Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36454.t1 | XP_013457316.1 | 92.2 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 2.90E-242 | 847.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36454.t1 | A0A072UNX5 | 92.2 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 2.1e-242 | 847.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054893 | MS.gene36454 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene36454 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene36454 | 0.803485 | 3.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36454.t1 | MTR_4g094548 | 92.220 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 0.0 | 840 |
| MS.gene36454.t1 | MTR_4g094555 | 88.276 | 435 | 51 | 0 | 1 | 435 | 1 | 435 | 0.0 | 803 |
| MS.gene36454.t1 | MTR_4g094570 | 82.751 | 429 | 74 | 0 | 1 | 429 | 1 | 429 | 0.0 | 756 |
| MS.gene36454.t1 | MTR_4g094550 | 82.517 | 429 | 74 | 1 | 1 | 428 | 1 | 429 | 0.0 | 751 |
| MS.gene36454.t1 | MTR_6g048350 | 81.439 | 431 | 80 | 0 | 1 | 431 | 1 | 431 | 0.0 | 749 |
| MS.gene36454.t1 | MTR_4g094562 | 81.967 | 427 | 69 | 1 | 1 | 427 | 1 | 419 | 0.0 | 731 |
| MS.gene36454.t1 | MTR_4g094560 | 81.379 | 435 | 71 | 1 | 1 | 435 | 1 | 425 | 0.0 | 729 |
| MS.gene36454.t1 | MTR_6g048310 | 81.647 | 425 | 73 | 2 | 3 | 427 | 2 | 421 | 0.0 | 714 |
| MS.gene36454.t1 | MTR_4g094565 | 67.366 | 429 | 59 | 2 | 1 | 429 | 1 | 348 | 0.0 | 563 |
| MS.gene36454.t1 | MTR_2g030470 | 61.136 | 440 | 156 | 5 | 3 | 435 | 6 | 437 | 0.0 | 553 |
| MS.gene36454.t1 | MTR_2g030470 | 61.916 | 407 | 146 | 3 | 7 | 412 | 424 | 822 | 0.0 | 535 |
| MS.gene36454.t1 | MTR_1g052640 | 60.143 | 419 | 155 | 3 | 1 | 415 | 1 | 411 | 0.0 | 540 |
| MS.gene36454.t1 | MTR_2g030460 | 59.286 | 420 | 159 | 4 | 1 | 416 | 1 | 412 | 0.0 | 540 |
| MS.gene36454.t1 | MTR_0083s0100 | 62.113 | 388 | 138 | 2 | 29 | 415 | 32 | 411 | 0.0 | 529 |
| MS.gene36454.t1 | MTR_4g094562 | 82.867 | 286 | 49 | 0 | 1 | 286 | 1 | 286 | 3.69e-179 | 503 |
| MS.gene36454.t1 | MTR_2g030480 | 59.569 | 418 | 138 | 4 | 1 | 415 | 1 | 390 | 4.91e-179 | 505 |
| MS.gene36454.t1 | MTR_4g094565 | 75.874 | 286 | 41 | 1 | 1 | 286 | 1 | 258 | 2.60e-152 | 434 |
| MS.gene36454.t1 | MTR_2g030460 | 57.602 | 342 | 133 | 4 | 1 | 338 | 1 | 334 | 6.20e-150 | 429 |
| MS.gene36454.t1 | MTR_1g052640 | 57.895 | 342 | 132 | 3 | 1 | 338 | 1 | 334 | 1.66e-146 | 421 |
| MS.gene36454.t1 | MTR_8g039300 | 42.482 | 419 | 221 | 6 | 1 | 412 | 1 | 406 | 1.41e-126 | 372 |
| MS.gene36454.t1 | MTR_6g090090 | 42.857 | 420 | 210 | 7 | 1 | 413 | 27 | 423 | 1.76e-124 | 368 |
| MS.gene36454.t1 | MTR_6g089930 | 41.412 | 425 | 221 | 8 | 1 | 414 | 1 | 408 | 7.87e-123 | 363 |
| MS.gene36454.t1 | MTR_3g035040 | 41.805 | 421 | 225 | 6 | 1 | 414 | 1 | 408 | 8.22e-122 | 360 |
| MS.gene36454.t1 | MTR_1g052640 | 57.931 | 290 | 110 | 3 | 1 | 286 | 1 | 282 | 9.19e-122 | 356 |
| MS.gene36454.t1 | MTR_1g035220 | 40.863 | 394 | 187 | 9 | 1 | 384 | 1 | 358 | 1.68e-105 | 317 |
| MS.gene36454.t1 | MTR_1g062750 | 41.841 | 239 | 124 | 4 | 58 | 287 | 2 | 234 | 2.63e-68 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36454.t1 | AT5G61820 | 55.402 | 435 | 165 | 7 | 14 | 426 | 14 | 441 | 8.83e-167 | 477 |
| MS.gene36454.t1 | AT5G61820 | 55.402 | 435 | 165 | 7 | 14 | 426 | 14 | 441 | 8.83e-167 | 477 |
Find 89 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTCCTAGCTCGAATTT+AGG | 0.186947 | 4.1:-18736717 | None:intergenic |
| ACCTAAGATACACTGTAAAA+TGG | 0.215785 | 4.1:+18737315 | MS.gene36454:CDS |
| AACCCTTCTGGAATCTCTTC+AGG | 0.298573 | 4.1:-18737077 | None:intergenic |
| CATTTGTCCTCAAACCCTTC+TGG | 0.306749 | 4.1:-18737089 | None:intergenic |
| TGTCGCTGTTCCTCGTGTTT+CGG | 0.325216 | 4.1:-18737018 | None:intergenic |
| GGAATTGGATCAACTCTATA+TGG | 0.325668 | 4.1:+18737888 | MS.gene36454:CDS |
| CATCAGCATTCAGGTGGAAT+TGG | 0.339156 | 4.1:+18737873 | MS.gene36454:CDS |
| GCTGTTGCTCATCAGCATTC+AGG | 0.347232 | 4.1:+18737864 | MS.gene36454:CDS |
| TAAGTTTCATGGAGAGGTAT+AGG | 0.349623 | 4.1:-18736837 | None:intergenic |
| ATGAAACTTATCTTCATCAT+TGG | 0.351373 | 4.1:+18736850 | MS.gene36454:CDS |
| AATGATGAAGATAAGTTTCA+TGG | 0.363015 | 4.1:-18736848 | None:intergenic |
| ACAGATATTCCGGATCCTTT+CGG | 0.377714 | 4.1:+18737038 | MS.gene36454:CDS |
| CTTAGGTAGAGACTTCTCTT+TGG | 0.385709 | 4.1:-18737299 | None:intergenic |
| CAGGTCCTAGCTCGAATTTA+GGG | 0.385995 | 4.1:-18736716 | None:intergenic |
| AATGTTACAGTCGATGAATA+TGG | 0.391140 | 4.1:+18737191 | MS.gene36454:CDS |
| CAGAAGGGTTTGAGGACAAA+TGG | 0.393938 | 4.1:+18737090 | MS.gene36454:CDS |
| TCATTTCCATTTCCGTAACT+TGG | 0.400782 | 4.1:-18738932 | None:intergenic |
| TATCTTCATCATTGGGCTGT+TGG | 0.404983 | 4.1:+18736858 | MS.gene36454:CDS |
| TCTATACCAAGTTACGGAAA+TGG | 0.405805 | 4.1:+18738926 | MS.gene36454:CDS |
| AAGGAGCACACTGGAGTAAT+GGG | 0.409814 | 4.1:+18739070 | MS.gene36454:CDS |
| ATCTCTATGCCGAAAGGATC+CGG | 0.410784 | 4.1:-18737047 | None:intergenic |
| AGGAACAGCGACAGATATTC+CGG | 0.412247 | 4.1:+18737028 | MS.gene36454:CDS |
| ATGAATATGGAAGGTCTATT+AGG | 0.414925 | 4.1:+18737204 | MS.gene36454:CDS |
| AATCCACAGTACTTTGGCCT+TGG | 0.416748 | 4.1:+18736993 | MS.gene36454:CDS |
| CCTAAATTCGAGCTAGGACC+TGG | 0.421913 | 4.1:+18736717 | MS.gene36454:CDS |
| TGAAACTTATCTTCATCATT+GGG | 0.422361 | 4.1:+18736851 | MS.gene36454:CDS |
| CCTAAGATACACTGTAAAAT+GGG | 0.425849 | 4.1:+18737316 | MS.gene36454:CDS |
| CACTGTAAAATGGGTTGCTT+GGG | 0.432250 | 4.1:+18737325 | MS.gene36454:CDS |
| CATGTTCTTGTGAGGAATAA+TGG | 0.432275 | 4.1:+18736951 | MS.gene36454:CDS |
| CGCGGCGCAGAGGATAAGTT+AGG | 0.433194 | 4.1:+18737140 | MS.gene36454:CDS |
| AAACCATCAGATGATTCAAA+AGG | 0.440464 | 4.1:+18737401 | MS.gene36454:CDS |
| AGAGATTCCAGAAGGGTTTG+AGG | 0.448379 | 4.1:+18737082 | MS.gene36454:CDS |
| ACACTGTAAAATGGGTTGCT+TGG | 0.450463 | 4.1:+18737324 | MS.gene36454:CDS |
| TCTATTAGGTCAGATTATAA+AGG | 0.452313 | 4.1:+18737218 | MS.gene36454:CDS |
| GAATGTCTAAAGTGTTGGTA+TGG | 0.455334 | 4.1:-18739124 | None:intergenic |
| ACAAATCTCCCACTACAAAC+TGG | 0.456873 | 4.1:+18737825 | MS.gene36454:CDS |
| GATCCTTTCGGCATAGAGAT+AGG | 0.457809 | 4.1:+18737050 | MS.gene36454:CDS |
| CAAGGAGCACACTGGAGTAA+TGG | 0.460467 | 4.1:+18739069 | MS.gene36454:CDS |
| TTAAGTGCTATATGCCCTCT+TGG | 0.461718 | 4.1:-18736777 | None:intergenic |
| AATGAGACAGGCTACATTGT+AGG | 0.464236 | 4.1:+18738962 | MS.gene36454:CDS |
| AGAGATCATAATGAGAGAAA+TGG | 0.477517 | 4.1:+18737783 | MS.gene36454:CDS |
| GGAGTTGTTCTGCCACCAAT+AGG | 0.477987 | 4.1:-18739102 | None:intergenic |
| GGTTCTGTCAAGATAGTTGA+TGG | 0.483218 | 4.1:+18739010 | MS.gene36454:CDS |
| TACGGAAATGGAAATGAAGC+TGG | 0.483318 | 4.1:+18738938 | MS.gene36454:CDS |
| TGTTCTTCTATACCAAGTTA+CGG | 0.501586 | 4.1:+18738920 | MS.gene36454:CDS |
| AATGTCAATCCACAGTACTT+TGG | 0.509452 | 4.1:+18736987 | MS.gene36454:CDS |
| TATCTATTGATAACTGATCC+AGG | 0.514983 | 4.1:-18736735 | None:intergenic |
| TTGTCCCCTAAATTCGAGCT+AGG | 0.516788 | 4.1:+18736711 | MS.gene36454:CDS |
| TTATACACAGTGTAAATTGA+AGG | 0.518284 | 4.1:+18737262 | MS.gene36454:CDS |
| TTCCTCGTGTTTCGGATCCA+AGG | 0.522728 | 4.1:-18737010 | None:intergenic |
| TCAACTATCTTGACAGAACC+TGG | 0.529655 | 4.1:-18739007 | None:intergenic |
| ATCAACATGTGGTTTGTACA+TGG | 0.535755 | 4.1:+18736588 | None:intergenic |
| TGGATCAACTCTATATGGAC+AGG | 0.542632 | 4.1:+18737893 | MS.gene36454:CDS |
| GCGGCGCAGAGGATAAGTTA+GGG | 0.545390 | 4.1:+18737141 | MS.gene36454:CDS |
| AGCAGCAGCAAGGAGCACAC+TGG | 0.545541 | 4.1:+18739061 | MS.gene36454:CDS |
| AGGGTTTGAGGACAAATGGT+TGG | 0.555185 | 4.1:+18737094 | MS.gene36454:CDS |
| TTCACAAAAGAAGTTGAGCA+TGG | 0.556340 | 4.1:-18736657 | None:intergenic |
| AATGAAGCTGGAAATGAGAC+AGG | 0.556363 | 4.1:+18738950 | MS.gene36454:CDS |
| ATTAGGTCAGATTATAAAGG+AGG | 0.558914 | 4.1:+18737221 | MS.gene36454:CDS |
| TCCACTTGTTATCCTCGACC+AGG | 0.565783 | 4.1:+18738989 | MS.gene36454:CDS |
| GAGTGGAATGTCTAAAGTGT+TGG | 0.571391 | 4.1:-18739129 | None:intergenic |
| ACACAGTGTAAATTGAAGGA+AGG | 0.579319 | 4.1:+18737266 | MS.gene36454:CDS |
| TCGATTATATATATCTTCAC+AGG | 0.579991 | 4.1:-18737362 | None:intergenic |
| AATGTCTAAAGTGTTGGTAT+GGG | 0.605559 | 4.1:-18739123 | None:intergenic |
| CATAGCCACCAGTTTGTAGT+GGG | 0.607686 | 4.1:-18737833 | None:intergenic |
| ACATAGCCACCAGTTTGTAG+TGG | 0.611101 | 4.1:-18737834 | None:intergenic |
| GCTGAAGTAGTTGATGATGC+TGG | 0.614547 | 4.1:+18736810 | MS.gene36454:CDS |
| ACACAGAAAATGATAGCCAC+AGG | 0.616920 | 4.1:+18736910 | MS.gene36454:CDS |
| CAGAGCTTTGTAGCATCCTG+TGG | 0.622635 | 4.1:-18736926 | None:intergenic |
| ATCTTGACAGAACCTGGTCG+AGG | 0.624814 | 4.1:-18739001 | None:intergenic |
| TTACCTATCTCTATGCCGAA+AGG | 0.626845 | 4.1:-18737053 | None:intergenic |
| GAACTCGGATCATGATTGCA+AGG | 0.629809 | 4.1:+18737427 | MS.gene36454:CDS |
| TGAAGATAAGTTTCATGGAG+AGG | 0.630553 | 4.1:-18736843 | None:intergenic |
| GTCTAACTACAGCAGCAGCA+AGG | 0.633861 | 4.1:+18739051 | MS.gene36454:CDS |
| GTTGCTCATCAGCATTCAGG+TGG | 0.638404 | 4.1:+18737867 | MS.gene36454:CDS |
| AATCCTGAAGAGATTCCAGA+AGG | 0.639599 | 4.1:+18737074 | MS.gene36454:CDS |
| GCTCTGATCATGTTCTTGTG+AGG | 0.641080 | 4.1:+18736943 | MS.gene36454:CDS |
| ACCTGGTCGAGGATAACAAG+TGG | 0.642662 | 4.1:-18738990 | None:intergenic |
| TTACAGTCGATGAATATGGA+AGG | 0.647732 | 4.1:+18737195 | MS.gene36454:CDS |
| AAAAGAAGTTGAGCATGGTG+TGG | 0.657017 | 4.1:-18736652 | None:intergenic |
| TGATTCAAAAGGATTGAACT+CGG | 0.658284 | 4.1:+18737412 | MS.gene36454:CDS |
| GGCCTTGGATCCGAAACACG+AGG | 0.659961 | 4.1:+18737008 | MS.gene36454:CDS |
| ATCCTGAAGAGATTCCAGAA+GGG | 0.660203 | 4.1:+18737075 | MS.gene36454:CDS |
| AGGTCCTAGCTCGAATTTAG+GGG | 0.663017 | 4.1:-18736715 | None:intergenic |
| ATGGTTGTGTTAATGTGATG+AGG | 0.664654 | 4.1:+18737802 | MS.gene36454:CDS |
| GATCCAAGGCCAAAGTACTG+TGG | 0.668147 | 4.1:-18736996 | None:intergenic |
| TATTGATACGCGCGGCGCAG+AGG | 0.680676 | 4.1:+18737130 | MS.gene36454:CDS |
| AATCTCCCACTACAAACTGG+TGG | 0.686412 | 4.1:+18737828 | MS.gene36454:CDS |
| GTTCATGCTATTGATACGCG+CGG | 0.698908 | 4.1:+18737122 | MS.gene36454:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTCTCTTATATTC+TGG | - | chr4.1:18738209-18738228 | None:intergenic | 15.0% |
| !! | AAAATAGTCAGATATAAACT+TGG | + | chr4.1:18738224-18738243 | MS.gene36454:intron | 20.0% |
| !! | TACACCAAAATAACTTAAAA+GGG | + | chr4.1:18738368-18738387 | MS.gene36454:intron | 20.0% |
| !! | TACATTCATTGTTAAATACT+TGG | + | chr4.1:18737937-18737956 | MS.gene36454:intron | 20.0% |
| !! | TTAACTGTAAAATATAACAC+TGG | + | chr4.1:18737682-18737701 | MS.gene36454:intron | 20.0% |
| !!! | ATCTGTTTACTTTTGTATTA+GGG | + | chr4.1:18738795-18738814 | MS.gene36454:intron | 20.0% |
| !!! | CAAACGTTTTAATTTACTAA+TGG | + | chr4.1:18738577-18738596 | MS.gene36454:intron | 20.0% |
| !!! | TATCTGTTTACTTTTGTATT+AGG | + | chr4.1:18738794-18738813 | MS.gene36454:intron | 20.0% |
| ! | AACACAAGAACAATATAACA+TGG | + | chr4.1:18738035-18738054 | MS.gene36454:intron | 25.0% |
| ! | AATGATGAAGATAAGTTTCA+TGG | - | chr4.1:18736851-18736870 | None:intergenic | 25.0% |
| ! | ATAAGTTAAACATTGTGTAG+TGG | + | chr4.1:18738848-18738867 | MS.gene36454:intron | 25.0% |
| ! | ATATTGTTCTTGTGTTCTAA+GGG | - | chr4.1:18738031-18738050 | None:intergenic | 25.0% |
| ! | ATCAAACATTAGACTAAGTT+CGG | - | chr4.1:18737592-18737611 | None:intergenic | 25.0% |
| ! | ATGAAACTTATCTTCATCAT+TGG | + | chr4.1:18736850-18736869 | MS.gene36454:CDS | 25.0% |
| ! | CTACACCAAAATAACTTAAA+AGG | + | chr4.1:18738367-18738386 | MS.gene36454:intron | 25.0% |
| ! | CTTCATTCAGAAAGTAATAA+TGG | + | chr4.1:18738453-18738472 | MS.gene36454:intron | 25.0% |
| ! | TATATTGTTCTTGTGTTCTA+AGG | - | chr4.1:18738032-18738051 | None:intergenic | 25.0% |
| ! | TCGATTATATATATCTTCAC+AGG | - | chr4.1:18737365-18737384 | None:intergenic | 25.0% |
| ! | TCTATTAGGTCAGATTATAA+AGG | + | chr4.1:18737218-18737237 | MS.gene36454:CDS | 25.0% |
| ! | TGAAACTTATCTTCATCATT+GGG | + | chr4.1:18736851-18736870 | MS.gene36454:CDS | 25.0% |
| ! | TTACTAATGGTGTGAATTAT+TGG | + | chr4.1:18738590-18738609 | MS.gene36454:intron | 25.0% |
| ! | TTATACACAGTGTAAATTGA+AGG | + | chr4.1:18737262-18737281 | MS.gene36454:CDS | 25.0% |
| !! | ATTCAGAAAGTAATAATGGA+AGG | + | chr4.1:18738457-18738476 | MS.gene36454:intron | 25.0% |
| !! | TGTTTTTCCTAACAGTTAAA+AGG | - | chr4.1:18737987-18738006 | None:intergenic | 25.0% |
| !! | TTCAGAAAGTAATAATGGAA+GGG | + | chr4.1:18738458-18738477 | MS.gene36454:intron | 25.0% |
| !!! | ATGATATTGATTTTCCAAGA+GGG | + | chr4.1:18736763-18736782 | MS.gene36454:CDS | 25.0% |
| !!! | CTTTTAAGTTATTTTGGTGT+AGG | - | chr4.1:18738369-18738388 | None:intergenic | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.1:18736762-18736781 | MS.gene36454:CDS | 25.0% |
| !!! | TTGTCCCTTTTAAGTTATTT+TGG | - | chr4.1:18738375-18738394 | None:intergenic | 25.0% |
| AAAATCCAAGATACCAAACT+TGG | + | chr4.1:18737553-18737572 | MS.gene36454:intron | 30.0% | |
| AAACCATCAGATGATTCAAA+AGG | + | chr4.1:18737401-18737420 | MS.gene36454:CDS | 30.0% | |
| AATGTTACAGTCGATGAATA+TGG | + | chr4.1:18737191-18737210 | MS.gene36454:CDS | 30.0% | |
| ACCTAAGATACACTGTAAAA+TGG | + | chr4.1:18737315-18737334 | MS.gene36454:CDS | 30.0% | |
| ACTAAACTTTACAATTGACC+CGG | - | chr4.1:18738412-18738431 | None:intergenic | 30.0% | |
| AGACAAACAAACTACGAATA+TGG | - | chr4.1:18737658-18737677 | None:intergenic | 30.0% | |
| AGAGATCATAATGAGAGAAA+TGG | + | chr4.1:18737783-18737802 | MS.gene36454:CDS | 30.0% | |
| AGGTTGAAATTGAATCATCT+TGG | - | chr4.1:18738349-18738368 | None:intergenic | 30.0% | |
| ATCAAGATACTAGTAGTTTG+TGG | + | chr4.1:18737461-18737480 | MS.gene36454:intron | 30.0% | |
| ATCCACATATTTCAGAAAAC+AGG | - | chr4.1:18738874-18738893 | None:intergenic | 30.0% | |
| ATGAATATGGAAGGTCTATT+AGG | + | chr4.1:18737204-18737223 | MS.gene36454:CDS | 30.0% | |
| ATTAGGTCAGATTATAAAGG+AGG | + | chr4.1:18737221-18737240 | MS.gene36454:CDS | 30.0% | |
| CATAAAAAATGAAGAACGAG+TGG | - | chr4.1:18739149-18739168 | None:intergenic | 30.0% | |
| CCTAAGATACACTGTAAAAT+GGG | + | chr4.1:18737316-18737335 | MS.gene36454:CDS | 30.0% | |
| CTATGAGTTACAACAATGAT+TGG | - | chr4.1:18738105-18738124 | None:intergenic | 30.0% | |
| TCTGTTTGAATACTACAGTT+TGG | - | chr4.1:18738689-18738708 | None:intergenic | 30.0% | |
| TGATTCAAAAGGATTGAACT+CGG | + | chr4.1:18737412-18737431 | MS.gene36454:CDS | 30.0% | |
| TGTTCTTCTATACCAAGTTA+CGG | + | chr4.1:18738920-18738939 | MS.gene36454:CDS | 30.0% | |
| ! | AAACACTCGAGATTTTATCA+TGG | - | chr4.1:18738757-18738776 | None:intergenic | 30.0% |
| ! | AAGATGGATTTCTTTGTTTC+AGG | + | chr4.1:18737734-18737753 | MS.gene36454:intron | 30.0% |
| ! | AATATGTGGATCATGTTTTC+AGG | + | chr4.1:18738883-18738902 | MS.gene36454:intron | 30.0% |
| ! | AATCCTTTTGAATCATCTGA+TGG | - | chr4.1:18737407-18737426 | None:intergenic | 30.0% |
| ! | ATACTAGTAGTTTGTGGAAA+TGG | + | chr4.1:18737467-18737486 | MS.gene36454:intron | 30.0% |
| ! | ATGTCGTAGTTTTCAATTCA+GGG | + | chr4.1:18738551-18738570 | MS.gene36454:intron | 30.0% |
| ! | GAAATGGATTTCATGTAGTT+GGG | + | chr4.1:18737483-18737502 | MS.gene36454:intron | 30.0% |
| ! | TAAATTGAAGGAAGGTTTTG+AGG | + | chr4.1:18737274-18737293 | MS.gene36454:CDS | 30.0% |
| ! | TATCTATTGATAACTGATCC+AGG | - | chr4.1:18736738-18736757 | None:intergenic | 30.0% |
| !! | AAATTGAAGGAAGGTTTTGA+GGG | + | chr4.1:18737275-18737294 | MS.gene36454:CDS | 30.0% |
| !! | AATGTCTAAAGTGTTGGTAT+GGG | - | chr4.1:18739126-18739145 | None:intergenic | 30.0% |
| !! | ACTTAGACCTTTTAACTGTT+AGG | + | chr4.1:18737977-18737996 | MS.gene36454:intron | 30.0% |
| !! | TAAATACTTGGTGTTAGCTA+GGG | + | chr4.1:18737949-18737968 | MS.gene36454:intron | 30.0% |
| !! | TGTAAGTTAGATATTGGCTT+TGG | - | chr4.1:18738168-18738187 | None:intergenic | 30.0% |
| !! | TTAAATACTTGGTGTTAGCT+AGG | + | chr4.1:18737948-18737967 | MS.gene36454:intron | 30.0% |
| !!! | CACTCGTTCTTCATTTTTTA+TGG | + | chr4.1:18739147-18739166 | MS.gene36454:CDS | 30.0% |
| AACATGGAAAACTCCAAAAC+TGG | + | chr4.1:18738051-18738070 | MS.gene36454:intron | 35.0% | |
| AACTAGACAGTAGACACAAT+TGG | + | chr4.1:18738724-18738743 | MS.gene36454:intron | 35.0% | |
| AATGATTCTGCCCCTTAAAA+GGG | + | chr4.1:18738491-18738510 | MS.gene36454:intron | 35.0% | |
| AATGTCAATCCACAGTACTT+TGG | + | chr4.1:18736987-18737006 | MS.gene36454:CDS | 35.0% | |
| ACAAAATTCAAATCCCTTCC+GGG | + | chr4.1:18738391-18738410 | MS.gene36454:intron | 35.0% | |
| ACACAGTGTAAATTGAAGGA+AGG | + | chr4.1:18737266-18737285 | MS.gene36454:CDS | 35.0% | |
| AGATACCAAACTTGGAATCT+AGG | + | chr4.1:18737561-18737580 | MS.gene36454:intron | 35.0% | |
| AGATTCCAAGTTTGGTATCT+TGG | - | chr4.1:18737561-18737580 | None:intergenic | 35.0% | |
| ATGGTTGTGTTAATGTGATG+AGG | + | chr4.1:18737802-18737821 | MS.gene36454:CDS | 35.0% | |
| CATGTTCTTGTGAGGAATAA+TGG | + | chr4.1:18736951-18736970 | MS.gene36454:CDS | 35.0% | |
| CTGAATTGAAAACTACGACA+TGG | - | chr4.1:18738552-18738571 | None:intergenic | 35.0% | |
| GACAAAATTCAAATCCCTTC+CGG | + | chr4.1:18738390-18738409 | MS.gene36454:intron | 35.0% | |
| GAGGCTAAGGTTATATACAT+GGG | - | chr4.1:18738288-18738307 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | + | chr4.1:18737888-18737907 | MS.gene36454:CDS | 35.0% | |
| GTGTGAATTATTGGCAATTG+AGG | + | chr4.1:18738599-18738618 | MS.gene36454:intron | 35.0% | |
| TAATGATTCTGCCCCTTAAA+AGG | + | chr4.1:18738490-18738509 | MS.gene36454:intron | 35.0% | |
| TACGACATGGAAAGACTAAA+GGG | - | chr4.1:18738539-18738558 | None:intergenic | 35.0% | |
| TCATTTCCATTTCCGTAACT+TGG | - | chr4.1:18738935-18738954 | None:intergenic | 35.0% | |
| TCTATACCAAGTTACGGAAA+TGG | + | chr4.1:18738926-18738945 | MS.gene36454:CDS | 35.0% | |
| TGAAGATAAGTTTCATGGAG+AGG | - | chr4.1:18736846-18736865 | None:intergenic | 35.0% | |
| TGATTGGCATTAGACAATAG+CGG | - | chr4.1:18738089-18738108 | None:intergenic | 35.0% | |
| TGCCTAGTATTGTAAAGGAA+GGG | - | chr4.1:18738312-18738331 | None:intergenic | 35.0% | |
| TTAAGGGGCAGAATCATTAT+TGG | - | chr4.1:18738489-18738508 | None:intergenic | 35.0% | |
| TTACAGTCGATGAATATGGA+AGG | + | chr4.1:18737195-18737214 | MS.gene36454:CDS | 35.0% | |
| TTCACAAAAGAAGTTGAGCA+TGG | - | chr4.1:18736660-18736679 | None:intergenic | 35.0% | |
| TTCTTCGTTACAAAATGCAC+CGG | - | chr4.1:18738259-18738278 | None:intergenic | 35.0% | |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | chr4.1:18739087-18739106 | MS.gene36454:CDS | 35.0% |
| ! | ACACTGGTCTAATACTTTGT+TGG | + | chr4.1:18737698-18737717 | MS.gene36454:intron | 35.0% |
| ! | CACTGGTCTAATACTTTGTT+GGG | + | chr4.1:18737699-18737718 | MS.gene36454:intron | 35.0% |
| ! | CATGTCGTAGTTTTCAATTC+AGG | + | chr4.1:18738550-18738569 | MS.gene36454:intron | 35.0% |
| ! | CCCATTTTACAGTGTATCTT+AGG | - | chr4.1:18737319-18737338 | None:intergenic | 35.0% |
| ! | GGAAATGGATTTCATGTAGT+TGG | + | chr4.1:18737482-18737501 | MS.gene36454:intron | 35.0% |
| ! | TAAGTTTCATGGAGAGGTAT+AGG | - | chr4.1:18736840-18736859 | None:intergenic | 35.0% |
| !! | ATAAACTTGGTGTTTCTGAC+CGG | + | chr4.1:18738237-18738256 | MS.gene36454:intron | 35.0% |
| !! | GAATGTCTAAAGTGTTGGTA+TGG | - | chr4.1:18739127-18739146 | None:intergenic | 35.0% |
| !! | TAGTCTAGAGTCCCTTTTAA+GGG | - | chr4.1:18738505-18738524 | None:intergenic | 35.0% |
| !! | TTAGATATTGGCTTTGGAGA+GGG | - | chr4.1:18738162-18738181 | None:intergenic | 35.0% |
| !!! | AATTGAAGGAAGGTTTTGAG+GGG | + | chr4.1:18737276-18737295 | MS.gene36454:CDS | 35.0% |
| !!! | ATTCTGGTTTTAGAGTGTTG+TGG | - | chr4.1:18738193-18738212 | None:intergenic | 35.0% |
| !!! | TTCTGGTTTTAGAGTGTTGT+GGG | - | chr4.1:18738192-18738211 | None:intergenic | 35.0% |
| AAAAGAAGTTGAGCATGGTG+TGG | - | chr4.1:18736655-18736674 | None:intergenic | 40.0% | |
| AACTTTACAATTGACCCGGA+AGG | - | chr4.1:18738408-18738427 | None:intergenic | 40.0% | |
| AATCCTGAAGAGATTCCAGA+AGG | + | chr4.1:18737074-18737093 | MS.gene36454:CDS | 40.0% | |
| AATGAAGCTGGAAATGAGAC+AGG | + | chr4.1:18738950-18738969 | MS.gene36454:CDS | 40.0% | |
| AATGAGACAGGCTACATTGT+AGG | + | chr4.1:18738962-18738981 | MS.gene36454:CDS | 40.0% | |
| ACAAATCTCCCACTACAAAC+TGG | + | chr4.1:18737825-18737844 | MS.gene36454:CDS | 40.0% | |
| ACACAGAAAATGATAGCCAC+AGG | + | chr4.1:18736910-18736929 | MS.gene36454:CDS | 40.0% | |
| ACAGATATTCCGGATCCTTT+CGG | + | chr4.1:18737038-18737057 | MS.gene36454:CDS | 40.0% | |
| ACGACATGGAAAGACTAAAG+GGG | - | chr4.1:18738538-18738557 | None:intergenic | 40.0% | |
| ACTGTCCTAGATTCCAAGTT+TGG | - | chr4.1:18737569-18737588 | None:intergenic | 40.0% | |
| ACTTTACAATTGACCCGGAA+GGG | - | chr4.1:18738407-18738426 | None:intergenic | 40.0% | |
| ATCCTGAAGAGATTCCAGAA+GGG | + | chr4.1:18737075-18737094 | MS.gene36454:CDS | 40.0% | |
| ATGGAAAACTCCAAAACTGG+AGG | + | chr4.1:18738054-18738073 | MS.gene36454:intron | 40.0% | |
| ATTAGCACGAGTATGGATCA+GGG | + | chr4.1:18738650-18738669 | MS.gene36454:intron | 40.0% | |
| CACACTGCCTAGTATTGTAA+AGG | - | chr4.1:18738317-18738336 | None:intergenic | 40.0% | |
| CCTAGTATTGTAAAGGAAGG+GGG | - | chr4.1:18738310-18738329 | None:intergenic | 40.0% | |
| CTACGACATGGAAAGACTAA+AGG | - | chr4.1:18738540-18738559 | None:intergenic | 40.0% | |
| CTGCCTAGTATTGTAAAGGA+AGG | - | chr4.1:18738313-18738332 | None:intergenic | 40.0% | |
| CTTAGGTAGAGACTTCTCTT+TGG | - | chr4.1:18737302-18737321 | None:intergenic | 40.0% | |
| GATTGGCATTAGACAATAGC+GGG | - | chr4.1:18738088-18738107 | None:intergenic | 40.0% | |
| GCCTAGTATTGTAAAGGAAG+GGG | - | chr4.1:18738311-18738330 | None:intergenic | 40.0% | |
| GGAGGCTAAGGTTATATACA+TGG | - | chr4.1:18738289-18738308 | None:intergenic | 40.0% | |
| GGTTCTGTCAAGATAGTTGA+TGG | + | chr4.1:18739010-18739029 | MS.gene36454:CDS | 40.0% | |
| GTGGGGTGTAAGTTAGATAT+TGG | - | chr4.1:18738174-18738193 | None:intergenic | 40.0% | |
| TACGGAAATGGAAATGAAGC+TGG | + | chr4.1:18738938-18738957 | MS.gene36454:CDS | 40.0% | |
| TATCTTCATCATTGGGCTGT+TGG | + | chr4.1:18736858-18736877 | MS.gene36454:CDS | 40.0% | |
| TCAACTATCTTGACAGAACC+TGG | - | chr4.1:18739010-18739029 | None:intergenic | 40.0% | |
| TGGAAAACTCCAAAACTGGA+GGG | + | chr4.1:18738055-18738074 | MS.gene36454:intron | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | + | chr4.1:18737893-18737912 | MS.gene36454:CDS | 40.0% | |
| TGGGTGTTTAATGAGCAAGA+TGG | + | chr4.1:18737718-18737737 | MS.gene36454:intron | 40.0% | |
| TTAAGTGCTATATGCCCTCT+TGG | - | chr4.1:18736780-18736799 | None:intergenic | 40.0% | |
| TTACCTATCTCTATGCCGAA+AGG | - | chr4.1:18737056-18737075 | None:intergenic | 40.0% | |
| ! | CGAGATTTTATCATGGCGTT+CGG | - | chr4.1:18738750-18738769 | None:intergenic | 40.0% |
| ! | GAGTGGAATGTCTAAAGTGT+TGG | - | chr4.1:18739132-18739151 | None:intergenic | 40.0% |
| !! | ACACTGTAAAATGGGTTGCT+TGG | + | chr4.1:18737324-18737343 | MS.gene36454:CDS | 40.0% |
| !! | AGTCTAGAGTCCCTTTTAAG+GGG | - | chr4.1:18738504-18738523 | None:intergenic | 40.0% |
| !! | CACTGTAAAATGGGTTGCTT+GGG | + | chr4.1:18737325-18737344 | MS.gene36454:CDS | 40.0% |
| !! | CTAGTCTAGAGTCCCTTTTA+AGG | - | chr4.1:18738506-18738525 | None:intergenic | 40.0% |
| !! | GTTAGATATTGGCTTTGGAG+AGG | - | chr4.1:18738163-18738182 | None:intergenic | 40.0% |
| !! | TGAGTTGATTAGCACGAGTA+TGG | + | chr4.1:18738643-18738662 | MS.gene36454:intron | 40.0% |
| !! | TGTGGATCATGTTTTCAGGA+TGG | + | chr4.1:18738887-18738906 | MS.gene36454:intron | 40.0% |
| !!! | GGCCTGTTTTCTGAAATATG+TGG | + | chr4.1:18738869-18738888 | MS.gene36454:intron | 40.0% |
| !!! | TCTGGTTTTAGAGTGTTGTG+GGG | - | chr4.1:18738191-18738210 | None:intergenic | 40.0% |
| AATCCACAGTACTTTGGCCT+TGG | + | chr4.1:18736993-18737012 | MS.gene36454:CDS | 45.0% | |
| AATCTCCCACTACAAACTGG+TGG | + | chr4.1:18737828-18737847 | MS.gene36454:CDS | 45.0% | |
| ACATAGCCACCAGTTTGTAG+TGG | - | chr4.1:18737837-18737856 | None:intergenic | 45.0% | |
| AGAGATTCCAGAAGGGTTTG+AGG | + | chr4.1:18737082-18737101 | MS.gene36454:CDS | 45.0% | |
| AGGAACAGCGACAGATATTC+CGG | + | chr4.1:18737028-18737047 | MS.gene36454:CDS | 45.0% | |
| AGGGTTTGAGGACAAATGGT+TGG | + | chr4.1:18737094-18737113 | MS.gene36454:CDS | 45.0% | |
| AGGTCCTAGCTCGAATTTAG+GGG | - | chr4.1:18736718-18736737 | None:intergenic | 45.0% | |
| AGTATTGTAAAGGAAGGGGG+AGG | - | chr4.1:18738307-18738326 | None:intergenic | 45.0% | |
| ATCTCTATGCCGAAAGGATC+CGG | - | chr4.1:18737050-18737069 | None:intergenic | 45.0% | |
| CAGAAGGGTTTGAGGACAAA+TGG | + | chr4.1:18737090-18737109 | MS.gene36454:CDS | 45.0% | |
| CAGGTCCTAGCTCGAATTTA+GGG | - | chr4.1:18736719-18736738 | None:intergenic | 45.0% | |
| CATAGCCACCAGTTTGTAGT+GGG | - | chr4.1:18737836-18737855 | None:intergenic | 45.0% | |
| CATCAGCATTCAGGTGGAAT+TGG | + | chr4.1:18737873-18737892 | MS.gene36454:CDS | 45.0% | |
| CATTTGTCCTCAAACCCTTC+TGG | - | chr4.1:18737092-18737111 | None:intergenic | 45.0% | |
| CCCCCTTCCTTTACAATACT+AGG | + | chr4.1:18738307-18738326 | MS.gene36454:intron | 45.0% | |
| CGACATGGAAAGACTAAAGG+GGG | - | chr4.1:18738537-18738556 | None:intergenic | 45.0% | |
| GAACTCGGATCATGATTGCA+AGG | + | chr4.1:18737427-18737446 | MS.gene36454:CDS | 45.0% | |
| GATCCTTTCGGCATAGAGAT+AGG | + | chr4.1:18737050-18737069 | MS.gene36454:CDS | 45.0% | |
| GATTAGCACGAGTATGGATC+AGG | + | chr4.1:18738649-18738668 | MS.gene36454:intron | 45.0% | |
| GCTCTGATCATGTTCTTGTG+AGG | + | chr4.1:18736943-18736962 | MS.gene36454:CDS | 45.0% | |
| GGAAAACTCCAAAACTGGAG+GGG | + | chr4.1:18738056-18738075 | MS.gene36454:intron | 45.0% | |
| GTTCATGCTATTGATACGCG+CGG | + | chr4.1:18737122-18737141 | MS.gene36454:CDS | 45.0% | |
| TTAGCACGAGTATGGATCAG+GGG | + | chr4.1:18738651-18738670 | MS.gene36454:intron | 45.0% | |
| TTGTCCCCTAAATTCGAGCT+AGG | + | chr4.1:18736711-18736730 | MS.gene36454:CDS | 45.0% | |
| ! | AAGGAGCACACTGGAGTAAT+GGG | + | chr4.1:18739070-18739089 | MS.gene36454:CDS | 45.0% |
| ! | ACATTGACTGCGTGAATGCA+TGG | - | chr4.1:18737515-18737534 | None:intergenic | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | chr4.1:18739090-18739109 | MS.gene36454:CDS | 45.0% |
| !! | AACCCTTCTGGAATCTCTTC+AGG | - | chr4.1:18737080-18737099 | None:intergenic | 45.0% |
| !! | GCTGAAGTAGTTGATGATGC+TGG | + | chr4.1:18736810-18736829 | MS.gene36454:CDS | 45.0% |
| !!! | GGTTTTTTCCCCTCCAGTTT+TGG | - | chr4.1:18738067-18738086 | None:intergenic | 45.0% |
| ACCTGGTCGAGGATAACAAG+TGG | - | chr4.1:18738993-18739012 | None:intergenic | 50.0% | |
| ATCTTGACAGAACCTGGTCG+AGG | - | chr4.1:18739004-18739023 | None:intergenic | 50.0% | |
| CCAGGTCCTAGCTCGAATTT+AGG | - | chr4.1:18736720-18736739 | None:intergenic | 50.0% | |
| CCTAAATTCGAGCTAGGACC+TGG | + | chr4.1:18736717-18736736 | MS.gene36454:CDS | 50.0% | |
| GCTGTTGCTCATCAGCATTC+AGG | + | chr4.1:18737864-18737883 | MS.gene36454:CDS | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | chr4.1:18739105-18739124 | None:intergenic | 50.0% | |
| GTCTAACTACAGCAGCAGCA+AGG | + | chr4.1:18739051-18739070 | MS.gene36454:CDS | 50.0% | |
| GTTGCTCATCAGCATTCAGG+TGG | + | chr4.1:18737867-18737886 | MS.gene36454:CDS | 50.0% | |
| TGTCGCTGTTCCTCGTGTTT+CGG | - | chr4.1:18737021-18737040 | None:intergenic | 50.0% | |
| TTCCTCGTGTTTCGGATCCA+AGG | - | chr4.1:18737013-18737032 | None:intergenic | 50.0% | |
| ! | CAAGGAGCACACTGGAGTAA+TGG | + | chr4.1:18739069-18739088 | MS.gene36454:CDS | 50.0% |
| ! | CAGAGCTTTGTAGCATCCTG+TGG | - | chr4.1:18736929-18736948 | None:intergenic | 50.0% |
| !! | GATCCAAGGCCAAAGTACTG+TGG | - | chr4.1:18736999-18737018 | None:intergenic | 50.0% |
| !! | TCCACTTGTTATCCTCGACC+AGG | + | chr4.1:18738989-18739008 | MS.gene36454:CDS | 50.0% |
| GCGGCGCAGAGGATAAGTTA+GGG | + | chr4.1:18737141-18737160 | MS.gene36454:CDS | 55.0% | |
| GTAAAGGAAGGGGGAGGCTA+AGG | - | chr4.1:18738301-18738320 | None:intergenic | 55.0% | |
| !! | GGGTGAGTATTGAGCTCGTG+AGG | - | chr4.1:18738142-18738161 | None:intergenic | 55.0% |
| CGCGGCGCAGAGGATAAGTT+AGG | + | chr4.1:18737140-18737159 | MS.gene36454:CDS | 60.0% | |
| GGCCTTGGATCCGAAACACG+AGG | + | chr4.1:18737008-18737027 | MS.gene36454:CDS | 60.0% | |
| TATTGATACGCGCGGCGCAG+AGG | + | chr4.1:18737130-18737149 | MS.gene36454:CDS | 60.0% | |
| ! | AGCAGCAGCAAGGAGCACAC+TGG | + | chr4.1:18739061-18739080 | MS.gene36454:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 18736594 | 18739198 | 18736594 | ID=MS.gene36454 |
| chr4.1 | mRNA | 18736594 | 18739198 | 18736594 | ID=MS.gene36454.t1;Parent=MS.gene36454 |
| chr4.1 | exon | 18736594 | 18737448 | 18736594 | ID=MS.gene36454.t1.exon1;Parent=MS.gene36454.t1 |
| chr4.1 | CDS | 18736594 | 18737448 | 18736594 | ID=cds.MS.gene36454.t1;Parent=MS.gene36454.t1 |
| chr4.1 | exon | 18737756 | 18737914 | 18737756 | ID=MS.gene36454.t1.exon2;Parent=MS.gene36454.t1 |
| chr4.1 | CDS | 18737756 | 18737914 | 18737756 | ID=cds.MS.gene36454.t1;Parent=MS.gene36454.t1 |
| chr4.1 | exon | 18738905 | 18739198 | 18738905 | ID=MS.gene36454.t1.exon3;Parent=MS.gene36454.t1 |
| chr4.1 | CDS | 18738905 | 18739198 | 18738905 | ID=cds.MS.gene36454.t1;Parent=MS.gene36454.t1 |
| Gene Sequence |
| Protein sequence |
