Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38134.t1 | TYH09258.1 | 69.5 | 187 | 53 | 1 | 29 | 211 | 197 | 383 | 5.10E-59 | 237.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38134.t1 | Q6F2Y7 | 67.7 | 186 | 56 | 1 | 29 | 210 | 199 | 384 | 2.6e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38134.t1 | A0A0E0PQ20 | 54.7 | 256 | 64 | 2 | 7 | 210 | 74 | 329 | 1.6e-59 | 238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050611 | MS.gene38134 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene38134 | 0.805197 | 1.50E-49 | -1.69E-46 |
| MS.gene05329 | MS.gene38134 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene053646 | MS.gene38134 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene38134 | 0.815688 | 8.13E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene38134 | 0.833447 | 5.31E-56 | -1.69E-46 |
| MS.gene05435 | MS.gene38134 | 0.820992 | 5.12E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38134.t1 | MTR_4g109450 | 75.936 | 187 | 41 | 1 | 29 | 211 | 197 | 383 | 2.27e-86 | 272 |
| MS.gene38134.t1 | MTR_4g109450 | 75.936 | 187 | 41 | 1 | 29 | 211 | 197 | 383 | 4.46e-86 | 272 |
| MS.gene38134.t1 | MTR_7g028970 | 69.519 | 187 | 53 | 1 | 29 | 211 | 197 | 383 | 4.61e-78 | 251 |
| MS.gene38134.t1 | MTR_7g012820 | 59.893 | 187 | 71 | 1 | 29 | 211 | 207 | 393 | 1.06e-66 | 220 |
| MS.gene38134.t1 | MTR_7g012820 | 59.893 | 187 | 71 | 1 | 29 | 211 | 278 | 464 | 1.29e-66 | 221 |
| MS.gene38134.t1 | MTR_6g013660 | 58.824 | 187 | 73 | 1 | 29 | 211 | 274 | 460 | 3.44e-65 | 216 |
| MS.gene38134.t1 | MTR_3g106160 | 57.219 | 187 | 76 | 1 | 29 | 211 | 286 | 472 | 1.54e-63 | 212 |
| MS.gene38134.t1 | MTR_3g498725 | 49.198 | 187 | 90 | 2 | 29 | 211 | 290 | 475 | 2.96e-53 | 183 |
| MS.gene38134.t1 | MTR_3g102830 | 49.733 | 187 | 89 | 2 | 29 | 211 | 295 | 480 | 3.29e-53 | 183 |
| MS.gene38134.t1 | MTR_8g100040 | 49.198 | 187 | 90 | 2 | 29 | 211 | 294 | 479 | 5.63e-53 | 182 |
| MS.gene38134.t1 | MTR_3g098310 | 40.314 | 191 | 104 | 3 | 29 | 210 | 333 | 522 | 6.04e-36 | 134 |
| MS.gene38134.t1 | MTR_3g098310 | 40.314 | 191 | 104 | 3 | 29 | 210 | 333 | 522 | 6.99e-36 | 133 |
| MS.gene38134.t1 | MTR_3g461000 | 36.508 | 189 | 114 | 3 | 27 | 211 | 205 | 391 | 2.12e-28 | 112 |
| MS.gene38134.t1 | MTR_6g048860 | 44.444 | 81 | 40 | 2 | 37 | 113 | 179 | 258 | 2.43e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38134.t1 | AT1G74310 | 71.658 | 187 | 49 | 1 | 29 | 211 | 197 | 383 | 1.07e-82 | 262 |
| MS.gene38134.t1 | AT1G74310 | 71.658 | 187 | 49 | 1 | 29 | 211 | 197 | 383 | 5.21e-82 | 261 |
| MS.gene38134.t1 | AT4G14670 | 61.497 | 187 | 68 | 1 | 29 | 211 | 162 | 348 | 1.50e-69 | 223 |
| MS.gene38134.t1 | AT5G15450 | 60.428 | 187 | 70 | 1 | 29 | 211 | 272 | 458 | 3.58e-67 | 222 |
| MS.gene38134.t1 | AT2G25140 | 56.150 | 187 | 78 | 1 | 29 | 211 | 277 | 463 | 4.01e-61 | 205 |
| MS.gene38134.t1 | AT5G50920 | 49.198 | 187 | 90 | 2 | 29 | 211 | 292 | 477 | 1.27e-52 | 181 |
| MS.gene38134.t1 | AT3G48870 | 48.663 | 187 | 91 | 2 | 29 | 211 | 282 | 467 | 4.00e-52 | 180 |
| MS.gene38134.t1 | AT3G48870 | 48.663 | 187 | 91 | 2 | 29 | 211 | 313 | 498 | 4.73e-52 | 180 |
| MS.gene38134.t1 | AT3G48870 | 48.663 | 187 | 91 | 2 | 29 | 211 | 313 | 498 | 4.73e-52 | 180 |
| MS.gene38134.t1 | AT3G48870 | 48.663 | 187 | 91 | 2 | 29 | 211 | 313 | 498 | 4.73e-52 | 180 |
| MS.gene38134.t1 | AT5G51070 | 40.314 | 191 | 104 | 3 | 29 | 210 | 306 | 495 | 2.01e-33 | 126 |
| MS.gene38134.t1 | AT3G45450 | 34.940 | 166 | 93 | 3 | 24 | 187 | 166 | 318 | 5.96e-22 | 92.0 |
Find 48 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAATCTTGCTGTTGATT+TGG | 0.263142 | 5.1:-78892636 | MS.gene38134:CDS |
| GGTATCAGAAACAATAAGTT+TGG | 0.313980 | 5.1:+78892319 | None:intergenic |
| AAATCAACAGCAAGATTTCT+AGG | 0.316313 | 5.1:+78892638 | None:intergenic |
| ATTCATCTTGTTCTTAGATC+TGG | 0.330680 | 5.1:-78892497 | MS.gene38134:CDS |
| TAGTCCACGAAGGATACTTA+TGG | 0.348995 | 5.1:+78892298 | None:intergenic |
| TCTGTGTAGCCTTTGCCCTT+TGG | 0.360414 | 5.1:+78893222 | None:intergenic |
| TTGTAGGAGAACCAAGTGTT+AGG | 0.398382 | 5.1:-78892712 | MS.gene38134:intron |
| GATACGGGTGCAGTAGTTGC+CGG | 0.400106 | 5.1:-78892614 | MS.gene38134:CDS |
| GTAGTTGCCGGTGCTAAGTA+TGG | 0.402418 | 5.1:-78892602 | MS.gene38134:CDS |
| ATGGTGTTAGAATTCAAGAT+TGG | 0.404484 | 5.1:-78892253 | MS.gene38134:CDS |
| CAGCAACACTTGAGGAATAT+AGG | 0.409498 | 5.1:-78892397 | MS.gene38134:CDS |
| TTGTCTAGTCAGTGCATAAC+TGG | 0.416390 | 5.1:-78892209 | None:intergenic |
| AGAATATGAAGAGAGATTGA+AGG | 0.420776 | 5.1:-78892576 | MS.gene38134:CDS |
| TTATTTCAGAGGATAGTTAG+AGG | 0.437448 | 5.1:-78892668 | MS.gene38134:CDS |
| GTGCTTCTAGTTGCATAATC+TGG | 0.448175 | 5.1:+78893263 | None:intergenic |
| ATTTGAGAGGAGGTTTCAAC+AGG | 0.451749 | 5.1:-78892351 | MS.gene38134:CDS |
| GTTCTTAGATCTGGACGAAC+GGG | 0.469341 | 5.1:-78892488 | MS.gene38134:CDS |
| ATATAGGAAGTATGTTGAAA+AGG | 0.473627 | 5.1:-78892381 | MS.gene38134:CDS |
| GAGAGCTATGAGGGCGATCA+TGG | 0.475096 | 5.1:-78892272 | MS.gene38134:CDS |
| CTTGCTGTTGATTTGGATAC+GGG | 0.477054 | 5.1:-78892629 | MS.gene38134:CDS |
| TGATTGAGTTGGAATTTGAC+CGG | 0.480838 | 5.1:+78893292 | None:intergenic |
| TCTTGCTGTTGATTTGGATA+CGG | 0.482021 | 5.1:-78892630 | MS.gene38134:CDS |
| AGGAAAAGTGTTGTTGTTGA+AGG | 0.487141 | 5.1:-78892692 | MS.gene38134:CDS |
| TGGACGAACGGGAGGATCGA+TGG | 0.493742 | 5.1:-78892477 | MS.gene38134:CDS |
| TGGTGTTAGAATTCAAGATT+GGG | 0.503495 | 5.1:-78892252 | MS.gene38134:CDS |
| GGAAAAGTGTTGTTGTTGAA+GGG | 0.518606 | 5.1:-78892691 | MS.gene38134:CDS |
| AGCTGTCCACGAGCAAGCAT+TGG | 0.522301 | 5.1:+78892434 | None:intergenic |
| CTCTTGTCAATGTCATCCAA+AGG | 0.526294 | 5.1:-78893238 | MS.gene38134:CDS |
| TTCTTCTCCATACTTAGCAC+CGG | 0.539250 | 5.1:+78892595 | None:intergenic |
| CGTGGACAGCTTAGATGCAT+TGG | 0.540444 | 5.1:-78892422 | MS.gene38134:CDS |
| TTCAAACCAATGCTTGCTCG+TGG | 0.546102 | 5.1:-78892440 | MS.gene38134:CDS |
| ACCGCAATGGTATATTGTCC+CGG | 0.552447 | 5.1:-78893311 | None:intergenic |
| TTGTTGAAGGGTTATTTCAG+AGG | 0.553219 | 5.1:-78892679 | MS.gene38134:CDS |
| TCTTGTCAATGTCATCCAAA+GGG | 0.554827 | 5.1:-78893237 | MS.gene38134:CDS |
| GATACCATAAGTATCCTTCG+TGG | 0.560735 | 5.1:-78892302 | MS.gene38134:CDS |
| TCTGGTGGAGGTGATTGAGT+TGG | 0.561730 | 5.1:+78893281 | None:intergenic |
| AGGATGCAGCATTTGAGAGG+AGG | 0.568506 | 5.1:-78892361 | MS.gene38134:CDS |
| CTAGTTGCATAATCTGGTGG+AGG | 0.573867 | 5.1:+78893269 | None:intergenic |
| CTTCTAGTTGCATAATCTGG+TGG | 0.577816 | 5.1:+78893266 | None:intergenic |
| AAAAGGATGCAGCATTTGAG+AGG | 0.584513 | 5.1:-78892364 | MS.gene38134:CDS |
| TGGACTAAAAGAGAGCTATG+AGG | 0.585330 | 5.1:-78892282 | MS.gene38134:CDS |
| GGACTAAAAGAGAGCTATGA+GGG | 0.588633 | 5.1:-78892281 | MS.gene38134:CDS |
| CAATGTCATCCAAAGGGCAA+AGG | 0.607048 | 5.1:-78893231 | MS.gene38134:CDS |
| TGTTCTTAGATCTGGACGAA+CGG | 0.608057 | 5.1:-78892489 | MS.gene38134:CDS |
| CATTGGTGCAGCAACACTTG+AGG | 0.609175 | 5.1:-78892405 | MS.gene38134:CDS |
| GATTGAGTTGGAATTTGACC+GGG | 0.622165 | 5.1:+78893293 | None:intergenic |
| CTTAGATCTGGACGAACGGG+AGG | 0.624484 | 5.1:-78892485 | MS.gene38134:CDS |
| AAGGCTACACAGAAGTTGTG+TGG | 0.686150 | 5.1:-78893212 | MS.gene38134:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATTTAGAAAGAAG+TGG | + | chr5.1:78892556-78892575 | None:intergenic | 20.0% |
| !!! | AAATTTATTGTTCTTGGTTT+TGG | + | chr5.1:78892497-78892516 | None:intergenic | 20.0% |
| ! | AAGAACAATCATGTTCTTAT+AGG | + | chr5.1:78892739-78892758 | None:intergenic | 25.0% |
| ! | AAGAACAATCTTATTCTTGT+AGG | - | chr5.1:78892787-78892806 | MS.gene38134:intron | 25.0% |
| ! | TACAAGAATAAGATTGTTCT+TGG | + | chr5.1:78892788-78892807 | None:intergenic | 25.0% |
| ! | TATAAGAACATGATTGTTCT+TGG | - | chr5.1:78892738-78892757 | MS.gene38134:intron | 25.0% |
| ! | TTGACGAAATTTATTGTTCT+TGG | + | chr5.1:78892503-78892522 | None:intergenic | 25.0% |
| !! | ATATAGGAAGTATGTTGAAA+AGG | - | chr5.1:78893134-78893153 | MS.gene38134:intron | 25.0% |
| AAACAAATCACCAATTTGAG+AGG | + | chr5.1:78892377-78892396 | None:intergenic | 30.0% | |
| AAATCAACAGCAAGATTTCT+AGG | + | chr5.1:78892880-78892899 | None:intergenic | 30.0% | |
| AACAATCATGTTCTTATAGG+AGG | + | chr5.1:78892736-78892755 | None:intergenic | 30.0% | |
| AGAATATGAAGAGAGATTGA+AGG | - | chr5.1:78892939-78892958 | MS.gene38134:intron | 30.0% | |
| ATTCATCTTGTTCTTAGATC+TGG | - | chr5.1:78893018-78893037 | MS.gene38134:intron | 30.0% | |
| GGTATCAGAAACAATAAGTT+TGG | + | chr5.1:78893199-78893218 | None:intergenic | 30.0% | |
| TATCAATCTTGCTGATGTTA+GGG | + | chr5.1:78892646-78892665 | None:intergenic | 30.0% | |
| TTATTTCAGAGGATAGTTAG+AGG | - | chr5.1:78892847-78892866 | MS.gene38134:intron | 30.0% | |
| ! | ATGGTGTTAGAATTCAAGAT+TGG | - | chr5.1:78893262-78893281 | MS.gene38134:CDS | 30.0% |
| ! | TGGTGTTAGAATTCAAGATT+GGG | - | chr5.1:78893263-78893282 | MS.gene38134:CDS | 30.0% |
| !! | GAAAAAGTGTTGTTGTTGAA+GGG | + | chr5.1:78892701-78892720 | None:intergenic | 30.0% |
| !! | GAAGGAAATTTTGAAAGAAG+TGG | - | chr5.1:78892957-78892976 | MS.gene38134:intron | 30.0% |
| !! | TAGAAATCTTGCTGTTGATT+TGG | - | chr5.1:78892879-78892898 | MS.gene38134:intron | 30.0% |
| !!! | CAGGATGATCAATTAGTTTT+GGG | - | chr5.1:78892340-78892359 | MS.gene38134:CDS | 30.0% |
| AAAGAAGTGGAAAAAGCTGA+AGG | - | chr5.1:78892970-78892989 | MS.gene38134:intron | 35.0% | |
| CTAACATCAGCAAGATTGAT+AGG | - | chr5.1:78892645-78892664 | MS.gene38134:CDS | 35.0% | |
| CTATCAATCTTGCTGATGTT+AGG | + | chr5.1:78892647-78892666 | None:intergenic | 35.0% | |
| TCTTGTCAATGTCATCCAAA+GGG | - | chr5.1:78892278-78892297 | MS.gene38134:CDS | 35.0% | |
| TGATGTTAGGGTAGTTGATT+TGG | + | chr5.1:78892634-78892653 | None:intergenic | 35.0% | |
| TGCTTGAAGATTTGTCAAGA+AGG | + | chr5.1:78892765-78892784 | None:intergenic | 35.0% | |
| ! | ACAACACTTTTCCTAACACT+TGG | + | chr5.1:78892817-78892836 | None:intergenic | 35.0% |
| ! | TTGTTGAAGGGTTATTTCAG+AGG | - | chr5.1:78892836-78892855 | MS.gene38134:intron | 35.0% |
| !! | AGGAAAAGTGTTGTTGTTGA+AGG | - | chr5.1:78892823-78892842 | MS.gene38134:intron | 35.0% |
| !! | GCAGGATGATCAATTAGTTT+TGG | - | chr5.1:78892339-78892358 | MS.gene38134:CDS | 35.0% |
| !! | GGAAAAAGTGTTGTTGTTGA+AGG | + | chr5.1:78892702-78892721 | None:intergenic | 35.0% |
| !! | GGAAAAGTGTTGTTGTTGAA+GGG | - | chr5.1:78892824-78892843 | MS.gene38134:intron | 35.0% |
| !! | GGTGATTTGTTTAAACAAGC+TGG | - | chr5.1:78892385-78892404 | MS.gene38134:CDS | 35.0% |
| !! | TAGGGTAGTTGATTTGGATA+TGG | + | chr5.1:78892628-78892647 | None:intergenic | 35.0% |
| !! | TCTTGCTGTTGATTTGGATA+CGG | - | chr5.1:78892885-78892904 | MS.gene38134:intron | 35.0% |
| !! | TGATTGAGTTGGAATTTGAC+CGG | + | chr5.1:78892226-78892245 | None:intergenic | 35.0% |
| !!! | ACAACACTTTTTCCAACACA+TGG | - | chr5.1:78892708-78892727 | MS.gene38134:CDS | 35.0% |
| AAAAGGATGCAGCATTTGAG+AGG | - | chr5.1:78893151-78893170 | MS.gene38134:intron | 40.0% | |
| ATTCTCGATGCCTCTCAAAT+TGG | - | chr5.1:78892364-78892383 | MS.gene38134:CDS | 40.0% | |
| ATTTGAGAGGAGGTTTCAAC+AGG | - | chr5.1:78893164-78893183 | MS.gene38134:intron | 40.0% | |
| CAGCAACACTTGAGGAATAT+AGG | - | chr5.1:78893118-78893137 | MS.gene38134:intron | 40.0% | |
| CTCTTGTCAATGTCATCCAA+AGG | - | chr5.1:78892277-78892296 | MS.gene38134:CDS | 40.0% | |
| GATACCATAAGTATCCTTCG+TGG | - | chr5.1:78893213-78893232 | MS.gene38134:CDS | 40.0% | |
| GGACTAAAAGAGAGCTATGA+GGG | - | chr5.1:78893234-78893253 | MS.gene38134:CDS | 40.0% | |
| TAGTCCACGAAGGATACTTA+TGG | + | chr5.1:78893220-78893239 | None:intergenic | 40.0% | |
| TGGACTAAAAGAGAGCTATG+AGG | - | chr5.1:78893233-78893252 | MS.gene38134:CDS | 40.0% | |
| TGTTCTTAGATCTGGACGAA+CGG | - | chr5.1:78893026-78893045 | MS.gene38134:intron | 40.0% | |
| TTATAGGAGGAACCATGTGT+TGG | + | chr5.1:78892723-78892742 | None:intergenic | 40.0% | |
| TTCTTCTCCATACTTAGCAC+CGG | + | chr5.1:78892923-78892942 | None:intergenic | 40.0% | |
| TTGTAGGAGAACCAAGTGTT+AGG | - | chr5.1:78892803-78892822 | MS.gene38134:intron | 40.0% | |
| ! | AAGTGTTGTTGTTGAAGGGT+TGG | + | chr5.1:78892847-78892828 | None:intergenic | 40.0% |
| ! | CTTCTAGTTGCATAATCTGG+TGG | + | chr5.1:78892252-78892271 | None:intergenic | 40.0% |
| ! | GTGCTTCTAGTTGCATAATC+TGG | + | chr5.1:78892255-78892274 | None:intergenic | 40.0% |
| !! | CTTGCTGTTGATTTGGATAC+GGG | - | chr5.1:78892886-78892905 | MS.gene38134:intron | 40.0% |
| !! | GATTGAGTTGGAATTTGACC+GGG | + | chr5.1:78892225-78892244 | None:intergenic | 40.0% |
| AAGGCTACACAGAAGTTGTG+TGG | - | chr5.1:78892303-78892322 | MS.gene38134:CDS | 45.0% | |
| CAATGTCATCCAAAGGGCAA+AGG | - | chr5.1:78892284-78892303 | MS.gene38134:CDS | 45.0% | |
| CTAGTTGCATAATCTGGTGG+AGG | + | chr5.1:78892249-78892268 | None:intergenic | 45.0% | |
| GTTCTTAGATCTGGACGAAC+GGG | - | chr5.1:78893027-78893046 | MS.gene38134:intron | 45.0% | |
| TGTGGTGACACTCATTTAGC+AGG | - | chr5.1:78892321-78892340 | MS.gene38134:CDS | 45.0% | |
| TTCAAACCAATGCTTGCTCG+TGG | - | chr5.1:78893075-78893094 | MS.gene38134:intron | 45.0% | |
| TTGGCTCAGAGGATAGTTAG+AGG | + | chr5.1:78892678-78892697 | None:intergenic | 45.0% | |
| ! | AGCTCTCTTTTAGTCCACGA+AGG | + | chr5.1:78893230-78893249 | None:intergenic | 45.0% |
| !!! | GTTCTTGGTTTTGGTCGAAC+TGG | + | chr5.1:78892488-78892507 | None:intergenic | 45.0% |
| AAGCTGGTGTGCTTGCTTCA+TGG | - | chr5.1:78892401-78892420 | MS.gene38134:CDS | 50.0% | |
| AGCTGGTGTGCTTGCTTCAT+GGG | - | chr5.1:78892402-78892421 | MS.gene38134:CDS | 50.0% | |
| AGGATGCAGCATTTGAGAGG+AGG | - | chr5.1:78893154-78893173 | MS.gene38134:intron | 50.0% | |
| CATTGGTGCAGCAACACTTG+AGG | - | chr5.1:78893110-78893129 | MS.gene38134:intron | 50.0% | |
| CGTGGACAGCTTAGATGCAT+TGG | - | chr5.1:78893093-78893112 | MS.gene38134:intron | 50.0% | |
| TCTGGTGGAGGTGATTGAGT+TGG | + | chr5.1:78892237-78892256 | None:intergenic | 50.0% | |
| TCTGTGTAGCCTTTGCCCTT+TGG | + | chr5.1:78892296-78892315 | None:intergenic | 50.0% | |
| ! | GTAGTTGCCGGTGCTAAGTA+TGG | - | chr5.1:78892913-78892932 | MS.gene38134:intron | 50.0% |
| !! | TTGTTGAAGGGTTGGCTCAG+AGG | + | chr5.1:78892689-78892708 | None:intergenic | 50.0% |
| !!! | CTTGGTTTTGGTCGAACTGG+AGG | + | chr5.1:78892485-78892504 | None:intergenic | 50.0% |
| AGCTGTCCACGAGCAAGCAT+TGG | + | chr5.1:78893084-78893103 | None:intergenic | 55.0% | |
| CTTAGATCTGGACGAACGGG+AGG | - | chr5.1:78893030-78893049 | MS.gene38134:intron | 55.0% | |
| GAGAGCTATGAGGGCGATCA+TGG | - | chr5.1:78893243-78893262 | MS.gene38134:CDS | 55.0% | |
| GATACGGGTGCAGTAGTTGC+CGG | - | chr5.1:78892901-78892920 | MS.gene38134:intron | 55.0% | |
| TGGACGAACGGGAGGATCGA+TGG | - | chr5.1:78893038-78893057 | MS.gene38134:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 78892210 | 78893327 | 78892210 | ID=MS.gene38134 |
| chr5.1 | mRNA | 78892210 | 78893327 | 78892210 | ID=MS.gene38134.t1;Parent=MS.gene38134 |
| chr5.1 | exon | 78893213 | 78893327 | 78893213 | ID=MS.gene38134.t1.exon1;Parent=MS.gene38134.t1 |
| chr5.1 | CDS | 78893213 | 78893327 | 78893213 | ID=cds.MS.gene38134.t1;Parent=MS.gene38134.t1 |
| chr5.1 | exon | 78892210 | 78892728 | 78892210 | ID=MS.gene38134.t1.exon2;Parent=MS.gene38134.t1 |
| chr5.1 | CDS | 78892210 | 78892728 | 78892210 | ID=cds.MS.gene38134.t1;Parent=MS.gene38134.t1 |
| Gene Sequence |
| Protein sequence |
