AlfalfaGEDB | MS.gene38129

M. sativa cultivar XinJiangDaYe / MS.gene38129

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38129.t1	RHN58171.1	97.3	111	3	0	16	126	110	220	3.70E-49	204.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38129.t1	G7K0M7	97.3	111	3	0	16	126	95	205	2.7e-49	204.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene38129	0.807591	4.69E-50	-1.69E-46
MS.gene049711	MS.gene38129	0.80861	2.85E-50	-1.69E-46
MS.gene051719	MS.gene38129	0.808689	2.74E-50	-1.69E-46
MS.gene051720	MS.gene38129	0.821058	4.94E-53	-1.69E-46
MS.gene053536	MS.gene38129	0.808822	2.56E-50	-1.69E-46
MS.gene053538	MS.gene38129	0.810368	1.19E-50	-1.69E-46
MS.gene055537	MS.gene38129	0.804175	2.45E-49	-1.69E-46
MS.gene05894	MS.gene38129	0.81899	1.47E-52	-1.69E-46
MS.gene059424	MS.gene38129	0.802417	5.67E-49	-1.69E-46
MS.gene060519	MS.gene38129	0.816572	5.16E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38129.t1	MTR_5g098480	97.297	111	3	0	16	126	95	205	5.24e-71	211
MS.gene38129.t1	MTR_3g082780	54.464	112	34	4	19	126	39	137	2.44e-18	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38129.t1	AT2G04480	47.674	86	37	1	41	126	170	247	3.93e-17	74.7
MS.gene38129.t1	AT5G35870	39.815	108	50	4	22	126	101	196	9.08e-14	65.1

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Find 15 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAACCAGAAGGTAAC+TGG	0.350877	5.1:+79154462	None:intergenic
AAGTTGACAAATGATCTTCT+TGG	0.365749	5.1:+79154236	None:intergenic
ACTTCCAAGTGGAAACTATG+TGG	0.636002	5.1:-79154134	MS.gene38129:CDS
AGAACTCAATGAAGTGAATG+AGG	0.560804	5.1:-79154008	MS.gene38129:CDS
AGATCATTTGTCAACTTCTG+AGG	0.517436	5.1:-79154230	MS.gene38129:CDS
ATAGAGATTGATATATCTAT+GGG	0.504620	5.1:-79153974	MS.gene38129:CDS
ATATCCACATAGTTTCCACT+TGG	0.606905	5.1:+79154130	None:intergenic
ATTGAAATTGCACTTCCAAG+TGG	0.592923	5.1:-79154145	MS.gene38129:CDS
CATAGCCATGATTACTCAGA+TGG	0.516223	5.1:-79154193	MS.gene38129:CDS
GATCATTTGTCAACTTCTGA+GGG	0.561459	5.1:-79154229	MS.gene38129:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGACAAATGATCTTCT+TGG	+	chr5.1:79154201-79154220	None:intergenic	30.0%
TTTCAGTCAACAAAGTCTAA+TGG	-	chr5.1:79154393-79154412	MS.gene38129:intron	30.0%
AAAAACCAAATCCAACCAGA+AGG	+	chr5.1:79153982-79154001	None:intergenic	35.0%
AGAACTCAATGAAGTGAATG+AGG	-	chr5.1:79154426-79154445	MS.gene38129:intron	35.0%
AGATCATTTGTCAACTTCTG+AGG	-	chr5.1:79154204-79154223	MS.gene38129:CDS	35.0%
ATATCCACATAGTTTCCACT+TGG	+	chr5.1:79154307-79154326	None:intergenic	35.0%
ATCTTTGCTCTACACATCTA+TGG	-	chr5.1:79154003-79154022	MS.gene38129:CDS	35.0%
ATTGAAATTGCACTTCCAAG+TGG	-	chr5.1:79154289-79154308	MS.gene38129:intron	35.0%
GATCATTTGTCAACTTCTGA+GGG	-	chr5.1:79154205-79154224	MS.gene38129:CDS	35.0%
TTCAAACCTTGAGTACTTGA+TGG	+	chr5.1:79154488-79154507	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	79153937	79154519	79153937	ID=MS.gene38129
chr5.1	mRNA	79153937	79154519	79153937	ID=MS.gene38129.t1;Parent=MS.gene38129
chr5.1	exon	79154471	79154519	79154471	ID=MS.gene38129.t1.exon1;Parent=MS.gene38129.t1
chr5.1	CDS	79154471	79154519	79154471	ID=cds.MS.gene38129.t1;Parent=MS.gene38129.t1
chr5.1	exon	79153937	79154268	79153937	ID=MS.gene38129.t1.exon2;Parent=MS.gene38129.t1
chr5.1	CDS	79153937	79154268	79153937	ID=cds.MS.gene38129.t1;Parent=MS.gene38129.t1

Gene Sequence

>MS.gene38129

ATGGATGGCTCTTTTTGCTTTATTGCTTCTTTTTTCCAGTTACCTTCTGGTTGGATTTGGTTTTTTATCTTTGCTCTACACATCTATGGTAGTAATTTTTTCTACTTTTCTCTATATTATTATTGCATCAAAGCAAAAAAAAGTAAATGTTGTTGATAAATTAGTAGAAGAAAAGTTTCTGAATTCAGATGATGAGAAAAGTAATGAAGCACATGAAGCACAAGAAGAAGAAGTTAATATTGATGGATCAGAAAGTGAAAGCCAAGAAGATCATTTGTCAACTTCTGAGGGATCTGAAGTAGATCATAGCCATGATTACTCAGATGGATCAATTTCTGATGAAGAAAGTCTCATTGAAATTGCACTTCCAAGTGGAAACTATGTGGATATGCAGAAAGATGAATCAGATTACTATAGTTTGCAGCAGAAGAAAAAGAAGTTATTTGGTGATGCACTTTTCAGTCAACAAAGTCTAATGGAGTTGTTATCAGAACTCAATGAAGTGAATGAGGAAGAAAACTTTATAGAGATTGATATATCTATGGGATCCATCAAGTACTCAAGGTTTGAAATTGAAGCATGA

Protein sequence

>MS.gene38129.t1

MDGSFCFIASFFQLPSESESQEDHLSTSEGSEVDHSHDYSDGSISDEESLIEIALPSGNYVDMQKDESDYYSLQQKKKKLFGDALFSQQSLMELLSELNEVNEEENFIEIDISMGSIKYSRFEIEA