Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38117.t1 | XP_024641015.1 | 93.6 | 1203 | 67 | 4 | 1 | 1197 | 1 | 1199 | 0.00E+00 | 2174.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38117.t1 | G7K0P9 | 93.5 | 1203 | 67 | 5 | 1 | 1197 | 1 | 1198 | 0.0e+00 | 2169.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene38117 | 0.826247 | 3.01E-54 | -1.69E-46 |
| MS.gene052367 | MS.gene38117 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene38117 | 0.802168 | 6.38E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene38117 | 0.804366 | 2.24E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene38117 | 0.80991 | 1.50E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene38117 | 0.814578 | 1.43E-51 | -1.69E-46 |
| MS.gene060565 | MS.gene38117 | 0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene38117 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene38117 | 0.817501 | 3.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38117.t1 | MTR_5g098710 | 95.349 | 1204 | 43 | 6 | 1 | 1197 | 1 | 1198 | 0.0 | 2348 |
| MS.gene38117.t1 | MTR_5g065900 | 41.231 | 1283 | 613 | 28 | 1 | 1195 | 1 | 1230 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38117.t1 | AT5G48310 | 55.181 | 1187 | 452 | 18 | 33 | 1197 | 1 | 1129 | 0.0 | 1236 |
| MS.gene38117.t1 | AT5G48310 | 54.892 | 1206 | 453 | 19 | 33 | 1197 | 1 | 1156 | 0.0 | 1233 |
| MS.gene38117.t1 | AT4G24610 | 45.047 | 959 | 462 | 13 | 288 | 1195 | 206 | 1150 | 0.0 | 840 |
| MS.gene38117.t1 | AT4G24610 | 45.047 | 959 | 462 | 13 | 288 | 1195 | 210 | 1154 | 0.0 | 840 |
| MS.gene38117.t1 | AT4G24610 | 45.000 | 960 | 462 | 14 | 288 | 1195 | 210 | 1155 | 0.0 | 836 |
| MS.gene38117.t1 | AT4G24610 | 45.000 | 960 | 462 | 14 | 288 | 1195 | 206 | 1151 | 0.0 | 836 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 175 | 1083 | 0.0 | 707 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 175 | 1083 | 0.0 | 707 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 175 | 1083 | 0.0 | 707 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 134 | 1042 | 0.0 | 706 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 134 | 1042 | 0.0 | 706 |
| MS.gene38117.t1 | AT5G65440 | 39.098 | 931 | 491 | 15 | 311 | 1187 | 134 | 1042 | 0.0 | 706 |
| MS.gene38117.t1 | AT5G65440 | 37.720 | 965 | 491 | 16 | 311 | 1187 | 175 | 1117 | 0.0 | 689 |
| MS.gene38117.t1 | AT5G65440 | 38.106 | 866 | 460 | 15 | 311 | 1122 | 134 | 977 | 0.0 | 634 |
| MS.gene38117.t1 | AT5G65440 | 38.106 | 866 | 460 | 15 | 311 | 1122 | 175 | 1018 | 0.0 | 634 |
Find 256 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATTTAGCCGCAAGTTTC+GGG | 0.157218 | 5.1:+79511704 | None:intergenic |
| TCCCGAAACTTGCGGCTAAA+TGG | 0.173469 | 5.1:-79511705 | MS.gene38117:CDS |
| GCCTCAATACTCCTTGTATT+TGG | 0.182439 | 5.1:-79509360 | MS.gene38117:CDS |
| TATGATGAGGAACAGTTATT+TGG | 0.188229 | 5.1:-79515162 | MS.gene38117:CDS |
| ACTTATTTGCAAGCAATAAT+AGG | 0.201654 | 5.1:-79508788 | MS.gene38117:CDS |
| CTCACTTCTGGCCTTCATTA+GGG | 0.203293 | 5.1:+79511415 | None:intergenic |
| TTTAGGAGTAAGATTATTAT+TGG | 0.222301 | 5.1:+79515395 | None:intergenic |
| CTTCTAGAATTAACAGTATT+AGG | 0.238150 | 5.1:+79515051 | None:intergenic |
| TCTCACTTCTGGCCTTCATT+AGG | 0.239461 | 5.1:+79511414 | None:intergenic |
| GTAATTGTGAAACAAATTTC+TGG | 0.249080 | 5.1:+79509649 | None:intergenic |
| ACACAGCTCTGTGCTATAAA+TGG | 0.254036 | 5.1:+79509919 | None:intergenic |
| GAGCCAAGGGGATGCTTTAT+TGG | 0.259764 | 5.1:-79512542 | MS.gene38117:CDS |
| GCCCATTTAGCCGCAAGTTT+CGG | 0.273486 | 5.1:+79511703 | None:intergenic |
| GGAGGTAAAGAAGGAGATTT+AGG | 0.278490 | 5.1:+79515378 | None:intergenic |
| TTATCATTAAGGTAAGAAAT+TGG | 0.284007 | 5.1:+79512472 | None:intergenic |
| CTCACAGAGAAGTATACTTT+TGG | 0.286313 | 5.1:-79510850 | MS.gene38117:intron |
| GAGGAACAGTTATTTGGATT+TGG | 0.296334 | 5.1:-79515156 | MS.gene38117:CDS |
| TTTGAATGATTCTGTTGATT+TGG | 0.300090 | 5.1:-79514917 | MS.gene38117:CDS |
| AGCCTCTTGCCCATGCTTGC+AGG | 0.302906 | 5.1:+79513896 | None:intergenic |
| ACAGGTTTAACCGATCATTT+TGG | 0.303277 | 5.1:-79510753 | MS.gene38117:CDS |
| CACATACAGGATTATCATTA+AGG | 0.303700 | 5.1:+79512461 | None:intergenic |
| CTGGCTCTTCGAAGTGCCTT+TGG | 0.307080 | 5.1:-79513838 | MS.gene38117:CDS |
| GACAGACTGCAGCAAGAAAA+AGG | 0.309951 | 5.1:-79510409 | MS.gene38117:intron |
| ATGGATCTTGCTACGCTCTT+GGG | 0.310033 | 5.1:-79508289 | MS.gene38117:CDS |
| ACTTGCAAGTGAAGTCTCTT+TGG | 0.319778 | 5.1:+79509125 | None:intergenic |
| GCTGACCATGGATTGTATTA+TGG | 0.323976 | 5.1:+79510231 | None:intergenic |
| GACATATTGCTATGAAGATT+TGG | 0.329067 | 5.1:+79508515 | None:intergenic |
| AGATTTACTGATGGAGAGTT+AGG | 0.331074 | 5.1:-79515030 | MS.gene38117:CDS |
| TTCTATAAGAAATGAAATTC+AGG | 0.331997 | 5.1:-79510273 | MS.gene38117:CDS |
| ACTCCATGTGGAAGTGAAAT+TGG | 0.340049 | 5.1:-79514979 | MS.gene38117:CDS |
| ATAGCACAGAGCTGTGTAAA+AGG | 0.344097 | 5.1:-79509913 | MS.gene38117:CDS |
| CACAAGCTCCAGGCAGTCCT+TGG | 0.345260 | 5.1:+79511454 | None:intergenic |
| GACAGGATGCCCATGAATTT+AGG | 0.345736 | 5.1:+79508888 | None:intergenic |
| CTTATTTGCAAGCAATAATA+GGG | 0.349385 | 5.1:-79508787 | MS.gene38117:CDS |
| TCATCATAACATTGTGCAAT+TGG | 0.352430 | 5.1:+79515177 | None:intergenic |
| TCATGATAATCTCCACTTCC+AGG | 0.356135 | 5.1:+79512996 | None:intergenic |
| TTCTTGTAGATATCTATTAC+AGG | 0.357704 | 5.1:-79511498 | MS.gene38117:intron |
| GCTCCTCCTATATTTGTTGA+TGG | 0.363206 | 5.1:-79514883 | MS.gene38117:CDS |
| AGTCAGACTTCTCTCACTTC+TGG | 0.363501 | 5.1:+79511403 | None:intergenic |
| ATCTCGAGTCATGGAATATA+AGG | 0.364375 | 5.1:-79509802 | MS.gene38117:intron |
| GGACTGCCTTCTTAGAATCT+TGG | 0.368271 | 5.1:+79512512 | None:intergenic |
| TACCTTTCAGCAACAGTATT+AGG | 0.369090 | 5.1:+79514712 | None:intergenic |
| CAGAGATAACTTACTTGGTT+AGG | 0.370777 | 5.1:+79509059 | None:intergenic |
| TTCACAATTACATCATGGTT+TGG | 0.372780 | 5.1:-79509637 | MS.gene38117:CDS |
| CTTCTGTTGCACTCTTGAGT+TGG | 0.373272 | 5.1:+79513057 | None:intergenic |
| ATGGGAGATAAGAAGTTGTT+TGG | 0.376540 | 5.1:-79508857 | MS.gene38117:CDS |
| TATTGATTACCACTTCATAC+TGG | 0.382046 | 5.1:+79509387 | None:intergenic |
| AATGGATCTTGCTACGCTCT+TGG | 0.383403 | 5.1:-79508290 | MS.gene38117:CDS |
| GATGCATTTGCTGACTACTA+TGG | 0.386031 | 5.1:-79511663 | MS.gene38117:CDS |
| GGAGGAAAGAAAATAGAATA+TGG | 0.387361 | 5.1:-79508316 | MS.gene38117:CDS |
| TTCATGTTTCAGTTCTGTGC+AGG | 0.393565 | 5.1:-79509684 | MS.gene38117:intron |
| TGGCTCTTCGAAGTGCCTTT+GGG | 0.394270 | 5.1:-79513837 | MS.gene38117:intron |
| CAGTTATTTGGATTTGGTAA+TGG | 0.403146 | 5.1:-79515150 | MS.gene38117:CDS |
| ACTTGCAATATCTCAATAAC+AGG | 0.409440 | 5.1:-79514378 | MS.gene38117:intron |
| CCTCGTAGTAACCTCGCTTT+CGG | 0.410441 | 5.1:-79515330 | MS.gene38117:CDS |
| AAAGCATCCCCTTGGCTCAA+TGG | 0.411838 | 5.1:+79512547 | None:intergenic |
| CCACAAATTGTTCAGATTCA+AGG | 0.412166 | 5.1:-79508676 | MS.gene38117:intron |
| CCCGAAACTTGCGGCTAAAT+GGG | 0.412285 | 5.1:-79511704 | MS.gene38117:CDS |
| CCTTCACCATCAACAAATAT+AGG | 0.414292 | 5.1:+79514877 | None:intergenic |
| AAGCATCCCCTTGGCTCAAT+GGG | 0.416333 | 5.1:+79512548 | None:intergenic |
| AGTAAGATTATTATTGGAAA+GGG | 0.418558 | 5.1:+79515401 | None:intergenic |
| TTCGTCTATGCCTGCAAGCA+TGG | 0.422145 | 5.1:-79513906 | MS.gene38117:CDS |
| TGAAGGTGATGTCGGTTATT+CGG | 0.424528 | 5.1:-79514860 | MS.gene38117:CDS |
| CTTGATGAAAACTCGCCAAC+AGG | 0.425161 | 5.1:-79510771 | MS.gene38117:CDS |
| TCTCAGATGCAAAGATTAAG+AGG | 0.429798 | 5.1:-79508109 | MS.gene38117:CDS |
| TGGTGACAACAATCATATAA+AGG | 0.432851 | 5.1:-79512254 | MS.gene38117:intron |
| GGCAAGATCCAGCTCTCAAT+TGG | 0.438777 | 5.1:-79512292 | MS.gene38117:CDS |
| TGATCTTTGTAAAGCAGAAA+AGG | 0.441629 | 5.1:-79509588 | MS.gene38117:intron |
| GACATCAAGTATCCTCTTGA+TGG | 0.441717 | 5.1:+79508934 | None:intergenic |
| ATATGCAGAGTGACAGAATT+CGG | 0.441939 | 5.1:-79512351 | MS.gene38117:intron |
| TGCAGGCGTCGTAAGTGATA+AGG | 0.442938 | 5.1:+79513929 | None:intergenic |
| TGGTTACCTTGTTGATCCAT+TGG | 0.445990 | 5.1:+79515690 | None:intergenic |
| AAGGTAAGAAATTGGAATCC+TGG | 0.447464 | 5.1:+79512480 | None:intergenic |
| ACATGTGGCTGTGGACTTGA+TGG | 0.447824 | 5.1:+79509863 | None:intergenic |
| GGCATCCTGTCTACCTGTCA+TGG | 0.449910 | 5.1:-79508876 | MS.gene38117:CDS |
| GATCAATGTATAAGCAAGTT+GGG | 0.451761 | 5.1:-79513334 | MS.gene38117:CDS |
| GGCTAAATGGGCCATGGAAA+TGG | 0.453209 | 5.1:-79511692 | MS.gene38117:CDS |
| AACAAATGACACAGGTTCCA+TGG | 0.454278 | 5.1:-79509484 | MS.gene38117:intron |
| TAGGCTTGAGTTTCCACAAC+AGG | 0.455044 | 5.1:+79511771 | None:intergenic |
| ATGAAGTGGTAATCAATAGA+TGG | 0.456403 | 5.1:-79509382 | MS.gene38117:CDS |
| TATATGTAGAAATAAGTAGA+TGG | 0.465515 | 5.1:+79507995 | None:intergenic |
| ATCTCCCATGACAGGTAGAC+AGG | 0.466496 | 5.1:+79508871 | None:intergenic |
| AGCAGCAGGATAGGAGGTCT+TGG | 0.466639 | 5.1:-79514801 | MS.gene38117:CDS |
| AACTCCAACCAAGGACTGCC+TGG | 0.468493 | 5.1:-79511462 | MS.gene38117:CDS |
| GTACTGCTGGAAGAGGGGTT+CGG | 0.469467 | 5.1:-79514957 | MS.gene38117:CDS |
| GCAGGCGTCGTAAGTGATAA+GGG | 0.470911 | 5.1:+79513930 | None:intergenic |
| TTCCTTGTACTACCTTCAGT+TGG | 0.472513 | 5.1:+79513684 | None:intergenic |
| TTGTTTGGAGAGCAAATGAA+TGG | 0.472679 | 5.1:-79508842 | MS.gene38117:CDS |
| TAGCAATATGTCGTGGATTG+TGG | 0.475941 | 5.1:-79508504 | MS.gene38117:CDS |
| AGCAATATGTCGTGGATTGT+GGG | 0.476986 | 5.1:-79508503 | MS.gene38117:CDS |
| CTCAAGACAAAGAAGGTTGT+GGG | 0.479223 | 5.1:-79513642 | MS.gene38117:CDS |
| GTCCATTTGGTAACTTTCTG+AGG | 0.479994 | 5.1:+79510343 | None:intergenic |
| AAGTTGGGATGGAGTACGTC+AGG | 0.485061 | 5.1:-79513319 | MS.gene38117:CDS |
| GTTTCATCCCTTGTGAAAAG+TGG | 0.486018 | 5.1:-79513293 | MS.gene38117:CDS |
| TCCAAATACAAGGAGTATTG+AGG | 0.487212 | 5.1:+79509359 | None:intergenic |
| CCGATTCATATGCTAAATTG+AGG | 0.487243 | 5.1:-79511635 | MS.gene38117:intron |
| ACCCTCCAACAATATATCAT+AGG | 0.489559 | 5.1:+79511752 | None:intergenic |
| AGATGGTAATGCTGTCCATT+TGG | 0.491575 | 5.1:+79510330 | None:intergenic |
| GTTTCTAAAAGATGAGTGTC+TGG | 0.492440 | 5.1:-79513857 | MS.gene38117:CDS |
| AGCTCATTCACATGTGGCTG+TGG | 0.493960 | 5.1:+79509854 | None:intergenic |
| TGGAAGACATCCTAAATTCA+TGG | 0.495445 | 5.1:-79508898 | MS.gene38117:CDS |
| TCATGTTTCAGTTCTGTGCA+GGG | 0.496350 | 5.1:-79509683 | MS.gene38117:intron |
| AAATGACTCAGCAGCAGGAT+AGG | 0.498541 | 5.1:-79514810 | MS.gene38117:CDS |
| CGAAAACGAAGAAGATGAAA+GGG | 0.499383 | 5.1:-79515220 | MS.gene38117:CDS |
| CCTCAATTTAGCATATGAAT+CGG | 0.500851 | 5.1:+79511635 | None:intergenic |
| AAGAGGCTGTACTGAGGCCC+CGG | 0.501987 | 5.1:-79513881 | MS.gene38117:CDS |
| GGAAGTGAAATTGGTACTGC+TGG | 0.503174 | 5.1:-79514970 | MS.gene38117:CDS |
| AGGCAGTCCATGGTGAAGCC+AGG | 0.503776 | 5.1:-79512498 | MS.gene38117:CDS |
| GTTGCGAAAAGAGGTGATCT+AGG | 0.504571 | 5.1:+79515426 | None:intergenic |
| ACAACCTTCTTTGTCTTGAG+AGG | 0.505297 | 5.1:+79513645 | None:intergenic |
| TGCCTCAGAAAGTTACCAAA+TGG | 0.505968 | 5.1:-79510345 | MS.gene38117:CDS |
| TTTGGTATGCTATCTTTCAA+AGG | 0.506151 | 5.1:+79509143 | None:intergenic |
| TTTGTTTCACAATTACATCA+TGG | 0.508017 | 5.1:-79509642 | MS.gene38117:CDS |
| ATGACACAGGTTCCATGGGC+TGG | 0.508635 | 5.1:-79509479 | MS.gene38117:intron |
| TCGTCTATGCCTGCAAGCAT+GGG | 0.511245 | 5.1:-79513905 | MS.gene38117:CDS |
| TCAAGCCTATGATATATTGT+TGG | 0.513388 | 5.1:-79511757 | MS.gene38117:CDS |
| TGGTGAAGTGGAATGATTTG+TGG | 0.516170 | 5.1:+79509451 | None:intergenic |
| TATTGCTATGAAGATTTGGC+TGG | 0.516781 | 5.1:+79508519 | None:intergenic |
| TCTCAAGACAAAGAAGGTTG+TGG | 0.517514 | 5.1:-79513643 | MS.gene38117:CDS |
| GAAATTGGTACTGCTGGAAG+AGG | 0.520455 | 5.1:-79514964 | MS.gene38117:CDS |
| CCCTTCCTCAAAATTCCACT+AGG | 0.520908 | 5.1:+79515105 | None:intergenic |
| TCACTCTCAGTGACAGAAGA+AGG | 0.521728 | 5.1:-79513248 | MS.gene38117:intron |
| GAGTAAGATTATTATTGGAA+AGG | 0.521775 | 5.1:+79515400 | None:intergenic |
| AAATGAATCAGAGTCATGTT+CGG | 0.522569 | 5.1:-79513033 | MS.gene38117:CDS |
| TCATCGGTCTCAGCAGCAGC+AGG | 0.523051 | 5.1:+79515243 | None:intergenic |
| TCACTTCTGGCCTTCATTAG+GGG | 0.524637 | 5.1:+79511416 | None:intergenic |
| GAAAGGGTTGTTGCGAAAAG+AGG | 0.525261 | 5.1:+79515417 | None:intergenic |
| TTGTACTTCCAATTGAGAGC+TGG | 0.525299 | 5.1:+79512284 | None:intergenic |
| AGATATTGCAAGTGTGGAGG+AGG | 0.526974 | 5.1:+79514388 | None:intergenic |
| GGATCAATGTATAAGCAAGT+TGG | 0.527369 | 5.1:-79513335 | MS.gene38117:CDS |
| TCGTGGATTGTGGGACAGAA+TGG | 0.528693 | 5.1:-79508494 | MS.gene38117:CDS |
| AGCCTATGATATATTGTTGG+AGG | 0.530615 | 5.1:-79511754 | MS.gene38117:CDS |
| TTCAGTTTCCCATTGAGCCA+AGG | 0.531016 | 5.1:-79512556 | MS.gene38117:intron |
| CTACTGTAGACTTGTAGAGC+AGG | 0.532410 | 5.1:+79510696 | None:intergenic |
| AGCTCCAGGCAGTCCTTGGT+TGG | 0.532583 | 5.1:+79511458 | None:intergenic |
| AACAACCATAATACAATCCA+TGG | 0.534702 | 5.1:-79510236 | MS.gene38117:CDS |
| TTAGCCGCAAGTTTCGGGAG+TGG | 0.537146 | 5.1:+79511709 | None:intergenic |
| GTAAGTGATAAGGGTTTGCC+AGG | 0.537868 | 5.1:+79513939 | None:intergenic |
| CTTGCTTATACATTGATCCT+CGG | 0.538232 | 5.1:+79513339 | None:intergenic |
| TCTTTCTATGCCCTGTGTAG+AGG | 0.538250 | 5.1:+79514417 | None:intergenic |
| TACACAGGGCATAGAAAGAC+AGG | 0.540262 | 5.1:-79514413 | MS.gene38117:CDS |
| AGTTGGATCAAACAATGCAT+TGG | 0.548129 | 5.1:+79513074 | None:intergenic |
| ACGAAAACGAAGAAGATGAA+AGG | 0.548335 | 5.1:-79515221 | MS.gene38117:CDS |
| TCAGTTTCCCATTGAGCCAA+GGG | 0.548372 | 5.1:-79512555 | MS.gene38117:intron |
| GGTAAAGACCTCATGAAGGT+TGG | 0.548390 | 5.1:+79508540 | None:intergenic |
| TGTAGAGCAGGATGTAAAGC+TGG | 0.549874 | 5.1:+79510708 | None:intergenic |
| AAAAGAGGTGATCTAGGAAG+AGG | 0.550795 | 5.1:+79515432 | None:intergenic |
| TGTCTTCCACTCTACAATGT+AGG | 0.551082 | 5.1:+79508912 | None:intergenic |
| TTGCAGGCATAGACGAATGC+AGG | 0.551829 | 5.1:+79513912 | None:intergenic |
| GGTCTCAGCAGCAGCAGGAC+AGG | 0.552413 | 5.1:+79515248 | None:intergenic |
| TTTCTCAGCAAATGGTGAAG+TGG | 0.552861 | 5.1:+79509439 | None:intergenic |
| AAGTGGTATACAGTCTATGA+AGG | 0.554143 | 5.1:-79513276 | MS.gene38117:CDS |
| GAGACTGATGAATTTGTGTC+GGG | 0.554425 | 5.1:-79510368 | MS.gene38117:CDS |
| AGAAGTCCAAGATTCTAAGA+AGG | 0.555902 | 5.1:-79512518 | MS.gene38117:CDS |
| TTGAGATATTGCAAGTGTGG+AGG | 0.557086 | 5.1:+79514385 | None:intergenic |
| GTTGATGGTGAAGGTGATGT+CGG | 0.557464 | 5.1:-79514868 | MS.gene38117:CDS |
| CCTATATTTGTTGATGGTGA+AGG | 0.557712 | 5.1:-79514877 | MS.gene38117:CDS |
| AAATGATCGGTTAAACCTGT+TGG | 0.559634 | 5.1:+79510756 | None:intergenic |
| GTAACTCTTTCACAAGCTCC+AGG | 0.560180 | 5.1:+79511444 | None:intergenic |
| GGCTGTGGCAAATATTGAAA+GGG | 0.560699 | 5.1:-79509210 | MS.gene38117:CDS |
| TGGATCTTGCTACGCTCTTG+GGG | 0.560823 | 5.1:-79508288 | MS.gene38117:intron |
| GTTACTTGATCCCCTAATGA+AGG | 0.563068 | 5.1:-79511426 | MS.gene38117:CDS |
| CGATGAAATGACTCAGCAGC+AGG | 0.563082 | 5.1:-79514815 | MS.gene38117:CDS |
| CTTCAGGTATGCCGTTGAGA+TGG | 0.565249 | 5.1:+79510313 | None:intergenic |
| GAGAAGCAGAAGTTCGTGAA+AGG | 0.567985 | 5.1:-79508600 | MS.gene38117:CDS |
| AAATTGGTACTGCTGGAAGA+GGG | 0.568372 | 5.1:-79514963 | MS.gene38117:CDS |
| AATGTATAAGCAAGTTGGGA+TGG | 0.569458 | 5.1:-79513330 | MS.gene38117:CDS |
| AATTCTAGAAGATTTACTGA+TGG | 0.569546 | 5.1:-79515039 | MS.gene38117:CDS |
| TGAGAACTTTCCTTTCTGCA+TGG | 0.569606 | 5.1:-79509889 | MS.gene38117:CDS |
| AGGCTGTGGCAAATATTGAA+AGG | 0.569983 | 5.1:-79509211 | MS.gene38117:CDS |
| ACAAATGACACAGGTTCCAT+GGG | 0.570078 | 5.1:-79509483 | MS.gene38117:intron |
| AGAGTGACAGAATTCGGTGG+TGG | 0.570925 | 5.1:-79512345 | MS.gene38117:CDS |
| AACTTCTTATCTCCCATGAC+AGG | 0.571486 | 5.1:+79508863 | None:intergenic |
| ACTGCAGAGTGCTCCTGTTG+TGG | 0.571685 | 5.1:-79511784 | MS.gene38117:intron |
| TGGATGAAACTGCACTCCAA+TGG | 0.572829 | 5.1:-79515706 | MS.gene38117:CDS |
| CAACTTAATCCAGTATGAAG+TGG | 0.574199 | 5.1:-79509396 | MS.gene38117:CDS |
| GTTGCAGTAGTCAAGATGCC+TGG | 0.575008 | 5.1:-79513957 | MS.gene38117:CDS |
| GATTCTGTGAATTGTGATGA+TGG | 0.575898 | 5.1:-79514769 | MS.gene38117:CDS |
| TCAAGAAACAACCTCTACAC+AGG | 0.577200 | 5.1:-79514428 | MS.gene38117:CDS |
| TATTCTACAGAACTATCTGC+AGG | 0.579462 | 5.1:-79510640 | MS.gene38117:intron |
| TTGAACGCGATCTCGAGTCA+TGG | 0.579995 | 5.1:-79509811 | MS.gene38117:CDS |
| TGCCTGCAAGCATGGGCAAG+AGG | 0.580416 | 5.1:-79513898 | MS.gene38117:CDS |
| TATACAAAGAAGAAAACTGA+AGG | 0.581707 | 5.1:-79513375 | MS.gene38117:CDS |
| AAGGTGTAGAAAACACATGA+TGG | 0.582937 | 5.1:-79510390 | MS.gene38117:CDS |
| ACAAATATAGGAGGAGCACT+TGG | 0.582954 | 5.1:+79514889 | None:intergenic |
| GGAAGACATCCTAAATTCAT+GGG | 0.584196 | 5.1:-79508897 | MS.gene38117:CDS |
| CGTGGATTGTGGGACAGAAT+GGG | 0.584754 | 5.1:-79508493 | MS.gene38117:CDS |
| GCATCCTGTCTACCTGTCAT+GGG | 0.587857 | 5.1:-79508875 | MS.gene38117:CDS |
| GAAAATAGAATATGGTACAA+TGG | 0.588488 | 5.1:-79508308 | MS.gene38117:CDS |
| CATGATGATAATGAATGTGT+TGG | 0.588840 | 5.1:-79512313 | MS.gene38117:CDS |
| TGCCTAATACTGTTGCTGAA+AGG | 0.589120 | 5.1:-79514714 | MS.gene38117:intron |
| GAGTGACAGAATTCGGTGGT+GGG | 0.589193 | 5.1:-79512344 | MS.gene38117:CDS |
| ATTGTGGGACAGAATGGGAC+AGG | 0.589891 | 5.1:-79508488 | MS.gene38117:intron |
| CTCAGTTAGAGGAGAGCGTG+TGG | 0.590106 | 5.1:+79515464 | None:intergenic |
| TTGATGGTGGCCATGCAGAA+AGG | 0.591303 | 5.1:+79509879 | None:intergenic |
| CATGATAATCTCCACTTCCA+GGG | 0.592137 | 5.1:+79512997 | None:intergenic |
| GGTTGTGGGGAAAATAAGAG+TGG | 0.592804 | 5.1:-79513628 | MS.gene38117:CDS |
| TGACTCAGCAGCAGGATAGG+AGG | 0.593992 | 5.1:-79514807 | MS.gene38117:CDS |
| GCATCTAACAACCATTTCCA+TGG | 0.594327 | 5.1:+79511681 | None:intergenic |
| CTACCAATAAAGCATCCCCT+TGG | 0.594424 | 5.1:+79512539 | None:intergenic |
| GAATGTAGCAACTCCAACCA+AGG | 0.598101 | 5.1:-79511471 | MS.gene38117:CDS |
| GCCTATGATATATTGTTGGA+GGG | 0.599388 | 5.1:-79511753 | MS.gene38117:CDS |
| GTGGGGAAAATAAGAGTGGA+AGG | 0.600347 | 5.1:-79513624 | MS.gene38117:intron |
| GATTCTAAGAAGGCAGTCCA+TGG | 0.600429 | 5.1:-79512508 | MS.gene38117:CDS |
| ACTTGCGGCTAAATGGGCCA+TGG | 0.602220 | 5.1:-79511698 | MS.gene38117:CDS |
| AGCAGGATGTAAAGCTGGCG+CGG | 0.602954 | 5.1:+79510713 | None:intergenic |
| TTTGTGGTTACTCCAGCCCA+TGG | 0.604020 | 5.1:+79509467 | None:intergenic |
| AGTGCCTCTCAAGACAAAGA+AGG | 0.604507 | 5.1:-79513649 | MS.gene38117:CDS |
| AGCCAACTGAAGGTAGTACA+AGG | 0.604967 | 5.1:-79513686 | MS.gene38117:CDS |
| TTGGAATCCTGGCTTCACCA+TGG | 0.605696 | 5.1:+79512491 | None:intergenic |
| GGAGACTGATGAATTTGTGT+CGG | 0.611838 | 5.1:-79510369 | MS.gene38117:CDS |
| CATTTCTTATAGAAATACAA+AGG | 0.614859 | 5.1:+79510282 | None:intergenic |
| AGATGCTAGACCAAAATGAT+CGG | 0.615442 | 5.1:+79510743 | None:intergenic |
| GGTGATGTCGGTTATTCGGA+AGG | 0.617182 | 5.1:-79514856 | MS.gene38117:CDS |
| ATCTTCATAGCAATATGTCG+TGG | 0.620851 | 5.1:-79508511 | MS.gene38117:CDS |
| GTTTCCACTCCCGAAACTTG+CGG | 0.622116 | 5.1:-79511713 | MS.gene38117:CDS |
| GGCTGGTAAAGACCTCATGA+AGG | 0.622315 | 5.1:+79508536 | None:intergenic |
| CGGTTATTCGGAAGGATCCG+TGG | 0.624271 | 5.1:-79514848 | MS.gene38117:CDS |
| GAGGAAACGAGAGAAGCAGA+TGG | 0.624705 | 5.1:-79508622 | MS.gene38117:CDS |
| CTTCATCTCCAACCTTCATG+AGG | 0.625205 | 5.1:-79508548 | MS.gene38117:CDS |
| GAAGTGAGAGAAGTCTGACT+AGG | 0.628633 | 5.1:-79511400 | MS.gene38117:CDS |
| CGAGGTATAAAGCCAACTGA+AGG | 0.628927 | 5.1:-79513696 | MS.gene38117:CDS |
| CAAGAAACAACCTCTACACA+GGG | 0.629450 | 5.1:-79514427 | MS.gene38117:CDS |
| CCTAAACCCCTAAAACCTAG+TGG | 0.630048 | 5.1:-79515120 | MS.gene38117:CDS |
| TCAGTTGGCTTTATACCTCG+AGG | 0.631132 | 5.1:+79513699 | None:intergenic |
| AATTGCACAATGTTATGATG+AGG | 0.632254 | 5.1:-79515175 | MS.gene38117:CDS |
| TGTGGCTGTGGACTTGATGG+TGG | 0.632595 | 5.1:+79509866 | None:intergenic |
| TCACCATCAACAAATATAGG+AGG | 0.635308 | 5.1:+79514880 | None:intergenic |
| GAGAAGTCTGACTAGGCAAG+AGG | 0.636214 | 5.1:-79511393 | MS.gene38117:intron |
| GTATCTGGTTCTCAGTAACA+CGG | 0.636684 | 5.1:+79508814 | None:intergenic |
| TTATTGAGATATTGCAAGTG+TGG | 0.638514 | 5.1:+79514382 | None:intergenic |
| ATACAAAGAAGAAAACTGAA+GGG | 0.639387 | 5.1:-79513374 | MS.gene38117:CDS |
| CAGTTTCCCATTGAGCCAAG+GGG | 0.639439 | 5.1:-79512554 | MS.gene38117:CDS |
| CGAGCTTCAATCACTGAGCG+AGG | 0.647220 | 5.1:+79508055 | None:intergenic |
| TGATGTCCTACATTGTAGAG+TGG | 0.648648 | 5.1:-79508918 | MS.gene38117:CDS |
| TGTTTCAGTTCTGTGCAGGG+AGG | 0.649450 | 5.1:-79509680 | MS.gene38117:intron |
| GTGAATTGTGATGATGGAGG+AGG | 0.651967 | 5.1:-79514763 | MS.gene38117:CDS |
| GAGTTCTTGTTGCAACCTCG+AGG | 0.652321 | 5.1:-79513714 | MS.gene38117:CDS |
| TATTCTTGAACACCATCAAG+AGG | 0.652692 | 5.1:-79508946 | MS.gene38117:CDS |
| ATTGGAAGTACAATGACAAG+TGG | 0.653819 | 5.1:-79512274 | MS.gene38117:CDS |
| CAGAAGAAAATGACTCCATG+TGG | 0.655141 | 5.1:-79514991 | MS.gene38117:CDS |
| TTCATCGACTTGATTCGCCA+CGG | 0.655644 | 5.1:+79514831 | None:intergenic |
| AATTGGTACTGCTGGAAGAG+GGG | 0.656682 | 5.1:-79514962 | MS.gene38117:CDS |
| ACATGTGAATGAGCTTCTAG+TGG | 0.657596 | 5.1:-79509846 | MS.gene38117:CDS |
| TCAAGACAAAGAAGGTTGTG+GGG | 0.665374 | 5.1:-79513641 | MS.gene38117:CDS |
| GGACAGCATTACCATCTCAA+CGG | 0.666424 | 5.1:-79510324 | MS.gene38117:CDS |
| GTACCAATTTCACTTCCACA+TGG | 0.670567 | 5.1:+79514976 | None:intergenic |
| ACTAGAAGCTCATTCACATG+TGG | 0.678399 | 5.1:+79509848 | None:intergenic |
| TCTGTGAATTGTGATGATGG+AGG | 0.678617 | 5.1:-79514766 | MS.gene38117:CDS |
| GCTTCAATCACTGAGCGAGG+AGG | 0.678724 | 5.1:+79508058 | None:intergenic |
| TTCAAGGTAATAAGAGCACA+CGG | 0.684888 | 5.1:-79508660 | MS.gene38117:CDS |
| GATCGTTGAATCCGAAAGCG+AGG | 0.685240 | 5.1:+79515319 | None:intergenic |
| TGCAGAGTGACAGAATTCGG+TGG | 0.714678 | 5.1:-79512348 | MS.gene38117:intron |
| ATGGGCAAGAGGCTGTACTG+AGG | 0.720091 | 5.1:-79513887 | MS.gene38117:CDS |
| TGCACTCCAATGGATCAACA+AGG | 0.722010 | 5.1:-79515696 | MS.gene38117:intron |
| CCGAAAGCGAGGTTACTACG+AGG | 0.776363 | 5.1:+79515330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 79507994 | 79515744 | 79507994 | ID=MS.gene38117 |
| chr5.1 | mRNA | 79507994 | 79515744 | 79507994 | ID=MS.gene38117.t1;Parent=MS.gene38117 |
| chr5.1 | exon | 79515697 | 79515744 | 79515697 | ID=MS.gene38117.t1.exon1;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79515697 | 79515744 | 79515697 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79514715 | 79515520 | 79514715 | ID=MS.gene38117.t1.exon2;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79514715 | 79515520 | 79514715 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79514379 | 79514450 | 79514379 | ID=MS.gene38117.t1.exon3;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79514379 | 79514450 | 79514379 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79513838 | 79513981 | 79513838 | ID=MS.gene38117.t1.exon4;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79513838 | 79513981 | 79513838 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79513625 | 79513743 | 79513625 | ID=MS.gene38117.t1.exon5;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79513625 | 79513743 | 79513625 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79513249 | 79513413 | 79513249 | ID=MS.gene38117.t1.exon6;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79513249 | 79513413 | 79513249 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79512993 | 79513098 | 79512993 | ID=MS.gene38117.t1.exon7;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79512993 | 79513098 | 79512993 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79512468 | 79512573 | 79512468 | ID=MS.gene38117.t1.exon8;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79512468 | 79512573 | 79512468 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79512255 | 79512365 | 79512255 | ID=MS.gene38117.t1.exon9;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79512255 | 79512365 | 79512255 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79511636 | 79511799 | 79511636 | ID=MS.gene38117.t1.exon10;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79511636 | 79511799 | 79511636 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79511394 | 79511511 | 79511394 | ID=MS.gene38117.t1.exon11;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79511394 | 79511511 | 79511394 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79510641 | 79510865 | 79510641 | ID=MS.gene38117.t1.exon12;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79510641 | 79510865 | 79510641 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79510218 | 79510426 | 79510218 | ID=MS.gene38117.t1.exon13;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79510218 | 79510426 | 79510218 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79509803 | 79509970 | 79509803 | ID=MS.gene38117.t1.exon14;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79509803 | 79509970 | 79509803 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79509589 | 79509694 | 79509589 | ID=MS.gene38117.t1.exon15;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79509589 | 79509694 | 79509589 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79509355 | 79509492 | 79509355 | ID=MS.gene38117.t1.exon16;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79509355 | 79509492 | 79509355 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79509073 | 79509231 | 79509073 | ID=MS.gene38117.t1.exon17;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79509073 | 79509231 | 79509073 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79508772 | 79508975 | 79508772 | ID=MS.gene38117.t1.exon18;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79508772 | 79508975 | 79508772 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79508489 | 79508683 | 79508489 | ID=MS.gene38117.t1.exon19;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79508489 | 79508683 | 79508489 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79508289 | 79508360 | 79508289 | ID=MS.gene38117.t1.exon20;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79508289 | 79508360 | 79508289 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| chr5.1 | exon | 79507994 | 79508152 | 79507994 | ID=MS.gene38117.t1.exon21;Parent=MS.gene38117.t1 |
| chr5.1 | CDS | 79507994 | 79508152 | 79507994 | ID=cds.MS.gene38117.t1;Parent=MS.gene38117.t1 |
| Gene Sequence |
| Protein sequence |
