Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38189.t1 | XP_003617979.1 | 98.9 | 370 | 4 | 0 | 1 | 370 | 73 | 442 | 1.90E-210 | 741.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38189.t1 | Q9SJ74 | 70.2 | 366 | 107 | 2 | 1 | 365 | 38 | 402 | 9.1e-153 | 541.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38189.t1 | G7K4W5 | 98.9 | 370 | 4 | 0 | 1 | 370 | 73 | 442 | 1.4e-210 | 741.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012709 | MS.gene38189 | PPI |
| MS.gene96299 | MS.gene38189 | PPI |
| MS.gene95132 | MS.gene38189 | PPI |
| MS.gene042118 | MS.gene38189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38189.t1 | MTR_5g097620 | 98.919 | 370 | 4 | 0 | 1 | 370 | 73 | 442 | 0.0 | 752 |
| MS.gene38189.t1 | MTR_8g009880 | 85.637 | 369 | 49 | 3 | 1 | 369 | 36 | 400 | 0.0 | 652 |
| MS.gene38189.t1 | MTR_4g133620 | 34.060 | 367 | 219 | 6 | 2 | 360 | 41 | 392 | 5.09e-65 | 212 |
| MS.gene38189.t1 | MTR_2g026080 | 34.146 | 369 | 218 | 9 | 2 | 362 | 45 | 396 | 1.82e-61 | 202 |
| MS.gene38189.t1 | MTR_7g051910 | 30.295 | 373 | 239 | 4 | 1 | 370 | 40 | 394 | 2.19e-59 | 197 |
| MS.gene38189.t1 | MTR_5g093520 | 34.844 | 353 | 199 | 12 | 3 | 342 | 54 | 388 | 9.51e-56 | 188 |
| MS.gene38189.t1 | MTR_3g058510 | 30.791 | 354 | 221 | 8 | 2 | 348 | 42 | 378 | 7.26e-51 | 174 |
| MS.gene38189.t1 | MTR_8g028075 | 29.630 | 243 | 158 | 6 | 102 | 339 | 319 | 553 | 7.91e-29 | 117 |
| MS.gene38189.t1 | MTR_7g117375 | 34.123 | 211 | 129 | 5 | 143 | 351 | 184 | 386 | 1.36e-21 | 95.5 |
| MS.gene38189.t1 | MTR_2g018960 | 28.188 | 149 | 97 | 3 | 168 | 310 | 663 | 807 | 5.01e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38189.t1 | AT2G04850 | 70.219 | 366 | 107 | 2 | 1 | 365 | 38 | 402 | 0.0 | 532 |
| MS.gene38189.t1 | AT3G25290 | 32.222 | 360 | 223 | 6 | 1 | 352 | 43 | 389 | 1.07e-67 | 219 |
| MS.gene38189.t1 | AT3G25290 | 32.222 | 360 | 223 | 6 | 1 | 352 | 43 | 389 | 1.07e-67 | 219 |
| MS.gene38189.t1 | AT5G47530 | 33.243 | 370 | 221 | 7 | 2 | 367 | 43 | 390 | 1.81e-67 | 218 |
| MS.gene38189.t1 | AT4G12980 | 32.964 | 361 | 219 | 6 | 1 | 352 | 44 | 390 | 4.56e-67 | 217 |
| MS.gene38189.t1 | AT4G17280 | 33.333 | 360 | 217 | 7 | 2 | 355 | 50 | 392 | 1.26e-59 | 198 |
| MS.gene38189.t1 | AT5G35735 | 34.118 | 340 | 201 | 9 | 12 | 348 | 55 | 374 | 2.43e-59 | 197 |
| MS.gene38189.t1 | AT3G59070 | 30.601 | 366 | 221 | 11 | 21 | 370 | 72 | 420 | 6.83e-48 | 169 |
| MS.gene38189.t1 | AT3G07570 | 28.710 | 310 | 198 | 10 | 33 | 340 | 79 | 367 | 6.71e-31 | 121 |
| MS.gene38189.t1 | AT3G61750 | 29.508 | 305 | 192 | 10 | 33 | 336 | 11 | 293 | 6.34e-29 | 114 |
| MS.gene38189.t1 | AT3G61750 | 29.508 | 305 | 192 | 10 | 33 | 336 | 88 | 370 | 3.96e-28 | 114 |
| MS.gene38189.t1 | AT5G48750 | 28.440 | 218 | 139 | 4 | 1 | 216 | 49 | 251 | 9.02e-25 | 102 |
| MS.gene38189.t1 | AT5G54830 | 29.121 | 182 | 108 | 5 | 168 | 343 | 675 | 841 | 1.74e-13 | 72.4 |
Find 112 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACAATTTGTCCTGTATT+TGG | 0.121268 | 5.3:+78876759 | None:intergenic |
| TTAGGGCTTTCTACTCTTAT+TGG | 0.174160 | 5.3:-78875970 | MS.gene38189:CDS |
| CAAATGTTTGGTTTCATTCT+TGG | 0.192480 | 5.3:-78876270 | MS.gene38189:CDS |
| ATTCCAAACAAGGTGGATTT+TGG | 0.193690 | 5.3:+78876557 | None:intergenic |
| CCAAATTGAGTTATTGTTTA+GGG | 0.198532 | 5.3:-78875987 | MS.gene38189:CDS |
| CCTTCTGGTTGGGTTGGATT+TGG | 0.240455 | 5.3:-78876840 | MS.gene38189:CDS |
| GGTACTTTCATTTCACCTTC+TGG | 0.252833 | 5.3:-78876855 | MS.gene38189:CDS |
| ATGAGGAAAGAGGGACTTAT+TGG | 0.256520 | 5.3:-78875883 | MS.gene38189:CDS |
| ACCTTAGAACTAATCTTCTT+TGG | 0.258541 | 5.3:-78876876 | MS.gene38189:CDS |
| CTAAACTTGTTCGTAGTATT+TGG | 0.268697 | 5.3:+78876117 | None:intergenic |
| GGTTACTCTTGTGTGGTTCT+TGG | 0.269844 | 5.3:-78876063 | MS.gene38189:CDS |
| CCCTAAACAATAACTCAATT+TGG | 0.277592 | 5.3:+78875987 | None:intergenic |
| TATTGGTGTTTCCATTGCTT+TGG | 0.291938 | 5.3:-78875953 | MS.gene38189:CDS |
| TTGCTTTGGAGGTCAATTCT+TGG | 0.293222 | 5.3:-78875939 | MS.gene38189:CDS |
| AAACCAAAATCCACCTTGTT+TGG | 0.312634 | 5.3:-78876560 | MS.gene38189:CDS |
| GCCAAATTGAGTTATTGTTT+AGG | 0.317349 | 5.3:-78875988 | MS.gene38189:CDS |
| ACCAAAGAAGATTAGTTCTA+AGG | 0.327439 | 5.3:+78876875 | None:intergenic |
| AATCCACCTTGTTTGGAATA+GGG | 0.329005 | 5.3:-78876553 | MS.gene38189:CDS |
| CAAATACTACGAACAAGTTT+AGG | 0.331418 | 5.3:-78876116 | MS.gene38189:CDS |
| GAACAATTTGTCCTGTATTT+GGG | 0.335697 | 5.3:+78876760 | None:intergenic |
| CCTTGGAGCTTTGCAGACTT+TGG | 0.336139 | 5.3:-78876154 | MS.gene38189:CDS |
| AAATCCACCTTGTTTGGAAT+AGG | 0.340936 | 5.3:-78876554 | MS.gene38189:CDS |
| TGCTTTGGAGGTCAATTCTT+GGG | 0.347626 | 5.3:-78875938 | MS.gene38189:CDS |
| ATTCGACTCGAGTTTAAGTT+TGG | 0.350602 | 5.3:+78876584 | None:intergenic |
| GGAACCGTTGGGTTTGGTAT+TGG | 0.355093 | 5.3:-78876249 | MS.gene38189:CDS |
| TTTCATTTCACCTTCTGGTT+GGG | 0.360777 | 5.3:-78876850 | MS.gene38189:CDS |
| CGAACAAGTTTAGGAAGTAT+TGG | 0.369522 | 5.3:-78876107 | MS.gene38189:CDS |
| CACAAGAGTAACCAACAAAA+TGG | 0.369888 | 5.3:+78876073 | None:intergenic |
| TCTTCCTCTGCAGCCATGTA+TGG | 0.375881 | 5.3:-78876654 | MS.gene38189:CDS |
| ATGACACCGGGAGTGGAGTA+TGG | 0.379480 | 5.3:-78876210 | MS.gene38189:CDS |
| ATTTGTCCTGTATTTGGGTC+TGG | 0.381005 | 5.3:+78876765 | None:intergenic |
| ATTCTTGGAACCGTTGGGTT+TGG | 0.386831 | 5.3:-78876255 | MS.gene38189:CDS |
| CTTCGACACTTTCAGACATT+AGG | 0.387811 | 5.3:-78876324 | MS.gene38189:CDS |
| CATGCAGGAATACAAATGTT+TGG | 0.389583 | 5.3:-78876282 | MS.gene38189:CDS |
| GGCTTTGTGAATGTGTTTCA+AGG | 0.390916 | 5.3:-78876042 | MS.gene38189:CDS |
| TGTTCTAAATGCAGTCTCTT+GGG | 0.395962 | 5.3:-78876385 | MS.gene38189:CDS |
| ATTTCACCTTCTGGTTGGGT+TGG | 0.397941 | 5.3:-78876846 | MS.gene38189:CDS |
| GATAGATCAATTGATGTTGT+TGG | 0.401706 | 5.3:+78876495 | None:intergenic |
| TGGTGTTTCCATTGCTTTGG+AGG | 0.402874 | 5.3:-78875950 | MS.gene38189:CDS |
| AGTTTGGCATAGATTTGAAT+AGG | 0.403628 | 5.3:+78876600 | None:intergenic |
| GGTTTCATTCTTGGAACCGT+TGG | 0.404965 | 5.3:-78876261 | MS.gene38189:CDS |
| AGCCATGTATGGTGGGAAAA+TGG | 0.410931 | 5.3:-78876643 | MS.gene38189:CDS |
| GTGTTCTAAATGCAGTCTCT+TGG | 0.422091 | 5.3:-78876386 | MS.gene38189:CDS |
| CTTTCATTTCACCTTCTGGT+TGG | 0.424491 | 5.3:-78876851 | MS.gene38189:CDS |
| AATAGGGGACTTTATGTTCA+AGG | 0.432833 | 5.3:-78876537 | MS.gene38189:CDS |
| TTTCAAGGGTTTGAAGTGAT+TGG | 0.434245 | 5.3:-78876027 | MS.gene38189:CDS |
| CCTGTCATTTGTGGTGAAGT+AGG | 0.437815 | 5.3:+78876810 | None:intergenic |
| GAAGAGAAAATGAGGAAAGA+GGG | 0.453995 | 5.3:-78875892 | MS.gene38189:CDS |
| CCGCTATTCCAAGCTTCCTA+TGG | 0.454081 | 5.3:+78876184 | None:intergenic |
| GCATTAGTTCCTGTCATTTG+TGG | 0.456046 | 5.3:+78876801 | None:intergenic |
| GAGGAGGTTGATATTATCAA+AGG | 0.463777 | 5.3:+78876677 | None:intergenic |
| GTTTCATTCTTGGAACCGTT+GGG | 0.469923 | 5.3:-78876260 | MS.gene38189:CDS |
| CTGTCATTTGTGGTGAAGTA+GGG | 0.474757 | 5.3:+78876811 | None:intergenic |
| AATAGGCGCACCGTTATGAA+TGG | 0.475616 | 5.3:+78876617 | None:intergenic |
| TTGAAGTGATTGGTGCTAGT+AGG | 0.475727 | 5.3:-78876017 | MS.gene38189:CDS |
| ACAATGTTAAGAGTGATTCA+TGG | 0.475734 | 5.3:-78876408 | MS.gene38189:CDS |
| GGAAGAGAAAATGAGGAAAG+AGG | 0.485997 | 5.3:-78875893 | MS.gene38189:CDS |
| AATTGATGTTGTTGGATGGA+TGG | 0.487039 | 5.3:+78876503 | None:intergenic |
| TCCTCTGCAGCCATGTATGG+TGG | 0.488381 | 5.3:-78876651 | MS.gene38189:CDS |
| TTGAGGCTTGTTGTGTTGGA+AGG | 0.492815 | 5.3:+78876928 | None:intergenic |
| ATCCACCTTGTTTGGAATAG+GGG | 0.499993 | 5.3:-78876552 | MS.gene38189:CDS |
| TATGGACTCCATAGGAAGCT+TGG | 0.501492 | 5.3:-78876192 | MS.gene38189:CDS |
| AATCTAAGGAAGAGAAAATG+AGG | 0.507309 | 5.3:-78875900 | MS.gene38189:CDS |
| CGGGAAAATGACACCGGGAG+TGG | 0.512531 | 5.3:-78876217 | MS.gene38189:CDS |
| TCATTTCCAGACCCAAATAC+AGG | 0.515763 | 5.3:-78876771 | MS.gene38189:CDS |
| GCTATTGAGGCTTGTTGTGT+TGG | 0.518027 | 5.3:+78876924 | None:intergenic |
| TTGGTATTGGTATTCAACTC+GGG | 0.521041 | 5.3:-78876236 | MS.gene38189:CDS |
| TTGGAACTAGTTCTGACAAA+GGG | 0.523954 | 5.3:-78875864 | MS.gene38189:CDS |
| ACCTGACAAAACATCAAAAG+TGG | 0.524778 | 5.3:+78876464 | None:intergenic |
| AGGAGGTTGATATTATCAAA+GGG | 0.525788 | 5.3:+78876678 | None:intergenic |
| GCATGAGCATAGAACCATGC+AGG | 0.535959 | 5.3:+78876300 | None:intergenic |
| GTTCTAAATGCAGTCTCTTG+GGG | 0.536425 | 5.3:-78876384 | MS.gene38189:CDS |
| GATGTTGTTGGATGGATGGT+TGG | 0.537684 | 5.3:+78876507 | None:intergenic |
| GATCAATTGATGTTGTTGGA+TGG | 0.539796 | 5.3:+78876499 | None:intergenic |
| GCTTTGTGAATGTGTTTCAA+GGG | 0.546917 | 5.3:-78876041 | MS.gene38189:CDS |
| GCATGGTTCTATGCTCATGC+AGG | 0.552883 | 5.3:-78876297 | MS.gene38189:CDS |
| TGGGTCTGGAAATGATATCA+AGG | 0.553986 | 5.3:+78876779 | None:intergenic |
| ACAGTAGTGTCGAGGATGAA+AGG | 0.555655 | 5.3:+78876732 | None:intergenic |
| GTTCTAAGGTGGAGCTGTGA+GGG | 0.559595 | 5.3:+78876889 | None:intergenic |
| TTCAGACATTAGGCCCTGCA+TGG | 0.559629 | 5.3:-78876314 | MS.gene38189:CDS |
| CACAACAAGCCTCAATAGCA+TGG | 0.563316 | 5.3:-78876920 | MS.gene38189:CDS |
| TGGAGTCCATACTCCACTCC+CGG | 0.567063 | 5.3:+78876204 | None:intergenic |
| CCTCTGCAGCCATGTATGGT+GGG | 0.569076 | 5.3:-78876650 | MS.gene38189:CDS |
| CCCACCATACATGGCTGCAG+AGG | 0.569300 | 5.3:+78876650 | None:intergenic |
| TTTGGTATTGGTATTCAACT+CGG | 0.570897 | 5.3:-78876237 | MS.gene38189:CDS |
| AGAATTGACCTCCAAAGCAA+TGG | 0.580565 | 5.3:+78875942 | None:intergenic |
| AAAGAAGATTAGTTCTAAGG+TGG | 0.580824 | 5.3:+78876878 | None:intergenic |
| ACATGGCTGCAGAGGAAGAG+AGG | 0.585108 | 5.3:+78876658 | None:intergenic |
| GTGGAAAGTCCATGCTATTG+AGG | 0.587691 | 5.3:+78876911 | None:intergenic |
| CATTGTTGCTCTCTCAAATG+TGG | 0.591191 | 5.3:+78875830 | None:intergenic |
| TCAAAGGGTTGAGAGAGAAG+TGG | 0.597326 | 5.3:+78876693 | None:intergenic |
| GAGTGGAGTATGGACTCCAT+AGG | 0.599972 | 5.3:-78876200 | MS.gene38189:CDS |
| CCATAGGAAGCTTGGAATAG+CGG | 0.600573 | 5.3:-78876184 | MS.gene38189:CDS |
| CCAAAGTCTGCAAAGCTCCA+AGG | 0.604381 | 5.3:+78876154 | None:intergenic |
| GAATCACTCTTAACATTGTG+AGG | 0.605965 | 5.3:+78876412 | None:intergenic |
| CCAAATCCAACCCAACCAGA+AGG | 0.618606 | 5.3:+78876840 | None:intergenic |
| CCTACTTCACCACAAATGAC+AGG | 0.618913 | 5.3:-78876810 | MS.gene38189:CDS |
| AGTTCTGACAAAGGGAGTAG+TGG | 0.620980 | 5.3:-78875856 | MS.gene38189:CDS |
| GTCAGTGTGTTGAGATGATG+AGG | 0.625145 | 5.3:+78876434 | None:intergenic |
| TCAACTCGGGAAAATGACAC+CGG | 0.627618 | 5.3:-78876223 | MS.gene38189:CDS |
| AAAATGGCAACCATTCATAA+CGG | 0.628745 | 5.3:-78876627 | MS.gene38189:CDS |
| CTAAGGTGGAGCTGTGAGGG+TGG | 0.630452 | 5.3:+78876892 | None:intergenic |
| AGTTCTAAGGTGGAGCTGTG+AGG | 0.642313 | 5.3:+78876888 | None:intergenic |
| CAACTCGGGAAAATGACACC+GGG | 0.644833 | 5.3:-78876222 | MS.gene38189:CDS |
| ATTGGAACTAGTTCTGACAA+AGG | 0.648605 | 5.3:-78875865 | MS.gene38189:CDS |
| CATGAGCATAGAACCATGCA+GGG | 0.659464 | 5.3:+78876301 | None:intergenic |
| CGTGCTGTTATCGCTCCCGT+AGG | 0.660166 | 5.3:+78876351 | None:intergenic |
| AAAGTCCCCTATTCCAAACA+AGG | 0.662891 | 5.3:+78876547 | None:intergenic |
| GTCCCCTATTCCAAACAAGG+TGG | 0.668298 | 5.3:+78876550 | None:intergenic |
| AATACCAATACCAAACCCAA+CGG | 0.681789 | 5.3:+78876245 | None:intergenic |
| AAGAGTAACCAACAAAATGG+TGG | 0.683274 | 5.3:+78876076 | None:intergenic |
| TGGCTGCAGAGGAAGAGAGG+AGG | 0.691481 | 5.3:+78876661 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTGTAGGAAATCTA+AGG | - | chr5.3:78876862-78876881 | MS.gene38189:CDS | 20.0% |
| ! | CCAAATTGAGTTATTGTTTA+GGG | - | chr5.3:78876789-78876808 | MS.gene38189:CDS | 25.0% |
| !!! | ATTCTTGGGTTATTTTTTGT+AGG | - | chr5.3:78876852-78876871 | MS.gene38189:CDS | 25.0% |
| AAAATGGCAACCATTCATAA+CGG | - | chr5.3:78876149-78876168 | MS.gene38189:CDS | 30.0% | |
| AATCTAAGGAAGAGAAAATG+AGG | - | chr5.3:78876876-78876895 | MS.gene38189:CDS | 30.0% | |
| ACAATGTTAAGAGTGATTCA+TGG | - | chr5.3:78876368-78876387 | MS.gene38189:CDS | 30.0% | |
| ACCTTAGAACTAATCTTCTT+TGG | - | chr5.3:78875900-78875919 | MS.gene38189:CDS | 30.0% | |
| AGAACAATTTGTCCTGTATT+TGG | + | chr5.3:78876020-78876039 | None:intergenic | 30.0% | |
| AGTTTGGCATAGATTTGAAT+AGG | + | chr5.3:78876179-78876198 | None:intergenic | 30.0% | |
| CAAATACTACGAACAAGTTT+AGG | - | chr5.3:78876660-78876679 | MS.gene38189:CDS | 30.0% | |
| CCCTAAACAATAACTCAATT+TGG | + | chr5.3:78876792-78876811 | None:intergenic | 30.0% | |
| GAACAATTTGTCCTGTATTT+GGG | + | chr5.3:78876019-78876038 | None:intergenic | 30.0% | |
| GATAGATCAATTGATGTTGT+TGG | + | chr5.3:78876284-78876303 | None:intergenic | 30.0% | |
| GCCAAATTGAGTTATTGTTT+AGG | - | chr5.3:78876788-78876807 | MS.gene38189:CDS | 30.0% | |
| ! | AAATCTTACCACCATTTTGT+TGG | - | chr5.3:78876692-78876711 | MS.gene38189:CDS | 30.0% |
| ! | CAAATGTTTGGTTTCATTCT+TGG | - | chr5.3:78876506-78876525 | MS.gene38189:CDS | 30.0% |
| ! | CTAAACTTGTTCGTAGTATT+TGG | + | chr5.3:78876662-78876681 | None:intergenic | 30.0% |
| !! | AAAGAAGATTAGTTCTAAGG+TGG | + | chr5.3:78875901-78875920 | None:intergenic | 30.0% |
| !! | ACCAAAGAAGATTAGTTCTA+AGG | + | chr5.3:78875904-78875923 | None:intergenic | 30.0% |
| !! | AGGAGGTTGATATTATCAAA+GGG | + | chr5.3:78876101-78876120 | None:intergenic | 30.0% |
| !! | TTTGGTATTGGTATTCAACT+CGG | - | chr5.3:78876539-78876558 | MS.gene38189:CDS | 30.0% |
| AAACCAAAATCCACCTTGTT+TGG | - | chr5.3:78876216-78876235 | MS.gene38189:CDS | 35.0% | |
| AAGAGTAACCAACAAAATGG+TGG | + | chr5.3:78876703-78876722 | None:intergenic | 35.0% | |
| AATACCAATACCAAACCCAA+CGG | + | chr5.3:78876534-78876553 | None:intergenic | 35.0% | |
| AATAGGGGACTTTATGTTCA+AGG | - | chr5.3:78876239-78876258 | MS.gene38189:CDS | 35.0% | |
| AATTGATGTTGTTGGATGGA+TGG | + | chr5.3:78876276-78876295 | None:intergenic | 35.0% | |
| ACCTGACAAAACATCAAAAG+TGG | + | chr5.3:78876315-78876334 | None:intergenic | 35.0% | |
| CACAAGAGTAACCAACAAAA+TGG | + | chr5.3:78876706-78876725 | None:intergenic | 35.0% | |
| CATGCAGGAATACAAATGTT+TGG | - | chr5.3:78876494-78876513 | MS.gene38189:CDS | 35.0% | |
| GAAGAGAAAATGAGGAAAGA+GGG | - | chr5.3:78876884-78876903 | MS.gene38189:CDS | 35.0% | |
| GAATCACTCTTAACATTGTG+AGG | + | chr5.3:78876367-78876386 | None:intergenic | 35.0% | |
| GATCAATTGATGTTGTTGGA+TGG | + | chr5.3:78876280-78876299 | None:intergenic | 35.0% | |
| GCTTTGTGAATGTGTTTCAA+GGG | - | chr5.3:78876735-78876754 | MS.gene38189:CDS | 35.0% | |
| TTAGGGCTTTCTACTCTTAT+TGG | - | chr5.3:78876806-78876825 | MS.gene38189:CDS | 35.0% | |
| ! | AAATCCACCTTGTTTGGAAT+AGG | - | chr5.3:78876222-78876241 | MS.gene38189:CDS | 35.0% |
| ! | AATCCACCTTGTTTGGAATA+GGG | - | chr5.3:78876223-78876242 | MS.gene38189:CDS | 35.0% |
| ! | ATTCGACTCGAGTTTAAGTT+TGG | + | chr5.3:78876195-78876214 | None:intergenic | 35.0% |
| ! | CGAACAAGTTTAGGAAGTAT+TGG | - | chr5.3:78876669-78876688 | MS.gene38189:CDS | 35.0% |
| ! | TATTGGTGTTTCCATTGCTT+TGG | - | chr5.3:78876823-78876842 | MS.gene38189:CDS | 35.0% |
| ! | TGTTCTAAATGCAGTCTCTT+GGG | - | chr5.3:78876391-78876410 | MS.gene38189:CDS | 35.0% |
| ! | TTGGGGTATACTTTTACCTA+CGG | - | chr5.3:78876409-78876428 | MS.gene38189:CDS | 35.0% |
| ! | TTTCAAGGGTTTGAAGTGAT+TGG | - | chr5.3:78876749-78876768 | MS.gene38189:CDS | 35.0% |
| ! | TTTCATTTCACCTTCTGGTT+GGG | - | chr5.3:78875926-78875945 | MS.gene38189:CDS | 35.0% |
| !! | ATTCCAAACAAGGTGGATTT+TGG | + | chr5.3:78876222-78876241 | None:intergenic | 35.0% |
| !! | ATTGGAACTAGTTCTGACAA+AGG | - | chr5.3:78876911-78876930 | MS.gene38189:CDS | 35.0% |
| !! | GAGGAGGTTGATATTATCAA+AGG | + | chr5.3:78876102-78876121 | None:intergenic | 35.0% |
| !! | TTGGAACTAGTTCTGACAAA+GGG | - | chr5.3:78876912-78876931 | MS.gene38189:CDS | 35.0% |
| !! | TTGGTATTGGTATTCAACTC+GGG | - | chr5.3:78876540-78876559 | MS.gene38189:CDS | 35.0% |
| !! | TTTTGTTGGTTACTCTTGTG+TGG | - | chr5.3:78876706-78876725 | MS.gene38189:CDS | 35.0% |
| AAAGTCCCCTATTCCAAACA+AGG | + | chr5.3:78876232-78876251 | None:intergenic | 40.0% | |
| AGAATTGACCTCCAAAGCAA+TGG | + | chr5.3:78876837-78876856 | None:intergenic | 40.0% | |
| ATGAGGAAAGAGGGACTTAT+TGG | - | chr5.3:78876893-78876912 | MS.gene38189:CDS | 40.0% | |
| ATTTGTCCTGTATTTGGGTC+TGG | + | chr5.3:78876014-78876033 | None:intergenic | 40.0% | |
| CTTCGACACTTTCAGACATT+AGG | - | chr5.3:78876452-78876471 | MS.gene38189:CDS | 40.0% | |
| CTTTCATTTCACCTTCTGGT+TGG | - | chr5.3:78875925-78875944 | MS.gene38189:CDS | 40.0% | |
| GGAAGAGAAAATGAGGAAAG+AGG | - | chr5.3:78876883-78876902 | MS.gene38189:CDS | 40.0% | |
| GGTACTTTCATTTCACCTTC+TGG | - | chr5.3:78875921-78875940 | MS.gene38189:CDS | 40.0% | |
| GTTTCATTCTTGGAACCGTT+GGG | - | chr5.3:78876516-78876535 | MS.gene38189:CDS | 40.0% | |
| TCATTTCCAGACCCAAATAC+AGG | - | chr5.3:78876005-78876024 | MS.gene38189:CDS | 40.0% | |
| TGGGTCTGGAAATGATATCA+AGG | + | chr5.3:78876000-78876019 | None:intergenic | 40.0% | |
| ! | ATCCACCTTGTTTGGAATAG+GGG | - | chr5.3:78876224-78876243 | MS.gene38189:CDS | 40.0% |
| ! | CTGTCATTTGTGGTGAAGTA+GGG | + | chr5.3:78875968-78875987 | None:intergenic | 40.0% |
| ! | GAAGTTTTACAGTAGTGTCG+AGG | + | chr5.3:78876055-78876074 | None:intergenic | 40.0% |
| ! | GCATTAGTTCCTGTCATTTG+TGG | + | chr5.3:78875978-78875997 | None:intergenic | 40.0% |
| ! | GGCTTTGTGAATGTGTTTCA+AGG | - | chr5.3:78876734-78876753 | MS.gene38189:CDS | 40.0% |
| ! | GTGTTCTAAATGCAGTCTCT+TGG | - | chr5.3:78876390-78876409 | MS.gene38189:CDS | 40.0% |
| ! | GTTCTAAATGCAGTCTCTTG+GGG | - | chr5.3:78876392-78876411 | MS.gene38189:CDS | 40.0% |
| ! | TGGGGTATACTTTTACCTAC+GGG | - | chr5.3:78876410-78876429 | MS.gene38189:CDS | 40.0% |
| !! | TGCTTTGGAGGTCAATTCTT+GGG | - | chr5.3:78876838-78876857 | MS.gene38189:CDS | 40.0% |
| !! | TTGAAGTGATTGGTGCTAGT+AGG | - | chr5.3:78876759-78876778 | MS.gene38189:CDS | 40.0% |
| !! | TTGCTTTGGAGGTCAATTCT+TGG | - | chr5.3:78876837-78876856 | MS.gene38189:CDS | 40.0% |
| !!! | GCCACTTTTGATGTTTTGTC+AGG | - | chr5.3:78876311-78876330 | MS.gene38189:CDS | 40.0% |
| AATAGGCGCACCGTTATGAA+TGG | + | chr5.3:78876162-78876181 | None:intergenic | 45.0% | |
| ATTCTTGGAACCGTTGGGTT+TGG | - | chr5.3:78876521-78876540 | MS.gene38189:CDS | 45.0% | |
| CACAACAAGCCTCAATAGCA+TGG | - | chr5.3:78875856-78875875 | MS.gene38189:CDS | 45.0% | |
| CATGAGCATAGAACCATGCA+GGG | + | chr5.3:78876478-78876497 | None:intergenic | 45.0% | |
| CCATAGGAAGCTTGGAATAG+CGG | - | chr5.3:78876592-78876611 | MS.gene38189:CDS | 45.0% | |
| CCTACTTCACCACAAATGAC+AGG | - | chr5.3:78875966-78875985 | MS.gene38189:CDS | 45.0% | |
| GATGTTGTTGGATGGATGGT+TGG | + | chr5.3:78876272-78876291 | None:intergenic | 45.0% | |
| GGTTACTCTTGTGTGGTTCT+TGG | - | chr5.3:78876713-78876732 | MS.gene38189:CDS | 45.0% | |
| GGTTTCATTCTTGGAACCGT+TGG | - | chr5.3:78876515-78876534 | MS.gene38189:CDS | 45.0% | |
| GTCAGTGTGTTGAGATGATG+AGG | + | chr5.3:78876345-78876364 | None:intergenic | 45.0% | |
| GTGGAAAGTCCATGCTATTG+AGG | + | chr5.3:78875868-78875887 | None:intergenic | 45.0% | |
| TATGGACTCCATAGGAAGCT+TGG | - | chr5.3:78876584-78876603 | MS.gene38189:CDS | 45.0% | |
| TCAAAGGGTTGAGAGAGAAG+TGG | + | chr5.3:78876086-78876105 | None:intergenic | 45.0% | |
| TCAACTCGGGAAAATGACAC+CGG | - | chr5.3:78876553-78876572 | MS.gene38189:CDS | 45.0% | |
| TGGTGTTTCCATTGCTTTGG+AGG | - | chr5.3:78876826-78876845 | MS.gene38189:CDS | 45.0% | |
| ! | ACAGTAGTGTCGAGGATGAA+AGG | + | chr5.3:78876047-78876066 | None:intergenic | 45.0% |
| ! | AGCCATGTATGGTGGGAAAA+TGG | - | chr5.3:78876133-78876152 | MS.gene38189:CDS | 45.0% |
| ! | AGTTCTGACAAAGGGAGTAG+TGG | - | chr5.3:78876920-78876939 | MS.gene38189:CDS | 45.0% |
| ! | ATTTCACCTTCTGGTTGGGT+TGG | - | chr5.3:78875930-78875949 | MS.gene38189:CDS | 45.0% |
| ! | CCTGTCATTTGTGGTGAAGT+AGG | + | chr5.3:78875969-78875988 | None:intergenic | 45.0% |
| !! | GCTATTGAGGCTTGTTGTGT+TGG | + | chr5.3:78875855-78875874 | None:intergenic | 45.0% |
| !! | TTGAGGCTTGTTGTGTTGGA+AGG | + | chr5.3:78875851-78875870 | None:intergenic | 45.0% |
| !!! | TGCCATTTTCCCACCATACA+TGG | + | chr5.3:78876138-78876157 | None:intergenic | 45.0% |
| CAACTCGGGAAAATGACACC+GGG | - | chr5.3:78876554-78876573 | MS.gene38189:CDS | 50.0% | |
| CCAAAGTCTGCAAAGCTCCA+AGG | + | chr5.3:78876625-78876644 | None:intergenic | 50.0% | |
| CCAAATCCAACCCAACCAGA+AGG | + | chr5.3:78875939-78875958 | None:intergenic | 50.0% | |
| CCGCTATTCCAAGCTTCCTA+TGG | + | chr5.3:78876595-78876614 | None:intergenic | 50.0% | |
| CCTTGGAGCTTTGCAGACTT+TGG | - | chr5.3:78876622-78876641 | MS.gene38189:CDS | 50.0% | |
| GAGTGGAGTATGGACTCCAT+AGG | - | chr5.3:78876576-78876595 | MS.gene38189:CDS | 50.0% | |
| GCATGAGCATAGAACCATGC+AGG | + | chr5.3:78876479-78876498 | None:intergenic | 50.0% | |
| GTCCCCTATTCCAAACAAGG+TGG | + | chr5.3:78876229-78876248 | None:intergenic | 50.0% | |
| TCTTCCTCTGCAGCCATGTA+TGG | - | chr5.3:78876122-78876141 | MS.gene38189:CDS | 50.0% | |
| TTCAGACATTAGGCCCTGCA+TGG | - | chr5.3:78876462-78876481 | MS.gene38189:CDS | 50.0% | |
| ! | GCATGGTTCTATGCTCATGC+AGG | - | chr5.3:78876479-78876498 | MS.gene38189:CDS | 50.0% |
| ! | GGAACCGTTGGGTTTGGTAT+TGG | - | chr5.3:78876527-78876546 | MS.gene38189:CDS | 50.0% |
| ! | GGAATAGCGGTGTTTTGCCT+TGG | - | chr5.3:78876605-78876624 | MS.gene38189:CDS | 50.0% |
| !! | AGTTCTAAGGTGGAGCTGTG+AGG | + | chr5.3:78875891-78875910 | None:intergenic | 50.0% |
| !! | CCTTCTGGTTGGGTTGGATT+TGG | - | chr5.3:78875936-78875955 | MS.gene38189:CDS | 50.0% |
| !! | GTTCTAAGGTGGAGCTGTGA+GGG | + | chr5.3:78875890-78875909 | None:intergenic | 50.0% |
| ACATGGCTGCAGAGGAAGAG+AGG | + | chr5.3:78876121-78876140 | None:intergenic | 55.0% | |
| ATGACACCGGGAGTGGAGTA+TGG | - | chr5.3:78876566-78876585 | MS.gene38189:CDS | 55.0% | |
| CCTCTGCAGCCATGTATGGT+GGG | - | chr5.3:78876126-78876145 | MS.gene38189:CDS | 55.0% | |
| TCCTCTGCAGCCATGTATGG+TGG | - | chr5.3:78876125-78876144 | MS.gene38189:CDS | 55.0% | |
| TGGAGTCCATACTCCACTCC+CGG | + | chr5.3:78876575-78876594 | None:intergenic | 55.0% | |
| CCCACCATACATGGCTGCAG+AGG | + | chr5.3:78876129-78876148 | None:intergenic | 60.0% | |
| CGGGAAAATGACACCGGGAG+TGG | - | chr5.3:78876559-78876578 | MS.gene38189:CDS | 60.0% | |
| CTAAGGTGGAGCTGTGAGGG+TGG | + | chr5.3:78875887-78875906 | None:intergenic | 60.0% | |
| TGGCTGCAGAGGAAGAGAGG+AGG | + | chr5.3:78876118-78876137 | None:intergenic | 60.0% | |
| ! | CGTGCTGTTATCGCTCCCGT+AGG | + | chr5.3:78876428-78876447 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 78875843 | 78876955 | 78875843 | ID=MS.gene38189 |
| chr5.3 | mRNA | 78875843 | 78876955 | 78875843 | ID=MS.gene38189.t1;Parent=MS.gene38189 |
| chr5.3 | exon | 78875843 | 78876955 | 78875843 | ID=MS.gene38189.t1.exon1;Parent=MS.gene38189.t1 |
| chr5.3 | CDS | 78875843 | 78876955 | 78875843 | ID=cds.MS.gene38189.t1;Parent=MS.gene38189.t1 |
| Gene Sequence |
| Protein sequence |
