AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36024.t1 MTR_8g463380 94.050 437 20 5 1 435 1 433 0.0 691
MS.gene36024.t1 MTR_2g090960 42.105 399 145 12 35 426 2 321 1.86e-79 249
MS.gene36024.t1 MTR_4g079580 37.310 394 153 14 40 418 5 319 4.64e-56 189
MS.gene36024.t1 MTR_2g078200 87.059 85 11 0 40 124 3 87 6.20e-48 166
MS.gene36024.t1 MTR_2g078200 48.148 135 57 5 310 435 164 294 1.63e-14 74.3
MS.gene36024.t1 MTR_7g015010 61.842 76 29 0 51 126 51 126 1.01e-25 107
MS.gene36024.t1 MTR_4g109660 63.235 68 25 0 51 118 50 117 2.81e-22 97.1
MS.gene36024.t1 MTR_3g026050 45.370 108 54 1 11 118 16 118 7.19e-22 97.1
MS.gene36024.t1 MTR_6g015350 64.706 68 24 0 51 118 43 110 2.45e-21 94.7
MS.gene36024.t1 MTR_4g111935 42.424 99 54 2 33 130 110 206 7.72e-17 82.4
MS.gene36024.t1 MTR_1g103380 55.738 61 27 0 56 116 200 260 1.86e-16 81.6
MS.gene36024.t1 MTR_6g017055 50.769 65 32 0 51 115 120 184 8.74e-16 79.3
MS.gene36024.t1 MTR_7g018500 56.140 57 25 0 59 115 122 178 8.59e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36024.t1 AT1G53230 47.857 420 141 17 37 435 29 391 1.88e-96 295
MS.gene36024.t1 AT1G53230 47.857 420 141 17 37 435 29 391 1.88e-96 295
MS.gene36024.t1 AT3G15030 46.847 444 141 18 38 435 26 420 1.86e-95 293
MS.gene36024.t1 AT3G15030 46.847 444 141 18 38 435 26 420 1.86e-95 293
MS.gene36024.t1 AT3G15030 46.847 444 141 18 38 435 26 420 1.86e-95 293
MS.gene36024.t1 AT3G15030 46.847 444 141 18 38 435 26 420 1.86e-95 293
MS.gene36024.t1 AT2G31070 45.374 227 67 7 37 253 9 188 1.31e-45 162
MS.gene36024.t1 AT4G18390 70.588 68 20 0 51 118 36 103 3.34e-26 109
MS.gene36024.t1 AT4G18390 70.588 68 20 0 51 118 36 103 3.34e-26 109
MS.gene36024.t1 AT3G02150 68.116 69 22 0 51 119 68 136 1.61e-24 102
MS.gene36024.t1 AT3G02150 68.116 69 22 0 51 119 68 136 3.41e-24 103
MS.gene36024.t1 AT1G30210 63.768 69 25 0 50 118 43 111 1.56e-22 98.2
MS.gene36024.t1 AT1G30210 63.768 69 25 0 50 118 43 111 1.56e-22 98.2
MS.gene36024.t1 AT5G60970 60.294 68 27 0 51 118 57 124 7.87e-22 96.7
MS.gene36024.t1 AT5G08070 58.824 68 28 0 51 118 27 94 3.07e-21 92.8
MS.gene36024.t1 AT5G08070 58.824 68 28 0 51 118 27 94 3.07e-21 92.8
MS.gene36024.t1 AT1G68800 51.471 68 33 0 53 120 108 175 2.02e-19 89.7
MS.gene36024.t1 AT1G68800 51.471 68 33 0 53 120 108 175 2.11e-19 89.7
MS.gene36024.t1 AT1G67260 52.113 71 34 0 52 122 82 152 1.03e-18 87.4
MS.gene36024.t1 AT1G67260 52.113 71 34 0 52 122 82 152 1.03e-18 87.4
MS.gene36024.t1 AT1G67260 52.113 71 34 0 52 122 82 152 1.41e-18 87.0
MS.gene36024.t1 AT3G18550 50.000 64 32 0 53 116 144 207 1.18e-13 72.8
MS.gene36024.t1 AT3G18550 50.000 64 32 0 53 116 144 207 1.18e-13 72.8
MS.gene36024.t1 AT3G18550 50.000 64 32 0 53 116 144 207 1.19e-13 72.8
MS.gene36024.t1 AT3G18550 50.000 64 32 0 53 116 144 207 1.22e-13 72.8

Find 131 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTATACCAGCACGAATTC+AGG 0.286283 8.1:-52038137 MS.gene36024:CDS
ATCCATCAGGCTTCTGTCTC+TGG 0.301766 8.1:-52038178 MS.gene36024:CDS
GTCTCTGGTGGTGGATTCTC+AGG 0.305280 8.1:-52038163 MS.gene36024:CDS
GTAACCAAGGGAGGAGTTTC+CGG 0.306811 8.1:+52038525 None:intergenic
GCGCCGGCGTTTGGCGGTTA+TGG 0.318409 8.1:-52038325 MS.gene36024:CDS
GACGTCGTGGGCGTTTCAAC+TGG 0.345584 8.1:+52038718 None:intergenic
TCCGCTGCCGCTGATTCTCT+TGG 0.351084 8.1:+52039269 None:intergenic
TGGTGGCTCTGAAGCATAAT+AGG 0.365493 8.1:+52038595 None:intergenic
AGCGGCAGCGGAGGAGGAGG+AGG 0.369715 8.1:-52039258 MS.gene36024:CDS
ATCAGCGGCAGCGGAGGAGG+AGG 0.374612 8.1:-52039261 MS.gene36024:CDS
AGCCAATCGACTGCTTTACT+TGG 0.379997 8.1:+52039069 None:intergenic
AGTACACCGGCGCCGGCGTT+TGG 0.380968 8.1:-52038334 MS.gene36024:CDS
GAGTTCGTCGATAGCAGATT+TGG 0.383791 8.1:+52039035 None:intergenic
GGAAGCAGAGGACGGTTTAT+CGG 0.389422 8.1:+52038090 None:intergenic
TGACTGGTAGAAGCGGTTAC+TGG 0.399280 8.1:+52038904 None:intergenic
GGTCACATTGTCCGTTCAAC+AGG 0.417152 8.1:-52039213 MS.gene36024:CDS
TGTGGTGGTGGTGGTTGTCA+TGG 0.417396 8.1:+52038575 None:intergenic
TGTTGTCCACCGGAGATTGC+CGG 0.418132 8.1:+52038929 None:intergenic
CTGTTGCTGTTCCTGTGTGC+TGG 0.422018 8.1:+52039337 None:intergenic
CAGGCTTCTGTCTCTGGTGG+TGG 0.423247 8.1:-52038172 MS.gene36024:CDS
AGAATCAGCGGCAGCGGAGG+AGG 0.424143 8.1:-52039264 MS.gene36024:CDS
AGAGTCGTACGCGGCGGTCA+CGG 0.437341 8.1:+52039148 None:intergenic
AACTCGCTCACCTCCCTGCT+TGG 0.437620 8.1:-52039017 MS.gene36024:CDS
GGTAACATTGGCCATGGTGC+TGG 0.443548 8.1:-52038367 MS.gene36024:CDS
CTATCTCCAACTGTTGTTGT+TGG 0.445345 8.1:+52038827 None:intergenic
GAGTCGTACGCGGCGGTCAC+GGG 0.446966 8.1:+52039149 None:intergenic
ACGAATTGAAGGATTGTAAC+TGG 0.449007 8.1:+52038270 None:intergenic
ATGTTCGCCGTCGCCATTGA+AGG 0.449072 8.1:+52038235 None:intergenic
TATCTCCAACTGTTGTTGTT+GGG 0.450024 8.1:+52038828 None:intergenic
TTCGCCGGAAACTCCTCCCT+TGG 0.457148 8.1:-52038529 MS.gene36024:CDS
TGTTGTTGTTGTGGTGGTGG+TGG 0.476234 8.1:+52038566 None:intergenic
GTAGCTGTGGGGTTCCAAGC+AGG 0.479135 8.1:+52039003 None:intergenic
AGAGGCGGAGATCTTGCTGC+TGG 0.481925 8.1:+52038638 None:intergenic
GGTTACGACGGTGGTGGAAG+TGG 0.485371 8.1:-52038508 MS.gene36024:CDS
ACACCGGCGCCGGCGTTTGG+CGG 0.489761 8.1:-52038331 MS.gene36024:CDS
CGTATACCAGCACGAATTCA+GGG 0.492711 8.1:-52038136 MS.gene36024:CDS
TCCTTCCCAACAACAACAGT+TGG 0.493806 8.1:-52038833 MS.gene36024:CDS
ACAATCCTTCAATTCGTGCT+TGG 0.494531 8.1:-52038264 MS.gene36024:CDS
TCCAAGAGAATCAGCGGCAG+CGG 0.496376 8.1:-52039270 MS.gene36024:CDS
GCGGTCACGGGGACCTTTCG+CGG 0.503457 8.1:+52039161 None:intergenic
AAGAGAATCAGCGGCAGCGG+AGG 0.505536 8.1:-52039267 MS.gene36024:CDS
TCTTTCGCCGATGATCCATC+AGG 0.505750 8.1:-52038191 MS.gene36024:CDS
TAATGCCGCAGAGCGGTGAC+TGG 0.511644 8.1:+52038888 None:intergenic
TCCAACTGTTGTTGTTGGGA+AGG 0.512262 8.1:+52038832 None:intergenic
AATGTTTCACCGGCAATCTC+CGG 0.513568 8.1:-52038938 MS.gene36024:CDS
GAAGGAAATTGTTGTTCTTG+TGG 0.514512 8.1:+52038850 None:intergenic
TCCCTTGGTTACGACGGTGG+TGG 0.515901 8.1:-52038514 MS.gene36024:CDS
GGAGAAATCGTGGAGGTACA+AGG 0.518138 8.1:-52039237 MS.gene36024:CDS
TCTATCCAAGCACGAATTGA+AGG 0.524790 8.1:+52038259 None:intergenic
GCTGTTCGAGAGAGTAAATC+CGG 0.527015 8.1:+52038673 None:intergenic
AGTTTCCGGCGAAAAGCACT+TGG 0.528802 8.1:+52038539 None:intergenic
TCTTCACCCTGAATTCGTGC+TGG 0.532864 8.1:+52038130 None:intergenic
TAACCGCCAAACGCCGGCGC+CGG 0.534572 8.1:+52038328 None:intergenic
GGTCTTTGCGTCCTGTTGAA+CGG 0.539979 8.1:+52039202 None:intergenic
TGCTTGGATAGATCCTTCAA+TGG 0.540229 8.1:-52038248 MS.gene36024:CDS
AGGAGGAGGAGGAGAAATCG+TGG 0.541859 8.1:-52039247 MS.gene36024:CDS
TGTGTTCAGTACACCGGCGC+CGG 0.543712 8.1:-52038341 MS.gene36024:CDS
ATGCTGCTGCTCAGACCACA+AGG 0.547940 8.1:+52038480 None:intergenic
CACCAGAGACAGAAGCCTGA+TGG 0.548735 8.1:+52038176 None:intergenic
AGGATTGTAACTGGACTGAA+GGG 0.550029 8.1:+52038279 None:intergenic
CGGCAGATTGCATAGAATGA+TGG 0.550388 8.1:-52038431 MS.gene36024:CDS
GGTGGTGGTGGTTGTCATGG+TGG 0.551837 8.1:+52038578 None:intergenic
AAGGATTGTAACTGGACTGA+AGG 0.552738 8.1:+52038278 None:intergenic
GTTACTGGATTGTTGTCCAC+CGG 0.554367 8.1:+52038919 None:intergenic
GGCCAAGTAAAGCAGTCGAT+TGG 0.560622 8.1:-52039071 MS.gene36024:CDS
ACAACACACGACCAGCACAC+AGG 0.563376 8.1:-52039348 MS.gene36024:CDS
GCAGCATCAGCAGCATCAAG+AGG 0.566028 8.1:-52038464 MS.gene36024:CDS
GATTGCATAGAATGATGGCT+TGG 0.567846 8.1:-52038426 MS.gene36024:CDS
GCGAGAGTCGGAGGAAGCAG+AGG 0.568701 8.1:+52038078 None:intergenic
TAGCTGTGGGGTTCCAAGCA+GGG 0.568717 8.1:+52039004 None:intergenic
ACAGAAGCCTGATGGATCAT+CGG 0.568719 8.1:+52038184 None:intergenic
AGTAAAGTATGCACCGCGAA+AGG 0.570958 8.1:-52039174 MS.gene36024:CDS
AAACAAATGAAATGTTTCAC+CGG 0.571359 8.1:-52038948 MS.gene36024:CDS
GCCGCTGATTCTCTTGGACG+AGG 0.572452 8.1:+52039275 None:intergenic
TCGGCGAAAGATAGTGATGA+TGG 0.573536 8.1:+52038203 None:intergenic
TGACCATAACCGCCAAACGC+CGG 0.576444 8.1:+52038322 None:intergenic
AGTCGTACGCGGCGGTCACG+GGG 0.577670 8.1:+52039150 None:intergenic
GTAGAATTGAATCGCAGTGT+GGG 0.579117 8.1:+52039122 None:intergenic
GAGGCGGAGATCTTGCTGCT+GGG 0.582996 8.1:+52038639 None:intergenic
AAGATCGTCTCGGCTATGAC+AGG 0.584840 8.1:-52039092 MS.gene36024:CDS
TTCCACCACCGTCGTAACCA+AGG 0.587194 8.1:+52038512 None:intergenic
CAATCAATGGCGAGAGTCGG+AGG 0.587240 8.1:+52038069 None:intergenic
CGTAGAATTGAATCGCAGTG+TGG 0.587501 8.1:+52039121 None:intergenic
CATCAGGCTTCTGTCTCTGG+TGG 0.590853 8.1:-52038175 MS.gene36024:CDS
AACTCCTCCCTTGGTTACGA+CGG 0.591967 8.1:-52038520 MS.gene36024:CDS
GCTGCAGATGGTGGTAACAT+TGG 0.592253 8.1:-52038379 MS.gene36024:CDS
AGTAGTAGCAGTGGGAAACA+TGG 0.592595 8.1:-52038796 MS.gene36024:CDS
GGAAATTGTTGTTCTTGTGG+TGG 0.596044 8.1:+52038853 None:intergenic
TTCCAATCAATGGCGAGAGT+CGG 0.602863 8.1:+52038066 None:intergenic
AGCACGAATTCAGGGTGAAG+AGG 0.603117 8.1:-52038128 MS.gene36024:CDS
TGGATTTGTGTTCAGTACAC+CGG 0.603893 8.1:-52038347 MS.gene36024:CDS
TCCTCCCTTGGTTACGACGG+TGG 0.604523 8.1:-52038517 MS.gene36024:CDS
GATAGATCCTTCAATGGCGA+CGG 0.613580 8.1:-52038242 MS.gene36024:CDS
TCCACCACCGTCGTAACCAA+GGG 0.614166 8.1:+52038513 None:intergenic
GACTACAACAGTAGTAGCAG+TGG 0.615455 8.1:-52038805 MS.gene36024:CDS
GTTTCACCGGCAATCTCCGG+TGG 0.616152 8.1:-52038935 MS.gene36024:CDS
TACGACGTGCAAGATCGTCT+CGG 0.617162 8.1:-52039102 MS.gene36024:CDS
CGGTGCATACTTTACTGTGA+CGG 0.619367 8.1:+52039181 None:intergenic
ATAACTGTGAAACGACGTCG+TGG 0.622223 8.1:+52038705 None:intergenic
CTTGAAAAGATTGCAATGAG+AGG 0.622677 8.1:+52038620 None:intergenic
GAGTCGGAGGAAGCAGAGGA+CGG 0.623160 8.1:+52038082 None:intergenic
ACCTCGTCCAAGAGAATCAG+CGG 0.626058 8.1:-52039276 MS.gene36024:CDS
TGTTGAAGAACATGTAGCTG+TGG 0.626291 8.1:+52038990 None:intergenic
GTTGAAGAACATGTAGCTGT+GGG 0.630226 8.1:+52038991 None:intergenic
GAAAAGATTGCAATGAGAGG+CGG 0.637117 8.1:+52038623 None:intergenic
TCACAGTTATCAACAACCGC+CGG 0.637674 8.1:-52038692 MS.gene36024:CDS
GATGGTGGTAACATTGGCCA+TGG 0.638422 8.1:-52038373 MS.gene36024:CDS
GTCAATGCTAATGCTGCAGA+TGG 0.642955 8.1:-52038391 MS.gene36024:CDS
GCGGAGATCTTGCTGCTGGG+TGG 0.647953 8.1:+52038642 None:intergenic
GTGGAAGTGGAAGCACCTTG+TGG 0.652297 8.1:-52038495 MS.gene36024:CDS
ACCACCGTCGTAACCAAGGG+AGG 0.658945 8.1:+52038516 None:intergenic
ACTACAACAGTAGTAGCAGT+GGG 0.659751 8.1:-52038804 MS.gene36024:CDS
GGATTTACTCTCTCGAACAG+CGG 0.665722 8.1:-52038671 MS.gene36024:CDS
TAACTGTGAAACGACGTCGT+GGG 0.673437 8.1:+52038706 None:intergenic
AATGCTAATGCTGCAGATGG+TGG 0.679208 8.1:-52038388 MS.gene36024:CDS
AGAGCGGTGACTGGTAGAAG+CGG 0.679628 8.1:+52038897 None:intergenic
GGATTGTAACTGGACTGAAG+GGG 0.704803 8.1:+52038280 None:intergenic
TGAACACAAATCCAGCACCA+TGG 0.705786 8.1:+52038356 None:intergenic
TTTACTCTCTCGAACAGCGG+CGG 0.705963 8.1:-52038668 MS.gene36024:CDS
CATCAAGAGGAACATGACAA+CGG 0.706868 8.1:-52038451 MS.gene36024:CDS
TTCTACCAGTCACCGCTCTG+CGG 0.712108 8.1:-52038893 MS.gene36024:CDS
CTGTGGGGTTCCAAGCAGGG+AGG 0.716198 8.1:+52039007 None:intergenic
TGTGGGCTGAGAGTCGTACG+CGG 0.717449 8.1:+52039139 None:intergenic
AGGAGGAGGAGAAATCGTGG+AGG 0.725082 8.1:-52039244 MS.gene36024:CDS
ATTCAGGGTGAAGAGGAACA+CGG 0.726552 8.1:-52038121 MS.gene36024:CDS
TTCGCTCTAATGCCGCAGAG+CGG 0.740575 8.1:+52038881 None:intergenic
GAAATCGTGGAGGTACAAGG+AGG 0.742186 8.1:-52039234 MS.gene36024:CDS
GGGCTGAGAGTCGTACGCGG+CGG 0.755550 8.1:+52039142 None:intergenic
GTTCGAGAGAGTAAATCCGG+CGG 0.767784 8.1:+52038676 None:intergenic
TTGAAGAACATGTAGCTGTG+GGG 0.767979 8.1:+52038992 None:intergenic
CAGGGTGAAGAGGAACACGG+CGG 0.824868 8.1:-52038118 MS.gene36024:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAACAAATGAAATGTTTCAC+CGG - chr8.1:52038481-52038500 MS.gene36024:CDS 25.0%
ACGAATTGAAGGATTGTAAC+TGG + chr8.1:52039162-52039181 None:intergenic 35.0%
CTTGAAAAGATTGCAATGAG+AGG + chr8.1:52038812-52038831 None:intergenic 35.0%
! GAAGGAAATTGTTGTTCTTG+TGG + chr8.1:52038582-52038601 None:intergenic 35.0%
! TATCTCCAACTGTTGTTGTT+GGG + chr8.1:52038604-52038623 None:intergenic 35.0%
AAGGATTGTAACTGGACTGA+AGG + chr8.1:52039154-52039173 None:intergenic 40.0%
ACAATCCTTCAATTCGTGCT+TGG - chr8.1:52039165-52039184 MS.gene36024:CDS 40.0%
ACTACAACAGTAGTAGCAGT+GGG - chr8.1:52038625-52038644 MS.gene36024:CDS 40.0%
AGGATTGTAACTGGACTGAA+GGG + chr8.1:52039153-52039172 None:intergenic 40.0%
CATCAAGAGGAACATGACAA+CGG - chr8.1:52038978-52038997 MS.gene36024:CDS 40.0%
CTATCTCCAACTGTTGTTGT+TGG + chr8.1:52038605-52038624 None:intergenic 40.0%
GAAAAGATTGCAATGAGAGG+CGG + chr8.1:52038809-52038828 None:intergenic 40.0%
GATTGCATAGAATGATGGCT+TGG - chr8.1:52039003-52039022 MS.gene36024:CDS 40.0%
GTAGAATTGAATCGCAGTGT+GGG + chr8.1:52038310-52038329 None:intergenic 40.0%
GTTGAAGAACATGTAGCTGT+GGG + chr8.1:52038441-52038460 None:intergenic 40.0%
TCTATCCAAGCACGAATTGA+AGG + chr8.1:52039173-52039192 None:intergenic 40.0%
TGCTTGGATAGATCCTTCAA+TGG - chr8.1:52039181-52039200 MS.gene36024:CDS 40.0%
TGGATTTGTGTTCAGTACAC+CGG - chr8.1:52039082-52039101 MS.gene36024:CDS 40.0%
TGTTGAAGAACATGTAGCTG+TGG + chr8.1:52038442-52038461 None:intergenic 40.0%
TTGAAGAACATGTAGCTGTG+GGG + chr8.1:52038440-52038459 None:intergenic 40.0%
! ATGGTCAGCTTTTTACTCAG+AGG - chr8.1:52039123-52039142 MS.gene36024:CDS 40.0%
! CTTGGTTGTTGTTGTTGTTG+TGG + chr8.1:52038875-52038894 None:intergenic 40.0%
! GGAAATTGTTGTTCTTGTGG+TGG + chr8.1:52038579-52038598 None:intergenic 40.0%
! GGGAAACATGGTTTTCTTCA+AGG - chr8.1:52038645-52038664 MS.gene36024:CDS 40.0%
! TGGTCAGCTTTTTACTCAGA+GGG - chr8.1:52039124-52039143 MS.gene36024:CDS 40.0%
AATGCTAATGCTGCAGATGG+TGG - chr8.1:52039041-52039060 MS.gene36024:CDS 45.0%
AATGTTTCACCGGCAATCTC+CGG - chr8.1:52038491-52038510 MS.gene36024:CDS 45.0%
AGCCAATCGACTGCTTTACT+TGG + chr8.1:52038363-52038382 None:intergenic 45.0%
AGTAAAGTATGCACCGCGAA+AGG - chr8.1:52038255-52038274 MS.gene36024:CDS 45.0%
AGTAGTAGCAGTGGGAAACA+TGG - chr8.1:52038633-52038652 MS.gene36024:CDS 45.0%
ATAACTGTGAAACGACGTCG+TGG + chr8.1:52038727-52038746 None:intergenic 45.0%
ATTCAGGGTGAAGAGGAACA+CGG - chr8.1:52039308-52039327 MS.gene36024:CDS 45.0%
CGGCAGATTGCATAGAATGA+TGG - chr8.1:52038998-52039017 MS.gene36024:CDS 45.0%
CGGTGCATACTTTACTGTGA+CGG + chr8.1:52038251-52038270 None:intergenic 45.0%
CGTAGAATTGAATCGCAGTG+TGG + chr8.1:52038311-52038330 None:intergenic 45.0%
CGTATACCAGCACGAATTCA+GGG - chr8.1:52039293-52039312 MS.gene36024:CDS 45.0%
GACTACAACAGTAGTAGCAG+TGG - chr8.1:52038624-52038643 MS.gene36024:CDS 45.0%
GAGTTCGTCGATAGCAGATT+TGG + chr8.1:52038397-52038416 None:intergenic 45.0%
GATAGATCCTTCAATGGCGA+CGG - chr8.1:52039187-52039206 MS.gene36024:CDS 45.0%
GCTGTTCGAGAGAGTAAATC+CGG + chr8.1:52038759-52038778 None:intergenic 45.0%
GGATTGTAACTGGACTGAAG+GGG + chr8.1:52039152-52039171 None:intergenic 45.0%
GGATTTACTCTCTCGAACAG+CGG - chr8.1:52038758-52038777 MS.gene36024:CDS 45.0%
GTCAATGCTAATGCTGCAGA+TGG - chr8.1:52039038-52039057 MS.gene36024:CDS 45.0%
GTTACTGGATTGTTGTCCAC+CGG + chr8.1:52038513-52038532 None:intergenic 45.0%
TAACTGTGAAACGACGTCGT+GGG + chr8.1:52038726-52038745 None:intergenic 45.0%
TCACAGTTATCAACAACCGC+CGG - chr8.1:52038737-52038756 MS.gene36024:CDS 45.0%
TCCTTCCCAACAACAACAGT+TGG - chr8.1:52038596-52038615 MS.gene36024:CDS 45.0%
TCGGCGAAAGATAGTGATGA+TGG + chr8.1:52039229-52039248 None:intergenic 45.0%
TCGTATACCAGCACGAATTC+AGG - chr8.1:52039292-52039311 MS.gene36024:CDS 45.0%
TGAACACAAATCCAGCACCA+TGG + chr8.1:52039076-52039095 None:intergenic 45.0%
! AACAACCAAGTGCTTTTCGC+CGG - chr8.1:52038885-52038904 MS.gene36024:CDS 45.0%
! ACAGAAGCCTGATGGATCAT+CGG + chr8.1:52039248-52039267 None:intergenic 45.0%
! GGTCAGCTTTTTACTCAGAG+GGG - chr8.1:52039125-52039144 MS.gene36024:CDS 45.0%
! GGTTGTTGTTGTTGTTGTGG+TGG + chr8.1:52038872-52038891 None:intergenic 45.0%
! TCCAACTGTTGTTGTTGGGA+AGG + chr8.1:52038600-52038619 None:intergenic 45.0%
! TGTTGTTGTTGTTGTGGTGG+TGG + chr8.1:52038869-52038888 None:intergenic 45.0%
!! TGGTGGCTCTGAAGCATAAT+AGG + chr8.1:52038837-52038856 None:intergenic 45.0%
AACTCCTCCCTTGGTTACGA+CGG - chr8.1:52038909-52038928 MS.gene36024:CDS 50.0%
AAGATCGTCTCGGCTATGAC+AGG - chr8.1:52038337-52038356 MS.gene36024:CDS 50.0%
ACCTCGTCCAAGAGAATCAG+CGG - chr8.1:52038153-52038172 MS.gene36024:CDS 50.0%
AGCACGAATTCAGGGTGAAG+AGG - chr8.1:52039301-52039320 MS.gene36024:CDS 50.0%
ATCCATCAGGCTTCTGTCTC+TGG - chr8.1:52039251-52039270 MS.gene36024:CDS 50.0%
GGAAGCAGAGGACGGTTTAT+CGG + chr8.1:52039342-52039361 None:intergenic 50.0%
GGCCAAGTAAAGCAGTCGAT+TGG - chr8.1:52038358-52038377 MS.gene36024:CDS 50.0%
GGTCACATTGTCCGTTCAAC+AGG - chr8.1:52038216-52038235 MS.gene36024:CDS 50.0%
GGTCTTTGCGTCCTGTTGAA+CGG + chr8.1:52038230-52038249 None:intergenic 50.0%
GTAACCAAGGGAGGAGTTTC+CGG + chr8.1:52038907-52038926 None:intergenic 50.0%
GTTCGAGAGAGTAAATCCGG+CGG + chr8.1:52038756-52038775 None:intergenic 50.0%
TACGACGTGCAAGATCGTCT+CGG - chr8.1:52038327-52038346 MS.gene36024:CDS 50.0%
TCTTCACCCTGAATTCGTGC+TGG + chr8.1:52039302-52039321 None:intergenic 50.0%
TCTTTCGCCGATGATCCATC+AGG - chr8.1:52039238-52039257 MS.gene36024:CDS 50.0%
TGACTGGTAGAAGCGGTTAC+TGG + chr8.1:52038528-52038547 None:intergenic 50.0%
TTTACTCTCTCGAACAGCGG+CGG - chr8.1:52038761-52038780 MS.gene36024:CDS 50.0%
! GAAATCGTGGAGGTACAAGG+AGG - chr8.1:52038195-52038214 MS.gene36024:CDS 50.0%
! GATGGTGGTAACATTGGCCA+TGG - chr8.1:52039056-52039075 MS.gene36024:CDS 50.0%
! GCTGCAGATGGTGGTAACAT+TGG - chr8.1:52039050-52039069 MS.gene36024:CDS 50.0%
! GGAGAAATCGTGGAGGTACA+AGG - chr8.1:52038192-52038211 MS.gene36024:CDS 50.0%
!! AGTTTCCGGCGAAAAGCACT+TGG + chr8.1:52038893-52038912 None:intergenic 50.0%
!! TGTTGTTGTTGTGGTGGTGG+TGG + chr8.1:52038866-52038885 None:intergenic 50.0%
ACAACACACGACCAGCACAC+AGG - chr8.1:52038081-52038100 MS.gene36024:CDS 55.0%
AGAGCGGTGACTGGTAGAAG+CGG + chr8.1:52038535-52038554 None:intergenic 55.0%
AGGAGGAGGAGAAATCGTGG+AGG - chr8.1:52038185-52038204 MS.gene36024:CDS 55.0%
AGGAGGAGGAGGAGAAATCG+TGG - chr8.1:52038182-52038201 MS.gene36024:CDS 55.0%
ATGCTGCTGCTCAGACCACA+AGG + chr8.1:52038952-52038971 None:intergenic 55.0%
ATGTTCGCCGTCGCCATTGA+AGG + chr8.1:52039197-52039216 None:intergenic 55.0%
CACCAGAGACAGAAGCCTGA+TGG + chr8.1:52039256-52039275 None:intergenic 55.0%
CATCAGGCTTCTGTCTCTGG+TGG - chr8.1:52039254-52039273 MS.gene36024:CDS 55.0%
GCAGCATCAGCAGCATCAAG+AGG - chr8.1:52038965-52038984 MS.gene36024:CDS 55.0%
GGTAACATTGGCCATGGTGC+TGG - chr8.1:52039062-52039081 MS.gene36024:CDS 55.0%
TAGCTGTGGGGTTCCAAGCA+GGG + chr8.1:52038428-52038447 None:intergenic 55.0%
TCCAAGAGAATCAGCGGCAG+CGG - chr8.1:52038159-52038178 MS.gene36024:CDS 55.0%
TCCACCACCGTCGTAACCAA+GGG + chr8.1:52038919-52038938 None:intergenic 55.0%
TGACCATAACCGCCAAACGC+CGG + chr8.1:52039110-52039129 None:intergenic 55.0%
TGTTGTCCACCGGAGATTGC+CGG + chr8.1:52038503-52038522 None:intergenic 55.0%
TTCCACCACCGTCGTAACCA+AGG + chr8.1:52038920-52038939 None:intergenic 55.0%
TTCGCTCTAATGCCGCAGAG+CGG + chr8.1:52038551-52038570 None:intergenic 55.0%
TTCTACCAGTCACCGCTCTG+CGG - chr8.1:52038536-52038555 MS.gene36024:CDS 55.0%
! CTGTTGCTGTTCCTGTGTGC+TGG + chr8.1:52038095-52038114 None:intergenic 55.0%
!! GTCTCTGGTGGTGGATTCTC+AGG - chr8.1:52039266-52039285 MS.gene36024:CDS 55.0%
!! GTGGAAGTGGAAGCACCTTG+TGG - chr8.1:52038934-52038953 MS.gene36024:CDS 55.0%
!! TGTGGTGGTGGTGGTTGTCA+TGG + chr8.1:52038857-52038876 None:intergenic 55.0%
AACTCGCTCACCTCCCTGCT+TGG - chr8.1:52038412-52038431 MS.gene36024:CDS 60.0%
AAGAGAATCAGCGGCAGCGG+AGG - chr8.1:52038162-52038181 MS.gene36024:CDS 60.0%
ACCACCGTCGTAACCAAGGG+AGG + chr8.1:52038916-52038935 None:intergenic 60.0%
AGAGGCGGAGATCTTGCTGC+TGG + chr8.1:52038794-52038813 None:intergenic 60.0%
CAGGCTTCTGTCTCTGGTGG+TGG - chr8.1:52039257-52039276 MS.gene36024:CDS 60.0%
CAGGGTGAAGAGGAACACGG+CGG - chr8.1:52039311-52039330 MS.gene36024:CDS 60.0%
GACGTCGTGGGCGTTTCAAC+TGG + chr8.1:52038714-52038733 None:intergenic 60.0%
GAGGCGGAGATCTTGCTGCT+GGG + chr8.1:52038793-52038812 None:intergenic 60.0%
GAGTCGGAGGAAGCAGAGGA+CGG + chr8.1:52039350-52039369 None:intergenic 60.0%
GTAGCTGTGGGGTTCCAAGC+AGG + chr8.1:52038429-52038448 None:intergenic 60.0%
GTTTCACCGGCAATCTCCGG+TGG - chr8.1:52038494-52038513 MS.gene36024:CDS 60.0%
TAATGCCGCAGAGCGGTGAC+TGG + chr8.1:52038544-52038563 None:intergenic 60.0%
TCCCTTGGTTACGACGGTGG+TGG - chr8.1:52038915-52038934 MS.gene36024:CDS 60.0%
TCCTCCCTTGGTTACGACGG+TGG - chr8.1:52038912-52038931 MS.gene36024:CDS 60.0%
TGTGTTCAGTACACCGGCGC+CGG - chr8.1:52039088-52039107 MS.gene36024:CDS 60.0%
TTCGCCGGAAACTCCTCCCT+TGG - chr8.1:52038900-52038919 MS.gene36024:CDS 60.0%
! GTTTGCTGCTGCTGCTGCTG+TGG + chr8.1:52038465-52038484 None:intergenic 60.0%
! TGTGGGCTGAGAGTCGTACG+CGG + chr8.1:52038293-52038312 None:intergenic 60.0%
!! GCCGCTGATTCTCTTGGACG+AGG + chr8.1:52038157-52038176 None:intergenic 60.0%
!! GGTGGTGGTGGTTGTCATGG+TGG + chr8.1:52038854-52038873 None:intergenic 60.0%
!! GGTTACGACGGTGGTGGAAG+TGG - chr8.1:52038921-52038940 MS.gene36024:CDS 60.0%
!! TCCGCTGCCGCTGATTCTCT+TGG + chr8.1:52038163-52038182 None:intergenic 60.0%
AGAATCAGCGGCAGCGGAGG+AGG - chr8.1:52038165-52038184 MS.gene36024:CDS 65.0%
AGAGTCGTACGCGGCGGTCA+CGG + chr8.1:52038284-52038303 None:intergenic 65.0%
CTGTGGGGTTCCAAGCAGGG+AGG + chr8.1:52038425-52038444 None:intergenic 65.0%
GCGAGAGTCGGAGGAAGCAG+AGG + chr8.1:52039354-52039373 None:intergenic 65.0%
GCGGAGATCTTGCTGCTGGG+TGG + chr8.1:52038790-52038809 None:intergenic 65.0%
AGTCGTACGCGGCGGTCACG+GGG + chr8.1:52038282-52038301 None:intergenic 70.0%
ATCAGCGGCAGCGGAGGAGG+AGG - chr8.1:52038168-52038187 MS.gene36024:CDS 70.0%
GAGTCGTACGCGGCGGTCAC+GGG + chr8.1:52038283-52038302 None:intergenic 70.0%
GCGGTCACGGGGACCTTTCG+CGG + chr8.1:52038271-52038290 None:intergenic 70.0%
GGGCTGAGAGTCGTACGCGG+CGG + chr8.1:52038290-52038309 None:intergenic 70.0%
TAACCGCCAAACGCCGGCGC+CGG + chr8.1:52039104-52039123 None:intergenic 70.0%
! GCGCCGGCGTTTGGCGGTTA+TGG - chr8.1:52039104-52039123 MS.gene36024:CDS 70.0%
!! AGTACACCGGCGCCGGCGTT+TGG - chr8.1:52039095-52039114 MS.gene36024:CDS 70.0%
AGCGGCAGCGGAGGAGGAGG+AGG - chr8.1:52038171-52038190 MS.gene36024:CDS 75.0%
!! ACACCGGCGCCGGCGTTTGG+CGG - chr8.1:52039098-52039117 MS.gene36024:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 52038072 52039379 52038072 ID=MS.gene36024
chr8.1 mRNA 52038072 52039379 52038072 ID=MS.gene36024.t1;Parent=MS.gene36024
chr8.1 exon 52038072 52039379 52038072 ID=MS.gene36024.t1.exon1;Parent=MS.gene36024.t1
chr8.1 CDS 52038072 52039379 52038072 ID=cds.MS.gene36024.t1;Parent=MS.gene36024.t1
Gene Sequence

>MS.gene36024

ATGGGAGAAACAACACACGACCAGCACACAGGAACAGCAACAGCAACAGCTACATCAACATCAACAAAAACAGCAGCAACAACCTCGTCCAAGAGAATCAGCGGCAGCGGAGGAGGAGGAGGAGAAATCGTGGAGGTACAAGGAGGTCACATTGTCCGTTCAACAGGACGCAAAGACCGTCACAGTAAAGTATGCACCGCGAAAGGTCCCCGTGACCGCCGCGTACGACTCTCAGCCCACACTGCGATTCAATTCTACGACGTGCAAGATCGTCTCGGCTATGACAGGCCAAGTAAAGCAGTCGATTGGCTCATTAAAAAAGCCAAATCTGCTATCGACGAACTCGCTCACCTCCCTGCTTGGAACCCCACAGCTACATGTTCTTCAACACCACAGCAGCAGCAGCAGCAAACAAATGAAATGTTTCACCGGCAATCTCCGGTGGACAACAATCCAGTAACCGCTTCTACCAGTCACCGCTCTGCGGCATTAGAGCGAAGAATGCCACCACAAGAACAACAATTTCCTTCCCAACAACAACAGTTGGAGATAGACTACAACAGTAGTAGCAGTGGGAAACATGGTTTTCTTCAAGGCTCGTTAGACACTGACATTGCTGATACTATTAAGTCTTTTTTTCCAGTTGAAACGCCCACGACGTCGTTTCACAGTTATCAACAACCGCCGGATTTACTCTCTCGAACAGCGGCGGCAACCACCCAGCAGCAAGATCTCCGCCTCTCATTGCAATCTTTTCAAGATCCTATTATGCTTCAGAGCCACCATGACAACCACCACCACCACAACAACAACAACAACCAAGTGCTTTTCGCCGGAAACTCCTCCCTTGGTTACGACGGTGGTGGAAGTGGAAGCACCTTGTGGTCTGAGCAGCAGCATCAGCAGCATCAAGAGGAACATGACAACGGCAGATTGCATAGAATGATGGCTTGGAATGCTAATAATGTCAATGCTAATGCTGCAGATGGTGGTAACATTGGCCATGGTGCTGGATTTGTGTTCAGTACACCGGCGCCGGCGTTTGGCGGTTATGGTCAGCTTTTTACTCAGAGGGGACCCCTTCAGTCCAGTTACAATCCTTCAATTCGTGCTTGGATAGATCCTTCAATGGCGACGGCGAACATCGCTGATCACCATCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGTCTCTGGTGGTGGATTCTCAGGCTTTCGTATACCAGCACGAATTCAGGGTGAAGAGGAACACGGCGGCGTATCCGATAAACCGTCCTCTGCTTCCTCCGACTCTCGCCATTGA
Protein sequence

>MS.gene36024.t1

MGETTHDQHTGTATATATSTSTKTAATTSSKRISGSGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAHLPAWNPTATCSSTPQQQQQQTNEMFHRQSPVDNNPVTASTSHRSAALERRMPPQEQQFPSQQQQLEIDYNSSSSGKHGFLQGSLDTDIADTIKSFFPVETPTTSFHSYQQPPDLLSRTAAATTQQQDLRLSLQSFQDPIMLQSHHDNHHHHNNNNNQVLFAGNSSLGYDGGGSGSTLWSEQQHQQHQEEHDNGRLHRMMAWNANNVNANAADGGNIGHGAGFVFSTPAPAFGGYGQLFTQRGPLQSSYNPSIRAWIDPSMATANIADHHHHYLSPMIHQASVSGGGFSGFRIPARIQGEEEHGGVSDKPSSASSDSRH