Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37450.t1 | XP_013461828.1 | 98.2 | 387 | 7 | 0 | 1 | 387 | 1 | 387 | 1.20E-218 | 768.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37450.t1 | Q9M439 | 66.8 | 382 | 123 | 2 | 10 | 387 | 7 | 388 | 1.1e-145 | 517.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37450.t1 | A0A072V3G0 | 98.2 | 387 | 7 | 0 | 1 | 387 | 1 | 387 | 8.4e-219 | 768.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051946 | MS.gene37450 | 0.815002 | 1.16E-51 | -1.69E-46 |
MS.gene052922 | MS.gene37450 | 0.833202 | 6.11E-56 | -1.69E-46 |
MS.gene053549 | MS.gene37450 | 0.808425 | 3.12E-50 | -1.69E-46 |
MS.gene057014 | MS.gene37450 | 0.808591 | 2.87E-50 | -1.69E-46 |
MS.gene05726 | MS.gene37450 | 0.844094 | 9.35E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene43507 | MS.gene37450 | PPI |
MS.gene37450 | MS.gene09632 | PPI |
MS.gene015287 | MS.gene37450 | PPI |
MS.gene21440 | MS.gene37450 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37450.t1 | MTR_3g103580 | 98.191 | 387 | 7 | 0 | 1 | 387 | 1 | 387 | 0.0 | 784 |
MS.gene37450.t1 | MTR_3g103580 | 98.286 | 350 | 6 | 0 | 1 | 350 | 1 | 350 | 0.0 | 706 |
MS.gene37450.t1 | MTR_3g103580 | 98.762 | 323 | 4 | 0 | 65 | 387 | 1 | 323 | 0.0 | 659 |
MS.gene37450.t1 | MTR_5g014960 | 66.176 | 340 | 115 | 0 | 47 | 386 | 68 | 407 | 1.12e-167 | 475 |
MS.gene37450.t1 | MTR_4g092590 | 60.057 | 348 | 134 | 3 | 43 | 387 | 12 | 357 | 2.10e-150 | 429 |
MS.gene37450.t1 | MTR_4g092580 | 57.440 | 336 | 143 | 0 | 52 | 387 | 22 | 357 | 1.38e-146 | 419 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37450.t1 | AT1G10070 | 66.754 | 382 | 123 | 2 | 10 | 387 | 7 | 388 | 0.0 | 528 |
MS.gene37450.t1 | AT1G10070 | 66.754 | 382 | 123 | 2 | 10 | 387 | 7 | 388 | 0.0 | 528 |
MS.gene37450.t1 | AT1G10070 | 72.013 | 318 | 89 | 0 | 70 | 387 | 1 | 318 | 2.29e-173 | 486 |
MS.gene37450.t1 | AT1G10060 | 61.458 | 384 | 139 | 3 | 10 | 386 | 2 | 383 | 3.38e-172 | 486 |
MS.gene37450.t1 | AT1G10060 | 60.459 | 392 | 145 | 4 | 1 | 385 | 90 | 478 | 8.64e-171 | 486 |
MS.gene37450.t1 | AT3G49680 | 65.680 | 338 | 114 | 2 | 51 | 386 | 73 | 410 | 2.62e-162 | 461 |
MS.gene37450.t1 | AT3G49680 | 65.680 | 338 | 114 | 2 | 51 | 386 | 75 | 412 | 2.90e-162 | 461 |
MS.gene37450.t1 | AT5G65780 | 63.930 | 341 | 122 | 1 | 47 | 386 | 74 | 414 | 4.17e-162 | 461 |
MS.gene37450.t1 | AT1G10060 | 67.192 | 317 | 104 | 0 | 70 | 386 | 1 | 317 | 1.59e-158 | 448 |
MS.gene37450.t1 | AT1G10060 | 63.218 | 348 | 119 | 3 | 10 | 350 | 2 | 347 | 3.52e-156 | 444 |
MS.gene37450.t1 | AT1G10060 | 61.905 | 357 | 126 | 4 | 1 | 350 | 90 | 443 | 3.98e-155 | 446 |
MS.gene37450.t1 | AT1G50090 | 58.192 | 354 | 145 | 2 | 36 | 387 | 3 | 355 | 7.49e-154 | 438 |
MS.gene37450.t1 | AT1G50110 | 56.818 | 352 | 150 | 2 | 36 | 387 | 3 | 352 | 5.59e-152 | 433 |
MS.gene37450.t1 | AT1G50110 | 57.862 | 318 | 133 | 1 | 70 | 387 | 1 | 317 | 3.32e-140 | 402 |
MS.gene37450.t1 | AT3G19710 | 50.427 | 351 | 173 | 1 | 37 | 387 | 2 | 351 | 7.27e-135 | 390 |
MS.gene37450.t1 | AT1G10060 | 69.048 | 252 | 78 | 0 | 48 | 299 | 45 | 296 | 1.79e-127 | 369 |
MS.gene37450.t1 | AT1G10060 | 59.804 | 306 | 113 | 4 | 1 | 299 | 90 | 392 | 2.90e-126 | 370 |
Find 114 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTGAACTTTCCAAGTTTA+AGG | 0.116340 | 3.4:-91221716 | MS.gene37450:CDS |
TGTAGTGCTGGCCAAAATTT+TGG | 0.137189 | 3.4:-91219939 | MS.gene37450:CDS |
CATCACTTTACCTTCTATTC+TGG | 0.200728 | 3.4:+91214760 | None:intergenic |
AAATGGTACCGGTGCATAAT+TGG | 0.204590 | 3.4:+91217071 | None:intergenic |
TTAGGAAGTGGTCCGGTTCT+TGG | 0.250877 | 3.4:-91217341 | MS.gene37450:CDS |
ACCTGTTTGTATTCCTAAAA+TGG | 0.255480 | 3.4:+91214387 | None:intergenic |
GTTGTCCATGTCCAAAATTT+TGG | 0.259250 | 3.4:+91219928 | None:intergenic |
TGCCAGTGATTTGGGTTATC+AGG | 0.275271 | 3.4:-91215993 | MS.gene37450:intron |
CAATTCCGGACCCAACTTAC+AGG | 0.297018 | 3.4:-91220186 | MS.gene37450:intron |
AAAGCATACAGAAAGGAAAA+TGG | 0.301781 | 3.4:-91217671 | MS.gene37450:CDS |
CATTGAAATTGCCAGTGATT+TGG | 0.302811 | 3.4:-91216002 | MS.gene37450:CDS |
ATCATACCTGGCCATAATTT+AGG | 0.308609 | 3.4:+91219862 | None:intergenic |
TCCGCAGGGGTCCTAAATTA+TGG | 0.310746 | 3.4:-91219873 | MS.gene37450:CDS |
GCAAAGGGTCGTTGTATCTT+AGG | 0.318014 | 3.4:-91217373 | MS.gene37450:CDS |
GATTGGGACAGCCTTGGGTT+TGG | 0.329076 | 3.4:-91219996 | MS.gene37450:CDS |
GCCCTCCCCTCTTCCAATTC+CGG | 0.331887 | 3.4:-91220200 | MS.gene37450:CDS |
CTGTAAGTTGGGTCCGGAAT+TGG | 0.338583 | 3.4:+91220187 | None:intergenic |
CCCTGTTCGCAACTATTTCA+AGG | 0.338859 | 3.4:-91217276 | MS.gene37450:intron |
TCTTGTGATTCCGGAAAGTA+TGG | 0.340136 | 3.4:+91216033 | None:intergenic |
GGAAAGTATGGTTCCATTGA+TGG | 0.362249 | 3.4:+91216045 | None:intergenic |
ATGTGGATTGGGACAGCCTT+GGG | 0.366715 | 3.4:-91220001 | MS.gene37450:CDS |
CCTTGACATGTAGGTCTTGA+TGG | 0.367499 | 3.4:-91216629 | MS.gene37450:intron |
TATCTTAGGCCACTGCTCTT+AGG | 0.375755 | 3.4:-91217359 | MS.gene37450:CDS |
ATTGAAATTGCCAGTGATTT+GGG | 0.377285 | 3.4:-91216001 | MS.gene37450:CDS |
ACCTTGAAATAGTTGCGAAC+AGG | 0.382294 | 3.4:+91217275 | None:intergenic |
TGCTAGAGCAGTTTGCTTCA+AGG | 0.383554 | 3.4:+91217547 | None:intergenic |
TTGGACATGGACAACTTAAT+CGG | 0.392795 | 3.4:-91219920 | MS.gene37450:CDS |
TATATGAGGAATGTGTATTC+AGG | 0.397711 | 3.4:+91217305 | None:intergenic |
AGAAGCAGTTTCCTTAAACT+TGG | 0.398954 | 3.4:+91221705 | None:intergenic |
AAGTGGTCCGGTTCTTGGTT+TGG | 0.404166 | 3.4:-91217336 | MS.gene37450:CDS |
GTGGACTATAAAACAGGTTC+TGG | 0.405793 | 3.4:-91214436 | MS.gene37450:CDS |
TATTATAGTTACCTGTAAGT+TGG | 0.436071 | 3.4:+91220175 | None:intergenic |
CGTGCTTCGCAACGCGGGAC+TGG | 0.439406 | 3.4:-91217111 | MS.gene37450:CDS |
ATTATAGTTACCTGTAAGTT+GGG | 0.439858 | 3.4:+91220176 | None:intergenic |
ATTGATGGCAGGCGTTGAAA+TGG | 0.440858 | 3.4:+91216060 | None:intergenic |
AGGTAGTATTGAAGATAAGA+AGG | 0.442292 | 3.4:-91214368 | MS.gene37450:CDS |
ATCAATGGAACCATACTTTC+CGG | 0.443211 | 3.4:-91216043 | MS.gene37450:CDS |
CTTGCACAACTCTTGACAAA+TGG | 0.449586 | 3.4:+91214411 | None:intergenic |
CATGGACAACTTAATCGGTA+TGG | 0.455289 | 3.4:-91219915 | MS.gene37450:CDS |
TACCGGTGCATAATTGGAAA+TGG | 0.455649 | 3.4:+91217077 | None:intergenic |
ACTTAATTTGTATGTGGAAG+AGG | 0.457846 | 3.4:-91217142 | MS.gene37450:CDS |
ATTTCAACGCCTGCCATCAA+TGG | 0.460138 | 3.4:-91216058 | MS.gene37450:CDS |
GTATCACATACCAGAATAGA+AGG | 0.460502 | 3.4:-91214770 | MS.gene37450:intron |
AGGAAACTGCTTCTTCGTCC+TGG | 0.467038 | 3.4:-91221696 | MS.gene37450:CDS |
TGCAGGGTGGACTATAAAAC+AGG | 0.473120 | 3.4:-91214442 | MS.gene37450:intron |
ATCGGAAAATCCTCTGCTCT+TGG | 0.477180 | 3.4:+91216594 | None:intergenic |
AATGTGGATTGGGACAGCCT+TGG | 0.478960 | 3.4:-91220002 | MS.gene37450:CDS |
GTCCGGAATTGGAAGAGGGG+AGG | 0.483252 | 3.4:+91220198 | None:intergenic |
AATGCAATTCGCATGAAGAT+TGG | 0.484572 | 3.4:-91217620 | MS.gene37450:CDS |
CGCGCCACTTAATTTGTATG+TGG | 0.486258 | 3.4:-91217148 | MS.gene37450:CDS |
GGCATCAACAAATTGATCAA+TGG | 0.490126 | 3.4:+91217568 | None:intergenic |
TAATGTATAGGTTCCTCCAC+CGG | 0.490433 | 3.4:-91217396 | MS.gene37450:intron |
GCTGGAGCCAAACCAAGAAC+CGG | 0.491499 | 3.4:+91217329 | None:intergenic |
AGTTACCTGTAAGTTGGGTC+CGG | 0.496236 | 3.4:+91220181 | None:intergenic |
TGCTCTAGCAAACAAGCGTT+GGG | 0.496963 | 3.4:-91217534 | MS.gene37450:intron |
AGATACAACGACCCTTTGCC+CGG | 0.499668 | 3.4:+91217377 | None:intergenic |
CTGCTCTAGCAAACAAGCGT+TGG | 0.505553 | 3.4:-91217535 | MS.gene37450:CDS |
TAGGTTCCTCCACCGGGCAA+AGG | 0.509281 | 3.4:-91217389 | MS.gene37450:CDS |
AGGCCACTGCTCTTAGGAAG+TGG | 0.509303 | 3.4:-91217353 | MS.gene37450:CDS |
AGGTTCCTCCACCGGGCAAA+GGG | 0.509365 | 3.4:-91217388 | MS.gene37450:CDS |
AAGCATACAGAAAGGAAAAT+GGG | 0.510935 | 3.4:-91217670 | MS.gene37450:CDS |
CCTTGAAATAGTTGCGAACA+GGG | 0.513370 | 3.4:+91217276 | None:intergenic |
GCTGTCGGTGTTGCTCCTGT+AGG | 0.514968 | 3.4:-91214795 | MS.gene37450:CDS |
GTTGGGTCCGGAATTGGAAG+AGG | 0.515795 | 3.4:+91220193 | None:intergenic |
AACGACCCTTTGCCCGGTGG+AGG | 0.518065 | 3.4:+91217383 | None:intergenic |
ATGAGTACGCTAATGTGGAT+TGG | 0.520629 | 3.4:-91220013 | MS.gene37450:CDS |
TCCGGAATTGGAAGAGGGGA+GGG | 0.522473 | 3.4:+91220199 | None:intergenic |
TACGTTACAAAATGTAGTGC+TGG | 0.523205 | 3.4:-91219951 | MS.gene37450:CDS |
CTGTCGGTGTTGCTCCTGTA+GGG | 0.530130 | 3.4:-91214794 | MS.gene37450:CDS |
TTCTGTACAGGAACTGCTGT+CGG | 0.530561 | 3.4:-91214810 | MS.gene37450:CDS |
GGTAGTATTGAAGATAAGAA+GGG | 0.530796 | 3.4:-91214367 | MS.gene37450:CDS |
AACCATTTCCAATTATGCAC+CGG | 0.531718 | 3.4:-91217079 | MS.gene37450:intron |
AGGAATGTGTATTCAGGTGC+TGG | 0.532284 | 3.4:+91217311 | None:intergenic |
TCTTCCACATACAAATTAAG+TGG | 0.533831 | 3.4:+91217144 | None:intergenic |
TGGTTATCGTTCTTCCTCCA+AGG | 0.534170 | 3.4:-91221676 | MS.gene37450:intron |
GTAACGTACATGAAATCGGT+TGG | 0.536355 | 3.4:+91219966 | None:intergenic |
ATTGAACTTAGCCCATCCGC+AGG | 0.539047 | 3.4:-91219888 | MS.gene37450:CDS |
TGAGTACGCTAATGTGGATT+GGG | 0.540805 | 3.4:-91220012 | MS.gene37450:CDS |
AAAATACAGGGATTATTCGA+AGG | 0.546920 | 3.4:-91217698 | MS.gene37450:intron |
TAATTTAGGACCCCTGCGGA+TGG | 0.548755 | 3.4:+91219876 | None:intergenic |
AGGGGTCCTAAATTATGGCC+AGG | 0.559751 | 3.4:-91219868 | MS.gene37450:intron |
TACCTGATAACCCAAATCAC+TGG | 0.560844 | 3.4:+91215991 | None:intergenic |
CAGTCCCGCGTTGCGAAGCA+CGG | 0.561077 | 3.4:+91217112 | None:intergenic |
TTGACCGTGCTTCGCAACGC+GGG | 0.561096 | 3.4:-91217116 | MS.gene37450:CDS |
ATGGACAACTTAATCGGTAT+GGG | 0.561184 | 3.4:-91219914 | MS.gene37450:CDS |
TGGTATGTGATACTCCCTAC+AGG | 0.561876 | 3.4:+91214780 | None:intergenic |
CGATGATGAGTACGCTAATG+TGG | 0.569452 | 3.4:-91220018 | MS.gene37450:CDS |
AATGTATAGGTTCCTCCACC+GGG | 0.570735 | 3.4:-91217395 | MS.gene37450:intron |
TTGGGTCCGGAATTGGAAGA+GGG | 0.575596 | 3.4:+91220194 | None:intergenic |
GAACAGGGGAAGCATATATG+AGG | 0.580432 | 3.4:+91217291 | None:intergenic |
AGTATGGTTCCATTGATGGC+AGG | 0.580853 | 3.4:+91216049 | None:intergenic |
TAAAACGTTGATCACCTTGG+AGG | 0.582579 | 3.4:+91221662 | None:intergenic |
ACAGAAAACTTCATCTGCCT+CGG | 0.585007 | 3.4:+91214827 | None:intergenic |
AATTTAGGACCCCTGCGGAT+GGG | 0.586287 | 3.4:+91219877 | None:intergenic |
GGAAGAGCGCGTTGTTGCTG+TGG | 0.591202 | 3.4:-91214859 | MS.gene37450:CDS |
TTGGAGGAAGAACGATAACC+AGG | 0.591557 | 3.4:+91221678 | None:intergenic |
ACTGCTCTTAGGAAGTGGTC+CGG | 0.600004 | 3.4:-91217348 | MS.gene37450:CDS |
TCAACAAATTGATCAATGGA+AGG | 0.611879 | 3.4:+91217572 | None:intergenic |
TTTGACCGTGCTTCGCAACG+CGG | 0.611947 | 3.4:-91217117 | MS.gene37450:CDS |
GTATTGAAGATAAGAAGGGA+TGG | 0.616637 | 3.4:-91214363 | MS.gene37450:CDS |
TTGAACTTAGCCCATCCGCA+GGG | 0.617818 | 3.4:-91219887 | MS.gene37450:CDS |
CACATACAAATTAAGTGGCG+CGG | 0.630226 | 3.4:+91217149 | None:intergenic |
CAAAATAGAGCCAAGAGCAG+AGG | 0.632269 | 3.4:-91216604 | MS.gene37450:CDS |
TTGGCATGAGTCCAAACCCA+AGG | 0.634099 | 3.4:+91219985 | None:intergenic |
AGGCACGAAAGCATACAGAA+AGG | 0.658001 | 3.4:-91217678 | MS.gene37450:CDS |
TGAATCAAGGTATAACACAT+CGG | 0.667794 | 3.4:+91216576 | None:intergenic |
TAACAGATAGGGGCTTACAA+TGG | 0.677239 | 3.4:-91220235 | MS.gene37450:intron |
TGAACTTAGCCCATCCGCAG+GGG | 0.684106 | 3.4:-91219886 | MS.gene37450:CDS |
GGACCACTTCCTAAGAGCAG+TGG | 0.684872 | 3.4:+91217350 | None:intergenic |
TACAACGACCCTTTGCCCGG+TGG | 0.687415 | 3.4:+91217380 | None:intergenic |
CTTGAAATAGTTGCGAACAG+GGG | 0.708149 | 3.4:+91217277 | None:intergenic |
TGGGTCCGGAATTGGAAGAG+GGG | 0.711513 | 3.4:+91220195 | None:intergenic |
TGCTGTGGATGAATTGACCG+AGG | 0.715955 | 3.4:-91214844 | MS.gene37450:CDS |
GCCATAATTTAGGACCCCTG+CGG | 0.723216 | 3.4:+91219872 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 91214345 | 91221751 | 91214345 | ID=MS.gene37450 |
chr3.4 | mRNA | 91214345 | 91221751 | 91214345 | ID=MS.gene37450.t1;Parent=MS.gene37450 |
chr3.4 | exon | 91221677 | 91221751 | 91221677 | ID=MS.gene37450.t1.exon1;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91221677 | 91221751 | 91221677 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91220187 | 91220251 | 91220187 | ID=MS.gene37450.t1.exon2;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91220187 | 91220251 | 91220187 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91219869 | 91220043 | 91219869 | ID=MS.gene37450.t1.exon3;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91219869 | 91220043 | 91219869 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91217535 | 91217711 | 91217535 | ID=MS.gene37450.t1.exon4;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91217535 | 91217711 | 91217535 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91217277 | 91217408 | 91217277 | ID=MS.gene37450.t1.exon5;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91217277 | 91217408 | 91217277 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91217080 | 91217178 | 91217080 | ID=MS.gene37450.t1.exon6;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91217080 | 91217178 | 91217080 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91216522 | 91216638 | 91216522 | ID=MS.gene37450.t1.exon7;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91216522 | 91216638 | 91216522 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91215994 | 91216089 | 91215994 | ID=MS.gene37450.t1.exon8;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91215994 | 91216089 | 91215994 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91214771 | 91214883 | 91214771 | ID=MS.gene37450.t1.exon9;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91214771 | 91214883 | 91214771 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
chr3.4 | exon | 91214345 | 91214459 | 91214345 | ID=MS.gene37450.t1.exon10;Parent=MS.gene37450.t1 |
chr3.4 | CDS | 91214345 | 91214459 | 91214345 | ID=cds.MS.gene37450.t1;Parent=MS.gene37450.t1 |
Gene Sequence |
Protein sequence |