Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38073.t1 | XP_003617979.1 | 98.6 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 3.20E-210 | 740.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38073.t1 | Q9SJ74 | 70.5 | 366 | 106 | 2 | 1 | 365 | 38 | 402 | 2.4e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38073.t1 | G7K4W5 | 98.6 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 2.3e-210 | 740.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38073 | MS.gene042118 | PPI |
| MS.gene38073 | MS.gene95132 | PPI |
| MS.gene38073 | MS.gene96299 | PPI |
| MS.gene38073 | MS.gene012709 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38073.t1 | MTR_5g097620 | 98.649 | 370 | 5 | 0 | 1 | 370 | 73 | 442 | 0.0 | 751 |
| MS.gene38073.t1 | MTR_8g009880 | 85.637 | 369 | 49 | 3 | 1 | 369 | 36 | 400 | 0.0 | 652 |
| MS.gene38073.t1 | MTR_4g133620 | 34.060 | 367 | 219 | 6 | 2 | 360 | 41 | 392 | 9.17e-65 | 211 |
| MS.gene38073.t1 | MTR_2g026080 | 34.146 | 369 | 218 | 9 | 2 | 362 | 45 | 396 | 3.60e-61 | 202 |
| MS.gene38073.t1 | MTR_7g051910 | 30.295 | 373 | 239 | 4 | 1 | 370 | 40 | 394 | 5.30e-59 | 196 |
| MS.gene38073.t1 | MTR_5g093520 | 34.844 | 353 | 199 | 12 | 3 | 342 | 54 | 388 | 2.98e-55 | 187 |
| MS.gene38073.t1 | MTR_3g058510 | 30.508 | 354 | 222 | 8 | 2 | 348 | 42 | 378 | 1.20e-50 | 174 |
| MS.gene38073.t1 | MTR_8g028075 | 30.041 | 243 | 157 | 6 | 102 | 339 | 319 | 553 | 3.36e-29 | 119 |
| MS.gene38073.t1 | MTR_7g117375 | 33.649 | 211 | 130 | 5 | 143 | 351 | 184 | 386 | 5.00e-21 | 94.0 |
| MS.gene38073.t1 | MTR_2g018960 | 28.859 | 149 | 96 | 3 | 168 | 310 | 663 | 807 | 4.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38073.t1 | AT2G04850 | 70.492 | 366 | 106 | 2 | 1 | 365 | 38 | 402 | 0.0 | 534 |
| MS.gene38073.t1 | AT3G25290 | 32.500 | 360 | 222 | 6 | 1 | 352 | 43 | 389 | 4.08e-68 | 220 |
| MS.gene38073.t1 | AT3G25290 | 32.500 | 360 | 222 | 6 | 1 | 352 | 43 | 389 | 4.08e-68 | 220 |
| MS.gene38073.t1 | AT5G47530 | 33.243 | 370 | 221 | 7 | 2 | 367 | 43 | 390 | 8.64e-68 | 219 |
| MS.gene38073.t1 | AT4G12980 | 32.687 | 361 | 220 | 6 | 1 | 352 | 44 | 390 | 1.20e-66 | 216 |
| MS.gene38073.t1 | AT4G17280 | 33.056 | 360 | 218 | 7 | 2 | 355 | 50 | 392 | 2.90e-59 | 197 |
| MS.gene38073.t1 | AT5G35735 | 33.702 | 362 | 212 | 11 | 12 | 369 | 55 | 392 | 4.65e-59 | 196 |
| MS.gene38073.t1 | AT3G59070 | 31.148 | 366 | 219 | 11 | 21 | 370 | 72 | 420 | 2.22e-48 | 170 |
| MS.gene38073.t1 | AT3G07570 | 28.710 | 310 | 198 | 10 | 33 | 340 | 79 | 367 | 7.81e-31 | 120 |
| MS.gene38073.t1 | AT3G61750 | 29.836 | 305 | 191 | 10 | 33 | 336 | 11 | 293 | 4.82e-29 | 115 |
| MS.gene38073.t1 | AT3G61750 | 29.836 | 305 | 191 | 10 | 33 | 336 | 88 | 370 | 2.60e-28 | 114 |
| MS.gene38073.t1 | AT5G48750 | 28.899 | 218 | 138 | 4 | 1 | 216 | 49 | 251 | 2.54e-25 | 103 |
| MS.gene38073.t1 | AT5G54830 | 28.571 | 182 | 109 | 5 | 168 | 343 | 675 | 841 | 3.33e-13 | 71.6 |
Find 106 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACTATTTGTCCTGTATT+TGG | 0.114722 | 5.1:+77958798 | None:intergenic |
| TTAGGGCTTTCTACTCTTAT+TGG | 0.174160 | 5.1:-77958009 | MS.gene38073:CDS |
| ATTCCAAACAAGGTGGATTT+TGG | 0.191207 | 5.1:+77958596 | None:intergenic |
| CAAATGTTTGGTTTCATTCT+TGG | 0.192480 | 5.1:-77958309 | MS.gene38073:CDS |
| CCAAATTGAGTTATTGTTTA+GGG | 0.198532 | 5.1:-77958026 | MS.gene38073:CDS |
| CTAAACTTGTTCGTAGTATT+TGG | 0.209570 | 5.1:+77958156 | None:intergenic |
| CCTTCTGGTTGGGTTGGATT+TGG | 0.240455 | 5.1:-77958879 | MS.gene38073:CDS |
| GGTACTTTCATTTCACCTTC+TGG | 0.252833 | 5.1:-77958894 | MS.gene38073:CDS |
| ATGAGGAAAGAGGGACTTAT+TGG | 0.256520 | 5.1:-77957922 | MS.gene38073:CDS |
| ACCTTAGAACTAATCTTCTT+TGG | 0.258541 | 5.1:-77958915 | MS.gene38073:CDS |
| GGTTACTCTTGTGTGGTTCT+TGG | 0.269844 | 5.1:-77958102 | MS.gene38073:CDS |
| CCCTAAACAATAACTCAATT+TGG | 0.277592 | 5.1:+77958026 | None:intergenic |
| ATTCTTGGAACCATTGGTTT+TGG | 0.279995 | 5.1:-77958294 | MS.gene38073:CDS |
| TATTGGTGTTTCCATTGCTT+TGG | 0.291938 | 5.1:-77957992 | MS.gene38073:CDS |
| TTGCTTTGGAGGTCAATTCT+TGG | 0.293222 | 5.1:-77957978 | MS.gene38073:CDS |
| AGACTTTGGCATTGTTGTTT+AGG | 0.306216 | 5.1:-77958179 | MS.gene38073:CDS |
| AAACCAAAATCCACCTTGTT+TGG | 0.312634 | 5.1:-77958599 | MS.gene38073:CDS |
| GCCAAATTGAGTTATTGTTT+AGG | 0.317349 | 5.1:-77958027 | MS.gene38073:CDS |
| GAACTATTTGTCCTGTATTT+GGG | 0.317546 | 5.1:+77958799 | None:intergenic |
| ACCAAAGAAGATTAGTTCTA+AGG | 0.327439 | 5.1:+77958914 | None:intergenic |
| CAAATACTACGAACAAGTTT+AGG | 0.331418 | 5.1:-77958155 | MS.gene38073:CDS |
| CCTTGGAGCTTTGCAGACTT+TGG | 0.336139 | 5.1:-77958193 | MS.gene38073:CDS |
| TGCTTTGGAGGTCAATTCTT+GGG | 0.347626 | 5.1:-77957977 | MS.gene38073:CDS |
| TTTCATTTCACCTTCTGGTT+GGG | 0.360777 | 5.1:-77958889 | MS.gene38073:CDS |
| CGAACAAGTTTAGGAAGTAT+TGG | 0.369522 | 5.1:-77958146 | MS.gene38073:CDS |
| CACAAGAGTAACCAACAAAA+TGG | 0.369888 | 5.1:+77958112 | None:intergenic |
| ATTTGTCCTGTATTTGGGTC+TGG | 0.375488 | 5.1:+77958804 | None:intergenic |
| TCTTCCTCTGCAGCCATGTA+TGG | 0.375881 | 5.1:-77958693 | MS.gene38073:CDS |
| ATGACACCGGGAGTGGAGTA+TGG | 0.379480 | 5.1:-77958249 | MS.gene38073:CDS |
| CATGCAGGAATACAAATGTT+TGG | 0.389583 | 5.1:-77958321 | MS.gene38073:CDS |
| GGCTTTGTGAATGTGTTTCA+AGG | 0.390916 | 5.1:-77958081 | MS.gene38073:CDS |
| GGTTTCATTCTTGGAACCAT+TGG | 0.393037 | 5.1:-77958300 | MS.gene38073:CDS |
| ATCCACCTTGTTTGGAATAG+AGG | 0.394891 | 5.1:-77958591 | MS.gene38073:CDS |
| TGTTCTAAATGCAGTCTCTT+GGG | 0.395962 | 5.1:-77958424 | MS.gene38073:CDS |
| ATTTCACCTTCTGGTTGGGT+TGG | 0.397941 | 5.1:-77958885 | MS.gene38073:CDS |
| ATTCGACTCGAGTTTGAGTT+TGG | 0.399789 | 5.1:+77958623 | None:intergenic |
| GATAGATCAATTGATGTTGT+TGG | 0.401706 | 5.1:+77958534 | None:intergenic |
| TGGTGTTTCCATTGCTTTGG+AGG | 0.402874 | 5.1:-77957989 | MS.gene38073:CDS |
| AGTTTGGCGTAGATTTGAAT+AGG | 0.405047 | 5.1:+77958639 | None:intergenic |
| AATAGAGGTCTTTATGTTCA+AGG | 0.414486 | 5.1:-77958576 | MS.gene38073:CDS |
| GTGTTCTAAATGCAGTCTCT+TGG | 0.422091 | 5.1:-77958425 | MS.gene38073:CDS |
| CTTTCATTTCACCTTCTGGT+TGG | 0.424491 | 5.1:-77958890 | MS.gene38073:CDS |
| TTTCAAGGGTTTGAAGTGAT+TGG | 0.434245 | 5.1:-77958066 | MS.gene38073:CDS |
| CCTGTCATTTGTGGTGAAGT+AGG | 0.437815 | 5.1:+77958849 | None:intergenic |
| AGCCATGTATGGTGGCAAAA+TGG | 0.449205 | 5.1:-77958682 | MS.gene38073:CDS |
| GAAGAGAAAATGAGGAAAGA+GGG | 0.453995 | 5.1:-77957931 | MS.gene38073:CDS |
| GCATTAGTTCCTGTCATTTG+TGG | 0.456046 | 5.1:+77958840 | None:intergenic |
| CTGTCATTTGTGGTGAAGTA+GGG | 0.474757 | 5.1:+77958850 | None:intergenic |
| AATAGGCGCACCGTTATGAA+TGG | 0.475616 | 5.1:+77958656 | None:intergenic |
| TTGAAGTGATTGGTGCTAGT+AGG | 0.475727 | 5.1:-77958056 | MS.gene38073:CDS |
| ACAATGTTAAGAGTGATTCA+TGG | 0.475734 | 5.1:-77958447 | MS.gene38073:CDS |
| TATGGACTCCACAGGAAGCT+TGG | 0.480300 | 5.1:-77958231 | MS.gene38073:CDS |
| AGGAGGTTGATATTATCAAA+AGG | 0.484868 | 5.1:+77958717 | None:intergenic |
| GGAAGAGAAAATGAGGAAAG+AGG | 0.485997 | 5.1:-77957932 | MS.gene38073:CDS |
| AATTGATGTTGTTGGATGGA+TGG | 0.487039 | 5.1:+77958542 | None:intergenic |
| TTGAGGCTTGTTGTGTTGGA+AGG | 0.492815 | 5.1:+77958967 | None:intergenic |
| AATCTAAGGAAGAGAAAATG+AGG | 0.507309 | 5.1:-77957939 | MS.gene38073:CDS |
| GCATGAGCATAAAACCATGC+AGG | 0.507446 | 5.1:+77958339 | None:intergenic |
| CGGGAAAATGACACCGGGAG+TGG | 0.512531 | 5.1:-77958256 | MS.gene38073:CDS |
| TTGGTATTGGTATTCAACTC+GGG | 0.512706 | 5.1:-77958275 | MS.gene38073:CDS |
| TCATTTCCAGACCCAAATAC+AGG | 0.515763 | 5.1:-77958810 | MS.gene38073:CDS |
| GCTATTGAGGCTTGTTGTGT+TGG | 0.518027 | 5.1:+77958963 | None:intergenic |
| TTGGAACTAGTTCTGACAAA+GGG | 0.523954 | 5.1:-77957903 | MS.gene38073:CDS |
| ACCTGACAAAACATCAAAAG+TGG | 0.524778 | 5.1:+77958503 | None:intergenic |
| GTTCTAAATGCAGTCTCTTG+GGG | 0.536425 | 5.1:-77958423 | MS.gene38073:CDS |
| GATGTTGTTGGATGGATGGT+TGG | 0.537684 | 5.1:+77958546 | None:intergenic |
| GATCAATTGATGTTGTTGGA+TGG | 0.539796 | 5.1:+77958538 | None:intergenic |
| GCTTTGTGAATGTGTTTCAA+GGG | 0.546917 | 5.1:-77958080 | MS.gene38073:CDS |
| ACGTGCTGTTATCGCTCCTG+TGG | 0.548278 | 5.1:+77958389 | None:intergenic |
| ACAGTAGTGTCAAGAATGAA+AGG | 0.550198 | 5.1:+77958771 | None:intergenic |
| TGGAGTCCATACTCCACTCC+CGG | 0.551779 | 5.1:+77958243 | None:intergenic |
| TGGGTCTGGAAATGATATCA+AGG | 0.553986 | 5.1:+77958818 | None:intergenic |
| GTTCTAAGGTGGAGCTGTGA+GGG | 0.559595 | 5.1:+77958928 | None:intergenic |
| CACAACAAGCCTCAATAGCA+TGG | 0.563316 | 5.1:-77958959 | MS.gene38073:CDS |
| TTCAAACATTAGGCCCTGCA+TGG | 0.564434 | 5.1:-77958353 | MS.gene38073:CDS |
| TCCTCTGCAGCCATGTATGG+TGG | 0.565035 | 5.1:-77958690 | MS.gene38073:CDS |
| GTCAGTGTGTTGAGATGTTG+AGG | 0.566616 | 5.1:+77958473 | None:intergenic |
| GCCACCATACATGGCTGCAG+AGG | 0.571339 | 5.1:+77958689 | None:intergenic |
| AGAATTGACCTCCAAAGCAA+TGG | 0.580565 | 5.1:+77957981 | None:intergenic |
| AAAGAAGATTAGTTCTAAGG+TGG | 0.580824 | 5.1:+77958917 | None:intergenic |
| TTTGGTATTGGTATTCAACT+CGG | 0.583436 | 5.1:-77958276 | MS.gene38073:CDS |
| ACATGGCTGCAGAGGAAGAG+AGG | 0.585108 | 5.1:+77958697 | None:intergenic |
| GTGGAAAGTCCATGCTATTG+AGG | 0.587691 | 5.1:+77958950 | None:intergenic |
| AATACCAATACCAAAACCAA+TGG | 0.596565 | 5.1:+77958284 | None:intergenic |
| GAGTGGAGTATGGACTCCAC+AGG | 0.602871 | 5.1:-77958239 | MS.gene38073:CDS |
| CCAAAGTCTGCAAAGCTCCA+AGG | 0.604381 | 5.1:+77958193 | None:intergenic |
| GAATCACTCTTAACATTGTG+AGG | 0.605965 | 5.1:+77958451 | None:intergenic |
| CCGCTATTCCAAGCTTCCTG+TGG | 0.608097 | 5.1:+77958223 | None:intergenic |
| CATGAGCATAAAACCATGCA+GGG | 0.608239 | 5.1:+77958340 | None:intergenic |
| CCACAGGAAGCTTGGAATAG+CGG | 0.609878 | 5.1:-77958223 | MS.gene38073:CDS |
| TCAAAAGGTTGAGAGAGAAG+TGG | 0.614618 | 5.1:+77958732 | None:intergenic |
| AAAATGGCAACCATTCATAA+CGG | 0.616375 | 5.1:-77958666 | MS.gene38073:CDS |
| CCAAATCCAACCCAACCAGA+AGG | 0.618606 | 5.1:+77958879 | None:intergenic |
| CCTACTTCACCACAAATGAC+AGG | 0.618913 | 5.1:-77958849 | MS.gene38073:CDS |
| AGTTCTGACAAAGGGAGTAG+TGG | 0.620980 | 5.1:-77957895 | MS.gene38073:CDS |
| CATTGTTGCTCTCTCAAATG+TGG | 0.625854 | 5.1:+77957869 | None:intergenic |
| TCAACTCGGGAAAATGACAC+CGG | 0.627618 | 5.1:-77958262 | MS.gene38073:CDS |
| CTAAGGTGGAGCTGTGAGGG+TGG | 0.630452 | 5.1:+77958931 | None:intergenic |
| AGTTCTAAGGTGGAGCTGTG+AGG | 0.642313 | 5.1:+77958927 | None:intergenic |
| CAACTCGGGAAAATGACACC+GGG | 0.644833 | 5.1:-77958261 | MS.gene38073:CDS |
| ATTGGAACTAGTTCTGACAA+AGG | 0.648605 | 5.1:-77957904 | MS.gene38073:CDS |
| CGTGCTGTTATCGCTCCTGT+GGG | 0.651229 | 5.1:+77958390 | None:intergenic |
| AAAGACCTCTATTCCAAACA+AGG | 0.655433 | 5.1:+77958586 | None:intergenic |
| GACCTCTATTCCAAACAAGG+TGG | 0.670337 | 5.1:+77958589 | None:intergenic |
| AAGAGTAACCAACAAAATGG+TGG | 0.683274 | 5.1:+77958115 | None:intergenic |
| TGGCTGCAGAGGAAGAGAGG+AGG | 0.691481 | 5.1:+77958700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTAGGAAATCTA+AGG | - | chr5.1:77958901-77958920 | MS.gene38073:CDS | 20.0% |
| ! | CCAAATTGAGTTATTGTTTA+GGG | - | chr5.1:77958828-77958847 | MS.gene38073:CDS | 25.0% |
| !!! | ATTCTTGGGTTATTTTTTGT+AGG | - | chr5.1:77958891-77958910 | MS.gene38073:CDS | 25.0% |
| AAAATGGCAACCATTCATAA+CGG | - | chr5.1:77958188-77958207 | MS.gene38073:CDS | 30.0% | |
| AATACCAATACCAAAACCAA+TGG | + | chr5.1:77958573-77958592 | None:intergenic | 30.0% | |
| AATAGAGGTCTTTATGTTCA+AGG | - | chr5.1:77958278-77958297 | MS.gene38073:CDS | 30.0% | |
| AATCTAAGGAAGAGAAAATG+AGG | - | chr5.1:77958915-77958934 | MS.gene38073:CDS | 30.0% | |
| ACAATGTTAAGAGTGATTCA+TGG | - | chr5.1:77958407-77958426 | MS.gene38073:CDS | 30.0% | |
| ACCTTAGAACTAATCTTCTT+TGG | - | chr5.1:77957939-77957958 | MS.gene38073:CDS | 30.0% | |
| AGAACTATTTGTCCTGTATT+TGG | + | chr5.1:77958059-77958078 | None:intergenic | 30.0% | |
| CAAATACTACGAACAAGTTT+AGG | - | chr5.1:77958699-77958718 | MS.gene38073:CDS | 30.0% | |
| CCCTAAACAATAACTCAATT+TGG | + | chr5.1:77958831-77958850 | None:intergenic | 30.0% | |
| GAACTATTTGTCCTGTATTT+GGG | + | chr5.1:77958058-77958077 | None:intergenic | 30.0% | |
| GATAGATCAATTGATGTTGT+TGG | + | chr5.1:77958323-77958342 | None:intergenic | 30.0% | |
| GCCAAATTGAGTTATTGTTT+AGG | - | chr5.1:77958827-77958846 | MS.gene38073:CDS | 30.0% | |
| ! | AAATCTTACCACCATTTTGT+TGG | - | chr5.1:77958731-77958750 | MS.gene38073:CDS | 30.0% |
| ! | CAAATGTTTGGTTTCATTCT+TGG | - | chr5.1:77958545-77958564 | MS.gene38073:CDS | 30.0% |
| ! | CTAAACTTGTTCGTAGTATT+TGG | + | chr5.1:77958701-77958720 | None:intergenic | 30.0% |
| ! | CTTCGACATTTTCAAACATT+AGG | - | chr5.1:77958491-77958510 | MS.gene38073:CDS | 30.0% |
| !! | AAAGAAGATTAGTTCTAAGG+TGG | + | chr5.1:77957940-77957959 | None:intergenic | 30.0% |
| !! | ACCAAAGAAGATTAGTTCTA+AGG | + | chr5.1:77957943-77957962 | None:intergenic | 30.0% |
| !! | AGGAGGTTGATATTATCAAA+AGG | + | chr5.1:77958140-77958159 | None:intergenic | 30.0% |
| !! | TTTGGTATTGGTATTCAACT+CGG | - | chr5.1:77958578-77958597 | MS.gene38073:CDS | 30.0% |
| AAACCAAAATCCACCTTGTT+TGG | - | chr5.1:77958255-77958274 | MS.gene38073:CDS | 35.0% | |
| AAAGACCTCTATTCCAAACA+AGG | + | chr5.1:77958271-77958290 | None:intergenic | 35.0% | |
| AAGAGTAACCAACAAAATGG+TGG | + | chr5.1:77958742-77958761 | None:intergenic | 35.0% | |
| AATTGATGTTGTTGGATGGA+TGG | + | chr5.1:77958315-77958334 | None:intergenic | 35.0% | |
| ACAGTAGTGTCAAGAATGAA+AGG | + | chr5.1:77958086-77958105 | None:intergenic | 35.0% | |
| ACCTGACAAAACATCAAAAG+TGG | + | chr5.1:77958354-77958373 | None:intergenic | 35.0% | |
| AGTTTGGCGTAGATTTGAAT+AGG | + | chr5.1:77958218-77958237 | None:intergenic | 35.0% | |
| CACAAGAGTAACCAACAAAA+TGG | + | chr5.1:77958745-77958764 | None:intergenic | 35.0% | |
| CATGCAGGAATACAAATGTT+TGG | - | chr5.1:77958533-77958552 | MS.gene38073:CDS | 35.0% | |
| GAAGAGAAAATGAGGAAAGA+GGG | - | chr5.1:77958923-77958942 | MS.gene38073:CDS | 35.0% | |
| GAATCACTCTTAACATTGTG+AGG | + | chr5.1:77958406-77958425 | None:intergenic | 35.0% | |
| GATCAATTGATGTTGTTGGA+TGG | + | chr5.1:77958319-77958338 | None:intergenic | 35.0% | |
| GCTTTGTGAATGTGTTTCAA+GGG | - | chr5.1:77958774-77958793 | MS.gene38073:CDS | 35.0% | |
| TTAGGGCTTTCTACTCTTAT+TGG | - | chr5.1:77958845-77958864 | MS.gene38073:CDS | 35.0% | |
| ! | CGAACAAGTTTAGGAAGTAT+TGG | - | chr5.1:77958708-77958727 | MS.gene38073:CDS | 35.0% |
| ! | TATTGGTGTTTCCATTGCTT+TGG | - | chr5.1:77958862-77958881 | MS.gene38073:CDS | 35.0% |
| ! | TGTTCTAAATGCAGTCTCTT+GGG | - | chr5.1:77958430-77958449 | MS.gene38073:CDS | 35.0% |
| ! | TTTCAAGGGTTTGAAGTGAT+TGG | - | chr5.1:77958788-77958807 | MS.gene38073:CDS | 35.0% |
| ! | TTTCATTTCACCTTCTGGTT+GGG | - | chr5.1:77957965-77957984 | MS.gene38073:CDS | 35.0% |
| !! | AGACTTTGGCATTGTTGTTT+AGG | - | chr5.1:77958675-77958694 | MS.gene38073:CDS | 35.0% |
| !! | ATTCCAAACAAGGTGGATTT+TGG | + | chr5.1:77958261-77958280 | None:intergenic | 35.0% |
| !! | ATTGGAACTAGTTCTGACAA+AGG | - | chr5.1:77958950-77958969 | MS.gene38073:CDS | 35.0% |
| !! | TTGGAACTAGTTCTGACAAA+GGG | - | chr5.1:77958951-77958970 | MS.gene38073:CDS | 35.0% |
| !! | TTGGTATTGGTATTCAACTC+GGG | - | chr5.1:77958579-77958598 | MS.gene38073:CDS | 35.0% |
| !! | TTTTGTTGGTTACTCTTGTG+TGG | - | chr5.1:77958745-77958764 | MS.gene38073:CDS | 35.0% |
| !!! | ATTCTTGGAACCATTGGTTT+TGG | - | chr5.1:77958560-77958579 | MS.gene38073:CDS | 35.0% |
| AGAATTGACCTCCAAAGCAA+TGG | + | chr5.1:77958876-77958895 | None:intergenic | 40.0% | |
| ATGAGGAAAGAGGGACTTAT+TGG | - | chr5.1:77958932-77958951 | MS.gene38073:CDS | 40.0% | |
| ATTTGTCCTGTATTTGGGTC+TGG | + | chr5.1:77958053-77958072 | None:intergenic | 40.0% | |
| CATGAGCATAAAACCATGCA+GGG | + | chr5.1:77958517-77958536 | None:intergenic | 40.0% | |
| CTTTCATTTCACCTTCTGGT+TGG | - | chr5.1:77957964-77957983 | MS.gene38073:CDS | 40.0% | |
| GGAAGAGAAAATGAGGAAAG+AGG | - | chr5.1:77958922-77958941 | MS.gene38073:CDS | 40.0% | |
| GGTACTTTCATTTCACCTTC+TGG | - | chr5.1:77957960-77957979 | MS.gene38073:CDS | 40.0% | |
| GGTTTCATTCTTGGAACCAT+TGG | - | chr5.1:77958554-77958573 | MS.gene38073:CDS | 40.0% | |
| TCAAAAGGTTGAGAGAGAAG+TGG | + | chr5.1:77958125-77958144 | None:intergenic | 40.0% | |
| TCATTTCCAGACCCAAATAC+AGG | - | chr5.1:77958044-77958063 | MS.gene38073:CDS | 40.0% | |
| TGGGTCTGGAAATGATATCA+AGG | + | chr5.1:77958039-77958058 | None:intergenic | 40.0% | |
| ! | ATCCACCTTGTTTGGAATAG+AGG | - | chr5.1:77958263-77958282 | MS.gene38073:CDS | 40.0% |
| ! | ATTCGACTCGAGTTTGAGTT+TGG | + | chr5.1:77958234-77958253 | None:intergenic | 40.0% |
| ! | CTGTCATTTGTGGTGAAGTA+GGG | + | chr5.1:77958007-77958026 | None:intergenic | 40.0% |
| ! | GAGAGAGAAGTGGTGATTTT+TGG | + | chr5.1:77958115-77958134 | None:intergenic | 40.0% |
| ! | GCATTAGTTCCTGTCATTTG+TGG | + | chr5.1:77958017-77958036 | None:intergenic | 40.0% |
| ! | GGCTTTGTGAATGTGTTTCA+AGG | - | chr5.1:77958773-77958792 | MS.gene38073:CDS | 40.0% |
| ! | GTGTTCTAAATGCAGTCTCT+TGG | - | chr5.1:77958429-77958448 | MS.gene38073:CDS | 40.0% |
| ! | GTTCTAAATGCAGTCTCTTG+GGG | - | chr5.1:77958431-77958450 | MS.gene38073:CDS | 40.0% |
| !! | TGCTTTGGAGGTCAATTCTT+GGG | - | chr5.1:77958877-77958896 | MS.gene38073:CDS | 40.0% |
| !! | TTGAAGTGATTGGTGCTAGT+AGG | - | chr5.1:77958798-77958817 | MS.gene38073:CDS | 40.0% |
| !! | TTGCTTTGGAGGTCAATTCT+TGG | - | chr5.1:77958876-77958895 | MS.gene38073:CDS | 40.0% |
| !!! | GCCACTTTTGATGTTTTGTC+AGG | - | chr5.1:77958350-77958369 | MS.gene38073:CDS | 40.0% |
| !!! | GGAACCATTGGTTTTGGTAT+TGG | - | chr5.1:77958566-77958585 | MS.gene38073:CDS | 40.0% |
| AATAGGCGCACCGTTATGAA+TGG | + | chr5.1:77958201-77958220 | None:intergenic | 45.0% | |
| AGCCATGTATGGTGGCAAAA+TGG | - | chr5.1:77958172-77958191 | MS.gene38073:CDS | 45.0% | |
| CACAACAAGCCTCAATAGCA+TGG | - | chr5.1:77957895-77957914 | MS.gene38073:CDS | 45.0% | |
| CCTACTTCACCACAAATGAC+AGG | - | chr5.1:77958005-77958024 | MS.gene38073:CDS | 45.0% | |
| GACCTCTATTCCAAACAAGG+TGG | + | chr5.1:77958268-77958287 | None:intergenic | 45.0% | |
| GATGTTGTTGGATGGATGGT+TGG | + | chr5.1:77958311-77958330 | None:intergenic | 45.0% | |
| GCATGAGCATAAAACCATGC+AGG | + | chr5.1:77958518-77958537 | None:intergenic | 45.0% | |
| GGTTACTCTTGTGTGGTTCT+TGG | - | chr5.1:77958752-77958771 | MS.gene38073:CDS | 45.0% | |
| GTCAGTGTGTTGAGATGTTG+AGG | + | chr5.1:77958384-77958403 | None:intergenic | 45.0% | |
| GTGGAAAGTCCATGCTATTG+AGG | + | chr5.1:77957907-77957926 | None:intergenic | 45.0% | |
| TCAACTCGGGAAAATGACAC+CGG | - | chr5.1:77958592-77958611 | MS.gene38073:CDS | 45.0% | |
| TGGTGTTTCCATTGCTTTGG+AGG | - | chr5.1:77958865-77958884 | MS.gene38073:CDS | 45.0% | |
| TTCAAACATTAGGCCCTGCA+TGG | - | chr5.1:77958501-77958520 | MS.gene38073:CDS | 45.0% | |
| ! | AGTTCTGACAAAGGGAGTAG+TGG | - | chr5.1:77958959-77958978 | MS.gene38073:CDS | 45.0% |
| ! | ATTTCACCTTCTGGTTGGGT+TGG | - | chr5.1:77957969-77957988 | MS.gene38073:CDS | 45.0% |
| ! | CCTGTCATTTGTGGTGAAGT+AGG | + | chr5.1:77958008-77958027 | None:intergenic | 45.0% |
| ! | TGGGGTATACTTTTACCCAC+AGG | - | chr5.1:77958449-77958468 | MS.gene38073:CDS | 45.0% |
| !! | GCTATTGAGGCTTGTTGTGT+TGG | + | chr5.1:77957894-77957913 | None:intergenic | 45.0% |
| !! | TTGAGGCTTGTTGTGTTGGA+AGG | + | chr5.1:77957890-77957909 | None:intergenic | 45.0% |
| !!! | GCATGGTTTTATGCTCATGC+AGG | - | chr5.1:77958518-77958537 | MS.gene38073:CDS | 45.0% |
| !!! | TGCCATTTTGCCACCATACA+TGG | + | chr5.1:77958177-77958196 | None:intergenic | 45.0% |
| CAACTCGGGAAAATGACACC+GGG | - | chr5.1:77958593-77958612 | MS.gene38073:CDS | 50.0% | |
| CCAAAGTCTGCAAAGCTCCA+AGG | + | chr5.1:77958664-77958683 | None:intergenic | 50.0% | |
| CCAAATCCAACCCAACCAGA+AGG | + | chr5.1:77957978-77957997 | None:intergenic | 50.0% | |
| CCACAGGAAGCTTGGAATAG+CGG | - | chr5.1:77958631-77958650 | MS.gene38073:CDS | 50.0% | |
| CCTTGGAGCTTTGCAGACTT+TGG | - | chr5.1:77958661-77958680 | MS.gene38073:CDS | 50.0% | |
| TATGGACTCCACAGGAAGCT+TGG | - | chr5.1:77958623-77958642 | MS.gene38073:CDS | 50.0% | |
| TCTTCCTCTGCAGCCATGTA+TGG | - | chr5.1:77958161-77958180 | MS.gene38073:CDS | 50.0% | |
| ! | GGAATAGCGGTGTTTTGCCT+TGG | - | chr5.1:77958644-77958663 | MS.gene38073:CDS | 50.0% |
| !! | AGTTCTAAGGTGGAGCTGTG+AGG | + | chr5.1:77957930-77957949 | None:intergenic | 50.0% |
| !! | CCTTCTGGTTGGGTTGGATT+TGG | - | chr5.1:77957975-77957994 | MS.gene38073:CDS | 50.0% |
| !! | GTTCTAAGGTGGAGCTGTGA+GGG | + | chr5.1:77957929-77957948 | None:intergenic | 50.0% |
| ACATGGCTGCAGAGGAAGAG+AGG | + | chr5.1:77958160-77958179 | None:intergenic | 55.0% | |
| ATGACACCGGGAGTGGAGTA+TGG | - | chr5.1:77958605-77958624 | MS.gene38073:CDS | 55.0% | |
| CCGCTATTCCAAGCTTCCTG+TGG | + | chr5.1:77958634-77958653 | None:intergenic | 55.0% | |
| GAGTGGAGTATGGACTCCAC+AGG | - | chr5.1:77958615-77958634 | MS.gene38073:CDS | 55.0% | |
| TCCTCTGCAGCCATGTATGG+TGG | - | chr5.1:77958164-77958183 | MS.gene38073:CDS | 55.0% | |
| TGGAGTCCATACTCCACTCC+CGG | + | chr5.1:77958614-77958633 | None:intergenic | 55.0% | |
| ! | ACGTGCTGTTATCGCTCCTG+TGG | + | chr5.1:77958468-77958487 | None:intergenic | 55.0% |
| ! | CGTGCTGTTATCGCTCCTGT+GGG | + | chr5.1:77958467-77958486 | None:intergenic | 55.0% |
| CGGGAAAATGACACCGGGAG+TGG | - | chr5.1:77958598-77958617 | MS.gene38073:CDS | 60.0% | |
| CTAAGGTGGAGCTGTGAGGG+TGG | + | chr5.1:77957926-77957945 | None:intergenic | 60.0% | |
| GCCACCATACATGGCTGCAG+AGG | + | chr5.1:77958168-77958187 | None:intergenic | 60.0% | |
| TGGCTGCAGAGGAAGAGAGG+AGG | + | chr5.1:77958157-77958176 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 77957882 | 77958994 | 77957882 | ID=MS.gene38073 |
| chr5.1 | mRNA | 77957882 | 77958994 | 77957882 | ID=MS.gene38073.t1;Parent=MS.gene38073 |
| chr5.1 | exon | 77957882 | 77958994 | 77957882 | ID=MS.gene38073.t1.exon1;Parent=MS.gene38073.t1 |
| chr5.1 | CDS | 77957882 | 77958994 | 77957882 | ID=cds.MS.gene38073.t1;Parent=MS.gene38073.t1 |
| Gene Sequence |
| Protein sequence |
