Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38115.t1 | XP_003618077.2 | 99.4 | 656 | 4 | 0 | 1 | 656 | 10 | 665 | 0.00E+00 | 1304.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38115.t1 | F4JRE0 | 82.7 | 646 | 111 | 1 | 11 | 656 | 8 | 652 | 0.0e+00 | 1076.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38115.t1 | G7K0Q1 | 99.4 | 656 | 4 | 0 | 1 | 656 | 10 | 665 | 0.0e+00 | 1304.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050818 | MS.gene38115 | 0.821406 | 4.11E-53 | -1.69E-46 |
| MS.gene050894 | MS.gene38115 | 0.801785 | 7.64E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene38115 | 0.823648 | 1.24E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene38115 | -0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene056266 | MS.gene38115 | -0.810932 | 9.02E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene38115 | 0.802103 | 6.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38115.t1 | MTR_5g098730 | 99.390 | 656 | 4 | 0 | 1 | 656 | 10 | 665 | 0.0 | 1337 |
| MS.gene38115.t1 | MTR_3g082140 | 88.262 | 656 | 75 | 1 | 1 | 656 | 6 | 659 | 0.0 | 1180 |
| MS.gene38115.t1 | MTR_0204s0010 | 73.942 | 449 | 112 | 4 | 211 | 656 | 2 | 448 | 0.0 | 682 |
| MS.gene38115.t1 | MTR_8g016270 | 44.065 | 674 | 318 | 15 | 3 | 656 | 14 | 648 | 0.0 | 535 |
| MS.gene38115.t1 | MTR_1g014080 | 44.985 | 658 | 304 | 15 | 19 | 656 | 18 | 637 | 0.0 | 532 |
| MS.gene38115.t1 | MTR_3g105950 | 44.410 | 653 | 305 | 14 | 24 | 656 | 22 | 636 | 4.43e-180 | 526 |
| MS.gene38115.t1 | MTR_5g077170 | 26.484 | 657 | 395 | 15 | 10 | 656 | 13 | 591 | 4.83e-76 | 254 |
| MS.gene38115.t1 | MTR_6g074910 | 26.941 | 631 | 382 | 16 | 35 | 656 | 28 | 588 | 4.08e-75 | 252 |
| MS.gene38115.t1 | MTR_8g088730 | 30.551 | 635 | 358 | 18 | 33 | 656 | 27 | 589 | 1.14e-71 | 243 |
| MS.gene38115.t1 | MTR_2g006300 | 30.332 | 633 | 360 | 17 | 33 | 656 | 23 | 583 | 6.24e-67 | 230 |
| MS.gene38115.t1 | MTR_4g053270 | 26.540 | 633 | 380 | 15 | 33 | 654 | 29 | 587 | 7.66e-57 | 202 |
| MS.gene38115.t1 | MTR_4g116770 | 51.832 | 191 | 87 | 4 | 4 | 191 | 2 | 190 | 1.93e-56 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38115.t1 | AT4G12650 | 85.174 | 634 | 94 | 0 | 23 | 656 | 19 | 652 | 0.0 | 1095 |
| MS.gene38115.t1 | AT5G35160 | 67.572 | 663 | 203 | 9 | 1 | 656 | 1 | 658 | 0.0 | 872 |
| MS.gene38115.t1 | AT5G35160 | 67.572 | 663 | 203 | 9 | 1 | 656 | 1 | 658 | 0.0 | 872 |
| MS.gene38115.t1 | AT5G35160 | 67.572 | 663 | 203 | 9 | 1 | 656 | 1 | 658 | 0.0 | 872 |
| MS.gene38115.t1 | AT5G35160 | 64.006 | 664 | 197 | 10 | 1 | 656 | 1 | 630 | 0.0 | 810 |
| MS.gene38115.t1 | AT3G13772 | 43.951 | 653 | 310 | 14 | 23 | 656 | 26 | 641 | 0.0 | 530 |
| MS.gene38115.t1 | AT5G10840 | 43.769 | 658 | 313 | 14 | 19 | 656 | 28 | 648 | 3.01e-178 | 521 |
| MS.gene38115.t1 | AT1G55130 | 43.609 | 665 | 317 | 14 | 12 | 656 | 11 | 637 | 1.29e-177 | 520 |
| MS.gene38115.t1 | AT5G25100 | 43.544 | 666 | 317 | 15 | 13 | 656 | 16 | 644 | 2.78e-177 | 519 |
| MS.gene38115.t1 | AT2G24170 | 43.673 | 648 | 319 | 13 | 23 | 656 | 22 | 637 | 1.43e-176 | 517 |
| MS.gene38115.t1 | AT5G25100 | 43.239 | 673 | 316 | 16 | 13 | 656 | 16 | 651 | 1.58e-174 | 512 |
| MS.gene38115.t1 | AT2G24170 | 41.425 | 449 | 222 | 10 | 23 | 460 | 22 | 440 | 1.19e-109 | 338 |
| MS.gene38115.t1 | AT5G37310 | 27.656 | 640 | 371 | 16 | 33 | 656 | 30 | 593 | 5.59e-74 | 249 |
| MS.gene38115.t1 | AT5G37310 | 27.656 | 640 | 371 | 16 | 33 | 656 | 30 | 593 | 5.59e-74 | 249 |
| MS.gene38115.t1 | AT2G01970 | 26.562 | 640 | 378 | 17 | 33 | 656 | 29 | 592 | 3.89e-72 | 244 |
| MS.gene38115.t1 | AT1G14670 | 27.023 | 655 | 397 | 17 | 12 | 656 | 9 | 592 | 9.48e-71 | 241 |
| MS.gene38115.t1 | AT1G08350 | 28.100 | 637 | 378 | 17 | 29 | 656 | 24 | 589 | 1.51e-68 | 234 |
| MS.gene38115.t1 | AT1G08350 | 28.100 | 637 | 378 | 17 | 29 | 656 | 24 | 589 | 1.51e-68 | 234 |
| MS.gene38115.t1 | AT1G10950 | 29.495 | 634 | 364 | 18 | 33 | 656 | 29 | 589 | 5.72e-63 | 219 |
| MS.gene38115.t1 | AT1G08350 | 27.431 | 576 | 341 | 14 | 89 | 656 | 2 | 508 | 1.08e-58 | 206 |
| MS.gene38115.t1 | AT1G08350 | 27.797 | 590 | 336 | 18 | 29 | 609 | 24 | 532 | 3.81e-57 | 202 |
Find 163 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTAACTTTGGCATAAAT+TGG | 0.170084 | 5.1:+79523924 | None:intergenic |
| TCTTTATCCTTTCTAGTATC+TGG | 0.190114 | 5.1:-79522447 | MS.gene38115:CDS |
| ATGAGATTTGCGAATCAAAA+TGG | 0.196234 | 5.1:-79523630 | MS.gene38115:CDS |
| CAGATGAATGAGGAGCTTTC+TGG | 0.219123 | 5.1:-79523048 | MS.gene38115:CDS |
| TTGTTGTGGGTGATGTATTT+AGG | 0.236736 | 5.1:-79523017 | MS.gene38115:CDS |
| TGAGAAAATCTTCGATCTAT+TGG | 0.244639 | 5.1:-79524040 | MS.gene38115:CDS |
| TCATCTTAAGTTTACGGTTT+TGG | 0.248432 | 5.1:-79523535 | MS.gene38115:CDS |
| ATCCTCTCTTGCTCTCTTAT+CGG | 0.252316 | 5.1:+79523291 | None:intergenic |
| GTCGAAAACCAAGTAGTTAA+TGG | 0.264525 | 5.1:+79522246 | None:intergenic |
| CCATCATGGCTTCTAGTTCT+TGG | 0.272792 | 5.1:-79522511 | MS.gene38115:CDS |
| GGAGATGGGGTTCAGATTCT+TGG | 0.298792 | 5.1:-79522958 | MS.gene38115:CDS |
| GGAAATGATGTTGAGATTAT+TGG | 0.300169 | 5.1:-79523498 | MS.gene38115:CDS |
| GAATCTCGGTGAGCTTCTTA+TGG | 0.301790 | 5.1:-79523814 | MS.gene38115:CDS |
| TATTAATCATCTTAAGTTTA+CGG | 0.306164 | 5.1:-79523541 | MS.gene38115:CDS |
| CAGTGGACGGGGTTTCCTAT+TGG | 0.310268 | 5.1:-79523597 | MS.gene38115:CDS |
| TACAATTGTGTTTGCAGCCT+TGG | 0.312124 | 5.1:-79522923 | MS.gene38115:CDS |
| TCATCAGTAAAGATAGATTA+AGG | 0.317109 | 5.1:-79522091 | None:intergenic |
| TCCCGAGGAATGCTGTTAAC+AGG | 0.329368 | 5.1:-79522883 | MS.gene38115:CDS |
| GAGAACCCGCGATTTGTATC+AGG | 0.332494 | 5.1:-79523682 | MS.gene38115:CDS |
| AGTGGACGGGGTTTCCTATT+GGG | 0.334319 | 5.1:-79523596 | MS.gene38115:CDS |
| CAGGAATTTCTCTTGGAATC+TGG | 0.335126 | 5.1:+79522545 | None:intergenic |
| GGTGCTGGAACTCTTCCATT+TGG | 0.344229 | 5.1:-79522490 | MS.gene38115:CDS |
| TGATTCGCAAATCTCATAAC+AGG | 0.346573 | 5.1:+79523636 | None:intergenic |
| TGTTGTGGGTGATGTATTTA+GGG | 0.348066 | 5.1:-79523016 | MS.gene38115:CDS |
| TCCTTTCTAGTATCTGGCTT+GGG | 0.354982 | 5.1:-79522441 | MS.gene38115:CDS |
| AAGGGTGGAGATCGATTTCC+TGG | 0.369251 | 5.1:-79522777 | MS.gene38115:CDS |
| AATCTGGATTTGAAATTGTT+GGG | 0.374090 | 5.1:-79523425 | MS.gene38115:CDS |
| CCGCCGAGAGGCTGACAATA+AGG | 0.378086 | 5.1:+79523855 | None:intergenic |
| TGGTACTGGGGAAGAGGGTA+TGG | 0.378199 | 5.1:-79523478 | MS.gene38115:CDS |
| ATTTGAAGATGGAGGGTTCC+CGG | 0.379750 | 5.1:-79523203 | MS.gene38115:CDS |
| CAATTTGAAATACAAGGAAA+TGG | 0.384715 | 5.1:+79522663 | None:intergenic |
| TTGATACTTATCCAACTCAT+TGG | 0.385138 | 5.1:+79523314 | None:intergenic |
| GAATCTGGATTTGAAATTGT+TGG | 0.386478 | 5.1:-79523426 | MS.gene38115:CDS |
| TCTGGTTGGAAGCTTGTTGT+GGG | 0.387532 | 5.1:-79523030 | MS.gene38115:CDS |
| CTTGGCAAGGTATGAGGAAT+TGG | 0.389072 | 5.1:-79523088 | MS.gene38115:CDS |
| TAACCTCATGCTCATTCAAC+GGG | 0.389295 | 5.1:+79523718 | None:intergenic |
| TGTAACTTCGTCATGACTTC+CGG | 0.397781 | 5.1:+79523369 | None:intergenic |
| CTCTGTGTGATGGTTGGAGA+TGG | 0.400086 | 5.1:-79522973 | MS.gene38115:CDS |
| ACTGATAAGAAGAAGGAATC+TGG | 0.403702 | 5.1:-79523441 | MS.gene38115:CDS |
| TGAGATTTGCGAATCAAAAT+GGG | 0.409093 | 5.1:-79523629 | MS.gene38115:CDS |
| ATCCTTTCTAGTATCTGGCT+TGG | 0.410940 | 5.1:-79522442 | MS.gene38115:CDS |
| TAAAGAAAAGCTCTATGAAA+AGG | 0.413314 | 5.1:+79522464 | None:intergenic |
| ACAATTGTGTTTGCAGCCTT+GGG | 0.416029 | 5.1:-79522922 | MS.gene38115:CDS |
| TTCATTGACTTCTATTGAAA+CGG | 0.416268 | 5.1:-79523904 | MS.gene38115:CDS |
| TTGCGTGCAGGAATTTCTCT+TGG | 0.422366 | 5.1:+79522538 | None:intergenic |
| ATTGCAATCATGCTTTCAAC+TGG | 0.422930 | 5.1:-79522160 | MS.gene38115:CDS |
| GTTCAGATTCTTGGAATGGC+TGG | 0.423570 | 5.1:-79522949 | MS.gene38115:CDS |
| TATGTATGCATATAACTTCC+AGG | 0.425643 | 5.1:+79523960 | None:intergenic |
| GTCTCTGCTATACTTTATAT+CGG | 0.428279 | 5.1:-79522202 | MS.gene38115:CDS |
| TCTGTGTGATGGTTGGAGAT+GGG | 0.433622 | 5.1:-79522972 | MS.gene38115:CDS |
| TGGCTTCTAGTTCTTGGTGC+TGG | 0.436923 | 5.1:-79522505 | MS.gene38115:CDS |
| TTCTGGTTGGAAGCTTGTTG+TGG | 0.438619 | 5.1:-79523031 | MS.gene38115:CDS |
| TTTGTACTCCATTAACTACT+TGG | 0.440616 | 5.1:-79522254 | MS.gene38115:CDS |
| TATAAGATGGCCGTCTCGTT+GGG | 0.443270 | 5.1:-79523232 | MS.gene38115:CDS |
| TCAGTGCCACTCACTCTCAT+TGG | 0.446862 | 5.1:-79522619 | MS.gene38115:CDS |
| TGCATCTCTGTGTCGAAGAT+TGG | 0.452228 | 5.1:-79522330 | MS.gene38115:CDS |
| AAGAAGCTCACCGAGATTCT+CGG | 0.452672 | 5.1:+79523818 | None:intergenic |
| TTGGGATGCTTATTTGAAGA+TGG | 0.454987 | 5.1:-79523214 | MS.gene38115:CDS |
| GATATGTAAGTGTACGTCTC+TGG | 0.457354 | 5.1:-79522822 | MS.gene38115:CDS |
| AGAAGTCAATGAATTAACTT+TGG | 0.459396 | 5.1:+79523914 | None:intergenic |
| AATCTCGGTGAGCTTCTTAT+GGG | 0.460004 | 5.1:-79523813 | MS.gene38115:CDS |
| ATGCTTTCAACTGGAACCAT+TGG | 0.461754 | 5.1:-79522151 | MS.gene38115:CDS |
| AACAGCATTCCTCGGGATGC+TGG | 0.461810 | 5.1:+79522889 | None:intergenic |
| GATTATTGGTACTGGGGAAG+AGG | 0.462160 | 5.1:-79523484 | MS.gene38115:CDS |
| GATGTTGAGATTATTGGTAC+TGG | 0.464573 | 5.1:-79523492 | MS.gene38115:CDS |
| TGGAAGGCATTCTATGCATC+AGG | 0.465968 | 5.1:-79522298 | MS.gene38115:CDS |
| GGAAGACTATAGTAACTAAA+GGG | 0.469445 | 5.1:+79523876 | None:intergenic |
| TCAGTAGGCGTATACCCAAT+AGG | 0.476862 | 5.1:+79523582 | None:intergenic |
| AGGAAGACTATAGTAACTAA+AGG | 0.478517 | 5.1:+79523875 | None:intergenic |
| TGATACTTATCCAACTCATT+GGG | 0.478685 | 5.1:+79523315 | None:intergenic |
| CTTCCTTATTGTCAGCCTCT+CGG | 0.481763 | 5.1:-79523858 | MS.gene38115:CDS |
| AAGGGACTTGGCAAGGTATG+AGG | 0.485039 | 5.1:-79523094 | MS.gene38115:CDS |
| TCGAAGATTGGCGGTGGTGG+TGG | 0.485493 | 5.1:-79522318 | MS.gene38115:CDS |
| ATTATTGGTACTGGGGAAGA+GGG | 0.490977 | 5.1:-79523483 | MS.gene38115:CDS |
| CCCTGTTAACAGCATTCCTC+GGG | 0.492570 | 5.1:+79522882 | None:intergenic |
| AAAGAAAAGCTCTATGAAAA+GGG | 0.499915 | 5.1:+79522465 | None:intergenic |
| GGATGCTTATTTGAAGATGG+AGG | 0.500264 | 5.1:-79523211 | MS.gene38115:CDS |
| AAGAACTGTGAGAAGGGACT+TGG | 0.501239 | 5.1:-79523106 | MS.gene38115:CDS |
| TTGTAGTGTGAAACGCGATC+CGG | 0.502453 | 5.1:-79523388 | MS.gene38115:CDS |
| TTTGAAGATGGAGGGTTCCC+GGG | 0.503510 | 5.1:-79523202 | MS.gene38115:CDS |
| GTGCCACTCACTCTCATTGG+AGG | 0.504980 | 5.1:-79522616 | MS.gene38115:CDS |
| CTCTGGGGCAGCAACAGTAC+CGG | 0.505465 | 5.1:-79522694 | MS.gene38115:CDS |
| TATATGCATACATATGCAAA+TGG | 0.508385 | 5.1:-79523951 | MS.gene38115:CDS |
| GAGACGTACACTTACATATC+CGG | 0.513809 | 5.1:+79522825 | None:intergenic |
| TCCCTGTTAACAGCATTCCT+CGG | 0.516492 | 5.1:+79522881 | None:intergenic |
| GTGTCGAAGATTGGCGGTGG+TGG | 0.517146 | 5.1:-79522321 | MS.gene38115:CDS |
| CCAAGAACTAGAAGCCATGA+TGG | 0.519150 | 5.1:+79522511 | None:intergenic |
| AGAATCGTAAAAGCAATTCC+AGG | 0.521519 | 5.1:+79522736 | None:intergenic |
| AATTTGAAATACAAGGAAAT+GGG | 0.523138 | 5.1:+79522664 | None:intergenic |
| GGATCGCGTTTCACACTACA+AGG | 0.523658 | 5.1:+79523390 | None:intergenic |
| CTCAAAACTCCTCTGTGTGA+TGG | 0.527049 | 5.1:-79522983 | MS.gene38115:CDS |
| ATATAAGATGGCCGTCTCGT+TGG | 0.527165 | 5.1:-79523233 | MS.gene38115:CDS |
| TTCGACTTGCAGAGTTTGAG+TGG | 0.530410 | 5.1:-79522229 | MS.gene38115:CDS |
| TGCTGAAACTGATAAGAAGA+AGG | 0.530585 | 5.1:-79523448 | MS.gene38115:CDS |
| CATGATGGATATTTGCGTGC+AGG | 0.536991 | 5.1:+79522526 | None:intergenic |
| GGGGTTAAGATTCAGTGGAC+GGG | 0.537971 | 5.1:-79523609 | MS.gene38115:CDS |
| TGGGGTTCAGATTCTTGGAA+TGG | 0.538104 | 5.1:-79522953 | MS.gene38115:CDS |
| AAGAAAAGTGCCGAGAATCT+CGG | 0.541013 | 5.1:-79523828 | MS.gene38115:CDS |
| TTTCTTAAGAACTGTGAGAA+GGG | 0.542988 | 5.1:-79523112 | MS.gene38115:CDS |
| GATAAACTGTCCCAATGAGT+TGG | 0.543082 | 5.1:-79523325 | MS.gene38115:CDS |
| CTCGATTCTAAATTCGCTGA+TGG | 0.543156 | 5.1:-79523169 | MS.gene38115:CDS |
| ACGTCTCTGGAGGACAATCA+AGG | 0.544728 | 5.1:-79522809 | MS.gene38115:CDS |
| TTGTGAAAAGTGATATAAGA+TGG | 0.546784 | 5.1:-79523245 | MS.gene38115:CDS |
| AGATTGGCGGTGGTGGTGGA+AGG | 0.547896 | 5.1:-79522314 | MS.gene38115:CDS |
| ATCTCTGTGTCGAAGATTGG+CGG | 0.548229 | 5.1:-79522327 | MS.gene38115:CDS |
| ACAATCAAGGGAACTTCGGA+AGG | 0.550995 | 5.1:-79522796 | MS.gene38115:CDS |
| CTGTGTGATGGTTGGAGATG+GGG | 0.552904 | 5.1:-79522971 | MS.gene38115:CDS |
| GGTACTGGGGAAGAGGGTAT+GGG | 0.555612 | 5.1:-79523477 | MS.gene38115:CDS |
| ATTGGGTATACGCCTACTGA+TGG | 0.558860 | 5.1:-79523579 | MS.gene38115:CDS |
| TATCGGCTATTCACTGCTCA+TGG | 0.559083 | 5.1:-79522185 | MS.gene38115:CDS |
| AAACTCCTCTGTGTGATGGT+TGG | 0.559307 | 5.1:-79522979 | MS.gene38115:CDS |
| GGAATCTGGTTAGTTCGCAC+AGG | 0.559395 | 5.1:+79522559 | None:intergenic |
| TTTCTAGTATCTGGCTTGGG+AGG | 0.560333 | 5.1:-79522438 | MS.gene38115:CDS |
| TGGAGGGTTCCCGGGTACAT+TGG | 0.561065 | 5.1:-79523194 | MS.gene38115:CDS |
| ATATAAAGTATAGCAGAGAC+AGG | 0.561532 | 5.1:+79522205 | None:intergenic |
| GTTCAAATTAGCAAAAGCAA+TGG | 0.563811 | 5.1:-79523993 | MS.gene38115:CDS |
| ATGTTGAGATTATTGGTACT+GGG | 0.564623 | 5.1:-79523491 | MS.gene38115:CDS |
| GGTGATGTATTTAGGGAACC+TGG | 0.567667 | 5.1:-79523009 | MS.gene38115:CDS |
| TCCCAAGCCAGATACTAGAA+AGG | 0.573945 | 5.1:+79522440 | None:intergenic |
| CATATCCGGAAGCAATTCCC+AGG | 0.575132 | 5.1:+79522839 | None:intergenic |
| GATGCTTATTTGAAGATGGA+GGG | 0.575425 | 5.1:-79523210 | MS.gene38115:CDS |
| TTAACCTCATGCTCATTCAA+CGG | 0.576007 | 5.1:+79523717 | None:intergenic |
| TCTATGAAAAGGGTTCCAAA+TGG | 0.576216 | 5.1:+79522475 | None:intergenic |
| TCAAGGGAACTTCGGAAGGG+TGG | 0.582382 | 5.1:-79522792 | MS.gene38115:CDS |
| GAGGACAATCAAGGGAACTT+CGG | 0.588348 | 5.1:-79522800 | MS.gene38115:CDS |
| TATTGTCTGTGCTGAAGTGT+CGG | 0.590657 | 5.1:-79522368 | MS.gene38115:CDS |
| TTGGGTATACGCCTACTGAT+GGG | 0.590667 | 5.1:-79523578 | MS.gene38115:CDS |
| AACCGATAAGAGAGCAAGAG+AGG | 0.590854 | 5.1:-79523293 | MS.gene38115:CDS |
| CTGTGAGAAGGGACTTGGCA+AGG | 0.593223 | 5.1:-79523101 | MS.gene38115:CDS |
| CCCGAGGAATGCTGTTAACA+GGG | 0.593635 | 5.1:-79522882 | MS.gene38115:CDS |
| GAATCGAGAACCAATGTACC+CGG | 0.594098 | 5.1:+79523184 | None:intergenic |
| CTGCACGCAAATATCCATCA+TGG | 0.601251 | 5.1:-79522525 | MS.gene38115:CDS |
| TGGGGTTAAGATTCAGTGGA+CGG | 0.601528 | 5.1:-79523610 | MS.gene38115:CDS |
| AAAATGGGGTTAAGATTCAG+TGG | 0.603944 | 5.1:-79523614 | MS.gene38115:CDS |
| CGTCTCTGGAGGACAATCAA+GGG | 0.608239 | 5.1:-79522808 | MS.gene38115:CDS |
| CAAGGAAATGGGAAGAGCAC+CGG | 0.608554 | 5.1:+79522675 | None:intergenic |
| GAATCGTAAAAGCAATTCCA+GGG | 0.610880 | 5.1:+79522737 | None:intergenic |
| TGAATGAGGAGCTTTCTGGT+TGG | 0.611294 | 5.1:-79523044 | MS.gene38115:CDS |
| TAATCAGCACTCCCATCAGT+AGG | 0.620115 | 5.1:+79523567 | None:intergenic |
| AATCCTCCAATGAGAGTGAG+TGG | 0.620654 | 5.1:+79522613 | None:intergenic |
| ATTAACCTGATACAAATCGC+GGG | 0.624292 | 5.1:+79523677 | None:intergenic |
| GAGATTTGCGAATCAAAATG+GGG | 0.624926 | 5.1:-79523628 | MS.gene38115:CDS |
| GACACAGGCTCAGATGAATG+AGG | 0.626360 | 5.1:-79523058 | MS.gene38115:CDS |
| GGGTTAAGATTCAGTGGACG+GGG | 0.641344 | 5.1:-79523608 | MS.gene38115:CDS |
| TATTAACCTGATACAAATCG+CGG | 0.643502 | 5.1:+79523676 | None:intergenic |
| GGAATTGGACAAAGAGACAC+AGG | 0.649188 | 5.1:-79523073 | MS.gene38115:CDS |
| CAATCAAGGGAACTTCGGAA+GGG | 0.650163 | 5.1:-79522795 | MS.gene38115:CDS |
| ATGTAAGTGTACGTCTCTGG+AGG | 0.654933 | 5.1:-79522819 | MS.gene38115:CDS |
| GAACGAGACAAGGAAACCAA+TGG | 0.655608 | 5.1:+79522135 | None:intergenic |
| AGCCCCGTTGAATGAGCATG+AGG | 0.656553 | 5.1:-79523721 | MS.gene38115:CDS |
| AAATAAGCATCCCAACGAGA+CGG | 0.656942 | 5.1:+79523222 | None:intergenic |
| TTCATGTCACCAGCATCCCG+AGG | 0.664686 | 5.1:-79522898 | MS.gene38115:CDS |
| GCACTGAAATGCAGAACCAG+AGG | 0.665993 | 5.1:+79522635 | None:intergenic |
| TGTCTGTGCTGAAGTGTCGG+TGG | 0.666457 | 5.1:-79522365 | MS.gene38115:CDS |
| TCTGTGTCGAAGATTGGCGG+TGG | 0.671895 | 5.1:-79522324 | MS.gene38115:CDS |
| TGCTGGTGACATGAAACCCA+AGG | 0.672427 | 5.1:+79522906 | None:intergenic |
| GCACAAAGTAGAACGAGACA+AGG | 0.678415 | 5.1:+79522125 | None:intergenic |
| CACAGAGATGCATATATGTG+AGG | 0.682212 | 5.1:+79522341 | None:intergenic |
| TGTTGAGATTATTGGTACTG+GGG | 0.682390 | 5.1:-79523490 | MS.gene38115:CDS |
| AATCGAGAACCAATGTACCC+GGG | 0.702225 | 5.1:+79523185 | None:intergenic |
| CCTTATTGTCAGCCTCTCGG+CGG | 0.715518 | 5.1:-79523855 | MS.gene38115:CDS |
| AACCTCATGCTCATTCAACG+GGG | 0.727502 | 5.1:+79523719 | None:intergenic |
| CATCTCCAACCATCACACAG+AGG | 0.773497 | 5.1:+79522974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATCATCTTAAGTTTA+CGG | - | chr5.1:79522593-79522612 | MS.gene38115:CDS | 15.0% |
| !!! | AATTTGAAATACAAGGAAAT+GGG | + | chr5.1:79523473-79523492 | None:intergenic | 20.0% |
| !!! | ACATTCATTTTAAACAGATA+TGG | + | chr5.1:79522366-79522385 | None:intergenic | 20.0% |
| !!! | ATAATTTTGTATCTTTTCCT+GGG | - | chr5.1:79523278-79523297 | MS.gene38115:CDS | 20.0% |
| !!! | GAAAAACAATTTGAAATACA+AGG | + | chr5.1:79523480-79523499 | None:intergenic | 20.0% |
| ! | AAAGAAAAGCTCTATGAAAA+GGG | + | chr5.1:79523672-79523691 | None:intergenic | 25.0% |
| ! | AGAAGTCAATGAATTAACTT+TGG | + | chr5.1:79522223-79522242 | None:intergenic | 25.0% |
| ! | GAATTAACTTTGGCATAAAT+TGG | + | chr5.1:79522213-79522232 | None:intergenic | 25.0% |
| ! | TAAAGAAAAGCTCTATGAAA+AGG | + | chr5.1:79523673-79523692 | None:intergenic | 25.0% |
| ! | TATATGCATACATATGCAAA+TGG | - | chr5.1:79522183-79522202 | MS.gene38115:CDS | 25.0% |
| ! | TTGTGAAAAGTGATATAAGA+TGG | - | chr5.1:79522889-79522908 | MS.gene38115:CDS | 25.0% |
| !! | AATCTGGATTTGAAATTGTT+GGG | - | chr5.1:79522709-79522728 | MS.gene38115:CDS | 25.0% |
| !! | CAATTTGAAATACAAGGAAA+TGG | + | chr5.1:79523474-79523493 | None:intergenic | 25.0% |
| !! | GATAATTTTGTATCTTTTCC+TGG | - | chr5.1:79523277-79523296 | MS.gene38115:CDS | 25.0% |
| !!! | ATTTCAAATTGTTTTTCCTC+TGG | - | chr5.1:79523483-79523502 | MS.gene38115:CDS | 25.0% |
| !!! | GATCTATTGGATTTGTTTTT+TGG | - | chr5.1:79522107-79522126 | MS.gene38115:CDS | 25.0% |
| !!! | GGATTTGTTTTTTGGTTATT+GGG | - | chr5.1:79522115-79522134 | MS.gene38115:CDS | 25.0% |
| !!! | TGGATTTGTTTTTTGGTTAT+TGG | - | chr5.1:79522114-79522133 | MS.gene38115:CDS | 25.0% |
| !!! | TTCATTGACTTCTATTGAAA+CGG | - | chr5.1:79522230-79522249 | MS.gene38115:CDS | 25.0% |
| AGGAAGACTATAGTAACTAA+AGG | + | chr5.1:79522262-79522281 | None:intergenic | 30.0% | |
| ATATAAAGTATAGCAGAGAC+AGG | + | chr5.1:79523932-79523951 | None:intergenic | 30.0% | |
| ATGAGATTTGCGAATCAAAA+TGG | - | chr5.1:79522504-79522523 | MS.gene38115:CDS | 30.0% | |
| ATGTTGAGATTATTGGTACT+GGG | - | chr5.1:79522643-79522662 | MS.gene38115:CDS | 30.0% | |
| GGAAATGATGTTGAGATTAT+TGG | - | chr5.1:79522636-79522655 | MS.gene38115:CDS | 30.0% | |
| GGAAGACTATAGTAACTAAA+GGG | + | chr5.1:79522261-79522280 | None:intergenic | 30.0% | |
| GTCTCTGCTATACTTTATAT+CGG | - | chr5.1:79523932-79523951 | MS.gene38115:CDS | 30.0% | |
| GTTCAAATTAGCAAAAGCAA+TGG | - | chr5.1:79522141-79522160 | MS.gene38115:CDS | 30.0% | |
| TATGTATGCATATAACTTCC+AGG | + | chr5.1:79522177-79522196 | None:intergenic | 30.0% | |
| TATTAACCTGATACAAATCG+CGG | + | chr5.1:79522461-79522480 | None:intergenic | 30.0% | |
| TGAGAAAATCTTCGATCTAT+TGG | - | chr5.1:79522094-79522113 | MS.gene38115:CDS | 30.0% | |
| TGAGATTTGCGAATCAAAAT+GGG | - | chr5.1:79522505-79522524 | MS.gene38115:CDS | 30.0% | |
| TGATACTTATCCAACTCATT+GGG | + | chr5.1:79522822-79522841 | None:intergenic | 30.0% | |
| TTGATACTTATCCAACTCAT+TGG | + | chr5.1:79522823-79522842 | None:intergenic | 30.0% | |
| TTTCTTAAGAACTGTGAGAA+GGG | - | chr5.1:79523022-79523041 | MS.gene38115:CDS | 30.0% | |
| TTTGTACTCCATTAACTACT+TGG | - | chr5.1:79523880-79523899 | MS.gene38115:CDS | 30.0% | |
| ! | GAATCTGGATTTGAAATTGT+TGG | - | chr5.1:79522708-79522727 | MS.gene38115:CDS | 30.0% |
| ! | TCATCTTAAGTTTACGGTTT+TGG | - | chr5.1:79522599-79522618 | MS.gene38115:CDS | 30.0% |
| ! | TCTTTATCCTTTCTAGTATC+TGG | - | chr5.1:79523687-79523706 | MS.gene38115:CDS | 30.0% |
| ! | TTTTCTTAAGAACTGTGAGA+AGG | - | chr5.1:79523021-79523040 | MS.gene38115:CDS | 30.0% |
| !!! | TTATGTTTTTGGTTTTCTGC+TGG | - | chr5.1:79523724-79523743 | MS.gene38115:CDS | 30.0% |
| AAAATGGGGTTAAGATTCAG+TGG | - | chr5.1:79522520-79522539 | MS.gene38115:CDS | 35.0% | |
| ACTGATAAGAAGAAGGAATC+TGG | - | chr5.1:79522693-79522712 | MS.gene38115:CDS | 35.0% | |
| AGAATCGTAAAAGCAATTCC+AGG | + | chr5.1:79523401-79523420 | None:intergenic | 35.0% | |
| ATTAACCTGATACAAATCGC+GGG | + | chr5.1:79522460-79522479 | None:intergenic | 35.0% | |
| ATTGCAATCATGCTTTCAAC+TGG | - | chr5.1:79523974-79523993 | MS.gene38115:CDS | 35.0% | |
| GAATCGTAAAAGCAATTCCA+GGG | + | chr5.1:79523400-79523419 | None:intergenic | 35.0% | |
| GAGATTTGCGAATCAAAATG+GGG | - | chr5.1:79522506-79522525 | MS.gene38115:CDS | 35.0% | |
| GATGCTTATTTGAAGATGGA+GGG | - | chr5.1:79522924-79522943 | MS.gene38115:CDS | 35.0% | |
| GATGTTGAGATTATTGGTAC+TGG | - | chr5.1:79522642-79522661 | MS.gene38115:CDS | 35.0% | |
| GTCGAAAACCAAGTAGTTAA+TGG | + | chr5.1:79523891-79523910 | None:intergenic | 35.0% | |
| TCTATGAAAAGGGTTCCAAA+TGG | + | chr5.1:79523662-79523681 | None:intergenic | 35.0% | |
| TGACAAAAACAATACCAGCT+AGG | + | chr5.1:79523001-79523020 | None:intergenic | 35.0% | |
| TGATTCGCAAATCTCATAAC+AGG | + | chr5.1:79522501-79522520 | None:intergenic | 35.0% | |
| TGCTGAAACTGATAAGAAGA+AGG | - | chr5.1:79522686-79522705 | MS.gene38115:CDS | 35.0% | |
| TGTTGAGATTATTGGTACTG+GGG | - | chr5.1:79522644-79522663 | MS.gene38115:CDS | 35.0% | |
| TGTTGTGGGTGATGTATTTA+GGG | - | chr5.1:79523118-79523137 | MS.gene38115:CDS | 35.0% | |
| TTAACCTCATGCTCATTCAA+CGG | + | chr5.1:79522420-79522439 | None:intergenic | 35.0% | |
| TTGGGATGCTTATTTGAAGA+TGG | - | chr5.1:79522920-79522939 | MS.gene38115:CDS | 35.0% | |
| TTGTTGTGGGTGATGTATTT+AGG | - | chr5.1:79523117-79523136 | MS.gene38115:CDS | 35.0% | |
| ! | ACTCTCATTGGAGGATTTTT+AGG | - | chr5.1:79523527-79523546 | MS.gene38115:CDS | 35.0% |
| ! | AGCAATGGTTTTTATCTTCC+TGG | - | chr5.1:79522156-79522175 | MS.gene38115:CDS | 35.0% |
| ! | CTCTCATTGGAGGATTTTTA+GGG | - | chr5.1:79523528-79523547 | MS.gene38115:CDS | 35.0% |
| ! | GGGAGGTTCTATTATGTTTT+TGG | - | chr5.1:79523713-79523732 | MS.gene38115:CDS | 35.0% |
| !! | AGCACTGAATTTTGTTCTCT+GGG | - | chr5.1:79523424-79523443 | MS.gene38115:CDS | 35.0% |
| !!! | GTTTTGGTTCATGAGTATGA+AGG | - | chr5.1:79522615-79522634 | MS.gene38115:CDS | 35.0% |
| AAATAAGCATCCCAACGAGA+CGG | + | chr5.1:79522915-79522934 | None:intergenic | 40.0% | |
| AATCTCGGTGAGCTTCTTAT+GGG | - | chr5.1:79522321-79522340 | MS.gene38115:CDS | 40.0% | |
| ACAATTGTGTTTGCAGCCTT+GGG | - | chr5.1:79523212-79523231 | MS.gene38115:CDS | 40.0% | |
| ATCCTCTCTTGCTCTCTTAT+CGG | + | chr5.1:79522846-79522865 | None:intergenic | 40.0% | |
| ATGCTTTCAACTGGAACCAT+TGG | - | chr5.1:79523983-79524002 | MS.gene38115:CDS | 40.0% | |
| CACAGAGATGCATATATGTG+AGG | + | chr5.1:79523796-79523815 | None:intergenic | 40.0% | |
| CAGGAATTTCTCTTGGAATC+TGG | + | chr5.1:79523592-79523611 | None:intergenic | 40.0% | |
| CTCGATTCTAAATTCGCTGA+TGG | - | chr5.1:79522965-79522984 | MS.gene38115:CDS | 40.0% | |
| GAGACGTACACTTACATATC+CGG | + | chr5.1:79523312-79523331 | None:intergenic | 40.0% | |
| GATAAACTGTCCCAATGAGT+TGG | - | chr5.1:79522809-79522828 | MS.gene38115:CDS | 40.0% | |
| GATATGTAAGTGTACGTCTC+TGG | - | chr5.1:79523312-79523331 | MS.gene38115:CDS | 40.0% | |
| GGATGCTTATTTGAAGATGG+AGG | - | chr5.1:79522923-79522942 | MS.gene38115:CDS | 40.0% | |
| TAACCTCATGCTCATTCAAC+GGG | + | chr5.1:79522419-79522438 | None:intergenic | 40.0% | |
| TACAATTGTGTTTGCAGCCT+TGG | - | chr5.1:79523211-79523230 | MS.gene38115:CDS | 40.0% | |
| TATTGTCTGTGCTGAAGTGT+CGG | - | chr5.1:79523766-79523785 | MS.gene38115:CDS | 40.0% | |
| TGTAACTTCGTCATGACTTC+CGG | + | chr5.1:79522768-79522787 | None:intergenic | 40.0% | |
| ! | ATCCTTTCTAGTATCTGGCT+TGG | - | chr5.1:79523692-79523711 | MS.gene38115:CDS | 40.0% |
| ! | ATGGTGATCTTTTTCCTAGC+TGG | - | chr5.1:79522984-79523003 | MS.gene38115:CDS | 40.0% |
| ! | ATTATTGGTACTGGGGAAGA+GGG | - | chr5.1:79522651-79522670 | MS.gene38115:CDS | 40.0% |
| ! | GCACTGAATTTTGTTCTCTG+GGG | - | chr5.1:79523425-79523444 | MS.gene38115:CDS | 40.0% |
| ! | TCCTTTCTAGTATCTGGCTT+GGG | - | chr5.1:79523693-79523712 | MS.gene38115:CDS | 40.0% |
| !! | AAGAAAAGTGCCGAGAATCT+CGG | - | chr5.1:79522306-79522325 | MS.gene38115:CDS | 40.0% |
| !! | CAGCACTGAATTTTGTTCTC+TGG | - | chr5.1:79523423-79523442 | MS.gene38115:CDS | 40.0% |
| AAACTCCTCTGTGTGATGGT+TGG | - | chr5.1:79523155-79523174 | MS.gene38115:CDS | 45.0% | |
| AACCGATAAGAGAGCAAGAG+AGG | - | chr5.1:79522841-79522860 | MS.gene38115:CDS | 45.0% | |
| AACCTCATGCTCATTCAACG+GGG | + | chr5.1:79522418-79522437 | None:intergenic | 45.0% | |
| AAGAACTGTGAGAAGGGACT+TGG | - | chr5.1:79523028-79523047 | MS.gene38115:CDS | 45.0% | |
| AAGAAGCTCACCGAGATTCT+CGG | + | chr5.1:79522319-79522338 | None:intergenic | 45.0% | |
| AATCCTCCAATGAGAGTGAG+TGG | + | chr5.1:79523524-79523543 | None:intergenic | 45.0% | |
| AATCGAGAACCAATGTACCC+GGG | + | chr5.1:79522952-79522971 | None:intergenic | 45.0% | |
| ACAATCAAGGGAACTTCGGA+AGG | - | chr5.1:79523338-79523357 | MS.gene38115:CDS | 45.0% | |
| ATATAAGATGGCCGTCTCGT+TGG | - | chr5.1:79522901-79522920 | MS.gene38115:CDS | 45.0% | |
| ATCTCTGTGTCGAAGATTGG+CGG | - | chr5.1:79523807-79523826 | MS.gene38115:CDS | 45.0% | |
| ATGTAAGTGTACGTCTCTGG+AGG | - | chr5.1:79523315-79523334 | MS.gene38115:CDS | 45.0% | |
| ATTGGGTATACGCCTACTGA+TGG | - | chr5.1:79522555-79522574 | MS.gene38115:CDS | 45.0% | |
| ATTTGAAGATGGAGGGTTCC+CGG | - | chr5.1:79522931-79522950 | MS.gene38115:CDS | 45.0% | |
| CAATCAAGGGAACTTCGGAA+GGG | - | chr5.1:79523339-79523358 | MS.gene38115:CDS | 45.0% | |
| CAGATGAATGAGGAGCTTTC+TGG | - | chr5.1:79523086-79523105 | MS.gene38115:CDS | 45.0% | |
| CCAAGAACTAGAAGCCATGA+TGG | + | chr5.1:79523626-79523645 | None:intergenic | 45.0% | |
| CTCAAAACTCCTCTGTGTGA+TGG | - | chr5.1:79523151-79523170 | MS.gene38115:CDS | 45.0% | |
| CTGCACGCAAATATCCATCA+TGG | - | chr5.1:79523609-79523628 | MS.gene38115:CDS | 45.0% | |
| CTTCCTTATTGTCAGCCTCT+CGG | - | chr5.1:79522276-79522295 | MS.gene38115:CDS | 45.0% | |
| CTTGGCAAGGTATGAGGAAT+TGG | - | chr5.1:79523046-79523065 | MS.gene38115:CDS | 45.0% | |
| GAAAAAGCAAGCAGCAAACC+AGG | + | chr5.1:79523378-79523397 | None:intergenic | 45.0% | |
| GAACGAGACAAGGAAACCAA+TGG | + | chr5.1:79524002-79524021 | None:intergenic | 45.0% | |
| GAATCGAGAACCAATGTACC+CGG | + | chr5.1:79522953-79522972 | None:intergenic | 45.0% | |
| GAATCTCGGTGAGCTTCTTA+TGG | - | chr5.1:79522320-79522339 | MS.gene38115:CDS | 45.0% | |
| GAGGACAATCAAGGGAACTT+CGG | - | chr5.1:79523334-79523353 | MS.gene38115:CDS | 45.0% | |
| GCACAAAGTAGAACGAGACA+AGG | + | chr5.1:79524012-79524031 | None:intergenic | 45.0% | |
| GGAATTGGACAAAGAGACAC+AGG | - | chr5.1:79523061-79523080 | MS.gene38115:CDS | 45.0% | |
| GGTGATGTATTTAGGGAACC+TGG | - | chr5.1:79523125-79523144 | MS.gene38115:CDS | 45.0% | |
| GTTCAGATTCTTGGAATGGC+TGG | - | chr5.1:79523185-79523204 | MS.gene38115:CDS | 45.0% | |
| TAATCAGCACTCCCATCAGT+AGG | + | chr5.1:79522570-79522589 | None:intergenic | 45.0% | |
| TATAAGATGGCCGTCTCGTT+GGG | - | chr5.1:79522902-79522921 | MS.gene38115:CDS | 45.0% | |
| TCAGTAGGCGTATACCCAAT+AGG | + | chr5.1:79522555-79522574 | None:intergenic | 45.0% | |
| TCCCAAGCCAGATACTAGAA+AGG | + | chr5.1:79523697-79523716 | None:intergenic | 45.0% | |
| TCCCTGTTAACAGCATTCCT+CGG | + | chr5.1:79523256-79523275 | None:intergenic | 45.0% | |
| TCTGTGTGATGGTTGGAGAT+GGG | - | chr5.1:79523162-79523181 | MS.gene38115:CDS | 45.0% | |
| TGCATCTCTGTGTCGAAGAT+TGG | - | chr5.1:79523804-79523823 | MS.gene38115:CDS | 45.0% | |
| TGGGGTTAAGATTCAGTGGA+CGG | - | chr5.1:79522524-79522543 | MS.gene38115:CDS | 45.0% | |
| TGGGGTTCAGATTCTTGGAA+TGG | - | chr5.1:79523181-79523200 | MS.gene38115:CDS | 45.0% | |
| TTGCGTGCAGGAATTTCTCT+TGG | + | chr5.1:79523599-79523618 | None:intergenic | 45.0% | |
| TTGGGTATACGCCTACTGAT+GGG | - | chr5.1:79522556-79522575 | MS.gene38115:CDS | 45.0% | |
| TTGTAGTGTGAAACGCGATC+CGG | - | chr5.1:79522746-79522765 | MS.gene38115:CDS | 45.0% | |
| ! | CTTTTCCTGGGAATTGCTTC+CGG | - | chr5.1:79523290-79523309 | MS.gene38115:CDS | 45.0% |
| ! | GATTATTGGTACTGGGGAAG+AGG | - | chr5.1:79522650-79522669 | MS.gene38115:CDS | 45.0% |
| ! | TATCGGCTATTCACTGCTCA+TGG | - | chr5.1:79523949-79523968 | MS.gene38115:CDS | 45.0% |
| ! | TGAATGAGGAGCTTTCTGGT+TGG | - | chr5.1:79523090-79523109 | MS.gene38115:CDS | 45.0% |
| ! | TTCGACTTGCAGAGTTTGAG+TGG | - | chr5.1:79523905-79523924 | MS.gene38115:CDS | 45.0% |
| !! | CATGATGGATATTTGCGTGC+AGG | + | chr5.1:79523611-79523630 | None:intergenic | 45.0% |
| !! | CCATCATGGCTTCTAGTTCT+TGG | - | chr5.1:79523623-79523642 | MS.gene38115:CDS | 45.0% |
| !! | TCTGGTTGGAAGCTTGTTGT+GGG | - | chr5.1:79523104-79523123 | MS.gene38115:CDS | 45.0% |
| !! | TGGAAGGCATTCTATGCATC+AGG | - | chr5.1:79523836-79523855 | MS.gene38115:CDS | 45.0% |
| !! | TTCTGGTTGGAAGCTTGTTG+TGG | - | chr5.1:79523103-79523122 | MS.gene38115:CDS | 45.0% |
| !! | TTTCTAGTATCTGGCTTGGG+AGG | - | chr5.1:79523696-79523715 | MS.gene38115:CDS | 45.0% |
| !!! | TTTGCTGCTTGCTTTTTCCC+TGG | - | chr5.1:79523380-79523399 | MS.gene38115:CDS | 45.0% |
| AAGGGACTTGGCAAGGTATG+AGG | - | chr5.1:79523040-79523059 | MS.gene38115:CDS | 50.0% | |
| AGTGGACGGGGTTTCCTATT+GGG | - | chr5.1:79522538-79522557 | MS.gene38115:CDS | 50.0% | |
| CATATCCGGAAGCAATTCCC+AGG | + | chr5.1:79523298-79523317 | None:intergenic | 50.0% | |
| CATCTCCAACCATCACACAG+AGG | + | chr5.1:79523163-79523182 | None:intergenic | 50.0% | |
| CCCGAGGAATGCTGTTAACA+GGG | - | chr5.1:79523252-79523271 | MS.gene38115:CDS | 50.0% | |
| CCCTGTTAACAGCATTCCTC+GGG | + | chr5.1:79523255-79523274 | None:intergenic | 50.0% | |
| CTCTGTGTGATGGTTGGAGA+TGG | - | chr5.1:79523161-79523180 | MS.gene38115:CDS | 50.0% | |
| CTGTGTGATGGTTGGAGATG+GGG | - | chr5.1:79523163-79523182 | MS.gene38115:CDS | 50.0% | |
| GACACAGGCTCAGATGAATG+AGG | - | chr5.1:79523076-79523095 | MS.gene38115:CDS | 50.0% | |
| GAGAACCCGCGATTTGTATC+AGG | - | chr5.1:79522452-79522471 | MS.gene38115:CDS | 50.0% | |
| GCACTGAAATGCAGAACCAG+AGG | + | chr5.1:79523502-79523521 | None:intergenic | 50.0% | |
| GGAGATGGGGTTCAGATTCT+TGG | - | chr5.1:79523176-79523195 | MS.gene38115:CDS | 50.0% | |
| GGATCGCGTTTCACACTACA+AGG | + | chr5.1:79522747-79522766 | None:intergenic | 50.0% | |
| GGGGTTAAGATTCAGTGGAC+GGG | - | chr5.1:79522525-79522544 | MS.gene38115:CDS | 50.0% | |
| GGGTTAAGATTCAGTGGACG+GGG | - | chr5.1:79522526-79522545 | MS.gene38115:CDS | 50.0% | |
| TCCCGAGGAATGCTGTTAAC+AGG | - | chr5.1:79523251-79523270 | MS.gene38115:CDS | 50.0% | |
| TGCTGGTGACATGAAACCCA+AGG | + | chr5.1:79523231-79523250 | None:intergenic | 50.0% | |
| TTTGAAGATGGAGGGTTCCC+GGG | - | chr5.1:79522932-79522951 | MS.gene38115:CDS | 50.0% | |
| ! | AAGGGTGGAGATCGATTTCC+TGG | - | chr5.1:79523357-79523376 | MS.gene38115:CDS | 50.0% |
| ! | ACGTCTCTGGAGGACAATCA+AGG | - | chr5.1:79523325-79523344 | MS.gene38115:CDS | 50.0% |
| ! | CAAGGAAATGGGAAGAGCAC+CGG | + | chr5.1:79523462-79523481 | None:intergenic | 50.0% |
| ! | CGTCTCTGGAGGACAATCAA+GGG | - | chr5.1:79523326-79523345 | MS.gene38115:CDS | 50.0% |
| ! | CTTTTCTTAATGCCGCCGAG+AGG | + | chr5.1:79522294-79522313 | None:intergenic | 50.0% |
| ! | GGAATCTGGTTAGTTCGCAC+AGG | + | chr5.1:79523578-79523597 | None:intergenic | 50.0% |
| ! | GGTGCTGGAACTCTTCCATT+TGG | - | chr5.1:79523644-79523663 | MS.gene38115:CDS | 50.0% |
| ! | TCAGTGCCACTCACTCTCAT+TGG | - | chr5.1:79523515-79523534 | MS.gene38115:CDS | 50.0% |
| !! | TGGCTTCTAGTTCTTGGTGC+TGG | - | chr5.1:79523629-79523648 | MS.gene38115:CDS | 50.0% |
| !!! | CAGAGGAGTTTTGAGCAACC+AGG | + | chr5.1:79523146-79523165 | None:intergenic | 50.0% |
| AACAGCATTCCTCGGGATGC+TGG | + | chr5.1:79523248-79523267 | None:intergenic | 55.0% | |
| AGCCCCGTTGAATGAGCATG+AGG | - | chr5.1:79522413-79522432 | MS.gene38115:CDS | 55.0% | |
| CAGTGGACGGGGTTTCCTAT+TGG | - | chr5.1:79522537-79522556 | MS.gene38115:CDS | 55.0% | |
| CCTTATTGTCAGCCTCTCGG+CGG | - | chr5.1:79522279-79522298 | MS.gene38115:CDS | 55.0% | |
| CTGTGAGAAGGGACTTGGCA+AGG | - | chr5.1:79523033-79523052 | MS.gene38115:CDS | 55.0% | |
| TCAAGGGAACTTCGGAAGGG+TGG | - | chr5.1:79523342-79523361 | MS.gene38115:CDS | 55.0% | |
| TCTGTGTCGAAGATTGGCGG+TGG | - | chr5.1:79523810-79523829 | MS.gene38115:CDS | 55.0% | |
| TTCATGTCACCAGCATCCCG+AGG | - | chr5.1:79523236-79523255 | MS.gene38115:CDS | 55.0% | |
| ! | GGTACTGGGGAAGAGGGTAT+GGG | - | chr5.1:79522657-79522676 | MS.gene38115:CDS | 55.0% |
| ! | GTGCCACTCACTCTCATTGG+AGG | - | chr5.1:79523518-79523537 | MS.gene38115:CDS | 55.0% |
| ! | TGGTACTGGGGAAGAGGGTA+TGG | - | chr5.1:79522656-79522675 | MS.gene38115:CDS | 55.0% |
| !! | TGTCTGTGCTGAAGTGTCGG+TGG | - | chr5.1:79523769-79523788 | MS.gene38115:CDS | 55.0% |
| CCGCCGAGAGGCTGACAATA+AGG | + | chr5.1:79522282-79522301 | None:intergenic | 60.0% | |
| GTGTCGAAGATTGGCGGTGG+TGG | - | chr5.1:79523813-79523832 | MS.gene38115:CDS | 60.0% | |
| TGGAGGGTTCCCGGGTACAT+TGG | - | chr5.1:79522940-79522959 | MS.gene38115:CDS | 60.0% | |
| ! | TCGAAGATTGGCGGTGGTGG+TGG | - | chr5.1:79523816-79523835 | MS.gene38115:CDS | 60.0% |
| !! | AGATTGGCGGTGGTGGTGGA+AGG | - | chr5.1:79523820-79523839 | MS.gene38115:CDS | 60.0% |
| !! | CTCTGGGGCAGCAACAGTAC+CGG | - | chr5.1:79523440-79523459 | MS.gene38115:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 79522093 | 79524063 | 79522093 | ID=MS.gene38115 |
| chr5.1 | mRNA | 79522093 | 79524063 | 79522093 | ID=MS.gene38115.t1;Parent=MS.gene38115 |
| chr5.1 | exon | 79522093 | 79524063 | 79522093 | ID=MS.gene38115.t1.exon1;Parent=MS.gene38115.t1 |
| chr5.1 | CDS | 79522093 | 79524063 | 79522093 | ID=cds.MS.gene38115.t1;Parent=MS.gene38115.t1 |
| Gene Sequence |
| Protein sequence |
