AlfalfaGEDB | MS.gene38739

M. sativa cultivar XinJiangDaYe / MS.gene38739

KEGG: -
GO: -
PFAM: PF07816.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38739.t1	XP_003603003.1	93	299	19	1	1	297	1	299	4.20E-136	494.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38739.t1	G7J5T8	93.0	299	19	1	1	297	1	299	3.1e-136	494.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053879	MS.gene38739	0.831436	1.67E-55	-1.69E-46
MS.gene054620	MS.gene38739	0.911914	3.54E-83	-1.69E-46
MS.gene055150	MS.gene38739	0.847559	1.07E-59	-1.69E-46
MS.gene057622	MS.gene38739	0.824457	7.99E-54	-1.69E-46
MS.gene057999	MS.gene38739	0.820732	5.87E-53	-1.69E-46
MS.gene058592	MS.gene38739	0.809622	1.73E-50	-1.69E-46
MS.gene05952	MS.gene38739	0.818027	2.43E-52	-1.69E-46
MS.gene060977	MS.gene38739	0.805563	1.26E-49	-1.69E-46

Showing 1 to 8 of 8 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38739.t1	MTR_3g101320	95.987	299	10	1	1	297	1	299	0.0	571
MS.gene38739.t1	MTR_1g021070	47.432	331	106	12	1	293	1	301	3.20e-57	186
MS.gene38739.t1	MTR_4g086620	37.838	333	144	13	1	297	1	306	2.76e-47	161
MS.gene38739.t1	MTR_1g033900	38.174	241	121	9	55	290	42	259	5.49e-29	112

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38739.t1	AT2G26530	39.640	333	111	13	26	290	6	316	2.49e-36	132
MS.gene38739.t1	AT2G26530	38.199	322	104	13	26	290	6	289	3.80e-30	115
MS.gene38739.t1	AT2G15760	34.641	306	146	11	16	290	14	296	1.82e-29	114
MS.gene38739.t1	AT3G62630	26.048	334	157	12	25	290	47	358	1.86e-12	67.4

Showing 1 to 4 of 4 entries

Previous1Next

Find 49 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTCATCTCTTGGTAA+TGG	0.445966	3.3:-83961158	MS.gene38739:CDS
AAATCGAAATGATCTATGGT+AGG	0.578754	3.3:+83961491	None:intergenic
AAATCTTCACCAAAACGTTT+TGG	0.332204	3.3:+83961431	None:intergenic
AAATTATCGGAAGAAGGAAA+AGG	0.566338	3.3:-83960840	MS.gene38739:CDS
AACAAGAAATTATCGGAAGA+AGG	0.500623	3.3:-83960846	MS.gene38739:CDS
AACATCACAATACACATGGG+TGG	0.638441	3.3:-83961045	MS.gene38739:CDS
AAGGCTTGATTACACCACCA+TGG	0.673762	3.3:+83961285	None:intergenic
AATAAGAAAGATTCATCTCT+TGG	0.423616	3.3:-83961164	MS.gene38739:CDS
AATTGAGAGTAAAACCTTGA+TGG	0.395223	3.3:+83961386	None:intergenic
AATTTCTTGTTGTATGAAAC+AGG	0.288569	3.3:+83960858	None:intergenic

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATTCATCTCTTGGTAA+TGG	-	chr3.3:83961019-83961038	MS.gene38739:CDS	30.0%
AAATCGAAATGATCTATGGT+AGG	+	chr3.3:83960689-83960708	None:intergenic	30.0%
AAATTATCGGAAGAAGGAAA+AGG	-	chr3.3:83961337-83961356	MS.gene38739:CDS	30.0%
AACAAGAAATTATCGGAAGA+AGG	-	chr3.3:83961331-83961350	MS.gene38739:CDS	30.0%
AATTGAGAGTAAAACCTTGA+TGG	+	chr3.3:83960794-83960813	None:intergenic	30.0%
ACATTCTTGCCTTATAAACA+AGG	-	chr3.3:83961481-83961500	MS.gene38739:CDS	30.0%
ATAGAACATCACAATACACA+TGG	-	chr3.3:83961128-83961147	MS.gene38739:CDS	30.0%
ATTGAGAGTAAAACCTTGAT+GGG	+	chr3.3:83960793-83960812	None:intergenic	30.0%
CATTCTTGCCTTATAAACAA+GGG	-	chr3.3:83961482-83961501	MS.gene38739:CDS	30.0%
GTGTATTGTGATGTTCTATA+TGG	+	chr3.3:83961127-83961146	None:intergenic	30.0%

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	83960653	83961546	83960653	ID=MS.gene38739
chr3.3	mRNA	83960653	83961546	83960653	ID=MS.gene38739.t1;Parent=MS.gene38739
chr3.3	exon	83960653	83961546	83960653	ID=MS.gene38739.t1.exon1;Parent=MS.gene38739.t1
chr3.3	CDS	83960653	83961546	83960653	ID=cds.MS.gene38739.t1;Parent=MS.gene38739.t1

Gene Sequence

>MS.gene38739

ATGGAAGTGTTGATGCATAGCCCTAGAGAGAGTCCTACCATAGATCATTTCGATTTCAACAGAATCTCACCTTATCTAAGTGCTCCTTCTTCACCAAAACGTTTTGGTGAAGATTTTTACTTAAGTGCACCCACTAGCCCATCAAGGTTTTACTCTCAATTTGAAGATGAAGATGCTGGATTTGCGTTTTCTGTTCATAGAGAATCAGATTCATCACACCGTTCAGCTGAAGAACTTTTCCATGGTGGTGTAATCAAGCCTTTAGAATCTGCTAAATCTCCTCTTCTATCTCCAAATAGAGTCAAAAAATCTCCAATAGCAAAAGGTAAAAAAGCAATCATGGAAGCTTTTTCACCTAAAAATAAGAAAGATTCATCTCTTGGTAATGGAGAAAGAAGAGGTAGAGATAGAACACCAGCTTCTGAAGTTTCTTCATCGAATTCTGGTCGTAGGGTCACACGTTCACATTCTCCATATAGAACATCACAATACACATGGGTGGAACAACAACAACAACATAAACAATCACAAAAAGAGGATTCTGTTGAATCTAATCAAACCGTTTCTTCTTCGAAGAGCTCTAGAATATGGAGATTGAGAGATTTTTTGTTGTTTCGTAGTGCATCAGAAGGAAGAGGAACAAACAAAGATCCATTCAGAAAATACCCTGTTTCATACAACAAGAAATTATCGGAAGAAGGAAAAGGTTCATCATCACCGTTTAGATCTTCTGAGATTCCGAGACCTAGAAGAAAGGATTCCGGTGTTTCTGCACATGAATTGCATTATGCTAGGAAAAAAGCAGAGTCTGAAGATTTGAAGAAGAGAACATTCTTGCCTTATAAACAAGGGATTTTGGGTAGGTTAGCTGGGTTAGGATCAAACACAAGATGA

Protein sequence

>MS.gene38739.t1

MEVLMHSPRESPTIDHFDFNRISPYLSAPSSPKRFGEDFYLSAPTSPSRFYSQFEDEDAGFAFSVHRESDSSHRSAEELFHGGVIKPLESAKSPLLSPNRVKKSPIAKGKKAIMEAFSPKNKKDSSLGNGERRGRDRTPASEVSSSNSGRRVTRSHSPYRTSQYTWVEQQQQHKQSQKEDSVESNQTVSSSKSSRIWRLRDFLLFRSASEGRGTNKDPFRKYPVSYNKKLSEEGKGSSSPFRSSEIPRPRRKDSGVSAHELHYARKKAESEDLKKRTFLPYKQGILGRLAGLGSNTR