Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37972.t1 | AET00800.1 | 94.2 | 344 | 20 | 0 | 1 | 344 | 74 | 417 | 2.80E-179 | 637.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37972.t1 | Q55C80 | 30.2 | 371 | 209 | 13 | 7 | 340 | 10 | 367 | 3.7e-39 | 163.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37972.t1 | B7FK54 | 94.2 | 344 | 20 | 0 | 1 | 344 | 1 | 344 | 2.0e-179 | 637.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37972 | MS.gene41778 | PPI |
| MS.gene37972 | MS.gene067859 | PPI |
| MS.gene37972 | MS.gene042467 | PPI |
| MS.gene08162 | MS.gene37972 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37972.t1 | MTR_5g096040 | 94.186 | 344 | 20 | 0 | 1 | 344 | 74 | 417 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37972.t1 | AT5G63010 | 60.694 | 346 | 126 | 4 | 1 | 344 | 1 | 338 | 5.68e-154 | 436 |
Find 86 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAGTTAATAAGGTATT+TGG | 0.087837 | 5.1:-76705660 | None:intergenic |
| TAATTCAATGTGCTTGTATC+TGG | 0.217762 | 5.1:+76705350 | MS.gene37972:CDS |
| TGATATCCACCAGCCAAATT+TGG | 0.239532 | 5.1:+76705509 | MS.gene37972:CDS |
| TTTGCAATTGTCGCTATTAA+AGG | 0.243185 | 5.1:+76705831 | MS.gene37972:CDS |
| GAACTCTAAGGTCCACAAAA+TGG | 0.247499 | 5.1:+76705605 | MS.gene37972:CDS |
| ATCATAGCTTCCAGTTAATA+AGG | 0.268520 | 5.1:-76705667 | None:intergenic |
| CTAATTGAAGTCTCATTAAC+AGG | 0.277252 | 5.1:-76705729 | None:intergenic |
| GACCCAAATACCTTATTAAC+TGG | 0.308590 | 5.1:+76705657 | MS.gene37972:CDS |
| GAGCCAGTATATACCAAATT+TGG | 0.327127 | 5.1:-76705522 | None:intergenic |
| TTAGCTTAGGTGGAGGAGTT+TGG | 0.334473 | 5.1:+76705748 | MS.gene37972:CDS |
| CTCTTCTTGTATTTCCAGCT+TGG | 0.335154 | 5.1:-76705448 | None:intergenic |
| AGAGTTCTTAAATACAATAT+TGG | 0.350646 | 5.1:-76705589 | None:intergenic |
| TTCCAGTTAATAAGGTATTT+GGG | 0.361076 | 5.1:-76705659 | None:intergenic |
| CAGCCAAATTTGGTATATAC+TGG | 0.387945 | 5.1:+76705519 | MS.gene37972:CDS |
| CTTTCTATGACAAACTTGTC+AGG | 0.398507 | 5.1:+76705976 | MS.gene37972:CDS |
| TGAAATGCTTCCAGATCTAC+TGG | 0.403251 | 5.1:-76703986 | None:intergenic |
| GTGGCACATTGCTATTTAGA+AGG | 0.405453 | 5.1:+76703874 | MS.gene37972:CDS |
| TATTGTATTTAAGAACTCTA+AGG | 0.426890 | 5.1:+76705593 | MS.gene37972:CDS |
| TGGATGCTGCTAAAACATTC+TGG | 0.431326 | 5.1:-76703936 | None:intergenic |
| AATGAGACTTCAATTAGCTT+AGG | 0.435668 | 5.1:+76705735 | MS.gene37972:CDS |
| GGTGATCAACCCAGTAGATC+TGG | 0.443569 | 5.1:+76703976 | MS.gene37972:CDS |
| TTCTCTTCATGAATCCAAGC+TGG | 0.444048 | 5.1:+76705434 | MS.gene37972:CDS |
| AACTCTAAGGTCCACAAAAT+GGG | 0.447471 | 5.1:+76705606 | MS.gene37972:CDS |
| ATGCTGGATGGTTGCTCTGA+TGG | 0.458868 | 5.1:+76704159 | MS.gene37972:CDS |
| GCTTATCTAAAAGAGATTAC+AGG | 0.467091 | 5.1:+76705315 | MS.gene37972:CDS |
| ATGACAAACTTGTCAGGGTA+TGG | 0.475765 | 5.1:+76705982 | MS.gene37972:CDS |
| TAAAACAAGGCCTTGAATGA+AGG | 0.482380 | 5.1:-76705787 | None:intergenic |
| GCTTAGGTGGAGGAGTTTGG+AGG | 0.486854 | 5.1:+76705751 | MS.gene37972:CDS |
| CAATGTGCTTGTATCTGGAT+TGG | 0.486989 | 5.1:+76705355 | MS.gene37972:CDS |
| TTAGCTGCTTGCATGCATAA+TGG | 0.487625 | 5.1:+76705807 | MS.gene37972:CDS |
| AAGCATCATCCCTTCATTCA+AGG | 0.496872 | 5.1:+76705777 | MS.gene37972:CDS |
| CTTAGGTGGAGGAGTTTGGA+GGG | 0.500724 | 5.1:+76705752 | MS.gene37972:CDS |
| AAGCACGATTCCCTTGCATA+TGG | 0.502511 | 5.1:+76705885 | MS.gene37972:CDS |
| ACCTTCCTGTAGTGTGTAAG+TGG | 0.504183 | 5.1:-76703956 | None:intergenic |
| AGGCGACAAAACTGAAGTGT+TGG | 0.507080 | 5.1:+76705851 | MS.gene37972:CDS |
| AGCATCCACTTACACACTAC+AGG | 0.515191 | 5.1:+76703951 | MS.gene37972:CDS |
| GGAGAAATAAATCACATGGA+AGG | 0.521325 | 5.1:+76705924 | MS.gene37972:CDS |
| ACATTCTGGTGCCCATTATG+TGG | 0.522358 | 5.1:-76703922 | None:intergenic |
| TTTAATATTGATGCGGACAC+AGG | 0.527015 | 5.1:+76704012 | MS.gene37972:CDS |
| AAAACAAGGCCTTGAATGAA+GGG | 0.528095 | 5.1:-76705786 | None:intergenic |
| TGGCTGGTGGATATCAAAAG+AGG | 0.530751 | 5.1:-76705502 | None:intergenic |
| ATAAAGTGGAACGCACCTGC+AGG | 0.531729 | 5.1:+76704081 | MS.gene37972:CDS |
| GAGAAATAAATCACATGGAA+GGG | 0.533549 | 5.1:+76705925 | MS.gene37972:CDS |
| AAAGAGCAAGTAGCAACTAC+TGG | 0.540443 | 5.1:-76705957 | None:intergenic |
| GCCAGTCTGCTCCATATGCA+AGG | 0.541177 | 5.1:-76705896 | None:intergenic |
| GAGACTTCAATTAGCTTAGG+TGG | 0.547687 | 5.1:+76705738 | MS.gene37972:CDS |
| TTCACTCTTTAATATTGATG+CGG | 0.548091 | 5.1:+76704005 | MS.gene37972:CDS |
| TCATCCACATCGATCACAGT+AGG | 0.553375 | 5.1:+76705384 | MS.gene37972:CDS |
| AAAGGACTCATGTTCCCTGC+AGG | 0.554338 | 5.1:-76704096 | None:intergenic |
| TTAGGTCAAGCAGATGCTGA+TGG | 0.559666 | 5.1:+76704120 | MS.gene37972:CDS |
| GGTTGCTCTGATGGAGTACA+AGG | 0.562231 | 5.1:+76704168 | MS.gene37972:CDS |
| ATGATGAATACTTGAGGGTG+TGG | 0.565089 | 5.1:+76705685 | MS.gene37972:CDS |
| TACAAGATAATATCATTACA+TGG | 0.572100 | 5.1:-76706008 | None:intergenic |
| ATACTTGAGAATTAAGATGC+TGG | 0.572344 | 5.1:+76704143 | MS.gene37972:CDS |
| CTATTTGGTCAGAATGGATG+TGG | 0.573185 | 5.1:+76703855 | None:intergenic |
| TATGGAGCAGACTGGCAGAA+AGG | 0.573876 | 5.1:+76705903 | MS.gene37972:CDS |
| TTTCTATGACAAACTTGTCA+GGG | 0.580064 | 5.1:+76705977 | MS.gene37972:CDS |
| TTCTTAAATACAATATTGGA+AGG | 0.583140 | 5.1:-76705585 | None:intergenic |
| GCATGCAAGCAGCTAAAACA+AGG | 0.592697 | 5.1:-76705800 | None:intergenic |
| AATAAGGTATTTGGGTCATG+AGG | 0.593807 | 5.1:-76705651 | None:intergenic |
| CAGTATATACCAAATTTGGC+TGG | 0.593820 | 5.1:-76705518 | None:intergenic |
| ACTTCAATTAGCTTAGGTGG+AGG | 0.594290 | 5.1:+76705741 | MS.gene37972:CDS |
| AAGCTATGATGAATACTTGA+GGG | 0.595787 | 5.1:+76705680 | MS.gene37972:CDS |
| AGCTGGAAATACAAGAAGAG+TGG | 0.596685 | 5.1:+76705451 | MS.gene37972:CDS |
| TATATACCAAATTTGGCTGG+TGG | 0.599457 | 5.1:-76705515 | None:intergenic |
| CATCCACATCGATCACAGTA+GGG | 0.600078 | 5.1:+76705385 | MS.gene37972:CDS |
| TTTATAGTGAGGAGACTAGT+GGG | 0.602510 | 5.1:+76704049 | MS.gene37972:CDS |
| GGAAATACAAGAAGAGTGGA+AGG | 0.610010 | 5.1:+76705455 | MS.gene37972:CDS |
| GAAGCTATGATGAATACTTG+AGG | 0.614708 | 5.1:+76705679 | MS.gene37972:CDS |
| CCAGTCTGCTCCATATGCAA+GGG | 0.615600 | 5.1:-76705895 | None:intergenic |
| ACTGTGATCGATGTGGATGA+AGG | 0.620948 | 5.1:-76705381 | None:intergenic |
| CCCTTGCATATGGAGCAGAC+TGG | 0.623412 | 5.1:+76705895 | MS.gene37972:CDS |
| ACAAACTTGTCAGGGTATGG+AGG | 0.625101 | 5.1:+76705985 | MS.gene37972:CDS |
| ATCACAGTAGGGCTTTCTGA+TGG | 0.627183 | 5.1:+76705396 | MS.gene37972:CDS |
| TAAAGTGGAACGCACCTGCA+GGG | 0.632532 | 5.1:+76704082 | MS.gene37972:CDS |
| GAAAGGAGAAATAAATCACA+TGG | 0.632984 | 5.1:+76705920 | MS.gene37972:CDS |
| ACAACAAAACTTGCAATCGT+CGG | 0.634703 | 5.1:-76705544 | None:intergenic |
| GCTTGACACGGTTTATAGTG+AGG | 0.636453 | 5.1:+76704038 | MS.gene37972:CDS |
| TTGAGAATTAAGATGCTGGA+TGG | 0.643048 | 5.1:+76704147 | MS.gene37972:CDS |
| GGACACAGGCAAGCTTGACA+CGG | 0.648004 | 5.1:+76704026 | MS.gene37972:CDS |
| TGATGAATACTTGAGGGTGT+GGG | 0.648470 | 5.1:+76705686 | MS.gene37972:CDS |
| GTTTATAGTGAGGAGACTAG+TGG | 0.658580 | 5.1:+76704048 | MS.gene37972:CDS |
| AGAAGGTAATGCAGACGCTG+TGG | 0.661380 | 5.1:+76703891 | MS.gene37972:CDS |
| TCCACTTACACACTACAGGA+AGG | 0.668974 | 5.1:+76703955 | MS.gene37972:CDS |
| GAAATGCTTCCAGATCTACT+GGG | 0.705745 | 5.1:-76703985 | None:intergenic |
| AAGCCCTACTGTGATCGATG+TGG | 0.706132 | 5.1:-76705388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTTTATTTTTTT+TGG | + | chr5.1:76704784-76704803 | MS.gene37972:intron | 0.0% |
| !! | TTGATATAACTAAAATTAGA+AGG | - | chr5.1:76705013-76705032 | None:intergenic | 15.0% |
| !!! | AAGGTAGTTATAAATTTTAT+AGG | - | chr5.1:76704994-76705013 | None:intergenic | 15.0% |
| !!! | AGGTAGTTATAAATTTTATA+GGG | - | chr5.1:76704993-76705012 | None:intergenic | 15.0% |
| !!! | ATTATTGAATATATGTCTTT+TGG | - | chr5.1:76704520-76704539 | None:intergenic | 15.0% |
| !!! | TTTTAGTTATATCAAAGATT+TGG | + | chr5.1:76705018-76705037 | MS.gene37972:intron | 15.0% |
| !! | AAATTATACAGTAATTACCT+CGG | + | chr5.1:76704274-76704293 | MS.gene37972:intron | 20.0% |
| !! | AAGTTTAACTGTAATGTAAA+AGG | - | chr5.1:76705157-76705176 | None:intergenic | 20.0% |
| !! | AGAGTTCTTAAATACAATAT+TGG | - | chr5.1:76705592-76705611 | None:intergenic | 20.0% |
| !! | ATAAAATGTAACTCAACAAA+AGG | - | chr5.1:76705262-76705281 | None:intergenic | 20.0% |
| !! | ATAAAGGTAAAAATAGAAAC+TGG | - | chr5.1:76704888-76704907 | None:intergenic | 20.0% |
| !! | ATATATAACATAACTCTTCT+AGG | + | chr5.1:76704855-76704874 | MS.gene37972:intron | 20.0% |
| !! | ATTTATACAGTACTATACTA+GGG | - | chr5.1:76704940-76704959 | None:intergenic | 20.0% |
| !! | GAAACTATTTAATATGTGTT+TGG | - | chr5.1:76704763-76704782 | None:intergenic | 20.0% |
| !! | TACAAGATAATATCATTACA+TGG | - | chr5.1:76706011-76706030 | None:intergenic | 20.0% |
| !! | TATATAACATAACTCTTCTA+GGG | + | chr5.1:76704856-76704875 | MS.gene37972:intron | 20.0% |
| !! | TATTGTATTTAAGAACTCTA+AGG | + | chr5.1:76705593-76705612 | MS.gene37972:CDS | 20.0% |
| !! | TATTTATACAGTACTATACT+AGG | - | chr5.1:76704941-76704960 | None:intergenic | 20.0% |
| !! | TTCTTAAATACAATATTGGA+AGG | - | chr5.1:76705588-76705607 | None:intergenic | 20.0% |
| !!! | ATATATATTTTATAGCTAGC+TGG | + | chr5.1:76705059-76705078 | MS.gene37972:intron | 20.0% |
| !!! | TAAAAGGTTGTATTTTGTAA+TGG | - | chr5.1:76705141-76705160 | None:intergenic | 20.0% |
| ! | AAAGAAGAAACTTTGATATG+TGG | - | chr5.1:76705193-76705212 | None:intergenic | 25.0% |
| ! | ACTATTTAATATGTGTTTGG+TGG | - | chr5.1:76704760-76704779 | None:intergenic | 25.0% |
| ! | ATAGGAACAAATCTGATATA+AGG | - | chr5.1:76704650-76704669 | None:intergenic | 25.0% |
| ! | CAATTATAATGAGACGATAA+AGG | - | chr5.1:76704904-76704923 | None:intergenic | 25.0% |
| ! | TTCACTCTTTAATATTGATG+CGG | + | chr5.1:76704005-76704024 | MS.gene37972:CDS | 25.0% |
| ! | TTTATACAGTACTATACTAG+GGG | - | chr5.1:76704939-76704958 | None:intergenic | 25.0% |
| !! | GAATAACAGAAGAATTTGTT+TGG | + | chr5.1:76704717-76704736 | MS.gene37972:intron | 25.0% |
| !! | TTCCAGTTAATAAGGTATTT+GGG | - | chr5.1:76705662-76705681 | None:intergenic | 25.0% |
| !!! | CAAAATTGTGATTGATTTGA+TGG | + | chr5.1:76705287-76705306 | MS.gene37972:intron | 25.0% |
| AAAGGAATGCAATATTTCCA+TGG | - | chr5.1:76705244-76705263 | None:intergenic | 30.0% | |
| AAGCTATGATGAATACTTGA+GGG | + | chr5.1:76705680-76705699 | MS.gene37972:CDS | 30.0% | |
| ACTGCTTATCCTTGATAAAT+TGG | + | chr5.1:76704472-76704491 | MS.gene37972:intron | 30.0% | |
| ATACTTGAGAATTAAGATGC+TGG | + | chr5.1:76704143-76704162 | MS.gene37972:CDS | 30.0% | |
| ATCATAGCTTCCAGTTAATA+AGG | - | chr5.1:76705670-76705689 | None:intergenic | 30.0% | |
| CTAATTGAAGTCTCATTAAC+AGG | - | chr5.1:76705732-76705751 | None:intergenic | 30.0% | |
| CTGAACATTATGAACAATGA+TGG | + | chr5.1:76704687-76704706 | MS.gene37972:intron | 30.0% | |
| GAAAGGAGAAATAAATCACA+TGG | + | chr5.1:76705920-76705939 | MS.gene37972:CDS | 30.0% | |
| GAGAAATAAATCACATGGAA+GGG | + | chr5.1:76705925-76705944 | MS.gene37972:CDS | 30.0% | |
| GCTTATCTAAAAGAGATTAC+AGG | + | chr5.1:76705315-76705334 | MS.gene37972:CDS | 30.0% | |
| TAATTCAATGTGCTTGTATC+TGG | + | chr5.1:76705350-76705369 | MS.gene37972:CDS | 30.0% | |
| TTTAATAGCAGCTATTGTTG+TGG | + | chr5.1:76704382-76704401 | MS.gene37972:intron | 30.0% | |
| TTTCTATGACAAACTTGTCA+GGG | + | chr5.1:76705977-76705996 | MS.gene37972:CDS | 30.0% | |
| TTTGCAATTGTCGCTATTAA+AGG | + | chr5.1:76705831-76705850 | MS.gene37972:CDS | 30.0% | |
| ! | AATGAGACTTCAATTAGCTT+AGG | + | chr5.1:76705735-76705754 | MS.gene37972:CDS | 30.0% |
| ! | CAGTATCATGATGTGTTTTT+GGG | - | chr5.1:76704607-76704626 | None:intergenic | 30.0% |
| ! | CTTCCAGTTAATAAGGTATT+TGG | - | chr5.1:76705663-76705682 | None:intergenic | 30.0% |
| ! | TCAGATTTGTTCCTATTTCT+AGG | + | chr5.1:76704654-76704673 | MS.gene37972:intron | 30.0% |
| ! | TCAGTATCATGATGTGTTTT+TGG | - | chr5.1:76704608-76704627 | None:intergenic | 30.0% |
| !! | ATTTGTTCCTATTTCTAGGA+AGG | + | chr5.1:76704658-76704677 | MS.gene37972:intron | 30.0% |
| AAAACAAGGCCTTGAATGAA+GGG | - | chr5.1:76705789-76705808 | None:intergenic | 35.0% | |
| AATGCAATATTTCCATGGCA+AGG | - | chr5.1:76705239-76705258 | None:intergenic | 35.0% | |
| ACAACAAAACTTGCAATCGT+CGG | - | chr5.1:76705547-76705566 | None:intergenic | 35.0% | |
| ATAAGCAGTGTTGTCAATCA+CGG | - | chr5.1:76704461-76704480 | None:intergenic | 35.0% | |
| CAGCCAAATTTGGTATATAC+TGG | + | chr5.1:76705519-76705538 | MS.gene37972:CDS | 35.0% | |
| CAGTATATACCAAATTTGGC+TGG | - | chr5.1:76705521-76705540 | None:intergenic | 35.0% | |
| CTTTCTATGACAAACTTGTC+AGG | + | chr5.1:76705976-76705995 | MS.gene37972:CDS | 35.0% | |
| GAAGCTATGATGAATACTTG+AGG | + | chr5.1:76705679-76705698 | MS.gene37972:CDS | 35.0% | |
| GACCCAAATACCTTATTAAC+TGG | + | chr5.1:76705657-76705676 | MS.gene37972:CDS | 35.0% | |
| GAGCCAGTATATACCAAATT+TGG | - | chr5.1:76705525-76705544 | None:intergenic | 35.0% | |
| GGAGAAATAAATCACATGGA+AGG | + | chr5.1:76705924-76705943 | MS.gene37972:CDS | 35.0% | |
| TAAAACAAGGCCTTGAATGA+AGG | - | chr5.1:76705790-76705809 | None:intergenic | 35.0% | |
| TATATACCAAATTTGGCTGG+TGG | - | chr5.1:76705518-76705537 | None:intergenic | 35.0% | |
| TATCCTTGATAAATTGGCAG+TGG | + | chr5.1:76704478-76704497 | MS.gene37972:intron | 35.0% | |
| TTGAGAATTAAGATGCTGGA+TGG | + | chr5.1:76704147-76704166 | MS.gene37972:CDS | 35.0% | |
| TTTAATATTGATGCGGACAC+AGG | + | chr5.1:76704012-76704031 | MS.gene37972:CDS | 35.0% | |
| TTTATAGTGAGGAGACTAGT+GGG | + | chr5.1:76704049-76704068 | MS.gene37972:CDS | 35.0% | |
| TTTCCACTGCCAATTTATCA+AGG | - | chr5.1:76704484-76704503 | None:intergenic | 35.0% | |
| ! | AATAAGGTATTTGGGTCATG+AGG | - | chr5.1:76705654-76705673 | None:intergenic | 35.0% |
| ! | AGGCACATGATTTTGAACTT+TGG | + | chr5.1:76705475-76705494 | MS.gene37972:CDS | 35.0% |
| ! | CCTTCTGATTCTGAAAAAAG+TGG | - | chr5.1:76705097-76705116 | None:intergenic | 35.0% |
| ! | GCATTTTCCTTCCTAGAAAT+AGG | - | chr5.1:76704668-76704687 | None:intergenic | 35.0% |
| ! | TATGTGTTTGGTGGAAATCA+CGG | - | chr5.1:76704751-76704770 | None:intergenic | 35.0% |
| ! | TTTGGTTTCTCTACATGCAA+AGG | + | chr5.1:76705036-76705055 | MS.gene37972:intron | 35.0% |
| !! | AACTCTAAGGTCCACAAAAT+GGG | + | chr5.1:76705606-76705625 | MS.gene37972:CDS | 35.0% |
| !! | ATTGTGATTGATTTGATGGC+AGG | + | chr5.1:76705291-76705310 | MS.gene37972:intron | 35.0% |
| !! | TGGAGTTTTGTCCACATAAT+GGG | + | chr5.1:76703911-76703930 | MS.gene37972:CDS | 35.0% |
| !! | TTGTGATTGATTTGATGGCA+GGG | + | chr5.1:76705292-76705311 | MS.gene37972:intron | 35.0% |
| !!! | ACGATTGCAAGTTTTGTTGT+TGG | + | chr5.1:76705547-76705566 | MS.gene37972:CDS | 35.0% |
| !!! | AGTTTTGTTGTTGGGATTTG+AGG | + | chr5.1:76705556-76705575 | MS.gene37972:CDS | 35.0% |
| !!! | CCACTTTTTTCAGAATCAGA+AGG | + | chr5.1:76705094-76705113 | MS.gene37972:intron | 35.0% |
| !!! | CGATTGCAAGTTTTGTTGTT+GGG | + | chr5.1:76705548-76705567 | MS.gene37972:CDS | 35.0% |
| !!! | GTTTTGTTGTTGGGATTTGA+GGG | + | chr5.1:76705557-76705576 | MS.gene37972:CDS | 35.0% |
| AAAGAGCAAGTAGCAACTAC+TGG | - | chr5.1:76705960-76705979 | None:intergenic | 40.0% | |
| AACTGCTTCGTTGTGAAAGT+AGG | + | chr5.1:76704544-76704563 | MS.gene37972:intron | 40.0% | |
| AAGCATCATCCCTTCATTCA+AGG | + | chr5.1:76705777-76705796 | MS.gene37972:CDS | 40.0% | |
| AGCTGGAAATACAAGAAGAG+TGG | + | chr5.1:76705451-76705470 | MS.gene37972:CDS | 40.0% | |
| ATGACAAACTTGTCAGGGTA+TGG | + | chr5.1:76705982-76706001 | MS.gene37972:CDS | 40.0% | |
| ATGATGAATACTTGAGGGTG+TGG | + | chr5.1:76705685-76705704 | MS.gene37972:CDS | 40.0% | |
| CAATGTGCTTGTATCTGGAT+TGG | + | chr5.1:76705355-76705374 | MS.gene37972:CDS | 40.0% | |
| CTCTTCTTGTATTTCCAGCT+TGG | - | chr5.1:76705451-76705470 | None:intergenic | 40.0% | |
| GAAATGCTTCCAGATCTACT+GGG | - | chr5.1:76703988-76704007 | None:intergenic | 40.0% | |
| GCATCTGCTTGACCTAAAAA+AGG | - | chr5.1:76704117-76704136 | None:intergenic | 40.0% | |
| GGAAATACAAGAAGAGTGGA+AGG | + | chr5.1:76705455-76705474 | MS.gene37972:CDS | 40.0% | |
| GTTTATAGTGAGGAGACTAG+TGG | + | chr5.1:76704048-76704067 | MS.gene37972:CDS | 40.0% | |
| TGAAATGCTTCCAGATCTAC+TGG | - | chr5.1:76703989-76704008 | None:intergenic | 40.0% | |
| TGATATCCACCAGCCAAATT+TGG | + | chr5.1:76705509-76705528 | MS.gene37972:CDS | 40.0% | |
| TGGATGCTGCTAAAACATTC+TGG | - | chr5.1:76703939-76703958 | None:intergenic | 40.0% | |
| TTAGCTGCTTGCATGCATAA+TGG | + | chr5.1:76705807-76705826 | MS.gene37972:CDS | 40.0% | |
| TTCTCTTCATGAATCCAAGC+TGG | + | chr5.1:76705434-76705453 | MS.gene37972:CDS | 40.0% | |
| ! | ACTTCAATTAGCTTAGGTGG+AGG | + | chr5.1:76705741-76705760 | MS.gene37972:CDS | 40.0% |
| ! | ATGTGTTTGGTGGAAATCAC+GGG | - | chr5.1:76704750-76704769 | None:intergenic | 40.0% |
| ! | GAGACTTCAATTAGCTTAGG+TGG | + | chr5.1:76705738-76705757 | MS.gene37972:CDS | 40.0% |
| ! | GTGGGATTTTCGACATAAAG+TGG | + | chr5.1:76704067-76704086 | MS.gene37972:CDS | 40.0% |
| ! | TGATGAATACTTGAGGGTGT+GGG | + | chr5.1:76705686-76705705 | MS.gene37972:CDS | 40.0% |
| ! | TGCAAGTAACACCCATTTTG+TGG | - | chr5.1:76705620-76705639 | None:intergenic | 40.0% |
| !! | GAACTCTAAGGTCCACAAAA+TGG | + | chr5.1:76705605-76705624 | MS.gene37972:CDS | 40.0% |
| !! | GTGGAGTTTTGTCCACATAA+TGG | + | chr5.1:76703910-76703929 | MS.gene37972:CDS | 40.0% |
| !! | GTGGCACATTGCTATTTAGA+AGG | + | chr5.1:76703874-76703893 | MS.gene37972:CDS | 40.0% |
| !! | TGTGATTGATTTGATGGCAG+GGG | + | chr5.1:76705293-76705312 | MS.gene37972:intron | 40.0% |
| !!! | ATATGTCTTTTGGTGCTCTG+TGG | - | chr5.1:76704510-76704529 | None:intergenic | 40.0% |
| !!! | GGGAACATGAGTCCTTTTTT+AGG | + | chr5.1:76704102-76704121 | MS.gene37972:CDS | 40.0% |
| AAGCACGATTCCCTTGCATA+TGG | + | chr5.1:76705885-76705904 | MS.gene37972:CDS | 45.0% | |
| ACAAACTTGTCAGGGTATGG+AGG | + | chr5.1:76705985-76706004 | MS.gene37972:CDS | 45.0% | |
| ACATTCTGGTGCCCATTATG+TGG | - | chr5.1:76703925-76703944 | None:intergenic | 45.0% | |
| ACCTTCCTGTAGTGTGTAAG+TGG | - | chr5.1:76703959-76703978 | None:intergenic | 45.0% | |
| ACTGTGATCGATGTGGATGA+AGG | - | chr5.1:76705384-76705403 | None:intergenic | 45.0% | |
| AGCATCCACTTACACACTAC+AGG | + | chr5.1:76703951-76703970 | MS.gene37972:CDS | 45.0% | |
| AGGCGACAAAACTGAAGTGT+TGG | + | chr5.1:76705851-76705870 | MS.gene37972:CDS | 45.0% | |
| ATCACAGTAGGGCTTTCTGA+TGG | + | chr5.1:76705396-76705415 | MS.gene37972:CDS | 45.0% | |
| CAATCACGGATCACAGGAAA+TGG | - | chr5.1:76704447-76704466 | None:intergenic | 45.0% | |
| CATCCACATCGATCACAGTA+GGG | + | chr5.1:76705385-76705404 | MS.gene37972:CDS | 45.0% | |
| GCATGCAAGCAGCTAAAACA+AGG | - | chr5.1:76705803-76705822 | None:intergenic | 45.0% | |
| GCTTGACACGGTTTATAGTG+AGG | + | chr5.1:76704038-76704057 | MS.gene37972:CDS | 45.0% | |
| TCATCCACATCGATCACAGT+AGG | + | chr5.1:76705384-76705403 | MS.gene37972:CDS | 45.0% | |
| TCCACTTACACACTACAGGA+AGG | + | chr5.1:76703955-76703974 | MS.gene37972:CDS | 45.0% | |
| TGTTGTCAATCACGGATCAC+AGG | - | chr5.1:76704453-76704472 | None:intergenic | 45.0% | |
| TTAGCTTAGGTGGAGGAGTT+TGG | + | chr5.1:76705748-76705767 | MS.gene37972:CDS | 45.0% | |
| TTAGGTCAAGCAGATGCTGA+TGG | + | chr5.1:76704120-76704139 | MS.gene37972:CDS | 45.0% | |
| ! | TGGCTGGTGGATATCAAAAG+AGG | - | chr5.1:76705505-76705524 | None:intergenic | 45.0% |
| !! | ACCTCGGTGTTGTCAAATAG+CGG | + | chr5.1:76704290-76704309 | MS.gene37972:intron | 45.0% |
| AAAGGACTCATGTTCCCTGC+AGG | - | chr5.1:76704099-76704118 | None:intergenic | 50.0% | |
| AAGCCCTACTGTGATCGATG+TGG | - | chr5.1:76705391-76705410 | None:intergenic | 50.0% | |
| AGAAGGTAATGCAGACGCTG+TGG | + | chr5.1:76703891-76703910 | MS.gene37972:CDS | 50.0% | |
| ATAAAGTGGAACGCACCTGC+AGG | + | chr5.1:76704081-76704100 | MS.gene37972:CDS | 50.0% | |
| ATGCTGGATGGTTGCTCTGA+TGG | + | chr5.1:76704159-76704178 | MS.gene37972:CDS | 50.0% | |
| CCAGTCTGCTCCATATGCAA+GGG | - | chr5.1:76705898-76705917 | None:intergenic | 50.0% | |
| CTTAGGTGGAGGAGTTTGGA+GGG | + | chr5.1:76705752-76705771 | MS.gene37972:CDS | 50.0% | |
| GGTGATCAACCCAGTAGATC+TGG | + | chr5.1:76703976-76703995 | MS.gene37972:CDS | 50.0% | |
| GGTTGCTCTGATGGAGTACA+AGG | + | chr5.1:76704168-76704187 | MS.gene37972:CDS | 50.0% | |
| TAAAGTGGAACGCACCTGCA+GGG | + | chr5.1:76704082-76704101 | MS.gene37972:CDS | 50.0% | |
| TATGGAGCAGACTGGCAGAA+AGG | + | chr5.1:76705903-76705922 | MS.gene37972:CDS | 50.0% | |
| CCCTTGCATATGGAGCAGAC+TGG | + | chr5.1:76705895-76705914 | MS.gene37972:CDS | 55.0% | |
| GCCAGTCTGCTCCATATGCA+AGG | - | chr5.1:76705899-76705918 | None:intergenic | 55.0% | |
| GCCGCTATTTGACAACACCG+AGG | - | chr5.1:76704294-76704313 | None:intergenic | 55.0% | |
| GCTTAGGTGGAGGAGTTTGG+AGG | + | chr5.1:76705751-76705770 | MS.gene37972:CDS | 55.0% | |
| GGACACAGGCAAGCTTGACA+CGG | + | chr5.1:76704026-76704045 | MS.gene37972:CDS | 55.0% | |
| TAGCGACACATGCCTTGCCA+TGG | + | chr5.1:76705224-76705243 | MS.gene37972:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76703868 | 76706031 | 76703868 | ID=MS.gene37972 |
| chr5.1 | mRNA | 76703868 | 76706031 | 76703868 | ID=MS.gene37972.t1;Parent=MS.gene37972 |
| chr5.1 | exon | 76703868 | 76704189 | 76703868 | ID=MS.gene37972.t1.exon1;Parent=MS.gene37972.t1 |
| chr5.1 | CDS | 76703868 | 76704189 | 76703868 | ID=cds.MS.gene37972.t1;Parent=MS.gene37972.t1 |
| chr5.1 | exon | 76705313 | 76706031 | 76705313 | ID=MS.gene37972.t1.exon2;Parent=MS.gene37972.t1 |
| chr5.1 | CDS | 76705313 | 76706031 | 76705313 | ID=cds.MS.gene37972.t1;Parent=MS.gene37972.t1 |
| Gene Sequence |
| Protein sequence |
