Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36109.t1 | XP_003628404.1 | 94.5 | 219 | 12 | 0 | 1 | 219 | 1 | 219 | 5.50E-117 | 430.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36109.t1 | P49332 | 68.8 | 218 | 67 | 1 | 3 | 219 | 4 | 221 | 2.0e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36109.t1 | G7LB15 | 94.5 | 219 | 12 | 0 | 1 | 219 | 1 | 219 | 4.0e-117 | 430.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052176 | MS.gene36109 | 0.807384 | 5.19E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene36109 | 0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene36109 | 0.800305 | 1.53E-48 | -1.69E-46 |
| MS.gene052856 | MS.gene36109 | 0.808845 | 2.54E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene36109 | 0.80394 | 2.74E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene36109 | 0.850078 | 2.14E-60 | -1.69E-46 |
| MS.gene060084 | MS.gene36109 | 0.805661 | 1.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36109.t1 | MTR_8g056940 | 94.521 | 219 | 12 | 0 | 1 | 219 | 1 | 219 | 3.21e-153 | 424 |
| MS.gene36109.t1 | MTR_2g070060 | 67.123 | 219 | 72 | 0 | 1 | 219 | 1 | 219 | 1.53e-107 | 308 |
| MS.gene36109.t1 | MTR_2g070070 | 65.753 | 219 | 75 | 0 | 1 | 219 | 1 | 219 | 4.19e-104 | 300 |
| MS.gene36109.t1 | MTR_2g070180 | 65.421 | 214 | 74 | 0 | 1 | 214 | 1 | 214 | 8.10e-102 | 294 |
| MS.gene36109.t1 | MTR_4g124130 | 63.636 | 220 | 79 | 1 | 1 | 219 | 1 | 220 | 7.98e-100 | 289 |
| MS.gene36109.t1 | MTR_2g070150 | 66.832 | 202 | 67 | 0 | 1 | 202 | 1 | 202 | 1.77e-98 | 285 |
| MS.gene36109.t1 | MTR_2g070110 | 63.014 | 219 | 80 | 1 | 1 | 219 | 1 | 218 | 5.91e-97 | 281 |
| MS.gene36109.t1 | MTR_2g070130 | 59.817 | 219 | 88 | 0 | 1 | 219 | 1 | 219 | 6.68e-97 | 281 |
| MS.gene36109.t1 | MTR_2g070140 | 65.025 | 203 | 71 | 0 | 17 | 219 | 1 | 203 | 1.29e-96 | 280 |
| MS.gene36109.t1 | MTR_0186s0030 | 96.454 | 141 | 5 | 0 | 1 | 141 | 1 | 141 | 8.62e-95 | 273 |
| MS.gene36109.t1 | MTR_2g070200 | 60.455 | 220 | 85 | 2 | 1 | 218 | 1 | 220 | 4.62e-93 | 271 |
| MS.gene36109.t1 | MTR_3g467420 | 55.349 | 215 | 96 | 0 | 5 | 219 | 10 | 224 | 4.36e-92 | 269 |
| MS.gene36109.t1 | MTR_2g070210 | 59.722 | 216 | 85 | 1 | 1 | 214 | 1 | 216 | 1.71e-91 | 268 |
| MS.gene36109.t1 | MTR_3g467430 | 54.839 | 217 | 98 | 0 | 3 | 219 | 8 | 224 | 5.34e-91 | 266 |
| MS.gene36109.t1 | MTR_2g070120 | 56.338 | 213 | 93 | 0 | 1 | 213 | 1 | 213 | 3.25e-84 | 249 |
| MS.gene36109.t1 | MTR_5g076900 | 51.402 | 214 | 102 | 2 | 2 | 214 | 4 | 216 | 6.95e-72 | 218 |
| MS.gene36109.t1 | MTR_1g090060 | 40.394 | 203 | 116 | 3 | 11 | 209 | 10 | 211 | 2.51e-44 | 148 |
| MS.gene36109.t1 | MTR_4g059730 | 40.376 | 213 | 122 | 3 | 1 | 209 | 1 | 212 | 5.75e-44 | 147 |
| MS.gene36109.t1 | MTR_7g065720 | 39.091 | 220 | 127 | 5 | 3 | 217 | 6 | 223 | 9.78e-44 | 146 |
| MS.gene36109.t1 | MTR_7g065750 | 39.726 | 219 | 123 | 5 | 3 | 217 | 6 | 219 | 1.44e-43 | 146 |
| MS.gene36109.t1 | MTR_5g037380 | 45.685 | 197 | 92 | 6 | 2 | 186 | 3 | 196 | 1.52e-43 | 146 |
| MS.gene36109.t1 | MTR_5g040430 | 35.071 | 211 | 130 | 2 | 2 | 205 | 5 | 215 | 3.21e-43 | 145 |
| MS.gene36109.t1 | MTR_4g019780 | 38.278 | 209 | 124 | 4 | 3 | 208 | 7 | 213 | 5.69e-43 | 144 |
| MS.gene36109.t1 | MTR_7g065740 | 40.183 | 219 | 122 | 5 | 3 | 217 | 6 | 219 | 7.66e-43 | 144 |
| MS.gene36109.t1 | MTR_7g065660 | 39.234 | 209 | 122 | 4 | 3 | 208 | 6 | 212 | 2.17e-42 | 143 |
| MS.gene36109.t1 | MTR_8g087425 | 35.945 | 217 | 136 | 2 | 2 | 216 | 3 | 218 | 3.28e-42 | 142 |
| MS.gene36109.t1 | MTR_3g099757 | 46.023 | 176 | 93 | 2 | 1 | 175 | 1 | 175 | 9.39e-42 | 141 |
| MS.gene36109.t1 | MTR_7g065630 | 44.624 | 186 | 98 | 5 | 3 | 187 | 24 | 205 | 6.55e-41 | 139 |
| MS.gene36109.t1 | MTR_4g019790 | 38.942 | 208 | 122 | 4 | 4 | 208 | 7 | 212 | 1.12e-40 | 139 |
| MS.gene36109.t1 | MTR_1g090100 | 41.584 | 202 | 113 | 3 | 11 | 208 | 9 | 209 | 5.95e-40 | 136 |
| MS.gene36109.t1 | MTR_1g090070 | 39.070 | 215 | 117 | 5 | 4 | 209 | 9 | 218 | 2.87e-39 | 135 |
| MS.gene36109.t1 | MTR_7g065710 | 46.667 | 165 | 83 | 4 | 1 | 162 | 1 | 163 | 2.01e-38 | 132 |
| MS.gene36109.t1 | MTR_8g087410 | 40.331 | 181 | 105 | 2 | 7 | 185 | 9 | 188 | 2.52e-38 | 132 |
| MS.gene36109.t1 | MTR_7g065265 | 39.234 | 209 | 117 | 6 | 13 | 217 | 16 | 218 | 3.70e-38 | 132 |
| MS.gene36109.t1 | MTR_8g061950 | 40.909 | 198 | 108 | 5 | 7 | 195 | 8 | 205 | 5.57e-38 | 132 |
| MS.gene36109.t1 | MTR_1g090090 | 40.594 | 202 | 115 | 4 | 11 | 208 | 10 | 210 | 9.17e-38 | 131 |
| MS.gene36109.t1 | MTR_7g065270 | 37.981 | 208 | 121 | 5 | 13 | 217 | 16 | 218 | 9.42e-38 | 131 |
| MS.gene36109.t1 | MTR_7g065590 | 38.308 | 201 | 117 | 5 | 3 | 199 | 6 | 203 | 2.44e-36 | 127 |
| MS.gene36109.t1 | MTR_6g080440 | 38.350 | 206 | 117 | 5 | 18 | 216 | 17 | 219 | 2.80e-36 | 127 |
| MS.gene36109.t1 | MTR_7g065230 | 38.942 | 208 | 114 | 7 | 13 | 217 | 16 | 213 | 3.33e-36 | 127 |
| MS.gene36109.t1 | MTR_1g090150 | 36.493 | 211 | 126 | 5 | 11 | 216 | 10 | 217 | 7.61e-36 | 126 |
| MS.gene36109.t1 | MTR_1g115195 | 38.614 | 202 | 114 | 4 | 7 | 201 | 6 | 204 | 8.28e-36 | 126 |
| MS.gene36109.t1 | MTR_7g065290 | 37.019 | 208 | 123 | 5 | 13 | 217 | 16 | 218 | 9.25e-36 | 126 |
| MS.gene36109.t1 | MTR_7g065680 | 46.296 | 162 | 82 | 4 | 3 | 161 | 6 | 165 | 2.25e-35 | 125 |
| MS.gene36109.t1 | MTR_7g065600 | 40.741 | 189 | 105 | 5 | 3 | 187 | 6 | 191 | 3.08e-34 | 122 |
| MS.gene36109.t1 | MTR_7g065700 | 38.278 | 209 | 120 | 5 | 3 | 208 | 6 | 208 | 2.64e-33 | 119 |
| MS.gene36109.t1 | MTR_7g065640 | 44.928 | 138 | 74 | 2 | 3 | 139 | 6 | 142 | 3.52e-33 | 119 |
| MS.gene36109.t1 | MTR_7g065260 | 37.766 | 188 | 112 | 4 | 3 | 187 | 13 | 198 | 1.11e-31 | 115 |
| MS.gene36109.t1 | MTR_2g072120 | 66.667 | 72 | 24 | 0 | 47 | 118 | 1 | 72 | 5.80e-30 | 106 |
| MS.gene36109.t1 | MTR_4g043640 | 67.742 | 62 | 14 | 2 | 131 | 190 | 29 | 86 | 6.09e-22 | 86.3 |
| MS.gene36109.t1 | MTR_7g100320 | 29.108 | 213 | 133 | 8 | 10 | 216 | 32 | 232 | 3.72e-13 | 66.6 |
| MS.gene36109.t1 | MTR_5g037390 | 45.205 | 73 | 38 | 1 | 28 | 98 | 11 | 83 | 3.03e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36109.t1 | AT1G78380 | 64.352 | 216 | 77 | 0 | 1 | 216 | 1 | 216 | 6.56e-100 | 289 |
| MS.gene36109.t1 | AT1G78370 | 60.465 | 215 | 85 | 0 | 1 | 215 | 1 | 215 | 3.39e-97 | 282 |
| MS.gene36109.t1 | AT1G17170 | 61.187 | 219 | 84 | 1 | 1 | 219 | 1 | 218 | 2.28e-96 | 280 |
| MS.gene36109.t1 | AT1G17180 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 2.69e-96 | 280 |
| MS.gene36109.t1 | AT1G78340 | 61.682 | 214 | 82 | 0 | 1 | 214 | 1 | 214 | 3.75e-95 | 277 |
| MS.gene36109.t1 | AT1G78360 | 60.455 | 220 | 86 | 1 | 1 | 219 | 1 | 220 | 1.01e-94 | 276 |
| MS.gene36109.t1 | AT1G78320 | 60.280 | 214 | 85 | 0 | 1 | 214 | 1 | 214 | 7.53e-90 | 263 |
| MS.gene36109.t1 | AT1G17190 | 55.607 | 214 | 95 | 0 | 3 | 216 | 4 | 217 | 5.17e-86 | 254 |
| MS.gene36109.t1 | AT1G53680 | 53.456 | 217 | 99 | 2 | 5 | 219 | 8 | 224 | 7.16e-84 | 248 |
| MS.gene36109.t1 | AT3G43800 | 54.245 | 212 | 93 | 3 | 3 | 210 | 4 | 215 | 7.19e-75 | 226 |
| MS.gene36109.t1 | AT1G78320 | 51.402 | 214 | 77 | 1 | 1 | 214 | 1 | 187 | 4.00e-69 | 210 |
| MS.gene36109.t1 | AT3G09270 | 47.340 | 188 | 96 | 2 | 3 | 187 | 5 | 192 | 1.76e-47 | 156 |
| MS.gene36109.t1 | AT2G29420 | 40.187 | 214 | 117 | 5 | 2 | 209 | 7 | 215 | 8.19e-47 | 154 |
| MS.gene36109.t1 | AT1G10360 | 42.564 | 195 | 104 | 4 | 2 | 188 | 3 | 197 | 1.27e-43 | 146 |
| MS.gene36109.t1 | AT1G74590 | 35.000 | 220 | 131 | 4 | 5 | 215 | 8 | 224 | 1.78e-43 | 146 |
| MS.gene36109.t1 | AT1G10370 | 38.426 | 216 | 125 | 4 | 2 | 209 | 3 | 218 | 2.12e-43 | 145 |
| MS.gene36109.t1 | AT1G59670 | 40.541 | 222 | 123 | 5 | 3 | 215 | 5 | 226 | 7.30e-42 | 142 |
| MS.gene36109.t1 | AT2G29460 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 1.54e-41 | 140 |
| MS.gene36109.t1 | AT1G59700 | 39.910 | 223 | 123 | 6 | 3 | 215 | 5 | 226 | 4.16e-41 | 140 |
| MS.gene36109.t1 | AT2G29490 | 45.963 | 161 | 83 | 2 | 3 | 160 | 6 | 165 | 7.68e-41 | 139 |
| MS.gene36109.t1 | AT2G29480 | 45.342 | 161 | 84 | 2 | 3 | 160 | 6 | 165 | 8.79e-41 | 139 |
| MS.gene36109.t1 | AT2G29450 | 49.080 | 163 | 76 | 4 | 3 | 160 | 5 | 165 | 1.90e-40 | 138 |
| MS.gene36109.t1 | AT2G29440 | 47.879 | 165 | 74 | 4 | 3 | 160 | 5 | 164 | 2.39e-40 | 137 |
| MS.gene36109.t1 | AT1G27140 | 40.000 | 205 | 113 | 4 | 15 | 209 | 17 | 221 | 4.13e-40 | 137 |
| MS.gene36109.t1 | AT2G29470 | 39.500 | 200 | 114 | 5 | 7 | 201 | 10 | 207 | 1.53e-39 | 135 |
| MS.gene36109.t1 | AT1G27130 | 36.199 | 221 | 129 | 5 | 7 | 218 | 9 | 226 | 1.53e-39 | 135 |
| MS.gene36109.t1 | AT5G62480 | 37.430 | 179 | 104 | 1 | 5 | 175 | 9 | 187 | 1.93e-38 | 133 |
| MS.gene36109.t1 | AT1G69920 | 35.874 | 223 | 127 | 6 | 7 | 218 | 37 | 254 | 2.98e-37 | 130 |
| MS.gene36109.t1 | AT1G69930 | 34.762 | 210 | 130 | 3 | 7 | 209 | 15 | 224 | 5.61e-35 | 124 |
| MS.gene36109.t1 | AT5G62480 | 29.050 | 179 | 92 | 2 | 5 | 175 | 9 | 160 | 5.21e-21 | 87.4 |
| MS.gene36109.t1 | AT5G62480 | 29.050 | 179 | 93 | 2 | 5 | 175 | 9 | 161 | 7.28e-21 | 87.0 |
Find 48 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.160142 | 8.3:-52558659 | MS.gene36109:CDS |
| ATGATGATGGATTCACAAAT+TGG | 0.232208 | 8.3:+52558744 | None:intergenic |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8.3:-52558873 | MS.gene36109:CDS |
| CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8.3:-52558079 | MS.gene36109:CDS |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8.3:-52558116 | MS.gene36109:CDS |
| TTTCTCATCCGCAACAGATT+TGG | 0.278908 | 8.3:+52557907 | None:intergenic |
| CTTTGATCCCTTTCTATAGT+TGG | 0.290757 | 8.3:-52558027 | MS.gene36109:CDS |
| ACAGGAATCTTCTTGTGAAT+TGG | 0.294136 | 8.3:+52558786 | None:intergenic |
| CTATAGGAAGAGGTTTGATT+TGG | 0.319582 | 8.3:-52557861 | MS.gene36109:CDS |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8.3:+52558808 | None:intergenic |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | 8.3:-52558174 | MS.gene36109:CDS |
| CTTGCTTGAGCTTTCTCATA+AGG | 0.355050 | 8.3:+52558666 | None:intergenic |
| GATGAATGGCTTAGTATGTT+TGG | 0.382908 | 8.3:-52558906 | MS.gene36109:CDS |
| AGTTAATATTGTTGGATGAA+TGG | 0.397050 | 8.3:-52558920 | MS.gene36109:CDS |
| GGCAGAGGAGTTAATATTGT+TGG | 0.402522 | 8.3:-52558928 | MS.gene36109:CDS |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8.3:-52558146 | MS.gene36109:CDS |
| GATTCCTGTTCTTATCCATA+AGG | 0.424595 | 8.3:-52558772 | MS.gene36109:CDS |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8.3:-52558719 | MS.gene36109:CDS |
| AATGTGTCACCACCAAAATA+AGG | 0.439985 | 8.3:+52558067 | None:intergenic |
| TGATGAGGTTTGGAAGGATA+AGG | 0.440755 | 8.3:-52558709 | MS.gene36109:CDS |
| TGAGATTGAATTGGCAAAGA+AGG | 0.443100 | 8.3:-52558137 | MS.gene36109:CDS |
| TTTCCCTTATGGATAAGAAC+AGG | 0.445569 | 8.3:+52558768 | None:intergenic |
| ATTCCTGTTCTTATCCATAA+GGG | 0.460063 | 8.3:-52558771 | MS.gene36109:CDS |
| GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 8.3:-52558124 | MS.gene36109:CDS |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | 8.3:-52558173 | MS.gene36109:CDS |
| TATAAAACCAACTATAGAAA+GGG | 0.488530 | 8.3:+52558020 | None:intergenic |
| AATATACTCAACAATGATGA+TGG | 0.489877 | 8.3:+52558731 | None:intergenic |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8.3:-52558097 | MS.gene36109:CDS |
| GTATAAAACCAACTATAGAA+AGG | 0.503827 | 8.3:+52558019 | None:intergenic |
| AATATTAACTCCTCTGCCAT+TGG | 0.514154 | 8.3:+52558933 | None:intergenic |
| AAAATGCAGGTTGGTGATGT+TGG | 0.514979 | 8.3:-52558187 | MS.gene36109:intron |
| AGGGATTAAGTATGAGTACA+AGG | 0.524364 | 8.3:-52558853 | MS.gene36109:CDS |
| AGCTTTCTCATAAGGATCTG+AGG | 0.541397 | 8.3:+52558674 | None:intergenic |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8.3:-52558715 | MS.gene36109:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | 8.3:-52558169 | MS.gene36109:CDS |
| TTGTTGTTGACTATAGGAAG+AGG | 0.553068 | 8.3:-52557871 | MS.gene36109:CDS |
| AGTGTGATAAACTGATTGCT+TGG | 0.559583 | 8.3:-52557961 | MS.gene36109:CDS |
| GTATGTTTGGCATGAGAGCA+AGG | 0.570950 | 8.3:-52558893 | MS.gene36109:CDS |
| GTGTGATAAACTGATTGCTT+GGG | 0.572223 | 8.3:-52557960 | MS.gene36109:CDS |
| CATGAGAGCAAGGATAGCAT+TGG | 0.573949 | 8.3:-52558883 | MS.gene36109:CDS |
| TAGTGTTTCCAAATCTGTTG+CGG | 0.582755 | 8.3:-52557915 | MS.gene36109:CDS |
| GCTTTCTCATAAGGATCTGA+GGG | 0.584199 | 8.3:+52558675 | None:intergenic |
| CATTGTTGAGTATATTGATG+AGG | 0.596226 | 8.3:-52558724 | MS.gene36109:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | 8.3:-52558184 | MS.gene36109:intron |
| TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 8.3:+52558071 | None:intergenic |
| GAAATTATGCAACTTCAAAG+TGG | 0.628741 | 8.3:-52557990 | MS.gene36109:CDS |
| ATTATGCAACTTCAAAGTGG+AGG | 0.642784 | 8.3:-52557987 | MS.gene36109:CDS |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | 8.3:-52558180 | MS.gene36109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATATGGTAAAAACTT+TGG | + | chr8.3:52558191-52558210 | None:intergenic | 15.0% |
| !! | TAATGAATTAAATAACATGA+TGG | - | chr8.3:52558326-52558345 | MS.gene36109:intron | 15.0% |
| !! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8.3:52558355-52558374 | None:intergenic | 20.0% |
| !! | TATAAAACCAACTATAGAAA+GGG | + | chr8.3:52558769-52558788 | None:intergenic | 20.0% |
| !! | TATCCATATTATTAAAGACT+AGG | - | chr8.3:52558521-52558540 | MS.gene36109:intron | 20.0% |
| !!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8.3:52558364-52558383 | MS.gene36109:intron | 20.0% |
| ! | AATATACTCAACAATGATGA+TGG | + | chr8.3:52558058-52558077 | None:intergenic | 25.0% |
| ! | AGTTAATATTGTTGGATGAA+TGG | - | chr8.3:52557866-52557885 | MS.gene36109:CDS | 25.0% |
| ! | CTTCATATTTCATCAATGAA+TGG | - | chr8.3:52558477-52558496 | MS.gene36109:intron | 25.0% |
| ! | GGATTTATCATTCATCTTAT+TGG | - | chr8.3:52558498-52558517 | MS.gene36109:intron | 25.0% |
| ! | GTATAAAACCAACTATAGAA+AGG | + | chr8.3:52558770-52558789 | None:intergenic | 25.0% |
| ! | TTTCTCTAATATTCAATGGA+TGG | - | chr8.3:52558368-52558387 | MS.gene36109:intron | 25.0% |
| !! | ATTTTTACTTATTTCCTGCT+AGG | + | chr8.3:52558214-52558233 | None:intergenic | 25.0% |
| !! | CAACCTAGTCTTTAATAATA+TGG | + | chr8.3:52558527-52558546 | None:intergenic | 25.0% |
| !!! | ATGATTTTGTTGTTGACTAT+AGG | - | chr8.3:52558909-52558928 | MS.gene36109:CDS | 25.0% |
| !!! | GTATTGTTTTTGCTTTTGAA+TGG | - | chr8.3:52558291-52558310 | MS.gene36109:intron | 25.0% |
| AAAGAGAGATGAGATTGAAT+TGG | - | chr8.3:52558640-52558659 | MS.gene36109:CDS | 30.0% | |
| ATTCCTGTTCTTATCCATAA+GGG | - | chr8.3:52558015-52558034 | MS.gene36109:CDS | 30.0% | |
| CATTGTTGAGTATATTGATG+AGG | - | chr8.3:52558062-52558081 | MS.gene36109:CDS | 30.0% | |
| GAAATTATGCAACTTCAAAG+TGG | - | chr8.3:52558796-52558815 | MS.gene36109:CDS | 30.0% | |
| TACTATACTCATATCTCACT+AGG | + | chr8.3:52558451-52558470 | None:intergenic | 30.0% | |
| TTAATGTGTTGCAAAAATGC+AGG | - | chr8.3:52558586-52558605 | MS.gene36109:intron | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | - | chr8.3:52558067-52558086 | MS.gene36109:CDS | 30.0% | |
| TTTCCTGCTAGGTAAAAATA+TGG | + | chr8.3:52558203-52558222 | None:intergenic | 30.0% | |
| !! | ATGATGATGGATTCACAAAT+TGG | + | chr8.3:52558045-52558064 | None:intergenic | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | chr8.3:52557981-52558000 | None:intergenic | 30.0% |
| !! | TTACCATATTTTTACCTAGC+AGG | - | chr8.3:52558197-52558216 | MS.gene36109:intron | 30.0% |
| !!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | chr8.3:52558163-52558182 | MS.gene36109:CDS | 30.0% |
| AAGGAATTAGAGAATGTGCT+TGG | - | chr8.3:52558689-52558708 | MS.gene36109:CDS | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | + | chr8.3:52558722-52558741 | None:intergenic | 35.0% | |
| ACAGGAATCTTCTTGTGAAT+TGG | + | chr8.3:52558003-52558022 | None:intergenic | 35.0% | |
| AGGGATTAAGTATGAGTACA+AGG | - | chr8.3:52557933-52557952 | MS.gene36109:CDS | 35.0% | |
| AGTGTGATAAACTGATTGCT+TGG | - | chr8.3:52558825-52558844 | MS.gene36109:CDS | 35.0% | |
| ATACTCATATCTCACTAGGA+AGG | + | chr8.3:52558447-52558466 | None:intergenic | 35.0% | |
| ATTATGCAACTTCAAAGTGG+AGG | - | chr8.3:52558799-52558818 | MS.gene36109:CDS | 35.0% | |
| CTATAGGAAGAGGTTTGATT+TGG | - | chr8.3:52558925-52558944 | MS.gene36109:CDS | 35.0% | |
| CTTTGATCCCTTTCTATAGT+TGG | - | chr8.3:52558759-52558778 | MS.gene36109:CDS | 35.0% | |
| GATGAATGGCTTAGTATGTT+TGG | - | chr8.3:52557880-52557899 | MS.gene36109:CDS | 35.0% | |
| GATTCCTGTTCTTATCCATA+AGG | - | chr8.3:52558014-52558033 | MS.gene36109:CDS | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | - | chr8.3:52558071-52558090 | MS.gene36109:CDS | 35.0% | |
| GTGTGATAAACTGATTGCTT+GGG | - | chr8.3:52558826-52558845 | MS.gene36109:CDS | 35.0% | |
| TAGTGTTTCCAAATCTGTTG+CGG | - | chr8.3:52558871-52558890 | MS.gene36109:CDS | 35.0% | |
| TGAGATTGAATTGGCAAAGA+AGG | - | chr8.3:52558649-52558668 | MS.gene36109:CDS | 35.0% | |
| TTTCCCTTATGGATAAGAAC+AGG | + | chr8.3:52558021-52558040 | None:intergenic | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | - | chr8.3:52558127-52558146 | MS.gene36109:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | - | chr8.3:52558128-52558147 | MS.gene36109:CDS | 35.0% |
| ! | TTGTTGTTGACTATAGGAAG+AGG | - | chr8.3:52558915-52558934 | MS.gene36109:CDS | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8.3:52558723-52558742 | MS.gene36109:CDS | 35.0% |
| !!! | CACAAATTGGTTTTCCCTTA+TGG | + | chr8.3:52558032-52558051 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGTGACACATT+TGG | - | chr8.3:52558722-52558741 | MS.gene36109:CDS | 35.0% |
| AGCTTTCTCATAAGGATCTG+AGG | + | chr8.3:52558115-52558134 | None:intergenic | 40.0% | |
| CATATCTCACTAGGAAGGAA+AGG | + | chr8.3:52558442-52558461 | None:intergenic | 40.0% | |
| CTTGCTTGAGCTTTCTCATA+AGG | + | chr8.3:52558123-52558142 | None:intergenic | 40.0% | |
| GCTTTCTCATAAGGATCTGA+GGG | + | chr8.3:52558114-52558133 | None:intergenic | 40.0% | |
| GGCAGAGGAGTTAATATTGT+TGG | - | chr8.3:52557858-52557877 | MS.gene36109:CDS | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | - | chr8.3:52558077-52558096 | MS.gene36109:CDS | 40.0% | |
| TGATGTTGGAGGAAGGATAT+GGG | - | chr8.3:52558613-52558632 | MS.gene36109:intron | 40.0% | |
| TGTCACCACCAAAATAAGGT+TGG | + | chr8.3:52558718-52558737 | None:intergenic | 40.0% | |
| TGTGTTGCAAAAATGCAGGT+TGG | - | chr8.3:52558590-52558609 | MS.gene36109:intron | 40.0% | |
| TTTCTCATCCGCAACAGATT+TGG | + | chr8.3:52558882-52558901 | None:intergenic | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | - | chr8.3:52558662-52558681 | MS.gene36109:CDS | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | - | chr8.3:52558670-52558689 | MS.gene36109:CDS | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | chr8.3:52558599-52558618 | MS.gene36109:intron | 40.0% |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8.3:52557913-52557932 | MS.gene36109:CDS | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | - | chr8.3:52558707-52558726 | MS.gene36109:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8.3:52557914-52557933 | MS.gene36109:CDS | 40.0% |
| !! | GGCTGATTTTGTCAACAAGA+AGG | - | chr8.3:52558149-52558168 | MS.gene36109:CDS | 40.0% |
| CATGAGAGCAAGGATAGCAT+TGG | - | chr8.3:52557903-52557922 | MS.gene36109:CDS | 45.0% | |
| GTATGTTTGGCATGAGAGCA+AGG | - | chr8.3:52557893-52557912 | MS.gene36109:CDS | 45.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | - | chr8.3:52558612-52558631 | MS.gene36109:intron | 45.0% | |
| !!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8.3:52558710-52558729 | MS.gene36109:CDS | 45.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | - | chr8.3:52558606-52558625 | MS.gene36109:intron | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | chr8.3:52558602-52558621 | MS.gene36109:intron | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | - | chr8.3:52558617-52558636 | MS.gene36109:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52557856 | 52558952 | 52557856 | ID=MS.gene36109 |
| chr8.3 | mRNA | 52557856 | 52558952 | 52557856 | ID=MS.gene36109.t1;Parent=MS.gene36109 |
| chr8.3 | exon | 52558638 | 52558952 | 52558638 | ID=MS.gene36109.t1.exon1;Parent=MS.gene36109.t1 |
| chr8.3 | CDS | 52558638 | 52558952 | 52558638 | ID=cds.MS.gene36109.t1;Parent=MS.gene36109.t1 |
| chr8.3 | exon | 52557856 | 52558200 | 52557856 | ID=MS.gene36109.t1.exon2;Parent=MS.gene36109.t1 |
| chr8.3 | CDS | 52557856 | 52558200 | 52557856 | ID=cds.MS.gene36109.t1;Parent=MS.gene36109.t1 |
| Gene Sequence |
| Protein sequence |
