Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35820.t1 | XP_003596988.1 | 99.6 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.00E+00 | 1969.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35820.t1 | Q9SIB9 | 85.8 | 959 | 131 | 2 | 26 | 979 | 32 | 990 | 0.0e+00 | 1687.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35820.t1 | G7ITZ5 | 99.6 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.0e+00 | 1969.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052361 | MS.gene35820 | 0.816768 | 4.66E-52 | -1.69E-46 |
MS.gene054016 | MS.gene35820 | 0.859321 | 4.48E-63 | -1.69E-46 |
MS.gene054017 | MS.gene35820 | 0.996916 | 4.39E-234 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene041065 | MS.gene35820 | PPI |
MS.gene35820 | MS.gene90508 | PPI |
MS.gene32746 | MS.gene35820 | PPI |
MS.gene35820 | MS.gene02695 | PPI |
MS.gene56790 | MS.gene35820 | PPI |
MS.gene35820 | MS.gene42646 | PPI |
MS.gene35820 | MS.gene011805 | PPI |
MS.gene014952 | MS.gene35820 | PPI |
MS.gene99212 | MS.gene35820 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35820.t1 | MTR_2g088360 | 99.591 | 979 | 4 | 0 | 1 | 979 | 1 | 979 | 0.0 | 2018 |
MS.gene35820.t1 | MTR_4g048190 | 89.566 | 968 | 92 | 2 | 15 | 979 | 18 | 979 | 0.0 | 1805 |
MS.gene35820.t1 | MTR_5g022940 | 84.710 | 896 | 136 | 1 | 83 | 977 | 2 | 897 | 0.0 | 1609 |
MS.gene35820.t1 | MTR_1g075520 | 76.275 | 902 | 206 | 2 | 79 | 979 | 1 | 895 | 0.0 | 1445 |
MS.gene35820.t1 | MTR_5g022940 | 85.246 | 793 | 117 | 0 | 185 | 977 | 1 | 793 | 0.0 | 1442 |
MS.gene35820.t1 | MTR_2g067620 | 85.962 | 577 | 41 | 6 | 136 | 693 | 134 | 689 | 0.0 | 960 |
MS.gene35820.t1 | MTR_2g067620 | 81.325 | 166 | 1 | 1 | 844 | 979 | 700 | 865 | 8.76e-76 | 267 |
MS.gene35820.t1 | MTR_4g115490 | 70.833 | 144 | 16 | 2 | 660 | 802 | 154 | 272 | 1.58e-56 | 197 |
MS.gene35820.t1 | MTR_4g074000 | 44.295 | 149 | 69 | 3 | 782 | 917 | 1 | 148 | 4.01e-25 | 105 |
MS.gene35820.t1 | MTR_1g045750 | 23.810 | 462 | 251 | 16 | 205 | 651 | 122 | 497 | 2.93e-16 | 83.6 |
MS.gene35820.t1 | MTR_1g073200 | 26.582 | 395 | 238 | 13 | 264 | 651 | 170 | 519 | 4.68e-14 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35820.t1 | AT2G05710 | 87.460 | 933 | 116 | 1 | 48 | 979 | 58 | 990 | 0.0 | 1724 |
MS.gene35820.t1 | AT4G26970 | 80.126 | 951 | 189 | 0 | 29 | 979 | 45 | 995 | 0.0 | 1619 |
MS.gene35820.t1 | AT4G35830 | 84.281 | 897 | 141 | 0 | 83 | 979 | 2 | 898 | 0.0 | 1605 |
MS.gene35820.t1 | AT4G35830 | 84.654 | 795 | 122 | 0 | 185 | 979 | 1 | 795 | 0.0 | 1432 |
MS.gene35820.t1 | AT5G54950 | 75.439 | 57 | 14 | 0 | 902 | 958 | 1 | 57 | 1.22e-24 | 98.6 |
MS.gene35820.t1 | AT4G13430 | 25.909 | 440 | 235 | 15 | 225 | 651 | 140 | 501 | 1.21e-17 | 87.8 |
Find 298 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAATTCTCTCAAAACTTT+TGG | 0.200994 | 2.1:-13426670 | None:intergenic |
GCCTATTGCCTGTTGAATTT+TGG | 0.202495 | 2.1:+13425714 | MS.gene35820:CDS |
GCCAATATGTCTCCTGAATA+TGG | 0.241612 | 2.1:+13421860 | MS.gene35820:CDS |
AAGCCTGGTGGTGGTGAATT+TGG | 0.262576 | 2.1:+13420084 | MS.gene35820:CDS |
ACAAGTCTTGCTCCTGGTTC+TGG | 0.266793 | 2.1:+13423422 | MS.gene35820:CDS |
AGGGCAGTATCTTGCCTCTT+TGG | 0.272951 | 2.1:-13422263 | None:intergenic |
ATGTTTACTTGAGGGATATT+TGG | 0.273088 | 2.1:+13425375 | MS.gene35820:CDS |
TAACTGTCACACAAATTCTT+AGG | 0.279077 | 2.1:+13421674 | MS.gene35820:CDS |
ACCACATGTATTGGCAATTC+AGG | 0.281196 | 2.1:+13423665 | MS.gene35820:CDS |
CTCGTTGTTCCTCCTGGTTC+TGG | 0.283190 | 2.1:+13421094 | MS.gene35820:CDS |
CCCATGGTTGCTCCATATTC+AGG | 0.293010 | 2.1:-13421872 | None:intergenic |
GAGTCGCTGGATGGGGTGTT+GGG | 0.293228 | 2.1:+13421339 | MS.gene35820:CDS |
GAGAATTCATCGCAGTAATT+TGG | 0.293240 | 2.1:+13426683 | MS.gene35820:CDS |
ACTTTGTCTTGTGCTTCTTT+TGG | 0.305193 | 2.1:-13423066 | None:intergenic |
GAATGCAGTGCAGGCTAATA+TGG | 0.306167 | 2.1:+13421000 | MS.gene35820:CDS |
AAGAAGGACTTCAACTCTTA+TGG | 0.309032 | 2.1:+13425828 | MS.gene35820:CDS |
ATTCCCCTTTGCTTCAAATC+TGG | 0.321664 | 2.1:+13426720 | MS.gene35820:CDS |
GTTGTGGCTTATGCTCTTGC+TGG | 0.322295 | 2.1:+13423973 | MS.gene35820:CDS |
GGAGTCGCTGGATGGGGTGT+TGG | 0.326677 | 2.1:+13421338 | MS.gene35820:CDS |
AGTCCCAGCTGTTGTTGATT+TGG | 0.331621 | 2.1:+13420599 | MS.gene35820:CDS |
TGACAGAGATACAAGGCTTC+AGG | 0.333044 | 2.1:+13426432 | MS.gene35820:intron |
CAACATCTGCTTTAGTAACT+TGG | 0.337431 | 2.1:-13420387 | None:intergenic |
TCCATATTCAGGAGACATAT+TGG | 0.356776 | 2.1:-13421861 | None:intergenic |
CAATTTGTTTGCCCTGAGAT+AGG | 0.357810 | 2.1:-13422056 | None:intergenic |
CTTAGGAAACATGGTGTTGT+AGG | 0.358938 | 2.1:+13421691 | MS.gene35820:CDS |
GCTTCTGCTATCTCAGAAAA+TGG | 0.360827 | 2.1:+13423707 | MS.gene35820:CDS |
TTACAATACCTCAAGCTAAC+TGG | 0.361768 | 2.1:+13421920 | MS.gene35820:CDS |
GGCTTCAATATTGTTGGATT+CGG | 0.364215 | 2.1:+13423638 | MS.gene35820:CDS |
ACCCTTGGCTGCCCAATCCC+TGG | 0.364580 | 2.1:-13426502 | None:intergenic |
CATCGCAAGATCGCCACTTC+CGG | 0.365943 | 2.1:+13418980 | MS.gene35820:CDS |
AAAACCTCTCCTTGTTTCTC+TGG | 0.366881 | 2.1:-13421033 | None:intergenic |
GTGAATTATCGTTGGCTGAC+AGG | 0.368225 | 2.1:+13421828 | MS.gene35820:CDS |
GCCCTCAAAATTACGGTTCC+CGG | 0.379970 | 2.1:-13423902 | None:intergenic |
TCTAGAAAGAGGAAATAGTT+TGG | 0.380399 | 2.1:-13418780 | None:intergenic |
CTCTTTGGTCCTGAGATACA+TGG | 0.380632 | 2.1:-13422248 | None:intergenic |
TACATATGAAGCTATTACTA+AGG | 0.380840 | 2.1:+13425554 | MS.gene35820:CDS |
GAGCAAGGCTTCAATATTGT+TGG | 0.381018 | 2.1:+13423632 | MS.gene35820:CDS |
GATGGAGTCACGGCGTCCTT+TGG | 0.386324 | 2.1:+13418897 | MS.gene35820:CDS |
CAGTGGAAGTTCCAGGGATT+GGG | 0.390267 | 2.1:+13426491 | MS.gene35820:CDS |
GGTGGAACGGGCGGCGTTAG+CGG | 0.391565 | 2.1:-13418867 | None:intergenic |
TGCCTCCCCTCCATTGGTTG+TGG | 0.396095 | 2.1:+13423957 | MS.gene35820:CDS |
CATGCCACCATTGTGCTGGC+TGG | 0.398424 | 2.1:+13426456 | MS.gene35820:CDS |
GCCCATCAATCATAGTTGTA+TGG | 0.399890 | 2.1:-13421313 | None:intergenic |
GGCGTTAGCGGCGGCGGATG+AGG | 0.400584 | 2.1:-13418855 | None:intergenic |
ATGGTGTTACCCGGTGTTGT+TGG | 0.400750 | 2.1:+13421598 | MS.gene35820:CDS |
CTTTGCTCCAGGCAATGGTA+TGG | 0.401240 | 2.1:+13421805 | MS.gene35820:intron |
AGTCGCTGGATGGGGTGTTG+GGG | 0.406574 | 2.1:+13421340 | MS.gene35820:CDS |
TGTTGGAATGTGCACAGTCT+TGG | 0.407414 | 2.1:-13425940 | None:intergenic |
GTTGTTGGGTTCAAGTTGTC+TGG | 0.407565 | 2.1:+13421613 | MS.gene35820:CDS |
GTTGGAATGTGCACAGTCTT+GGG | 0.410552 | 2.1:-13425939 | None:intergenic |
TGAAAGAAATGAAGTCTGAT+TGG | 0.410840 | 2.1:+13422384 | MS.gene35820:CDS |
TCTCTCAATGATCCGAGAAT+TGG | 0.411423 | 2.1:+13420126 | MS.gene35820:CDS |
GTAGCATCTGCTGTGCTGTC+CGG | 0.413083 | 2.1:+13423883 | MS.gene35820:CDS |
TGTAATGTTACATGATCTAC+AGG | 0.417998 | 2.1:-13421902 | None:intergenic |
CAGGTCAATCTTGAATATCT+TGG | 0.418183 | 2.1:+13421230 | MS.gene35820:intron |
CGCAGTAATTTGGTAGGAAT+GGG | 0.418887 | 2.1:+13426693 | MS.gene35820:CDS |
CTTGTCAAGTTTCCCTTGAA+AGG | 0.419364 | 2.1:-13420054 | None:intergenic |
GTCGCTGGATGGGGTGTTGG+GGG | 0.419966 | 2.1:+13421341 | MS.gene35820:CDS |
AATACGGCAGTGGAAGTTCC+AGG | 0.422241 | 2.1:+13426484 | MS.gene35820:CDS |
AGGGCATGCCACCATTGTGC+TGG | 0.422305 | 2.1:+13426452 | MS.gene35820:CDS |
CTTGTTTACAATTCGTATGT+TGG | 0.422861 | 2.1:-13425895 | None:intergenic |
TCCCATACAACTATGATTGA+TGG | 0.423307 | 2.1:+13421311 | MS.gene35820:CDS |
AAATTCACCACCACCAGGCT+TGG | 0.423386 | 2.1:-13420082 | None:intergenic |
CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 2.1:+13423175 | MS.gene35820:CDS |
CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 2.1:+13421281 | MS.gene35820:CDS |
AAGACTGTGCACATTCCAAC+AGG | 0.426168 | 2.1:+13425942 | MS.gene35820:CDS |
TGATCAACAACTAGATCAAC+AGG | 0.426916 | 2.1:-13420947 | None:intergenic |
TACTGTCACCAAAATTCAAC+AGG | 0.429302 | 2.1:-13425722 | None:intergenic |
TTTCCACCCCACGCTGCATA+AGG | 0.429814 | 2.1:-13425806 | None:intergenic |
CTATCTTGCCTCCCCTCCAT+TGG | 0.433525 | 2.1:+13423951 | MS.gene35820:CDS |
CCGGGTAACACCATGCTCAT+AGG | 0.436873 | 2.1:-13421589 | None:intergenic |
ACGGGCGGCGTTAGCGGCGG+CGG | 0.437741 | 2.1:-13418861 | None:intergenic |
AGCCAAGGGTCCCATGCTAT+TGG | 0.439651 | 2.1:+13426515 | MS.gene35820:CDS |
CTGCTGAGAAGCTGTATTCA+TGG | 0.439794 | 2.1:+13425607 | MS.gene35820:CDS |
ACCAAAATTCAACAGGCAAT+AGG | 0.439902 | 2.1:-13425715 | None:intergenic |
TCGCAGTAATTTGGTAGGAA+TGG | 0.441035 | 2.1:+13426692 | MS.gene35820:CDS |
TGGGCTTGGAGTCGCTGGAT+GGG | 0.441530 | 2.1:+13421331 | MS.gene35820:CDS |
TCGTGAATGTATGTTGAGTT+GGG | 0.443228 | 2.1:-13425633 | None:intergenic |
GGCTGGTCTTGTTGCAAAGA+AGG | 0.443338 | 2.1:+13423197 | MS.gene35820:CDS |
AATATGCTCGTTGTTCCTCC+TGG | 0.443434 | 2.1:+13421088 | MS.gene35820:CDS |
GACTTTGAAAAGGAGCCGTT+AGG | 0.444702 | 2.1:+13425332 | MS.gene35820:CDS |
ATCTGAGGACGGAGAGAGAC+AGG | 0.445324 | 2.1:-13418926 | None:intergenic |
AAGCTATTGAACGGCGAAGT+TGG | 0.446095 | 2.1:+13425915 | MS.gene35820:CDS |
CCATCGGTTAACGGTGGAAC+GGG | 0.447523 | 2.1:-13418879 | None:intergenic |
GGCGCATGACTTAGGTTTGA+AGG | 0.447741 | 2.1:+13423218 | MS.gene35820:CDS |
GCAGTGGAAGTTCCAGGGAT+TGG | 0.448099 | 2.1:+13426490 | MS.gene35820:CDS |
AGCTGGTGAAAATCCTTTCA+AGG | 0.448607 | 2.1:+13420041 | MS.gene35820:intron |
GCAAAGAAGGCGCATGACTT+AGG | 0.450258 | 2.1:+13423210 | MS.gene35820:CDS |
CAATGATAGAGGCCTATCTC+AGG | 0.454653 | 2.1:+13422044 | MS.gene35820:CDS |
TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 2.1:+13421282 | MS.gene35820:CDS |
GGGCTTGGAGTCGCTGGATG+GGG | 0.456615 | 2.1:+13421332 | MS.gene35820:CDS |
CTCGTGAATGTATGTTGAGT+TGG | 0.457019 | 2.1:-13425634 | None:intergenic |
GTTGCAAAATTCGATTTCCA+TGG | 0.457117 | 2.1:+13423087 | MS.gene35820:CDS |
ATGGGCTTGGAGTCGCTGGA+TGG | 0.459040 | 2.1:+13421330 | MS.gene35820:CDS |
TAGCATCTGCTGTGCTGTCC+GGG | 0.459362 | 2.1:+13423884 | MS.gene35820:CDS |
GGTGAGGATGCTGACACCTT+GGG | 0.460474 | 2.1:+13426741 | MS.gene35820:CDS |
CAAGCCAAATCAACAACAGC+TGG | 0.461130 | 2.1:-13420603 | None:intergenic |
TCACGAGCCTCCATACTTCA+AGG | 0.461990 | 2.1:+13425650 | MS.gene35820:CDS |
CCACATGTATTGGCAATTCA+GGG | 0.462224 | 2.1:+13423666 | MS.gene35820:CDS |
TTTGCTCCAGGCAATGGTAT+GGG | 0.463247 | 2.1:+13421806 | MS.gene35820:intron |
TGGTGTTACCCGGTGTTGTT+GGG | 0.465294 | 2.1:+13421599 | MS.gene35820:CDS |
CTTGTAATTCGTTCCACATA+GGG | 0.465949 | 2.1:-13425581 | None:intergenic |
GCCTGCTCGTGTTCTTCTCC+AGG | 0.467838 | 2.1:+13420465 | MS.gene35820:CDS |
CCATCCTTTCCTGTCCCTAA+CGG | 0.468008 | 2.1:-13425347 | None:intergenic |
CTCACCAGATTTGAAGCAAA+GGG | 0.468492 | 2.1:-13426724 | None:intergenic |
GTATTCTATCAGAATTCTCC+TGG | 0.469390 | 2.1:+13420336 | MS.gene35820:CDS |
TGATAACAAAGTGGGATTCA+AGG | 0.470540 | 2.1:+13422418 | MS.gene35820:CDS |
GGCTTATGCTCTTGCTGGCA+CGG | 0.470773 | 2.1:+13423978 | MS.gene35820:CDS |
GCTGACACCTTGGGATTGAC+TGG | 0.471027 | 2.1:+13426750 | MS.gene35820:CDS |
AGGAGACATATTGGCAATAG+TGG | 0.471422 | 2.1:-13421852 | None:intergenic |
TACCAATAGCATGGGACCCT+TGG | 0.471976 | 2.1:-13426517 | None:intergenic |
ATGGATCCTCCTGGACCTCA+TGG | 0.472294 | 2.1:+13425681 | MS.gene35820:CDS |
CAGTTGTGACGGTGACATCT+TGG | 0.472921 | 2.1:-13426827 | None:intergenic |
AGAACACGAGCAGGCTTGAA+AGG | 0.473996 | 2.1:-13420457 | None:intergenic |
ATGGTCATGTCCTTGAAGTA+TGG | 0.475691 | 2.1:-13425660 | None:intergenic |
GACAGAGATACAAGGCTTCA+GGG | 0.477290 | 2.1:+13426433 | MS.gene35820:intron |
ACAACTATGATTGATGGGCT+TGG | 0.477538 | 2.1:+13421317 | MS.gene35820:CDS |
TTCGGCTGTACCACATGTAT+TGG | 0.477825 | 2.1:+13423656 | MS.gene35820:CDS |
TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 2.1:-13421287 | None:intergenic |
GAAAAGGAGCCGTTAGGGAC+AGG | 0.481014 | 2.1:+13425338 | MS.gene35820:CDS |
CACAATACCTTATGCAGCGT+GGG | 0.484741 | 2.1:+13425799 | MS.gene35820:CDS |
GCACTCGGCCCTCAAAATTA+CGG | 0.485012 | 2.1:-13423909 | None:intergenic |
AATGACTTCACTTCTTAATG+AGG | 0.487043 | 2.1:-13427124 | None:intergenic |
GCATACTTCCCTATGTCATC+AGG | 0.488632 | 2.1:+13427099 | MS.gene35820:CDS |
GAGGAACAACGAGCATATTA+CGG | 0.489483 | 2.1:-13421084 | None:intergenic |
TGCATAAGGTATTGTGCAGC+AGG | 0.491012 | 2.1:-13425792 | None:intergenic |
GAAGCAGAGGCAGCAATGCT+TGG | 0.491053 | 2.1:+13421368 | MS.gene35820:CDS |
GCGGGAGATCGAACGGGAGA+AGG | 0.492838 | 2.1:-13418827 | None:intergenic |
TGGCAAGAATGTTTACTTGA+GGG | 0.494069 | 2.1:+13425367 | MS.gene35820:CDS |
AAGGTCAGAGAATGCAGTGC+AGG | 0.494971 | 2.1:+13420991 | MS.gene35820:CDS |
CCTTTGCTTCAAATCTGGTG+AGG | 0.494973 | 2.1:+13426725 | MS.gene35820:CDS |
ACATAAAGCTTCTCCCCTGT+TGG | 0.495420 | 2.1:-13425957 | None:intergenic |
TTCCAGGGATTGGGCAGCCA+AGG | 0.496253 | 2.1:+13426500 | MS.gene35820:CDS |
TCAGACTTCATTTCTTTCAA+AGG | 0.497520 | 2.1:-13422380 | None:intergenic |
GCCGTGACTCCATCGGTTAA+CGG | 0.498431 | 2.1:-13418888 | None:intergenic |
ATTGATGGGCTTGGAGTCGC+TGG | 0.499266 | 2.1:+13421326 | MS.gene35820:CDS |
TTCTAATAAGATCAATCCTC+TGG | 0.501652 | 2.1:+13420659 | MS.gene35820:CDS |
CCCATCAATCATAGTTGTAT+GGG | 0.501899 | 2.1:-13421312 | None:intergenic |
TGTCAGGCAACACGTTGGAT+TGG | 0.501963 | 2.1:-13425521 | None:intergenic |
CACTTCTTCCAGTTAGCTTG+AGG | 0.504054 | 2.1:-13421928 | None:intergenic |
GCATGCGTGATGCTATGAAT+AGG | 0.504170 | 2.1:+13420625 | MS.gene35820:CDS |
AGAGGCAGCAATGCTTGGCC+AGG | 0.505091 | 2.1:+13421373 | MS.gene35820:CDS |
TGGTGAGGATGCTGACACCT+TGG | 0.505357 | 2.1:+13426740 | MS.gene35820:CDS |
TCCTTCACACCATGAGGTCC+AGG | 0.505579 | 2.1:-13425690 | None:intergenic |
GGTTGACATTGACTTTGAAA+AGG | 0.506476 | 2.1:+13425322 | MS.gene35820:intron |
GCAATGATGAAGTTATGTCT+AGG | 0.507216 | 2.1:+13425862 | MS.gene35820:CDS |
TATGTACTTCTGAACATGTC+AGG | 0.508691 | 2.1:-13425537 | None:intergenic |
TGAATTATCGTTGGCTGACA+GGG | 0.508821 | 2.1:+13421829 | MS.gene35820:CDS |
CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 2.1:+13423180 | MS.gene35820:CDS |
AATTCACCACCACCAGGCTT+GGG | 0.510953 | 2.1:-13420081 | None:intergenic |
TGTGACGGTGACATCTTGGC+CGG | 0.511650 | 2.1:-13426823 | None:intergenic |
GCAGCGTGGGGTGGAAAAGA+AGG | 0.512014 | 2.1:+13425812 | MS.gene35820:CDS |
CACCTGTGCAATTTCTTCAG+TGG | 0.512662 | 2.1:-13425402 | None:intergenic |
TTAGGAAACATGGTGTTGTA+GGG | 0.512869 | 2.1:+13421692 | MS.gene35820:CDS |
TCCTTGTTAATATTTCCAGC+TGG | 0.513378 | 2.1:-13425765 | None:intergenic |
CGATGATACTGTTCGATGAA+AGG | 0.513427 | 2.1:-13418962 | None:intergenic |
AGGAGAATTCTGATAGAATA+CGG | 0.514211 | 2.1:-13420334 | None:intergenic |
CCCATACAACTATGATTGAT+GGG | 0.514361 | 2.1:+13421312 | MS.gene35820:CDS |
GTGAAAGCGGGAGATCGAAC+GGG | 0.517009 | 2.1:-13418833 | None:intergenic |
AAAATCAGCGAGATAAAGCC+CGG | 0.517821 | 2.1:+13426804 | MS.gene35820:CDS |
AATTACGAATGGCAGATTCC+AGG | 0.519101 | 2.1:-13420354 | None:intergenic |
CAATGATGAAGTTATGTCTA+GGG | 0.519169 | 2.1:+13425863 | MS.gene35820:CDS |
CATGAATACAGCTTCTCAGC+AGG | 0.519200 | 2.1:-13425606 | None:intergenic |
GAAGAGAAGGTTCTAGAAAG+AGG | 0.522793 | 2.1:-13418791 | None:intergenic |
TCTTGTCTTGATAACAAAGT+GGG | 0.524984 | 2.1:+13422410 | MS.gene35820:CDS |
ACTGATCACATTTCTCCAGC+TGG | 0.526190 | 2.1:+13425750 | MS.gene35820:CDS |
ACTTGTAATTCGTTCCACAT+AGG | 0.526220 | 2.1:-13425582 | None:intergenic |
GGAACGGGCGGCGTTAGCGG+CGG | 0.527362 | 2.1:-13418864 | None:intergenic |
ATCGGAGATTATACCGGAAG+TGG | 0.530020 | 2.1:-13418993 | None:intergenic |
ACTTTGAAAAGGAGCCGTTA+GGG | 0.531710 | 2.1:+13425333 | MS.gene35820:CDS |
ATTGTTTGTCGACTATAATG+AGG | 0.532842 | 2.1:+13422075 | MS.gene35820:CDS |
TTGACAAGTCTTCCCAAGCC+TGG | 0.533973 | 2.1:+13420069 | MS.gene35820:CDS |
GAACACGAGCAGGCTTGAAA+GGG | 0.534295 | 2.1:-13420456 | None:intergenic |
TTACTAAGGGTAACCCTATG+TGG | 0.535614 | 2.1:+13425568 | MS.gene35820:CDS |
GCGGCGGATGAGGTGAAAGC+GGG | 0.536134 | 2.1:-13418845 | None:intergenic |
TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 2.1:+13423174 | MS.gene35820:CDS |
GAAGTCGAACCATGTATCTC+AGG | 0.536379 | 2.1:+13422239 | MS.gene35820:CDS |
GAATTGGAGTACTTCAACCA+TGG | 0.536629 | 2.1:+13427074 | MS.gene35820:CDS |
AATGAGGTTCCTGATGACAT+AGG | 0.539122 | 2.1:-13427108 | None:intergenic |
ATACCTCTGAAGTAGATACT+TGG | 0.540471 | 2.1:-13423453 | None:intergenic |
TCCTGAATATGGAGCAACCA+TGG | 0.542223 | 2.1:+13421871 | MS.gene35820:CDS |
TGTGCAATTTCTTCAGTGGA+TGG | 0.544671 | 2.1:-13425398 | None:intergenic |
CATAGGGAAGTATGCCTCCA+TGG | 0.545905 | 2.1:-13427091 | None:intergenic |
GTGACGGTGACATCTTGGCC+GGG | 0.548359 | 2.1:-13426822 | None:intergenic |
TCCTGGACCTCATGGTGTGA+AGG | 0.548498 | 2.1:+13425689 | MS.gene35820:CDS |
CCCGTTCCACCGTTAACCGA+TGG | 0.550117 | 2.1:+13418879 | MS.gene35820:CDS |
GTCACCGTCACAACTGATAC+CGG | 0.550262 | 2.1:+13426834 | MS.gene35820:CDS |
TTAGCTCAGCTGGCTGCCCA+TGG | 0.551057 | 2.1:-13423104 | None:intergenic |
TGTTGAAAAGATTATTGACT+GGG | 0.551841 | 2.1:+13420405 | MS.gene35820:CDS |
AAGATAGTTAGCGCGTGTCA+AGG | 0.552401 | 2.1:-13423935 | None:intergenic |
TGCTGAGAAGCTGTATTCAT+GGG | 0.552702 | 2.1:+13425608 | MS.gene35820:CDS |
GTGCTGGCTGGAGCTGAATA+CGG | 0.552786 | 2.1:+13426468 | MS.gene35820:CDS |
AGTCTTCCCAAGCCTGGTGG+TGG | 0.553048 | 2.1:+13420075 | MS.gene35820:CDS |
TCATGGCAGACCTCATGATC+GGG | 0.553602 | 2.1:+13422355 | MS.gene35820:intron |
ATGAGGTTCCTGATGACATA+GGG | 0.554400 | 2.1:-13427107 | None:intergenic |
CTCATGGCAGACCTCATGAT+CGG | 0.554707 | 2.1:+13422354 | MS.gene35820:intron |
AGAGCATAAGCCACAACCAA+TGG | 0.554884 | 2.1:-13423967 | None:intergenic |
CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 2.1:-13423180 | None:intergenic |
GGTGAAAGCGGGAGATCGAA+CGG | 0.559834 | 2.1:-13418834 | None:intergenic |
ACGAGAGAGAGGTGAAGAGA+AGG | 0.559856 | 2.1:-13418804 | None:intergenic |
ATGTTGAAAAGATTATTGAC+TGG | 0.559971 | 2.1:+13420404 | MS.gene35820:CDS |
AACTTGAACCCAACAACACC+GGG | 0.563808 | 2.1:-13421607 | None:intergenic |
ACCTGGAGAAGAACACGAGC+AGG | 0.566281 | 2.1:-13420466 | None:intergenic |
ATGAGGTCCAGGAGGATCCA+TGG | 0.567055 | 2.1:-13425679 | None:intergenic |
GAAATTGTCACAATTACGAA+TGG | 0.569548 | 2.1:-13420365 | None:intergenic |
GACATGACCATGGATCCTCC+TGG | 0.570495 | 2.1:+13425672 | MS.gene35820:CDS |
CAGTTCAAGTTGATGTAGCA+AGG | 0.570690 | 2.1:+13420972 | MS.gene35820:CDS |
CCTATGAGCATGGTGTTACC+CGG | 0.571735 | 2.1:+13421589 | MS.gene35820:CDS |
AATGTAGGTGGCAATGATAG+AGG | 0.571862 | 2.1:+13422033 | MS.gene35820:intron |
TCTCATCTGACAGAGATACA+AGG | 0.572796 | 2.1:+13426425 | MS.gene35820:intron |
TTGCAAAATTCGATTTCCAT+GGG | 0.572852 | 2.1:+13423088 | MS.gene35820:CDS |
CGTGATGCTATGAATAGGCT+TGG | 0.573806 | 2.1:+13420630 | MS.gene35820:CDS |
TTTCCAAATTCACCACCACC+AGG | 0.574063 | 2.1:-13420087 | None:intergenic |
TGGTGTTACAGCAACTGACT+TGG | 0.574164 | 2.1:+13421648 | MS.gene35820:CDS |
CCTGAATATGGAGCAACCAT+GGG | 0.574382 | 2.1:+13421872 | MS.gene35820:CDS |
AAAGGACGCCGTGACTCCAT+CGG | 0.575808 | 2.1:-13418895 | None:intergenic |
GGAGCGACAGCTCTGATCTG+AGG | 0.576907 | 2.1:-13418941 | None:intergenic |
ATACCTTATGCAGCGTGGGG+TGG | 0.578429 | 2.1:+13425803 | MS.gene35820:CDS |
GCTGGAGCTGAATACGGCAG+TGG | 0.580134 | 2.1:+13426474 | MS.gene35820:CDS |
TTGGAATGTGCACAGTCTTG+GGG | 0.580481 | 2.1:-13425938 | None:intergenic |
CCTCACCAGATTTGAAGCAA+AGG | 0.584378 | 2.1:-13426725 | None:intergenic |
ATGGCAAGAATGTTTACTTG+AGG | 0.585412 | 2.1:+13425366 | MS.gene35820:CDS |
AACTCTTATGGAAGCCGTCG+TGG | 0.585544 | 2.1:+13425840 | MS.gene35820:CDS |
ATTCATCGCAGTAATTTGGT+AGG | 0.585715 | 2.1:+13426687 | MS.gene35820:CDS |
ATCCACTGAAGAAATTGCAC+AGG | 0.586485 | 2.1:+13425400 | MS.gene35820:CDS |
AGATAGTTAGCGCGTGTCAA+GGG | 0.586653 | 2.1:-13423934 | None:intergenic |
GGAGGGACTTACCAATAGCA+TGG | 0.589213 | 2.1:-13426526 | None:intergenic |
ACCGTTAACCGATGGAGTCA+CGG | 0.589291 | 2.1:+13418887 | MS.gene35820:CDS |
ACGGGAGAAGGACGAGAGAG+AGG | 0.589513 | 2.1:-13418815 | None:intergenic |
TTCTTGTCTTGATAACAAAG+TGG | 0.591441 | 2.1:+13422409 | MS.gene35820:CDS |
GCATAAGCCACAACCAATGG+AGG | 0.592659 | 2.1:-13423964 | None:intergenic |
TCCAGGGATTGGGCAGCCAA+GGG | 0.592975 | 2.1:+13426501 | MS.gene35820:CDS |
TTCAAAGGTACCCGATCATG+AGG | 0.595563 | 2.1:-13422365 | None:intergenic |
CAGCCAGCTGAGCTAAAACA+TGG | 0.598980 | 2.1:+13423111 | MS.gene35820:CDS |
TTACCAAGTATCTACTTCAG+AGG | 0.599229 | 2.1:+13423450 | MS.gene35820:CDS |
CAACTTGAACCCAACAACAC+CGG | 0.601241 | 2.1:-13421608 | None:intergenic |
TCCATCGGTTAACGGTGGAA+CGG | 0.603600 | 2.1:-13418880 | None:intergenic |
CCGTTAGGGACAGGAAAGGA+TGG | 0.603630 | 2.1:+13425347 | MS.gene35820:CDS |
TGGTTCTGGTATAGTACACC+AGG | 0.603672 | 2.1:+13421108 | MS.gene35820:CDS |
CGACAGCTCTGATCTGAGGA+CGG | 0.603821 | 2.1:-13418937 | None:intergenic |
GCTGGTGAAAATCCTTTCAA+GGG | 0.608551 | 2.1:+13420042 | MS.gene35820:intron |
CCCTGAATTGCCAATACATG+TGG | 0.612505 | 2.1:-13423666 | None:intergenic |
TTGGTAACAACTCCAGAACC+AGG | 0.614921 | 2.1:-13423434 | None:intergenic |
AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 2.1:+13423176 | MS.gene35820:CDS |
ACAAGTCTTCCCAAGCCTGG+TGG | 0.616274 | 2.1:+13420072 | MS.gene35820:CDS |
ACATATGAAGCTATTACTAA+GGG | 0.617409 | 2.1:+13425555 | MS.gene35820:CDS |
TCGGTTAACGGTGGAACGGG+CGG | 0.617594 | 2.1:-13418876 | None:intergenic |
CGCGTGTCAAGGGATGCACT+CGG | 0.620384 | 2.1:-13423924 | None:intergenic |
ACACAAATTCTTAGGAAACA+TGG | 0.621487 | 2.1:+13421682 | MS.gene35820:CDS |
GCACAATACCTTATGCAGCG+TGG | 0.623152 | 2.1:+13425798 | MS.gene35820:CDS |
GAGGGACTTACCAATAGCAT+GGG | 0.623483 | 2.1:-13426525 | None:intergenic |
GCTTGAGTTCCAGAGAAACA+AGG | 0.624830 | 2.1:+13421024 | MS.gene35820:CDS |
AGCCACAACCAATGGAGGGG+AGG | 0.625371 | 2.1:-13423959 | None:intergenic |
CATAAGCCACAACCAATGGA+GGG | 0.625671 | 2.1:-13423963 | None:intergenic |
AGTTCCAGAGAAACAAGGAG+AGG | 0.626993 | 2.1:+13421029 | MS.gene35820:CDS |
GTCATGTCCTTGAAGTATGG+AGG | 0.629601 | 2.1:-13425657 | None:intergenic |
GGCGGCGGATGAGGTGAAAG+CGG | 0.639012 | 2.1:-13418846 | None:intergenic |
GAGAGACAGGAGATCTCCAA+AGG | 0.639602 | 2.1:-13418913 | None:intergenic |
AATGATAGAGGCCTATCTCA+GGG | 0.640303 | 2.1:+13422045 | MS.gene35820:CDS |
TTCATGACCAGTCAATCCCA+AGG | 0.643471 | 2.1:-13426757 | None:intergenic |
GAATAAGCTCTGTCTTGTTG+AGG | 0.645207 | 2.1:-13422191 | None:intergenic |
CGTGAATGTATGTTGAGTTG+GGG | 0.645367 | 2.1:-13425632 | None:intergenic |
ATTGTAAACAAGCTATTGAA+CGG | 0.646245 | 2.1:+13425906 | MS.gene35820:CDS |
ATAAGCCACAACCAATGGAG+GGG | 0.646717 | 2.1:-13423962 | None:intergenic |
CATGTATCTCAGGACCAAAG+AGG | 0.648338 | 2.1:+13422249 | MS.gene35820:CDS |
ATTCTCGGATCATTGAGAGA+AGG | 0.650901 | 2.1:-13420123 | None:intergenic |
CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 2.1:-13423179 | None:intergenic |
TCGGATCATTGAGAGAAGGA+AGG | 0.651512 | 2.1:-13420119 | None:intergenic |
TCCAGCTGGAAATATTAACA+AGG | 0.652532 | 2.1:+13425764 | MS.gene35820:CDS |
AGCTCCAGCCAGCACAATGG+TGG | 0.653466 | 2.1:-13426460 | None:intergenic |
AAGCCAAATCAACAACAGCT+GGG | 0.656345 | 2.1:-13420602 | None:intergenic |
TGGTATGGGTGAATTATCGT+TGG | 0.657380 | 2.1:+13421820 | MS.gene35820:CDS |
AATGATGAAGTTATGTCTAG+GGG | 0.661576 | 2.1:+13425864 | MS.gene35820:CDS |
ATACTTCAAGGACATGACCA+TGG | 0.661807 | 2.1:+13425662 | MS.gene35820:CDS |
ATACGGCAGTGGAAGTTCCA+GGG | 0.662339 | 2.1:+13426485 | MS.gene35820:CDS |
TGGTGTACTATACCAGAACC+AGG | 0.663464 | 2.1:-13421106 | None:intergenic |
CACAGCTCGCTTTGACACAG+AGG | 0.664298 | 2.1:+13426872 | MS.gene35820:CDS |
CACATGTATTGGCAATTCAG+GGG | 0.665307 | 2.1:+13423667 | MS.gene35820:CDS |
GAGCATATTACGGAAAGCAG+TGG | 0.665568 | 2.1:-13421074 | None:intergenic |
GAACATGTCAGGCAACACGT+TGG | 0.666023 | 2.1:-13425526 | None:intergenic |
TAACTTCATCATTGCCACGA+CGG | 0.672661 | 2.1:-13425854 | None:intergenic |
TTCAGCTCCAGCCAGCACAA+TGG | 0.672803 | 2.1:-13426463 | None:intergenic |
TGTTGCTCTGAGAGAAGCCA+TGG | 0.672975 | 2.1:-13418753 | None:intergenic |
ATCTACAGGGAAGAAACCCA+TGG | 0.674382 | 2.1:-13421888 | None:intergenic |
GTTACTCTATCCTGACAGTG+TGG | 0.677429 | 2.1:+13421277 | MS.gene35820:CDS |
AGACTGTGCACATTCCAACA+GGG | 0.682191 | 2.1:+13425943 | MS.gene35820:CDS |
GACTGTGCACATTCCAACAG+GGG | 0.683171 | 2.1:+13425944 | MS.gene35820:CDS |
TAGGCATCCTTCACACCATG+AGG | 0.684287 | 2.1:-13425696 | None:intergenic |
GGAGCCGTTAGGGACAGGAA+AGG | 0.690362 | 2.1:+13425343 | MS.gene35820:CDS |
TTGTCTGGAAAATTGCGCAA+TGG | 0.696960 | 2.1:+13421628 | MS.gene35820:CDS |
TTCACACCATGAGGTCCAGG+AGG | 0.697455 | 2.1:-13425687 | None:intergenic |
ACAATACCTTATGCAGCGTG+GGG | 0.701770 | 2.1:+13425800 | MS.gene35820:CDS |
TCACCAGATTTGAAGCAAAG+GGG | 0.711190 | 2.1:-13426723 | None:intergenic |
ATAATGACAGCCTATGAGCA+TGG | 0.713309 | 2.1:+13421579 | MS.gene35820:intron |
GTGACTCCATCGGTTAACGG+TGG | 0.718292 | 2.1:-13418885 | None:intergenic |
TTGGAGTACTTCAACCATGG+AGG | 0.720887 | 2.1:+13427077 | MS.gene35820:CDS |
GTAATGTTACATGATCTACA+GGG | 0.772666 | 2.1:-13421901 | None:intergenic |
TGTACTATACCAGAACCAGG+AGG | 0.788384 | 2.1:-13421103 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 13418755 | 13427139 | 13418755 | ID=MS.gene35820 |
chr2.1 | mRNA | 13418755 | 13427139 | 13418755 | ID=MS.gene35820.t1;Parent=MS.gene35820 |
chr2.1 | exon | 13418755 | 13419001 | 13418755 | ID=MS.gene35820.t1.exon1;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13418755 | 13419001 | 13418755 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13420043 | 13420147 | 13420043 | ID=MS.gene35820.t1.exon2;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13420043 | 13420147 | 13420043 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13420326 | 13420486 | 13420326 | ID=MS.gene35820.t1.exon3;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13420326 | 13420486 | 13420326 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13420588 | 13420680 | 13420588 | ID=MS.gene35820.t1.exon4;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13420588 | 13420680 | 13420588 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13420944 | 13421129 | 13420944 | ID=MS.gene35820.t1.exon5;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13420944 | 13421129 | 13420944 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13421233 | 13421394 | 13421233 | ID=MS.gene35820.t1.exon6;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13421233 | 13421394 | 13421233 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13421589 | 13421733 | 13421589 | ID=MS.gene35820.t1.exon7;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13421589 | 13421733 | 13421589 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13421816 | 13421958 | 13421816 | ID=MS.gene35820.t1.exon8;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13421816 | 13421958 | 13421816 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13422040 | 13422096 | 13422040 | ID=MS.gene35820.t1.exon9;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13422040 | 13422096 | 13422040 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13422191 | 13422270 | 13422191 | ID=MS.gene35820.t1.exon10;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13422191 | 13422270 | 13422191 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13422364 | 13422439 | 13422364 | ID=MS.gene35820.t1.exon11;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13422364 | 13422439 | 13422364 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13423054 | 13423239 | 13423054 | ID=MS.gene35820.t1.exon12;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13423054 | 13423239 | 13423054 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13423404 | 13423471 | 13423404 | ID=MS.gene35820.t1.exon13;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13423404 | 13423471 | 13423404 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13423610 | 13423728 | 13423610 | ID=MS.gene35820.t1.exon14;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13423610 | 13423728 | 13423610 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13423878 | 13423999 | 13423878 | ID=MS.gene35820.t1.exon15;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13423878 | 13423999 | 13423878 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13425323 | 13425421 | 13425323 | ID=MS.gene35820.t1.exon16;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13425323 | 13425421 | 13425323 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13425516 | 13425995 | 13425516 | ID=MS.gene35820.t1.exon17;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13425516 | 13425995 | 13425516 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13426438 | 13426536 | 13426438 | ID=MS.gene35820.t1.exon18;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13426438 | 13426536 | 13426438 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13426651 | 13426893 | 13426651 | ID=MS.gene35820.t1.exon19;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13426651 | 13426893 | 13426651 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
chr2.1 | exon | 13427071 | 13427139 | 13427071 | ID=MS.gene35820.t1.exon20;Parent=MS.gene35820.t1 |
chr2.1 | CDS | 13427071 | 13427139 | 13427071 | ID=cds.MS.gene35820.t1;Parent=MS.gene35820.t1 |
Gene Sequence |
Protein sequence |