AlfalfaGEDB | MS.gene36335

M. sativa cultivar XinJiangDaYe / MS.gene36335

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36335.t1	XP_003597713.1	97.6	462	6	2	2	460	6	465	1.20E-262	915.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36335.t1	G7IUP0	97.6	462	6	2	2	460	6	465	8.6e-263	915.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene36335	0.835055	2.10E-56	-1.69E-46
MS.gene050838	MS.gene36335	0.811351	7.31E-51	-1.69E-46
MS.gene051234	MS.gene36335	0.82271	2.05E-53	-1.69E-46
MS.gene051642	MS.gene36335	0.804246	2.37E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36335.t1	MTR_2g101480	97.619	462	6	2	2	460	6	465	0.0	938

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36335.t1	AT3G16200	75.885	452	91	7	15	459	13	453	0.0	694

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Find 116 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAAGAACCCGACTA+AGG	0.505050	2.2:+2119534	None:intergenic
AAACTATCTATCACATTCAC+CGG	0.547164	2.2:-2121594	MS.gene36335:CDS
AAATGTTGTGCGTAAGATAT+TGG	0.372552	2.2:+2117104	None:intergenic
AACATGGTAAAACTGTAGAA+TGG	0.516964	2.2:-2119919	MS.gene36335:CDS
AAGAAAGGTTGAAGCTCTGT+TGG	0.544106	2.2:+2121419	None:intergenic
AAGCATGGTGGGGAGTTAGA+GGG	0.651325	2.2:-2117160	MS.gene36335:CDS
AAGCTAGGATCAGGTCAAGA+AGG	0.552627	2.2:-2117235	MS.gene36335:CDS
AAGCTCTGAAAGCTGGGTTC+CGG	0.567889	2.2:-2119369	MS.gene36335:CDS
AAGGGACCTGCATATGTTGA+TGG	0.450797	2.2:-2119644	MS.gene36335:CDS
AATCTATTCTTGATGTGTAC+TGG	0.378297	2.2:-2117061	MS.gene36335:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAATTTGTACGGGAT+GGG	-	chr2.2:2118648-2118667	MS.gene36335:intron	30.0%
AAAATATAAGAACCCGACTA+AGG	+	chr2.2:2118950-2118969	None:intergenic	30.0%
AAACTATCTATCACATTCAC+CGG	-	chr2.2:2116887-2116906	MS.gene36335:CDS	30.0%
AAAGAGTTGGGAAAATGTTA+GGG	-	chr2.2:2119969-2119988	MS.gene36335:intron	30.0%
AAATGTTGTGCGTAAGATAT+TGG	+	chr2.2:2121380-2121399	None:intergenic	30.0%
AACATGGTAAAACTGTAGAA+TGG	-	chr2.2:2118562-2118581	MS.gene36335:intron	30.0%
AAGATGGTGACATGTATATA+TGG	+	chr2.2:2120395-2120414	None:intergenic	30.0%
AAGGTAAACAGTAAAGAAGA+TGG	+	chr2.2:2120411-2120430	None:intergenic	30.0%
AATCTATTCTTGATGTGTAC+TGG	-	chr2.2:2121420-2121439	MS.gene36335:CDS	30.0%
ACTATTCAAAGAGGGAAATT+TGG	-	chr2.2:2118043-2118062	MS.gene36335:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	2116875	2121628	2116875	ID=MS.gene36335
chr2.2	mRNA	2116875	2121628	2116875	ID=MS.gene36335.t1;Parent=MS.gene36335
chr2.2	exon	2121223	2121628	2121223	ID=MS.gene36335.t1.exon1;Parent=MS.gene36335.t1
chr2.2	CDS	2121223	2121628	2121223	ID=cds.MS.gene36335.t1;Parent=MS.gene36335.t1
chr2.2	exon	2119506	2119950	2119506	ID=MS.gene36335.t1.exon2;Parent=MS.gene36335.t1
chr2.2	CDS	2119506	2119950	2119506	ID=cds.MS.gene36335.t1;Parent=MS.gene36335.t1
chr2.2	exon	2119284	2119399	2119284	ID=MS.gene36335.t1.exon3;Parent=MS.gene36335.t1
chr2.2	CDS	2119284	2119399	2119284	ID=cds.MS.gene36335.t1;Parent=MS.gene36335.t1
chr2.2	exon	2116875	2117290	2116875	ID=MS.gene36335.t1.exon4;Parent=MS.gene36335.t1
chr2.2	CDS	2116875	2117290	2116875	ID=cds.MS.gene36335.t1;Parent=MS.gene36335.t1

Gene Sequence

>MS.gene36335

ATGTCATCACCAAAACTATCTATCACATTCACCGGAACACGGCATACACACTCTCCCAAGCAAACCACCACCACCGCCATGTTAGAGCGGACCCTCTCCTCCCGCCGCGGCAACTCACACGGCGACTCCGACCTAATCAACGCCGACGATTCCAAAACCAAAAAACAACACATTCTCTTTCGCATCACCAACAGAGCTTCAACCTTTCTTTCTCAAACTCGCCATTACGTTCCGTGTCTCACCGTCGCATTTCTTCTTCTCTTCGCTTTCTCTTTCTTTTTCTTCTTCACATCTCGTAGCTTCGTTTGCATCTCCTCTAACGCTTTCTTCAAACCTGCTTCACGCGCCGCGTTTTTTGGTTTGGATGGACTTGATTCGGATTTTGGTGCTCTTGGTGTGCCCTGCTGTAAGTCTCTTTGCGCTGATCTGATCCGATTCATGTTAAATTCGCATTTTTTAGAATCGTGATTTTTAGGTTTTGTTTGGATCCAGAGAGAAAAAATGCAAAAATTTTAGCTTAGGAGTTGGTAATTTCGTGTATGGAAGATCAAAATATAAATGCTTCTAGATTAGAATGTTAAATAAACAAAAAATATTTTTTTTTTCCTTTAAATACTCAATTTAGTGTTATTGATTTTCAGGATGTTGATCCCGAATGGAATCAAATTTTATTTCTTTGTGTAATTGATTGATTTTGAATTCTGGGTTTGGCTTTATTTTCATTTTGATGCTGATGAATAGCATTAGGAATGTGTAAGTTAAGTTAAATATTAAATAAGTTAGATTTAGTAACACAAACAAAATTGGTCCAATCCATAAGTCCTAGCTCAATTGGCAAATGTCGAAATTGTTAGGCCGGATATCCGTGGGGTCCTAGATTCAAACCTGGGACCTCCCATTTGTGTGTTTCTTGTGGAATTTACCACTCCGTCTACAGACCCAAATAAAAAAACAATGAATTAGTTGAAGTCGTAAGGGATTTGGGCCCCTTAAGCAAGTGGCATGGGTCCGTTCCCTGACTCTTGCGTATGGAAAAAATTCAGTTGAGAGGGGAGAACCCGCCTTGTGTCCCCCACAAGTTCCCCGATTGAGATTACTCACTACTGATCAGCAACAGAAACTTCATACCTGTAACAAGGTAACCCCCAAAAACAAGTTACATTTAGCAACTATTCAAAGAGGGAAATTTGGGTGTATTATTGTCAGATGACAGAAATTTATCAAGTGGTTTGTTGCCAAACTAGTATTTATTTAACTTTTGGGTATATTTATTGTTAGCTCACACTTTTAGTCGAGAGTATAATGTTGATTTTGGTGGCATTTTATATTTCTTATCAATCACATTCCTTTAAAATGGCGGAGTTTGAAGTTGTACTTGCTTCACTGTGGAGGTATATTTATTGTTAGTTCACACTTTTTAGTCGACAGTATAGTGTTGATTTTGGTGGCATTTTATATTTCGTATCAATCACATTCCTTTAAAATGGCGGAGTTTGAAGTTGTACTTGCTTGACTGTGGAGAATTTGTGCGAATGATTTGATAGTGTGTGGTTTTGGATTTATAATTTCATTTCCTGTTGTTTCAAACTATTGGTTTCTGATTTTGAATTCATTTCCTGTTGTTTCAAGTGATACTGTTTGTTGTTGTTGAATACTTATAAGTTTATTCTTGGTAAAGGCAGATCGAAACATGGTAAAACTGTAGAATGGACATCGAAAGATCTGCTTAAGGGGCTGGAAGAGTTTGTTCCTATTTACGAAACACGGCCAATCAAAAACAATTTGTACGGGATGGGTTTGGACCACAGCTTTGGACTTTGGTTCATTGCTCGGTGGCTTAAACCGGATCTGATGATCGAGAGTGGCGCTTTCAAAGGACATTCAACTTGGGTTTTGCGGCAAGCTATGCCAGACACACGGATTGTTTCTCTTTCACCTAGGCATCCAGAAAAGTATCTAAAAAAGGGACCTGCATATGTTGATGGTAACTGTACATATTATGCTGGAAAGGACTTTGTGGATTTTGGAAGTGTTGATTGGTCAAAAGTGATGAAGGAACATGGGATTAAGGACCTTAGTCGGGTTCTTATATTTTTTGACGACCATCAAAATGAATTGAAAAGGTGAATTACGATCTTCCAGATGCATGATTCAATAGTTGAGTACTTATGAATGAAATTGCTGCTGCTTATTATATAATTGTTATTTTGTATGTGTCATAATGAGCAGAATCGAACAAGCTCTGAAAGCTGGGTTCCGGCATCTTGTTTTTGAGGATAACTATGACACTGGTACTGGTGACCACTATTCATTGAGGCAGATATGTGATCAATTTTACATACGAGGTGTGTAAACTCTCACTTTGCTATTTAATTATCCTACTTTATTGAATTTTCTTTCTGTTTCCGTGAGAAATGCATACAAATAATATGCATAAATATAATTGACAAAAAATGAATGAAAATCCAACATATGAAGCCAGAAAATTGATGAAAAACACTACTACTAGATTGCAGGGAAACAAGCACAAGTCTATATAGTAAATTGAAAGGTTCAAACCCAAGAAATGACTGCAAAAGTAAATTTTGGTTAATAGGAAACCACCATTTATTAGAGTCTTGCAATTTATATGATTGGCAAAACTTTTGAGGCTGACACGGCTACGTTTAGGCATAGTACTCAATCCCAAATAGCGGCGCGCAGCGTCCGACCCCAAAAGTGGGATAGCGGGAGGAAGACAGCTATTGAATAATACTATAAAGTATAAACAAACACATTTAATATAAAATTAAAGATAACACTCAAATCTCATGAAATATTCATAAATCAAAGCACTCAAACATCCCCAAAACATTACATTCAAATCCAAATACCAAAAAATGTCAAGAAATAAATAAGCTTATGAAACATTAAATTTGAAAGAAAAAAGAACAGAGGAGCTACAATGAGAGCAAAGAACCAGCGGAAGATAGATGGAACATAAACAGTGGAAGACGATGGCAGCGGCACAATTGGCGGCTGCGACGGTTATGGCAATTGGTTTGCAAATCAGTTTGCAGATCGTGTTTTCTGTGTTTTGCGGCAGAGAAGAGAGAAAGAGTTGGGAAAATGTTAGGGTTTATACGAAACCCCCAAAATACCCTTAAAATGGTTATAAAATTAGGGTCAACTTGGGATTTTCCTGTTAAAATCCATAGCGGATTAGAATCCGCTACCGCTCTGCTACCGTTACTCACTATAGCAGCTATAATAGCGGCCGCTATCTTGAACGGTACCGCTACGACACCCACCGTAGTGACCACTATGGTTTAGGTGTGTCTGCATGTTTGACACCGACACGTGTTAGACACCTCAGACGCTCAAAATGAACTTTTTCCTTCGCTTTGACGCTACAATGAGAATAAACACAACTAAGTTTTTTTTTTTCTTTCTTTCTCTAAATAGATTAAAGCTTGAAGAAGTATTATATTAGTATTTTAACTAGGCATTTCAAAATTTCCTGCATATGCATGTCCTCCCATATATACATGTCACCATCTTCTTTACTGTTTACCTTTCTTTCCCAGTTTTCCTTTTCTGGTCTCCTATTTCGTCATGGTCTTCATCTTCATCATATATTGGCGATCCTTTACTCTCAATATAGATCTTCTGTTAGTGTCCTAGCGGTGTCTACATATATTGTCCGTGTTTGCATTCGTGCTTCATAGGACCAAAGAAGGTAAGAGGAAAGAAATAAAGTAGACAATGAACTAGTTTTTTAGTTGTTTGGTTGAAAAGTAAATGAAGGGAAAGAAATGTAATCTTCTTTCTCCTTTTTTGTGATTGGGTAGAAACCGGGAAAAGAAAAAGCATATTTATGATATGACATAAATACCCAAGTAAAGATAAAGAGTATAAATATAAAATATAATATCACATGTAAAAACTGAATAAATATTCAGTCTAAACTCAAAACTCAATTTATTGGAATAAAGTGCATAAGAAAAGTAAGGTCACAAAGACTAGTAAACAGTTGCTGGCTGGTGACTAAATCTGTCTTTGCTGCCGTTCCTGGGGGTTGGAACTTTCAAGTTGCTATTAGCTTGTGTTTTTTCCACTACAAAATAGTAATAATGCATTTCATTAATACTAGAAAGAATTCTTAATTGTCGTTTTGGTCACAAAAATATAGGCAATGTTGGCATGAAGTCCAGCATCCATTTGTTGGAAAATGTTTGTATGGGTTCCATACCTGTTGATAATCTTTATATTGGTGGAGTTACTTCAAATTTTAAAATATTTTTCTAATAGCTTTGGAATAGGAATTTGACTTCTGTTTTGTTCTTTTGTTGATCTAAGGTGGGGGACACAGTTGCTTTAAAGACAGTGATGAAGCTAGGATCAGGTCAAGAAGGAAGAAATTCTGGGAGAAAGCAGTTGATATCGAAGAACTGTGTGGACCGGGGGAAGCATGGTGGGGAGTTAGAGGGTACATGCGCGACAACTTTAATCATAGTAATAAGCCAATATCTTACGCACAACATTTCCAGAATAGCCGGTATGTTGAATCTATTCTTGATGTGTACTGGGAACTCCCACCAGTTGCTGGGCCTTCCCTCACTCATCAAACCAGATATGATCCTGCTCGTGCTCCCAATCCTATTGTTGAAGATGGGCGATATGGTTTGTTCCAACGGCTTGGCTTGGGTAAACTTGACAATTCTGTATTTAATGGATACACTCAGATGGTTTATTTACAGATATCTGAACAATAA

Protein sequence

>MS.gene36335.t1

MSSPKLSITFTGTRHTHSPKQTTTTAMLERTLSSRRGNSHGDSDLINADDSKTKKQHILFRITNRASTFLSQTRHYVPCLTVAFLLLFAFSFFFFFTSRSFVCISSNAFFKPASRAAFFGLDGLDSDFGALGVPCCRSKHGKTVEWTSKDLLKGLEEFVPIYETRPIKNNLYGMGLDHSFGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPDTRIVSLSPRHPEKYLKKGPAYVDGNCTYYAGKDFVDFGSVDWSKVMKEHGIKDLSRVLIFFDDHQNELKRIEQALKAGFRHLVFEDNYDTGTGDHYSLRQICDQFYIRGGGHSCFKDSDEARIRSRRKKFWEKAVDIEELCGPGEAWWGVRGYMRDNFNHSNKPISYAQHFQNSRYVESILDVYWELPPVAGPSLTHQTRYDPARAPNPIVEDGRYGLFQRLGLGKLDNSVFNGYTQMVYLQISEQ