergenic |
TCCCATACAACTATGATTGA+TGG | 0.423307 | 2.1:+13408240 | MS.gene35817:CDS |
AAATTCACCACCACCAGGCT+TGG | 0.423386 | 2.1:-13407011 | None:intergenic |
CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 2.1:+13410104 | MS.gene35817:CDS |
CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 2.1:+13408210 | MS.gene35817:CDS |
AAGACTGTGCACATTCCAAC+AGG | 0.426168 | 2.1:+13412870 | MS.gene35817:CDS |
TGATCAACAACTAGATCAAC+AGG | 0.426916 | 2.1:-13407876 | None:intergenic |
TACTGTCACCAAAATTCAAC+AGG | 0.429302 | 2.1:-13412650 | None:intergenic |
TTTCCACCCCACGCTGCATA+AGG | 0.429814 | 2.1:-13412734 | None:intergenic |
CTATCTTGCCTCCCCTCCAT+TGG | 0.433525 | 2.1:+13410881 | MS.gene35817:CDS |
CCGGGTAACACCATGCTCAT+AGG | 0.436873 | 2.1:-13408518 | None:intergenic |
ACGGGCGGCGTTAGCGGCGG+CGG | 0.437741 | 2.1:-13405789 | None:intergenic |
AGCCAAGGGTCCCATGCTAT+TGG | 0.439651 | 2.1:+13413443 | MS.gene35817:CDS |
CTGCTGAGAAGCTGTATTCA+TGG | 0.439794 | 2.1:+13412535 | MS.gene35817:CDS |
ACCAAAATTCAACAGGCAAT+AGG | 0.439902 | 2.1:-13412643 | None:intergenic |
TCGCAGTAATTTGGTAGGAA+TGG | 0.441035 | 2.1:+13413620 | MS.gene35817:CDS |
TGGGCTTGGAGTCGCTGGAT+GGG | 0.441530 | 2.1:+13408260 | MS.gene35817:CDS |
TCGTGAATGTATGTTGAGTT+GGG | 0.443228 | 2.1:-13412561 | None:intergenic |
GGCTGGTCTTGTTGCAAAGA+AGG | 0.443338 | 2.1:+13410126 | MS.gene35817:CDS |
AATATGCTCGTTGTTCCTCC+TGG | 0.443434 | 2.1:+13408017 | MS.gene35817:CDS |
GACTTTGAAAAGGAGCCGTT+AGG | 0.444702 | 2.1:+13412260 | MS.gene35817:CDS |
ATCTGAGGACGGAGAGAGAC+AGG | 0.445324 | 2.1:-13405854 | None:intergenic |
AAGCTATTGAACGGCGAAGT+TGG | 0.446095 | 2.1:+13412843 | MS.gene35817:CDS |
CCATCGGTTAACGGTGGAAC+GGG | 0.447523 | 2.1:-13405807 | None:intergenic |
GGCGCATGACTTAGGTTTGA+AGG | 0.447741 | 2.1:+13410147 | MS.gene35817:CDS |
GCAGTGGAAGTTCCAGGGAT+TGG | 0.448099 | 2.1:+13413418 | MS.gene35817:CDS |
AGCTGGTGAAAATCCTTTCA+AGG | 0.448607 | 2.1:+13406970 | MS.gene35817:intron |
GCAAAGAAGGCGCATGACTT+AGG | 0.450258 | 2.1:+13410139 | MS.gene35817:CDS |
CAATGATAGAGGCCTATCTC+AGG | 0.454653 | 2.1:+13408973 | MS.gene35817:CDS |
TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 2.1:+13408211 | MS.gene35817:CDS |
GGGCTTGGAGTCGCTGGATG+GGG | 0.456615 | 2.1:+13408261 | MS.gene35817:CDS |
CTCGTGAATGTATGTTGAGT+TGG | 0.457019 | 2.1:-13412562 | None:intergenic |
GTTGCAAAATTCGATTTCCA+TGG | 0.457117 | 2.1:+13410016 | MS.gene35817:CDS |
ATGGGCTTGGAGTCGCTGGA+TGG | 0.459040 | 2.1:+13408259 | MS.gene35817:CDS |
TAGCATCTGCTGTGCTGTCC+GGG | 0.459362 | 2.1:+13410814 | MS.gene35817:CDS |
GGTGAGGATGCTGACACCTT+GGG | 0.460474 | 2.1:+13413669 | MS.gene35817:CDS |
CAAGCCAAATCAACAACAGC+TGG | 0.461130 | 2.1:-13407532 | None:intergenic |
TCACGAGCCTCCATACTTCA+AGG | 0.461990 | 2.1:+13412578 | MS.gene35817:CDS |
CCACATGTATTGGCAATTCA+GGG | 0.462224 | 2.1:+13410595 | MS.gene35817:CDS |
TTTGCTCCAGGCAATGGTAT+GGG | 0.463247 | 2.1:+13408735 | MS.gene35817:intron |
TGGTGTTACCCGGTGTTGTT+GGG | 0.465294 | 2.1:+13408528 | MS.gene35817:CDS |
CTTGTAATTCGTTCCACATA+GGG | 0.465949 | 2.1:-13412509 | None:intergenic |
GCCTGCTCGTGTTCTTCTCC+AGG | 0.467838 | 2.1:+13407394 | MS.gene35817:CDS |
CCATCCTTTCCTGTCCCTAA+CGG | 0.468008 | 2.1:-13412275 | None:intergenic |
CTCACCAGATTTGAAGCAAA+GGG | 0.468492 | 2.1:-13413652 | None:intergenic |
GTATTCTATCAGAATTCTCC+TGG | 0.469390 | 2.1:+13407265 | MS.gene35817:CDS |
TGATAACAAAGTGGGATTCA+AGG | 0.470540 | 2.1:+13409347 | MS.gene35817:CDS |
GGCTTATGCTCTTGCTGGCA+CGG | 0.470773 | 2.1:+13410908 | MS.gene35817:CDS |
GCTGACACCTTGGGATTGAC+TGG | 0.471027 | 2.1:+13413678 | MS.gene35817:CDS |
AGGAGACATATTGGCAATAG+TGG | 0.471422 | 2.1:-13408781 | None:intergenic |
TACCAATAGCATGGGACCCT+TGG | 0.471976 | 2.1:-13413445 | None:intergenic |
ATGGATCCTCCTGGACCTCA+TGG | 0.472294 | 2.1:+13412609 | MS.gene35817:CDS |
CAGTTGTGACGGTGACATCT+TGG | 0.472921 | 2.1:-13413755 | None:intergenic |
AGAACACGAGCAGGCTTGAA+AGG | 0.473996 | 2.1:-13407386 | None:intergenic |
ATGGTCATGTCCTTGAAGTA+TGG | 0.475691 | 2.1:-13412588 | None:intergenic |
GACAGAGATACAAGGCTTCA+GGG | 0.477290 | 2.1:+13413361 | MS.gene35817:intron |
ACAACTATGATTGATGGGCT+TGG | 0.477538 | 2.1:+13408246 | MS.gene35817:CDS |
TTCGGCTGTACCACATGTAT+TGG | 0.477825 | 2.1:+13410585 | MS.gene35817:CDS |
TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 2.1:-13408216 | None:intergenic |
GAAAAGGAGCCGTTAGGGAC+AGG | 0.481014 | 2.1:+13412266 | MS.gene35817:CDS |
CACAATACCTTATGCAGCGT+GGG | 0.484741 | 2.1:+13412727 | MS.gene35817:CDS |
GCACTCGGCCCTCAAAATTA+CGG | 0.485012 | 2.1:-13410839 | None:intergenic |
AATGACTTCACTTCTTAATG+AGG | 0.487043 | 2.1:-13414052 | None:intergenic |
GCATACTTCCCTATGTCATC+AGG | 0.488632 | 2.1:+13414027 | MS.gene35817:CDS |
GAGGAACAACGAGCATATTA+CGG | 0.489483 | 2.1:-13408013 | None:intergenic |
TGCATAAGGTATTGTGCAGC+AGG | 0.491012 | 2.1:-13412720 | None:intergenic |
GAAGCAGAGGCAGCAATGCT+TGG | 0.491053 | 2.1:+13408297 | MS.gene35817:CDS |
GCGGGAGATCGAACGGGAGA+AGG | 0.492838 | 2.1:-13405755 | None:intergenic |
TGGCAAGAATGTTTACTTGA+GGG | 0.494069 | 2.1:+13412295 | MS.gene35817:CDS |
AAGGTCAGAGAATGCAGTGC+AGG | 0.494971 | 2.1:+13407920 | MS.gene35817:CDS |
CCTTTGCTTCAAATCTGGTG+AGG | 0.494973 | 2.1:+13413653 | MS.gene35817:CDS |
ACATAAAGCTTCTCCCCTGT+TGG | 0.495420 | 2.1:-13412885 | None:intergenic |
TTCCAGGGATTGGGCAGCCA+AGG | 0.496253 | 2.1:+13413428 | MS.gene35817:CDS |
TCAGACTTCATTTCTTTCAA+AGG | 0.497520 | 2.1:-13409309 | None:intergenic |
GCCGTGACTCCATCGGTTAA+CGG | 0.498431 | 2.1:-13405816 | None:intergenic |
ATTGATGGGCTTGGAGTCGC+TGG | 0.499266 | 2.1:+13408255 | MS.gene35817:CDS |
TTCTAATAAGATCAATCCTC+TGG | 0.501652 | 2.1:+13407588 | MS.gene35817:CDS |
CCCATCAATCATAGTTGTAT+GGG | 0.501899 | 2.1:-13408241 | None:intergenic |
TGTCAGGCAACACGTTGGAT+TGG | 0.501963 | 2.1:-13412449 | None:intergenic |
CACTTCTTCCAGTTAGCTTG+AGG | 0.504054 | 2.1:-13408857 | None:intergenic |
GCATGCGTGATGCTATGAAT+AGG | 0.504170 | 2.1:+13407554 | MS.gene35817:CDS |
AGAGGCAGCAATGCTTGGCC+AGG | 0.505091 | 2.1:+13408302 | MS.gene35817:CDS |
TGGTGAGGATGCTGACACCT+TGG | 0.505357 | 2.1:+13413668 | MS.gene35817:CDS |
TCCTTCACACCATGAGGTCC+AGG | 0.505579 | 2.1:-13412618 | None:intergenic |
GGTTGACATTGACTTTGAAA+AGG | 0.506476 | 2.1:+13412250 | MS.gene35817:intron |
GCAATGATGAAGTTATGTCT+AGG | 0.507216 | 2.1:+13412790 | MS.gene35817:CDS |
TATGTACTTCTGAACATGTC+AGG | 0.508691 | 2.1:-13412465 | None:intergenic |
TGAATTATCGTTGGCTGACA+GGG | 0.508821 | 2.1:+13408758 | MS.gene35817:CDS |
CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 2.1:+13410109 | MS.gene35817:CDS |
AATTCACCACCACCAGGCTT+GGG | 0.510953 | 2.1:-13407010 | None:intergenic |
TGTGACGGTGACATCTTGGC+CGG | 0.511650 | 2.1:-13413751 | None:intergenic |
GCAGCGTGGGGTGGAAAAGA+AGG | 0.512014 | 2.1:+13412740 | MS.gene35817:CDS |
CACCTGTGCAATTTCTTCAG+TGG | 0.512662 | 2.1:-13412330 | None:intergenic |
TTAGGAAACATGGTGTTGTA+GGG | 0.512869 | 2.1:+13408621 | MS.gene35817:CDS |
TCCTTGTTAATATTTCCAGC+TGG | 0.513378 | 2.1:-13412693 | None:intergenic |
CGATGATACTGTTCGATGAA+AGG | 0.513427 | 2.1:-13405890 | None:intergenic |
AGGAGAATTCTGATAGAATA+CGG | 0.514211 | 2.1:-13407263 | None:intergenic |
CCCATACAACTATGATTGAT+GGG | 0.514361 | 2.1:+13408241 | MS.gene35817:CDS |
GTGAAAGCGGGAGATCGAAC+GGG | 0.517009 | 2.1:-13405761 | None:intergenic |
AAAATCAGCGAGATAAAGCC+CGG | 0.517821 | 2.1:+13413732 | MS.gene35817:CDS |
AATTACGAATGGCAGATTCC+AGG | 0.519101 | 2.1:-13407283 | None:intergenic |
CAATGATGAAGTTATGTCTA+GGG | 0.519169 | 2.1:+13412791 | MS.gene35817:CDS |
CATGAATACAGCTTCTCAGC+AGG | 0.519200 | 2.1:-13412534 | None:intergenic |
GAAGAGAAGGTTCTAGAAAG+AGG | 0.522793 | 2.1:-13405719 | None:intergenic |
TCTTGTCTTGATAACAAAGT+GGG | 0.524984 | 2.1:+13409339 | MS.gene35817:CDS |
ACTGATCACATTTCTCCAGC+TGG | 0.526190 | 2.1:+13412678 | MS.gene35817:CDS |
ACTTGTAATTCGTTCCACAT+AGG | 0.526220 | 2.1:-13412510 | None:intergenic |
GGAACGGGCGGCGTTAGCGG+CGG | 0.527362 | 2.1:-13405792 | None:intergenic |
ATCGGAGATTATACCGGAAG+TGG | 0.530020 | 2.1:-13405921 | None:intergenic |
ACTTTGAAAAGGAGCCGTTA+GGG | 0.531710 | 2.1:+13412261 | MS.gene35817:CDS |
ATTGTTTGTCGACTATAATG+AGG | 0.532842 | 2.1:+13409004 | MS.gene35817:CDS |
TTGACAAGTCTTCCCAAGCC+TGG | 0.533973 | 2.1:+13406998 | MS.gene35817:CDS |
GAACACGAGCAGGCTTGAAA+GGG | 0.534295 | 2.1:-13407385 | None:intergenic |
TTACTAAGGGTAACCCTATG+TGG | 0.535614 | 2.1:+13412496 | MS.gene35817:CDS |
GCGGCGGATGAGGTGAAAGC+GGG | 0.536134 | 2.1:-13405773 | None:intergenic |
TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 2.1:+13410103 | MS.gene35817:CDS |
GAAGTCGAACCATGTATCTC+AGG | 0.536379 | 2.1:+13409168 | MS.gene35817:CDS |
GAATTGGAGTACTTCAACCA+TGG | 0.536629 | 2.1:+13414002 | MS.gene35817:CDS |
AATGAGGTTCCTGATGACAT+AGG | 0.539122 | 2.1:-13414036 | None:intergenic |
ATACCTCTGAAGTAGATACT+TGG | 0.540471 | 2.1:-13410382 | None:intergenic |
TCCTGAATATGGAGCAACCA+TGG | 0.542223 | 2.1:+13408800 | MS.gene35817:CDS |
TGTGCAATTTCTTCAGTGGA+TGG | 0.544671 | 2.1:-13412326 | None:intergenic |
CATAGGGAAGTATGCCTCCA+TGG | 0.545905 | 2.1:-13414019 | None:intergenic |
GTGACGGTGACATCTTGGCC+GGG | 0.548359 | 2.1:-13413750 | None:intergenic |
TCCTGGACCTCATGGTGTGA+AGG | 0.548498 | 2.1:+13412617 | MS.gene35817:CDS |
CCCGTTCCACCGTTAACCGA+TGG | 0.550117 | 2.1:+13405807 | MS.gene35817:CDS |
GTCACCGTCACAACTGATAC+CGG | 0.550262 | 2.1:+13413762 | MS.gene35817:CDS |
TTAGCTCAGCTGGCTGCCCA+TGG | 0.551057 | 2.1:-13410033 | None:intergenic |
TGTTGAAAAGATTATTGACT+GGG | 0.551841 | 2.1:+13407334 | MS.gene35817:CDS |
AAGATAGTTAGCGCGTGTCA+AGG | 0.552401 | 2.1:-13410865 | None:intergenic |
TGCTGAGAAGCTGTATTCAT+GGG | 0.552702 | 2.1:+13412536 | MS.gene35817:CDS |
GTGCTGGCTGGAGCTGAATA+CGG | 0.552786 | 2.1:+13413396 | MS.gene35817:CDS |
AGTCTTCCCAAGCCTGGTGG+TGG | 0.553048 | 2.1:+13407004 | MS.gene35817:CDS |
TCATGGCAGACCTCATGATC+GGG | 0.553602 | 2.1:+13409284 | MS.gene35817:intron |
ATGAGGTTCCTGATGACATA+GGG | 0.554400 | 2.1:-13414035 | None:intergenic |
CTCATGGCAGACCTCATGAT+CGG | 0.554707 | 2.1:+13409283 | MS.gene35817:intron |
AGAGCATAAGCCACAACCAA+TGG | 0.554884 | 2.1:-13410897 | None:intergenic |
CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 2.1:-13410109 | None:intergenic |
GGTGAAAGCGGGAGATCGAA+CGG | 0.559834 | 2.1:-13405762 | None:intergenic |
ACGAGAGAGAGGTGAAGAGA+AGG | 0.559856 | 2.1:-13405732 | None:intergenic |
ATGTTGAAAAGATTATTGAC+TGG | 0.559971 | 2.1:+13407333 | MS.gene35817:CDS |
AACTTGAACCCAACAACACC+GGG | 0.563808 | 2.1:-13408536 | None:intergenic |
ACCTGGAGAAGAACACGAGC+AGG | 0.566281 | 2.1:-13407395 | None:intergenic |
ATGAGGTCCAGGAGGATCCA+TGG | 0.567055 | 2.1:-13412607 | None:intergenic |
GAAATTGTCACAATTACGAA+TGG | 0.569548 | 2.1:-13407294 | None:intergenic |
GACATGACCATGGATCCTCC+TGG | 0.570495 | 2.1:+13412600 | MS.gene35817:CDS |
CAGTTCAAGTTGATGTAGCA+AGG | 0.570690 | 2.1:+13407901 | MS.gene35817:CDS |
CCTATGAGCATGGTGTTACC+CGG | 0.571735 | 2.1:+13408518 | MS.gene35817:CDS |
AATGTAGGTGGCAATGATAG+AGG | 0.571862 | 2.1:+13408962 | MS.gene35817:intron |
TCTCATCTGACAGAGATACA+AGG | 0.572796 | 2.1:+13413353 | MS.gene35817:intron |
TTGCAAAATTCGATTTCCAT+GGG | 0.572852 | 2.1:+13410017 | MS.gene35817:CDS |
CGTGATGCTATGAATAGGCT+TGG | 0.573806 | 2.1:+13407559 | MS.gene35817:CDS |
TTTCCAAATTCACCACCACC+AGG | 0.574063 | 2.1:-13407016 | None:intergenic |
TGGTGTTACAGCAACTGACT+TGG | 0.574164 | 2.1:+13408577 | MS.gene35817:CDS |
CCTGAATATGGAGCAACCAT+GGG | 0.574382 | 2.1:+13408801 | MS.gene35817:CDS |
AAAGGACGCCGTGACTCCAT+CGG | 0.575808 | 2.1:-13405823 | None:intergenic |
GGAGCGACAGCTCTGATCTG+AGG | 0.576907 | 2.1:-13405869 | None:intergenic |
ATACCTTATGCAGCGTGGGG+TGG | 0.578429 | 2.1:+13412731 | MS.gene35817:CDS |
GCTGGAGCTGAATACGGCAG+TGG | 0.580134 | 2.1:+13413402 | MS.gene35817:CDS |
TTGGAATGTGCACAGTCTTG+GGG | 0.580481 | 2.1:-13412866 | None:intergenic |
CCTCACCAGATTTGAAGCAA+AGG | 0.584378 | 2.1:-13413653 | None:intergenic |
ATGGCAAGAATGTTTACTTG+AGG | 0.585412 | 2.1:+13412294 | MS.gene35817:CDS |
AACTCTTATGGAAGCCGTCG+TGG | 0.585544 | 2.1:+13412768 | MS.gene35817:CDS |
ATTCATCGCAGTAATTTGGT+AGG | 0.585715 | 2.1:+13413615 | MS.gene35817:CDS |
ATCCACTGAAGAAATTGCAC+AGG | 0.586485 | 2.1:+13412328 | MS.gene35817:CDS |
AGATAGTTAGCGCGTGTCAA+GGG | 0.586653 | 2.1:-13410864 | None:intergenic |
GGAGGGACTTACCAATAGCA+TGG | 0.589213 | 2.1:-13413454 | None:intergenic |
ACCGTTAACCGATGGAGTCA+CGG | 0.589291 | 2.1:+13405815 | MS.gene35817:CDS |
ACGGGAGAAGGACGAGAGAG+AGG | 0.589513 | 2.1:-13405743 | None:intergenic |
TTCTTGTCTTGATAACAAAG+TGG | 0.591441 | 2.1:+13409338 | MS.gene35817:CDS |
GCATAAGCCACAACCAATGG+AGG | 0.592659 | 2.1:-13410894 | None:intergenic |
TCCAGGGATTGGGCAGCCAA+GGG | 0.592975 | 2.1:+13413429 | MS.gene35817:CDS |
TTCAAAGGTACCCGATCATG+AGG | 0.595563 | 2.1:-13409294 | None:intergenic |
CAGCCAGCTGAGCTAAAACA+TGG | 0.598980 | 2.1:+13410040 | MS.gene35817:CDS |
TTACCAAGTATCTACTTCAG+AGG | 0.599229 | 2.1:+13410379 | MS.gene35817:CDS |
CAACTTGAACCCAACAACAC+CGG | 0.601241 | 2.1:-13408537 | None:intergenic |
TCCATCGGTTAACGGTGGAA+CGG | 0.603600 | 2.1:-13405808 | None:intergenic |
CCGTTAGGGACAGGAAAGGA+TGG | 0.603630 | 2.1:+13412275 | MS.gene35817:CDS |
TGGTTCTGGTATAGTACACC+AGG | 0.603672 | 2.1:+13408037 | MS.gene35817:CDS |
CGACAGCTCTGATCTGAGGA+CGG | 0.603821 | 2.1:-13405865 | None:intergenic |
GCTGGTGAAAATCCTTTCAA+GGG | 0.608551 | 2.1:+13406971 | MS.gene35817:intron |
CCCTGAATTGCCAATACATG+TGG | 0.612505 | 2.1:-13410595 | None:intergenic |
TTGGTAACAACTCCAGAACC+AGG | 0.614921 | 2.1:-13410363 | None:intergenic |
AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 2.1:+13410105 | MS.gene35817:CDS |
ACAAGTCTTCCCAAGCCTGG+TGG | 0.616274 | 2.1:+13407001 | MS.gene35817:CDS |
ACATATGAAGCTATTACTAA+GGG | 0.617409 | 2.1:+13412483 | MS.gene35817:CDS |
TCGGTTAACGGTGGAACGGG+CGG | 0.617594 | 2.1:-13405804 | None:intergenic |
CGCGTGTCAAGGGATGCACT+CGG | 0.620384 | 2.1:-13410854 | None:intergenic |
ACACAAATTCTTAGGAAACA+TGG | 0.621487 | 2.1:+13408611 | MS.gene35817:CDS |
GCACAATACCTTATGCAGCG+TGG | 0.623152 | 2.1:+13412726 | MS.gene35817:CDS |
GAGGGACTTACCAATAGCAT+GGG | 0.623483 | 2.1:-13413453 | None:intergenic |
GCTTGAGTTCCAGAGAAACA+AGG | 0.624830 | 2.1:+13407953 | MS.gene35817:CDS |
AGCCACAACCAATGGAGGGG+AGG | 0.625371 | 2.1:-13410889 | None:intergenic |
CATAAGCCACAACCAATGGA+GGG | 0.625671 | 2.1:-13410893 | None:intergenic |
AGTTCCAGAGAAACAAGGAG+AGG | 0.626993 | 2.1:+13407958 | MS.gene35817:CDS |
GTCATGTCCTTGAAGTATGG+AGG | 0.629601 | 2.1:-13412585 | None:intergenic |
GGCGGCGGATGAGGTGAAAG+CGG | 0.639012 | 2.1:-13405774 | None:intergenic |
GAGAGACAGGAGATCTCCAA+AGG | 0.639602 | 2.1:-13405841 | None:intergenic |
AATGATAGAGGCCTATCTCA+GGG | 0.640303 | 2.1:+13408974 | MS.gene35817:CDS |
TTCATGACCAGTCAATCCCA+AGG | 0.643471 | 2.1:-13413685 | None:intergenic |
GAATAAGCTCTGTCTTGTTG+AGG | 0.645207 | 2.1:-13409120 | None:intergenic |
CGTGAATGTATGTTGAGTTG+GGG | 0.645367 | 2.1:-13412560 | None:intergenic |
ATTGTAAACAAGCTATTGAA+CGG | 0.646245 | 2.1:+13412834 | MS.gene35817:CDS |
ATAAGCCACAACCAATGGAG+GGG | 0.646717 | 2.1:-13410892 | None:intergenic |
CATGTATCTCAGGACCAAAG+AGG | 0.648338 | 2.1:+13409178 | MS.gene35817:CDS |
ATTCTCGGATCATTGAGAGA+AGG | 0.650901 | 2.1:-13407052 | None:intergenic |
CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 2.1:-13410108 | None:intergenic |
TCGGATCATTGAGAGAAGGA+AGG | 0.651512 | 2.1:-13407048 | None:intergenic |
TCCAGCTGGAAATATTAACA+AGG | 0.652532 | 2.1:+13412692 | MS.gene35817:CDS |
AGCTCCAGCCAGCACAATGG+TGG | 0.653466 | 2.1:-13413388 | None:intergenic |
AAGCCAAATCAACAACAGCT+GGG | 0.656345 | 2.1:-13407531 | None:intergenic |
TGGTATGGGTGAATTATCGT+TGG | 0.657380 | 2.1:+13408749 | MS.gene35817:CDS |
AATGATGAAGTTATGTCTAG+GGG | 0.661576 | 2.1:+13412792 | MS.gene35817:CDS |
ATACTTCAAGGACATGACCA+TGG | 0.661807 | 2.1:+13412590 | MS.gene35817:CDS |
ATACGGCAGTGGAAGTTCCA+GGG | 0.662339 | 2.1:+13413413 | MS.gene35817:CDS |
TGGTGTACTATACCAGAACC+AGG | 0.663464 | 2.1:-13408035 | None:intergenic |
CACAGCTCGCTTTGACACAG+AGG | 0.664298 | 2.1:+13413800 | MS.gene35817:CDS |
CACATGTATTGGCAATTCAG+GGG | 0.665307 | 2.1:+13410596 | MS.gene35817:CDS |
GAGCATATTACGGAAAGCAG+TGG | 0.665568 | 2.1:-13408003 | None:intergenic |
GAACATGTCAGGCAACACGT+TGG | 0.666023 | 2.1:-13412454 | None:intergenic |
TAACTTCATCATTGCCACGA+CGG | 0.672661 | 2.1:-13412782 | None:intergenic |
TTCAGCTCCAGCCAGCACAA+TGG | 0.672803 | 2.1:-13413391 | None:intergenic |
TGTTGCTCTGAGAGAAGCCA+TGG | 0.672975 | 2.1:-13405681 | None:intergenic |
ATCTACAGGGAAGAAACCCA+TGG | 0.674382 | 2.1:-13408817 | None:intergenic |
GTTACTCTATCCTGACAGTG+TGG | 0.677429 | 2.1:+13408206 | MS.gene35817:CDS |
AGACTGTGCACATTCCAACA+GGG | 0.682191 | 2.1:+13412871 | MS.gene35817:CDS |
GACTGTGCACATTCCAACAG+GGG | 0.683171 | 2.1:+13412872 | MS.gene35817:CDS |
TAGGCATCCTTCACACCATG+AGG | 0.684287 | 2.1:-13412624 | None:intergenic |
GGAGCCGTTAGGGACAGGAA+AGG | 0.690362 | 2.1:+13412271 | MS.gene35817:CDS |
TTGTCTGGAAAATTGCGCAA+TGG | 0.696960 | 2.1:+13408557 | MS.gene35817:CDS |
TTCACACCATGAGGTCCAGG+AGG | 0.697455 | 2.1:-13412615 | None:intergenic |
ACAATACCTTATGCAGCGTG+GGG | 0.701770 | 2.1:+13412728 | MS.gene35817:CDS |
TCACCAGATTTGAAGCAAAG+GGG | 0.711190 | 2.1:-13413651 | None:intergenic |
ATAATGACAGCCTATGAGCA+TGG | 0.713309 | 2.1:+13408508 | MS.gene35817:intron |
GTGACTCCATCGGTTAACGG+TGG | 0.718292 | 2.1:-13405813 | None:intergenic |
TTGGAGTACTTCAACCATGG+AGG | 0.720887 | 2.1:+13414005 | MS.gene35817:CDS |
GTAATGTTACATGATCTACA+GGG | 0.772666 | 2.1:-13408830 | None:intergenic |
TGTACTATACCAGAACCAGG+AGG | 0.788384 | 2.1:-13408032 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 13405683 | 13414067 | 13405683 | ID=MS.gene35817 |
chr2.1 | mRNA | 13405683 | 13414067 | 13405683 | ID=MS.gene35817.t1;Parent=MS.gene35817 |
chr2.1 | exon | 13405683 | 13405929 | 13405683 | ID=MS.gene35817.t1.exon1;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13405683 | 13405929 | 13405683 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13406972 | 13407076 | 13406972 | ID=MS.gene35817.t1.exon2;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13406972 | 13407076 | 13406972 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13407255 | 13407415 | 13407255 | ID=MS.gene35817.t1.exon3;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13407255 | 13407415 | 13407255 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13407517 | 13407609 | 13407517 | ID=MS.gene35817.t1.exon4;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13407517 | 13407609 | 13407517 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13407873 | 13408058 | 13407873 | ID=MS.gene35817.t1.exon5;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13407873 | 13408058 | 13407873 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13408162 | 13408323 | 13408162 | ID=MS.gene35817.t1.exon6;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13408162 | 13408323 | 13408162 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13408518 | 13408662 | 13408518 | ID=MS.gene35817.t1.exon7;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13408518 | 13408662 | 13408518 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13408745 | 13408887 | 13408745 | ID=MS.gene35817.t1.exon8;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13408745 | 13408887 | 13408745 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13408969 | 13409025 | 13408969 | ID=MS.gene35817.t1.exon9;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13408969 | 13409025 | 13408969 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13409120 | 13409199 | 13409120 | ID=MS.gene35817.t1.exon10;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13409120 | 13409199 | 13409120 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13409293 | 13409368 | 13409293 | ID=MS.gene35817.t1.exon11;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13409293 | 13409368 | 13409293 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13409983 | 13410168 | 13409983 | ID=MS.gene35817.t1.exon12;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13409983 | 13410168 | 13409983 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13410333 | 13410400 | 13410333 | ID=MS.gene35817.t1.exon13;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13410333 | 13410400 | 13410333 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13410539 | 13410657 | 13410539 | ID=MS.gene35817.t1.exon14;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13410539 | 13410657 | 13410539 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13410808 | 13410929 | 13410808 | ID=MS.gene35817.t1.exon15;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13410808 | 13410929 | 13410808 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13412251 | 13412349 | 13412251 | ID=MS.gene35817.t1.exon16;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13412251 | 13412349 | 13412251 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13412444 | 13412923 | 13412444 | ID=MS.gene35817.t1.exon17;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13412444 | 13412923 | 13412444 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13413366 | 13413464 | 13413366 | ID=MS.gene35817.t1.exon18;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13413366 | 13413464 | 13413366 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13413579 | 13413821 | 13413579 | ID=MS.gene35817.t1.exon19;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13413579 | 13413821 | 13413579 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
chr2.1 | exon | 13413999 | 13414067 | 13413999 | ID=MS.gene35817.t1.exon20;Parent=MS.gene35817.t1 |
chr2.1 | CDS | 13413999 | 13414067 | 13413999 | ID=cds.MS.gene35817.t1;Parent=MS.gene35817.t1 |
Gene Sequence |
Protein sequence |