Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38834.t1 | XP_013445151.1 | 98.4 | 252 | 4 | 0 | 1 | 252 | 1 | 252 | 4.90E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38834.t1 | Q9LTV6 | 78.9 | 256 | 53 | 1 | 6 | 260 | 2 | 257 | 6.9e-115 | 415.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38834.t1 | A0A072TP38 | 98.4 | 252 | 4 | 0 | 1 | 252 | 1 | 252 | 3.5e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00059 | MS.gene38834 | PPI |
| MS.gene38834 | MS.gene55898 | PPI |
| MS.gene38834 | MS.gene67886 | PPI |
| MS.gene058335 | MS.gene38834 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38834.t1 | MTR_8g442750 | 98.413 | 252 | 4 | 0 | 1 | 252 | 1 | 252 | 0.0 | 504 |
| MS.gene38834.t1 | MTR_7g113650 | 30.859 | 256 | 145 | 9 | 9 | 249 | 34 | 272 | 1.14e-23 | 99.4 |
| MS.gene38834.t1 | MTR_4g131740 | 32.787 | 244 | 144 | 7 | 14 | 248 | 40 | 272 | 3.91e-23 | 97.8 |
| MS.gene38834.t1 | MTR_1g082760 | 30.400 | 250 | 154 | 6 | 9 | 249 | 34 | 272 | 1.08e-22 | 96.7 |
| MS.gene38834.t1 | MTR_4g064887 | 30.417 | 240 | 148 | 6 | 14 | 247 | 15 | 241 | 9.32e-21 | 90.5 |
| MS.gene38834.t1 | MTR_7g063270 | 29.134 | 254 | 164 | 6 | 1 | 247 | 1 | 245 | 6.24e-20 | 88.2 |
| MS.gene38834.t1 | MTR_7g063260 | 28.346 | 254 | 167 | 5 | 1 | 247 | 1 | 246 | 2.07e-18 | 84.0 |
| MS.gene38834.t1 | MTR_4g064887 | 32.663 | 199 | 115 | 6 | 14 | 206 | 15 | 200 | 3.69e-18 | 82.4 |
| MS.gene38834.t1 | MTR_4g064883 | 28.395 | 243 | 165 | 4 | 14 | 255 | 14 | 248 | 6.19e-18 | 82.8 |
| MS.gene38834.t1 | MTR_7g063390 | 29.187 | 209 | 137 | 4 | 1 | 206 | 1 | 201 | 1.16e-17 | 82.0 |
| MS.gene38834.t1 | MTR_8g096620 | 31.390 | 223 | 137 | 6 | 9 | 227 | 40 | 250 | 5.74e-17 | 81.3 |
| MS.gene38834.t1 | MTR_8g096580 | 32.843 | 204 | 112 | 7 | 12 | 206 | 43 | 230 | 9.10e-17 | 80.5 |
| MS.gene38834.t1 | MTR_3g068065 | 26.749 | 243 | 153 | 9 | 14 | 247 | 17 | 243 | 1.61e-16 | 79.0 |
| MS.gene38834.t1 | MTR_3g085740 | 28.455 | 246 | 162 | 5 | 3 | 247 | 67 | 299 | 4.41e-16 | 78.2 |
| MS.gene38834.t1 | MTR_4g052350 | 30.116 | 259 | 153 | 9 | 14 | 262 | 14 | 254 | 5.08e-16 | 77.4 |
| MS.gene38834.t1 | MTR_4g064883 | 30.890 | 191 | 123 | 4 | 14 | 203 | 14 | 196 | 5.85e-16 | 76.3 |
| MS.gene38834.t1 | MTR_4g132850 | 30.453 | 243 | 151 | 5 | 11 | 249 | 4 | 232 | 6.19e-16 | 76.6 |
| MS.gene38834.t1 | MTR_7g063360 | 27.715 | 267 | 168 | 7 | 1 | 255 | 1 | 254 | 6.53e-16 | 77.0 |
| MS.gene38834.t1 | MTR_3g068070 | 26.050 | 238 | 161 | 6 | 14 | 247 | 15 | 241 | 6.55e-16 | 77.0 |
| MS.gene38834.t1 | MTR_7g063320 | 26.877 | 253 | 164 | 6 | 5 | 247 | 4 | 245 | 1.27e-15 | 76.3 |
| MS.gene38834.t1 | MTR_3g068175 | 28.099 | 242 | 151 | 8 | 14 | 247 | 17 | 243 | 2.27e-15 | 75.5 |
| MS.gene38834.t1 | MTR_3g068155 | 26.984 | 252 | 157 | 7 | 14 | 255 | 19 | 253 | 2.76e-15 | 75.5 |
| MS.gene38834.t1 | MTR_7g071680 | 27.972 | 286 | 165 | 9 | 4 | 262 | 19 | 290 | 3.16e-15 | 75.5 |
| MS.gene38834.t1 | MTR_4g052300 | 29.344 | 259 | 155 | 8 | 14 | 262 | 8 | 248 | 3.34e-15 | 75.1 |
| MS.gene38834.t1 | MTR_7g105590 | 31.122 | 196 | 121 | 5 | 14 | 206 | 8 | 192 | 5.71e-15 | 72.8 |
| MS.gene38834.t1 | MTR_1196s0010 | 29.707 | 239 | 156 | 5 | 17 | 255 | 277 | 503 | 7.98e-15 | 75.5 |
| MS.gene38834.t1 | MTR_4g052320 | 29.615 | 260 | 154 | 8 | 14 | 262 | 8 | 249 | 1.01e-14 | 73.6 |
| MS.gene38834.t1 | MTR_3g068085 | 25.847 | 236 | 164 | 5 | 14 | 247 | 15 | 241 | 1.67e-14 | 73.2 |
| MS.gene38834.t1 | MTR_4g052340 | 29.344 | 259 | 155 | 9 | 14 | 262 | 14 | 254 | 3.11e-14 | 72.4 |
| MS.gene38834.t1 | MTR_3g068175 | 27.600 | 250 | 162 | 8 | 14 | 255 | 17 | 255 | 6.50e-14 | 71.2 |
| MS.gene38834.t1 | MTR_7g105580 | 29.572 | 257 | 142 | 10 | 14 | 262 | 8 | 233 | 6.84e-14 | 70.9 |
| MS.gene38834.t1 | MTR_1g068955 | 30.769 | 260 | 162 | 8 | 1 | 252 | 1 | 250 | 9.41e-14 | 70.9 |
| MS.gene38834.t1 | MTR_4g058810 | 29.386 | 228 | 146 | 7 | 14 | 234 | 11 | 230 | 3.13e-12 | 66.6 |
| MS.gene38834.t1 | MTR_1g051165 | 30.516 | 213 | 125 | 9 | 6 | 204 | 5 | 208 | 4.88e-12 | 65.9 |
| MS.gene38834.t1 | MTR_3g098470 | 29.932 | 147 | 96 | 2 | 15 | 161 | 33 | 172 | 5.12e-12 | 66.2 |
| MS.gene38834.t1 | MTR_4g078630 | 29.603 | 277 | 158 | 11 | 1 | 258 | 5 | 263 | 1.82e-11 | 64.3 |
| MS.gene38834.t1 | MTR_1g031180 | 28.571 | 147 | 98 | 2 | 15 | 161 | 38 | 177 | 5.89e-11 | 63.2 |
| MS.gene38834.t1 | MTR_8g096060 | 31.293 | 147 | 91 | 3 | 15 | 161 | 35 | 171 | 6.22e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38834.t1 | AT3G12800 | 78.516 | 256 | 54 | 1 | 6 | 260 | 2 | 257 | 1.97e-132 | 380 |
| MS.gene38834.t1 | AT2G07640 | 74.046 | 131 | 33 | 1 | 131 | 260 | 1 | 131 | 5.77e-57 | 182 |
| MS.gene38834.t1 | AT3G05260 | 32.016 | 253 | 153 | 6 | 5 | 249 | 27 | 268 | 6.22e-27 | 108 |
| MS.gene38834.t1 | AT1G54870 | 31.967 | 244 | 147 | 6 | 14 | 249 | 84 | 316 | 2.67e-26 | 107 |
| MS.gene38834.t1 | AT1G54870 | 31.967 | 244 | 147 | 6 | 14 | 249 | 82 | 314 | 2.70e-26 | 107 |
| MS.gene38834.t1 | AT1G63380 | 30.739 | 257 | 159 | 9 | 14 | 260 | 15 | 262 | 3.56e-21 | 92.0 |
| MS.gene38834.t1 | AT1G63380 | 30.739 | 257 | 159 | 9 | 14 | 260 | 22 | 269 | 4.14e-21 | 92.0 |
| MS.gene38834.t1 | AT1G63380 | 30.739 | 257 | 159 | 9 | 14 | 260 | 19 | 266 | 4.63e-21 | 92.0 |
| MS.gene38834.t1 | AT1G63380 | 30.739 | 257 | 159 | 9 | 14 | 260 | 17 | 264 | 4.76e-21 | 91.7 |
| MS.gene38834.t1 | AT5G50600 | 32.995 | 197 | 120 | 4 | 12 | 206 | 43 | 229 | 4.26e-20 | 90.1 |
| MS.gene38834.t1 | AT5G50700 | 32.995 | 197 | 120 | 4 | 12 | 206 | 43 | 229 | 4.26e-20 | 90.1 |
| MS.gene38834.t1 | AT2G17845 | 32.308 | 260 | 153 | 10 | 14 | 260 | 47 | 296 | 6.80e-20 | 89.0 |
| MS.gene38834.t1 | AT1G62610 | 30.350 | 257 | 160 | 9 | 14 | 260 | 15 | 262 | 3.07e-19 | 86.7 |
| MS.gene38834.t1 | AT1G62610 | 30.350 | 257 | 160 | 9 | 14 | 260 | 14 | 261 | 3.08e-19 | 86.7 |
| MS.gene38834.t1 | AT1G62610 | 30.350 | 257 | 160 | 9 | 14 | 260 | 19 | 266 | 4.01e-19 | 86.3 |
| MS.gene38834.t1 | AT1G62610 | 30.350 | 257 | 160 | 9 | 14 | 260 | 13 | 260 | 4.20e-19 | 86.3 |
| MS.gene38834.t1 | AT1G52340 | 29.749 | 279 | 158 | 9 | 14 | 265 | 18 | 285 | 1.01e-17 | 82.4 |
| MS.gene38834.t1 | AT4G05530 | 30.041 | 243 | 152 | 4 | 11 | 249 | 6 | 234 | 2.57e-17 | 80.9 |
| MS.gene38834.t1 | AT5G18210 | 29.930 | 284 | 154 | 11 | 1 | 262 | 1 | 261 | 7.49e-17 | 80.1 |
| MS.gene38834.t1 | AT5G18210 | 30.483 | 269 | 147 | 10 | 1 | 252 | 1 | 246 | 8.24e-17 | 79.7 |
| MS.gene38834.t1 | AT2G29260 | 28.571 | 245 | 162 | 5 | 14 | 255 | 68 | 302 | 1.14e-16 | 80.1 |
| MS.gene38834.t1 | AT3G55310 | 30.916 | 262 | 151 | 11 | 14 | 260 | 17 | 263 | 1.86e-16 | 79.0 |
| MS.gene38834.t1 | AT3G55290 | 35.500 | 200 | 110 | 8 | 14 | 204 | 17 | 206 | 2.54e-16 | 78.6 |
| MS.gene38834.t1 | AT3G55290 | 35.500 | 200 | 110 | 8 | 14 | 204 | 18 | 207 | 2.73e-16 | 78.6 |
| MS.gene38834.t1 | AT3G04000 | 29.588 | 267 | 163 | 8 | 1 | 252 | 1 | 257 | 3.41e-16 | 77.8 |
| MS.gene38834.t1 | AT2G29150 | 26.891 | 238 | 158 | 7 | 14 | 247 | 16 | 241 | 9.41e-16 | 76.6 |
| MS.gene38834.t1 | AT5G06060 | 26.891 | 238 | 159 | 5 | 14 | 247 | 9 | 235 | 1.76e-15 | 75.9 |
| MS.gene38834.t1 | AT3G46170 | 30.916 | 262 | 151 | 11 | 14 | 260 | 26 | 272 | 2.07e-15 | 75.9 |
| MS.gene38834.t1 | AT2G29290 | 28.571 | 245 | 162 | 7 | 14 | 255 | 7 | 241 | 4.28e-15 | 74.7 |
| MS.gene38834.t1 | AT5G50770 | 34.171 | 199 | 115 | 5 | 12 | 206 | 43 | 229 | 5.43e-15 | 75.5 |
| MS.gene38834.t1 | AT3G47350 | 31.841 | 201 | 119 | 6 | 12 | 207 | 42 | 229 | 7.67e-15 | 74.7 |
| MS.gene38834.t1 | AT3G47350 | 31.841 | 201 | 119 | 6 | 12 | 207 | 42 | 229 | 1.39e-14 | 73.9 |
| MS.gene38834.t1 | AT4G13180 | 28.340 | 247 | 158 | 9 | 14 | 252 | 13 | 248 | 1.81e-14 | 72.8 |
| MS.gene38834.t1 | AT2G29370 | 25.630 | 238 | 162 | 5 | 14 | 247 | 16 | 242 | 5.37e-14 | 71.6 |
| MS.gene38834.t1 | AT3G47360 | 29.474 | 190 | 122 | 5 | 17 | 204 | 48 | 227 | 8.58e-14 | 71.6 |
| MS.gene38834.t1 | AT3G26770 | 26.820 | 261 | 167 | 9 | 14 | 262 | 41 | 289 | 9.62e-14 | 71.2 |
| MS.gene38834.t1 | AT4G10020 | 28.283 | 198 | 124 | 5 | 7 | 198 | 40 | 225 | 1.94e-13 | 71.2 |
| MS.gene38834.t1 | AT3G51680 | 29.603 | 277 | 168 | 9 | 5 | 262 | 23 | 291 | 4.52e-13 | 69.3 |
| MS.gene38834.t1 | AT1G24360 | 28.139 | 231 | 155 | 4 | 18 | 247 | 78 | 298 | 7.67e-13 | 68.9 |
| MS.gene38834.t1 | AT4G03140 | 30.534 | 262 | 155 | 9 | 14 | 262 | 78 | 325 | 1.13e-12 | 68.6 |
| MS.gene38834.t1 | AT2G29310 | 27.888 | 251 | 156 | 10 | 14 | 255 | 7 | 241 | 2.81e-12 | 66.6 |
| MS.gene38834.t1 | AT3G47350 | 36.893 | 103 | 64 | 1 | 12 | 113 | 42 | 144 | 1.35e-11 | 64.7 |
| MS.gene38834.t1 | AT2G29320 | 25.630 | 238 | 163 | 4 | 14 | 247 | 13 | 240 | 1.50e-11 | 64.3 |
| MS.gene38834.t1 | AT2G47140 | 29.218 | 243 | 153 | 9 | 14 | 249 | 6 | 236 | 2.60e-11 | 63.5 |
| MS.gene38834.t1 | AT2G29330 | 29.796 | 245 | 143 | 10 | 14 | 247 | 7 | 233 | 5.90e-11 | 62.8 |
| MS.gene38834.t1 | AT5G50690 | 33.333 | 132 | 86 | 2 | 12 | 141 | 43 | 174 | 7.77e-11 | 62.8 |
| MS.gene38834.t1 | AT5G50590 | 33.333 | 132 | 86 | 2 | 12 | 141 | 43 | 174 | 7.77e-11 | 62.8 |
Find 116 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTAGTATGAACCATATC+TGG | 0.244365 | 8.4:+52793449 | MS.gene38834:CDS |
| CGCTTTCGATTCCTGCTGTT+GGG | 0.266199 | 8.4:+52790563 | MS.gene38834:CDS |
| ATTAGTGCTACCTTGCATTA+TGG | 0.276429 | 8.4:+52792256 | MS.gene38834:CDS |
| CCTTGCATTATGGAGCTTCT+TGG | 0.293806 | 8.4:+52792266 | MS.gene38834:CDS |
| TTCAAACCAGAAATCTTAAA+AGG | 0.319717 | 8.4:+52790403 | MS.gene38834:CDS |
| ACTGGCGGAGCGTCGGGAAT+TGG | 0.320337 | 8.4:+52790442 | MS.gene38834:CDS |
| GGCAAAGTAGCTTTAATAAC+TGG | 0.335212 | 8.4:+52790424 | MS.gene38834:CDS |
| TGTATAAACTTGGGGAGAAA+TGG | 0.343265 | 8.4:+52792692 | MS.gene38834:CDS |
| CCTCTGCTACCTATTTCTTC+AGG | 0.344151 | 8.4:-52792652 | None:intergenic |
| ATTCCTGCTGTTGGGTTTGA+AGG | 0.357334 | 8.4:+52790571 | MS.gene38834:CDS |
| CAACTCCTCCTGTCATGTTC+TGG | 0.359059 | 8.4:-52793486 | None:intergenic |
| AAGAAACTTGGCCCTGGAAT+GGG | 0.360032 | 8.4:+52792552 | MS.gene38834:CDS |
| GTTTGAAATATCAACGCAAT+TGG | 0.363203 | 8.4:+52790465 | MS.gene38834:CDS |
| AGTTCTTCAATCTGCGGTTT+CGG | 0.369174 | 8.4:+52790531 | MS.gene38834:CDS |
| TTGGTGACGGTGCTCGGTGT+TGG | 0.372198 | 8.4:+52793678 | MS.gene38834:CDS |
| TGCTTCACTGCTGCCGGTGG+TGG | 0.373920 | 8.4:-52793860 | None:intergenic |
| TTAATAACTGGCGGAGCGTC+GGG | 0.374098 | 8.4:+52790436 | MS.gene38834:CDS |
| CATAATCTGTTCCCCATTCC+AGG | 0.380062 | 8.4:-52792564 | None:intergenic |
| TTTGAAATATCAACGCAATT+GGG | 0.380854 | 8.4:+52790466 | MS.gene38834:CDS |
| TCGCTTTCGATTCCTGCTGT+TGG | 0.383020 | 8.4:+52790562 | MS.gene38834:CDS |
| GACGACTCCTTTCCCAGATA+TGG | 0.389987 | 8.4:-52793462 | None:intergenic |
| CTGAGGATCTTTCGCCGAAT+GGG | 0.391331 | 8.4:+52790704 | MS.gene38834:CDS |
| CTGGCGGAGCGTCGGGAATT+GGG | 0.395868 | 8.4:+52790443 | MS.gene38834:CDS |
| GATTATGATATTCGAGTCAA+TGG | 0.397358 | 8.4:+52792580 | MS.gene38834:CDS |
| TGGTGACGGTGCTCGGTGTT+GGG | 0.401682 | 8.4:+52793679 | MS.gene38834:CDS |
| TTTAAGATTTCTGGTTTGAA+TGG | 0.409904 | 8.4:-52790400 | None:intergenic |
| CACTCCTGGCATGAGTAAAC+TGG | 0.411577 | 8.4:+52792627 | MS.gene38834:CDS |
| AAACTGGCTCCTGAAGAAAT+AGG | 0.417404 | 8.4:+52792643 | MS.gene38834:CDS |
| TCGCCGAATGGGTTTCGAAC+AGG | 0.420284 | 8.4:+52790715 | MS.gene38834:CDS |
| GGGATTGCACCGGGTCCAAT+AGG | 0.421199 | 8.4:+52792601 | MS.gene38834:CDS |
| GTATAAACTTGGGGAGAAAT+GGG | 0.441031 | 8.4:+52792693 | MS.gene38834:CDS |
| TTTAATAACTGGCGGAGCGT+CGG | 0.442410 | 8.4:+52790435 | MS.gene38834:CDS |
| ATGCCAGGAGTGTCACCTAT+TGG | 0.442884 | 8.4:-52792616 | None:intergenic |
| TTCTGGTTTGAATGGTGATT+CGG | 0.443044 | 8.4:-52790392 | None:intergenic |
| CCGGTGGTGGCATTTGCCAC+CGG | 0.446940 | 8.4:-52793847 | None:intergenic |
| ACAGGAGGAGTTGCGATTGT+TGG | 0.448753 | 8.4:+52793496 | MS.gene38834:CDS |
| CACTTAAGTATCTGAAGAAA+GGG | 0.449824 | 8.4:+52792191 | MS.gene38834:CDS |
| TGAAGGGGATGTGAGGAAGC+AGG | 0.455697 | 8.4:+52790588 | MS.gene38834:CDS |
| GCTGAGGATCTTTCGCCGAA+TGG | 0.457228 | 8.4:+52790703 | MS.gene38834:CDS |
| GGTTATTGCACAGCGGGAAA+TGG | 0.458946 | 8.4:+52793724 | MS.gene38834:CDS |
| GCACCGTCACCAACCACCTC+TGG | 0.459364 | 8.4:-52793668 | None:intergenic |
| CGATTGTTGGCGCTGAAAGA+TGG | 0.462873 | 8.4:+52793509 | MS.gene38834:CDS |
| ATTCTTGTTAATGCTGCTGC+TGG | 0.464854 | 8.4:+52790664 | MS.gene38834:CDS |
| CTCTTCTTAGCATCAGATGC+AGG | 0.469651 | 8.4:+52792733 | MS.gene38834:CDS |
| TTCCTGCTGTTGGGTTTGAA+GGG | 0.470572 | 8.4:+52790572 | MS.gene38834:CDS |
| GAAATGCCTCTGTATAAACT+TGG | 0.470825 | 8.4:+52792682 | MS.gene38834:CDS |
| TGGAGCGTCGGTTGCTGTGA+TGG | 0.472642 | 8.4:+52790495 | MS.gene38834:CDS |
| AGGTGGTTGGTGACGGTGCT+CGG | 0.477656 | 8.4:+52793672 | MS.gene38834:CDS |
| GCACTTAAGTATCTGAAGAA+AGG | 0.480331 | 8.4:+52792190 | MS.gene38834:CDS |
| CAAGAAACTTGGCCCTGGAA+TGG | 0.484527 | 8.4:+52792551 | MS.gene38834:CDS |
| CAGGGCCAAGTTTCTTGTAG+TGG | 0.486821 | 8.4:-52792545 | None:intergenic |
| TCTGGATTCTCCGGCGAGCA+CGG | 0.500396 | 8.4:-52793650 | None:intergenic |
| TCTTTGTGCTTCACTGCTGC+CGG | 0.504873 | 8.4:-52793866 | None:intergenic |
| AAATGCCTCTGTATAAACTT+GGG | 0.505018 | 8.4:+52792683 | MS.gene38834:CDS |
| GTGAAGGCGCATGTGGTGGC+TGG | 0.510255 | 8.4:+52793607 | MS.gene38834:intron |
| TGATTCCACTACAAGAAACT+TGG | 0.513482 | 8.4:+52792540 | MS.gene38834:CDS |
| ATTATGATATTCGAGTCAAT+GGG | 0.519870 | 8.4:+52792581 | MS.gene38834:CDS |
| GCAGCTGGTTATTGCACAGC+GGG | 0.521407 | 8.4:+52793718 | MS.gene38834:CDS |
| GGAGCCAGTTTACTCATGCC+AGG | 0.525918 | 8.4:-52792631 | None:intergenic |
| CTTCCAATAGGCGGTGCTGC+CGG | 0.526325 | 8.4:+52793828 | MS.gene38834:intron |
| TCACCTGTTCGAAACCCATT+CGG | 0.526674 | 8.4:-52790718 | None:intergenic |
| AGTCGTCACCAGAACATGAC+AGG | 0.532138 | 8.4:+52793478 | MS.gene38834:CDS |
| CCAGATATGGTTCATACTAG+TGG | 0.537115 | 8.4:-52793449 | None:intergenic |
| CAGGTAGGAACTCTTCTAGT+GGG | 0.537627 | 8.4:+52792218 | MS.gene38834:CDS |
| CACTACAAGAAACTTGGCCC+TGG | 0.538124 | 8.4:+52792546 | MS.gene38834:CDS |
| CGAGTCAATGGGATTGCACC+GGG | 0.541053 | 8.4:+52792592 | MS.gene38834:CDS |
| CCAACCACCTCTGGATTCTC+CGG | 0.547437 | 8.4:-52793659 | None:intergenic |
| TCGAGTCAATGGGATTGCAC+CGG | 0.551196 | 8.4:+52792591 | MS.gene38834:CDS |
| CCGGTGGCAAATGCCACCAC+CGG | 0.552013 | 8.4:+52793847 | MS.gene38834:CDS |
| TTGGGTTTGAAGGGGATGTG+AGG | 0.552630 | 8.4:+52790581 | MS.gene38834:CDS |
| CGGTTGCTGTGATGGGTCGT+CGG | 0.552646 | 8.4:+52790503 | MS.gene38834:CDS |
| AATTCATGTATCTGCAGCAA+AGG | 0.552785 | 8.4:+52792294 | MS.gene38834:CDS |
| GGAGCGTCGGTTGCTGTGAT+GGG | 0.554476 | 8.4:+52790496 | MS.gene38834:CDS |
| CCACTAGAAGAGTTCCTACC+TGG | 0.554576 | 8.4:-52792217 | None:intergenic |
| TGCACCAGAAAAGTGGCAGC+TGG | 0.555705 | 8.4:+52793703 | MS.gene38834:CDS |
| TTCTTGTTAATGCTGCTGCT+GGG | 0.557653 | 8.4:+52790665 | MS.gene38834:CDS |
| TCCCCTTCAAACCCAACAGC+AGG | 0.558276 | 8.4:-52790574 | None:intergenic |
| AGCAGTGAAGCACAAAGATA+AGG | 0.565227 | 8.4:+52793871 | MS.gene38834:CDS |
| TATCTGAAGAAAGGGGCACC+AGG | 0.566045 | 8.4:+52792199 | MS.gene38834:CDS |
| AATCCAGAGGTGGTTGGTGA+CGG | 0.566377 | 8.4:+52793665 | MS.gene38834:CDS |
| TCAACGCAATTGGGGAAACA+TGG | 0.567028 | 8.4:+52790475 | MS.gene38834:CDS |
| TAAAGAACCACCGTGCTCGC+CGG | 0.568946 | 8.4:+52793640 | MS.gene38834:CDS |
| CCAATAGGCGGTGCTGCCGG+TGG | 0.569271 | 8.4:+52793831 | MS.gene38834:intron |
| TTGAAATATCAACGCAATTG+GGG | 0.574459 | 8.4:+52790467 | MS.gene38834:CDS |
| GTGCGTGAAGGCGCATGTGG+TGG | 0.580744 | 8.4:+52793603 | MS.gene38834:intron |
| GTTGGGTTGCACCAGAAAAG+TGG | 0.580977 | 8.4:+52793696 | MS.gene38834:CDS |
| AGAAACTTGGCCCTGGAATG+GGG | 0.582570 | 8.4:+52792553 | MS.gene38834:CDS |
| TCCTGCTGTTGGGTTTGAAG+GGG | 0.588047 | 8.4:+52790573 | MS.gene38834:CDS |
| CCTGAAGAAATAGGTAGCAG+AGG | 0.588385 | 8.4:+52792652 | MS.gene38834:CDS |
| CACTAGTATGAACCATATCT+GGG | 0.588414 | 8.4:+52793450 | MS.gene38834:CDS |
| TTGTGCTTCACTGCTGCCGG+TGG | 0.599417 | 8.4:-52793863 | None:intergenic |
| GTATGAACCATATCTGGGAA+AGG | 0.601010 | 8.4:+52793455 | MS.gene38834:CDS |
| GGTCCAATAGGTGACACTCC+TGG | 0.603194 | 8.4:+52792613 | MS.gene38834:CDS |
| AAGGCGCATGTGGTGGCTGG+TGG | 0.604103 | 8.4:+52793610 | MS.gene38834:intron |
| CCGGAGAATCCAGAGGTGGT+TGG | 0.606578 | 8.4:+52793659 | MS.gene38834:CDS |
| AATGCCTCTGTATAAACTTG+GGG | 0.607132 | 8.4:+52792684 | MS.gene38834:CDS |
| CCAAGAAGCTCCATAATGCA+AGG | 0.608499 | 8.4:-52792266 | None:intergenic |
| GAAGCAAGTTCTTCAATCTG+CGG | 0.609928 | 8.4:+52790525 | MS.gene38834:CDS |
| ATAATCTGTTCCCCATTCCA+GGG | 0.611081 | 8.4:-52792563 | None:intergenic |
| GGATTCTCCGGCGAGCACGG+TGG | 0.616823 | 8.4:-52793647 | None:intergenic |
| TGTGAGGAAGCAGGAAGATG+CGG | 0.618720 | 8.4:+52790597 | MS.gene38834:CDS |
| TTCTCCCCAAGTTTATACAG+AGG | 0.622115 | 8.4:-52792688 | None:intergenic |
| TGAAGAAAGGGGCACCAGGT+AGG | 0.625137 | 8.4:+52792203 | MS.gene38834:CDS |
| GGAGTGTCACCTATTGGACC+CGG | 0.626244 | 8.4:-52792610 | None:intergenic |
| CCAGGTAGGAACTCTTCTAG+TGG | 0.630230 | 8.4:+52792217 | MS.gene38834:CDS |
| GTGGTGCGTGAAGGCGCATG+TGG | 0.631963 | 8.4:+52793600 | MS.gene38834:intron |
| AGGTAGGAACTCTTCTAGTG+GGG | 0.641354 | 8.4:+52792219 | MS.gene38834:CDS |
| ATTGGGGAAACATGGAGCGT+CGG | 0.642414 | 8.4:+52790483 | MS.gene38834:CDS |
| GGAGAAATGGGATATTGCAA+TGG | 0.644314 | 8.4:+52792705 | MS.gene38834:CDS |
| CTCGCCGGAGAATCCAGAGG+TGG | 0.649898 | 8.4:+52793655 | MS.gene38834:CDS |
| GGTAGGAACTCTTCTAGTGG+GGG | 0.667715 | 8.4:+52792220 | MS.gene38834:CDS |
| AAAGTAGCTTTAATAACTGG+CGG | 0.668949 | 8.4:+52790427 | MS.gene38834:CDS |
| GTGCTCGCCGGAGAATCCAG+AGG | 0.691093 | 8.4:+52793652 | MS.gene38834:CDS |
| ACTTAAGTATCTGAAGAAAG+GGG | 0.691268 | 8.4:+52792192 | MS.gene38834:CDS |
| CGTCACCAGAACATGACAGG+AGG | 0.707318 | 8.4:+52793481 | MS.gene38834:CDS |
| GGCAGCTGGTTATTGCACAG+CGG | 0.733473 | 8.4:+52793717 | MS.gene38834:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATAATTATGTAATTAT+AGG | + | chr8.4:52793019-52793038 | MS.gene38834:intron | 10.0% |
| !! | GATATAATTATGTAATTATA+GGG | + | chr8.4:52793020-52793039 | MS.gene38834:intron | 10.0% |
| !! | TAAAAATAATAATGCATAAA+AGG | - | chr8.4:52793055-52793074 | None:intergenic | 10.0% |
| !!! | ATTTTCATCTTTTTAATTTA+AGG | + | chr8.4:52792342-52792361 | MS.gene38834:intron | 10.0% |
| !!! | TAAAATTTTAATTATTCAAC+AGG | + | chr8.4:52792510-52792529 | MS.gene38834:intron | 10.0% |
| !!! | TTTATGCATTATTATTTTTA+TGG | + | chr8.4:52793055-52793074 | MS.gene38834:intron | 10.0% |
| !!! | TTTTTAATTTAAGGATTTAA+AGG | + | chr8.4:52792351-52792370 | MS.gene38834:intron | 10.0% |
| !!! | AAATGATTTTGCAATAATTT+AGG | - | chr8.4:52791852-52791871 | None:intergenic | 15.0% |
| !!! | AATGATTTTGCAATAATTTA+GGG | - | chr8.4:52791851-52791870 | None:intergenic | 15.0% |
| !!! | AATTGATATTTTTGGTATAA+GGG | - | chr8.4:52793090-52793109 | None:intergenic | 15.0% |
| !!! | ATATGTAGATTTTAAAATCA+AGG | - | chr8.4:52791636-52791655 | None:intergenic | 15.0% |
| !!! | TAAGTATTTCTTTCATTTTA+AGG | - | chr8.4:52790998-52791017 | None:intergenic | 15.0% |
| !! | AAAGATGAAAATTAACATCT+AGG | - | chr8.4:52792334-52792353 | None:intergenic | 20.0% |
| !! | AAGCTTAAAGTAAGTTTAAT+GGG | - | chr8.4:52792491-52792510 | None:intergenic | 20.0% |
| !! | ATTCAATTAACGTATGTATT+TGG | + | chr8.4:52790812-52790831 | MS.gene38834:intron | 20.0% |
| !! | ATTTGAATTGCATAAAATCA+TGG | + | chr8.4:52791663-52791682 | MS.gene38834:intron | 20.0% |
| !! | GAATCTAAAAAGTAAAATTG+AGG | - | chr8.4:52790796-52790815 | None:intergenic | 20.0% |
| !! | GCAAAATAATATATCTTCAT+TGG | - | chr8.4:52792415-52792434 | None:intergenic | 20.0% |
| !! | GCTAAACAACTTAAAAAAAA+AGG | - | chr8.4:52791218-52791237 | None:intergenic | 20.0% |
| !! | TAAGCTTAAAGTAAGTTTAA+TGG | - | chr8.4:52792492-52792511 | None:intergenic | 20.0% |
| !! | TATACCAAAAATATCAATTG+TGG | + | chr8.4:52793091-52793110 | MS.gene38834:intron | 20.0% |
| !! | TATTACAAAAATACGCAAAA+TGG | - | chr8.4:52793141-52793160 | None:intergenic | 20.0% |
| !!! | CAATTGATATTTTTGGTATA+AGG | - | chr8.4:52793091-52793110 | None:intergenic | 20.0% |
| !!! | TGTCTATTTAGTAGTTATTT+TGG | + | chr8.4:52790939-52790958 | MS.gene38834:intron | 20.0% |
| !!! | TTCATTATTGTTTGAAGTTT+TGG | + | chr8.4:52792129-52792148 | MS.gene38834:intron | 20.0% |
| ! | AAGTTATGAAAATGTTTCCA+AGG | - | chr8.4:52792847-52792866 | None:intergenic | 25.0% |
| ! | AATACATTTCTTAGAAATCG+AGG | - | chr8.4:52791139-52791158 | None:intergenic | 25.0% |
| ! | ACTTACTTAACCGTTTAAAA+AGG | - | chr8.4:52791240-52791259 | None:intergenic | 25.0% |
| ! | ATTATGATATTCGAGTCAAT+GGG | + | chr8.4:52792581-52792600 | MS.gene38834:CDS | 25.0% |
| ! | CATCAAATAGCTAATGTATA+TGG | - | chr8.4:52790851-52790870 | None:intergenic | 25.0% |
| ! | CATGATTAATTAGTAGTGTT+TGG | + | chr8.4:52792902-52792921 | MS.gene38834:intron | 25.0% |
| ! | CTAAAAAGTAAAATTGAGGA+CGG | - | chr8.4:52790792-52790811 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGTTCAATTGA+TGG | + | chr8.4:52791684-52791703 | MS.gene38834:intron | 25.0% |
| ! | GTTAATCATGTTTAAATCTG+TGG | - | chr8.4:52791614-52791633 | None:intergenic | 25.0% |
| ! | TACCATTAATAATCATCTGT+GGG | + | chr8.4:52793308-52793327 | MS.gene38834:intron | 25.0% |
| ! | TGTAAATTAGATAAGAGTCT+TGG | - | chr8.4:52792044-52792063 | None:intergenic | 25.0% |
| ! | TTAATTAGTAGTGTTTGGTT+TGG | + | chr8.4:52792907-52792926 | MS.gene38834:intron | 25.0% |
| ! | TTCAAACCAGAAATCTTAAA+AGG | + | chr8.4:52790403-52790422 | MS.gene38834:CDS | 25.0% |
| !! | AAATTCTACAACCTTTTGAA+TGG | - | chr8.4:52791792-52791811 | None:intergenic | 25.0% |
| !! | AGTATAAATCAGTTTTACAC+TGG | + | chr8.4:52792386-52792405 | MS.gene38834:intron | 25.0% |
| !! | ATGCTATTTGAACATCAATT+TGG | - | chr8.4:52791821-52791840 | None:intergenic | 25.0% |
| !! | CATTTCTCGTATTCAATTTT+AGG | - | chr8.4:52792094-52792113 | None:intergenic | 25.0% |
| !! | TATAAGTTTTTATCCAAGCA+GGG | + | chr8.4:52791541-52791560 | MS.gene38834:intron | 25.0% |
| !! | TTATAAGTTTTTATCCAAGC+AGG | + | chr8.4:52791540-52791559 | MS.gene38834:intron | 25.0% |
| !! | TTTGAAATATCAACGCAATT+GGG | + | chr8.4:52790466-52790485 | MS.gene38834:CDS | 25.0% |
| !!! | AGCTTTGGTTAATAGATTTT+CGG | + | chr8.4:52791284-52791303 | MS.gene38834:intron | 25.0% |
| !!! | AGTTGTTTAGCCTTTTTAAA+CGG | + | chr8.4:52791227-52791246 | MS.gene38834:intron | 25.0% |
| !!! | CTGTAAATGTTGTATTTTTG+TGG | + | chr8.4:52792807-52792826 | MS.gene38834:intron | 25.0% |
| !!! | GATTTGACTTTTAAGCATTT+TGG | + | chr8.4:52790631-52790650 | MS.gene38834:CDS | 25.0% |
| !!! | TTTAAGATTTCTGGTTTGAA+TGG | - | chr8.4:52790403-52790422 | None:intergenic | 25.0% |
| AAATGCCTCTGTATAAACTT+GGG | + | chr8.4:52792683-52792702 | MS.gene38834:CDS | 30.0% | |
| AACAAAATACTTCCAATAGG+CGG | + | chr8.4:52793819-52793838 | MS.gene38834:intron | 30.0% | |
| ACTTAAGTATCTGAAGAAAG+GGG | + | chr8.4:52792192-52792211 | MS.gene38834:CDS | 30.0% | |
| AGCTTACGAAAACAACTTAT+AGG | + | chr8.4:52791439-52791458 | MS.gene38834:intron | 30.0% | |
| AGGAACAAAATACTTCCAAT+AGG | + | chr8.4:52793816-52793835 | MS.gene38834:intron | 30.0% | |
| ATCAGAATCCTTCTATAATG+TGG | + | chr8.4:52791985-52792004 | MS.gene38834:intron | 30.0% | |
| ATTTCTTAGAAATCGAGGTT+GGG | - | chr8.4:52791134-52791153 | None:intergenic | 30.0% | |
| CACTAATATGATCCATATGT+GGG | + | chr8.4:52793384-52793403 | MS.gene38834:intron | 30.0% | |
| CACTTAAGTATCTGAAGAAA+GGG | + | chr8.4:52792191-52792210 | MS.gene38834:CDS | 30.0% | |
| GATTATGATATTCGAGTCAA+TGG | + | chr8.4:52792580-52792599 | MS.gene38834:CDS | 30.0% | |
| GTACCATTAATAATCATCTG+TGG | + | chr8.4:52793307-52793326 | MS.gene38834:intron | 30.0% | |
| GTAGTGAAATTAGACAGTAT+AGG | + | chr8.4:52792990-52793009 | MS.gene38834:intron | 30.0% | |
| TTCCCACAGATGATTATTAA+TGG | - | chr8.4:52793313-52793332 | None:intergenic | 30.0% | |
| TTGAAATATCAACGCAATTG+GGG | + | chr8.4:52790467-52790486 | MS.gene38834:CDS | 30.0% | |
| TTGCAATTTCGATGCATTTA+GGG | + | chr8.4:52791158-52791177 | MS.gene38834:intron | 30.0% | |
| TTTGCAATTTCGATGCATTT+AGG | + | chr8.4:52791157-52791176 | MS.gene38834:intron | 30.0% | |
| ! | AACCTTTTGAATGGTTAACA+CGG | - | chr8.4:52791783-52791802 | None:intergenic | 30.0% |
| ! | CACACCACAATTGATATTTT+TGG | - | chr8.4:52793098-52793117 | None:intergenic | 30.0% |
| ! | GTTTGAAATATCAACGCAAT+TGG | + | chr8.4:52790465-52790484 | MS.gene38834:CDS | 30.0% |
| ! | TGACTTTTAAGCATTTTGGA+AGG | + | chr8.4:52790635-52790654 | MS.gene38834:CDS | 30.0% |
| !! | AAAGTAGCTTTAATAACTGG+CGG | + | chr8.4:52790427-52790446 | MS.gene38834:CDS | 30.0% |
| !! | ATAAGTTTTGTGAGGTTGTT+TGG | + | chr8.4:52791344-52791363 | MS.gene38834:intron | 30.0% |
| !! | CTACTATCATAAGTTTTGTG+AGG | + | chr8.4:52791336-52791355 | MS.gene38834:intron | 30.0% |
| !! | GTTGTTTTCGTAAGCTATAT+AGG | - | chr8.4:52791435-52791454 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGGTTGTTT+GGG | + | chr8.4:52791345-52791364 | MS.gene38834:intron | 30.0% |
| !!! | ACTTTGCCTTTTAAGATTTC+TGG | - | chr8.4:52790412-52790431 | None:intergenic | 30.0% |
| !!! | AGGATTTTTGTTGTTTTCGA+TGG | + | chr8.4:52790740-52790759 | MS.gene38834:intron | 30.0% |
| !!! | ATTGGAAGTATTTTGTTCCT+AGG | - | chr8.4:52793816-52793835 | None:intergenic | 30.0% |
| !!! | GATATTTTTGGTATAAGGGT+AGG | - | chr8.4:52793086-52793105 | None:intergenic | 30.0% |
| !!! | TTGGAAGTATTTTGTTCCTA+GGG | - | chr8.4:52793815-52793834 | None:intergenic | 30.0% |
| AAAAGTAAAATTGAGGACGG+AGG | - | chr8.4:52790789-52790808 | None:intergenic | 35.0% | |
| AATGCCTCTGTATAAACTTG+GGG | + | chr8.4:52792684-52792703 | MS.gene38834:CDS | 35.0% | |
| AATTCATGTATCTGCAGCAA+AGG | + | chr8.4:52792294-52792313 | MS.gene38834:CDS | 35.0% | |
| ACCATCAAAGTGATCATCAA+CGG | + | chr8.4:52793275-52793294 | MS.gene38834:intron | 35.0% | |
| ACTAACGAAAAACAGCTTTG+AGG | - | chr8.4:52790966-52790985 | None:intergenic | 35.0% | |
| AGGATACTAAAGACACTATG+TGG | - | chr8.4:52791198-52791217 | None:intergenic | 35.0% | |
| AGTATCGCATATACCAAGTA+GGG | - | chr8.4:52792789-52792808 | None:intergenic | 35.0% | |
| ATATGTCATGTATGCTTCAG+AGG | - | chr8.4:52793224-52793243 | None:intergenic | 35.0% | |
| ATTAGTGCTACCTTGCATTA+TGG | + | chr8.4:52792256-52792275 | MS.gene38834:CDS | 35.0% | |
| CAATAGCATAGTTCAATGAG+TGG | - | chr8.4:52791744-52791763 | None:intergenic | 35.0% | |
| CACTAGTATGAACCATATCT+GGG | + | chr8.4:52793450-52793469 | MS.gene38834:CDS | 35.0% | |
| CATTTCTTAGAAATCGAGGT+TGG | - | chr8.4:52791135-52791154 | None:intergenic | 35.0% | |
| CCACATATGGATCATATTAG+TGG | - | chr8.4:52793386-52793405 | None:intergenic | 35.0% | |
| CCACTAATATGATCCATATG+TGG | + | chr8.4:52793383-52793402 | MS.gene38834:intron | 35.0% | |
| GAAATGCCTCTGTATAAACT+TGG | + | chr8.4:52792682-52792701 | MS.gene38834:CDS | 35.0% | |
| GCACTTAAGTATCTGAAGAA+AGG | + | chr8.4:52792190-52792209 | MS.gene38834:CDS | 35.0% | |
| GGATACTAAAGACACTATGT+GGG | - | chr8.4:52791197-52791216 | None:intergenic | 35.0% | |
| GTATAAACTTGGGGAGAAAT+GGG | + | chr8.4:52792693-52792712 | MS.gene38834:CDS | 35.0% | |
| GTTGTTAAAGAGTCTCACAT+CGG | + | chr8.4:52791023-52791042 | MS.gene38834:intron | 35.0% | |
| TGATTCCACTACAAGAAACT+TGG | + | chr8.4:52792540-52792559 | MS.gene38834:CDS | 35.0% | |
| TGCAATTTCGATGCATTTAG+GGG | + | chr8.4:52791159-52791178 | MS.gene38834:intron | 35.0% | |
| TGTATAAACTTGGGGAGAAA+TGG | + | chr8.4:52792692-52792711 | MS.gene38834:CDS | 35.0% | |
| ! | ACTACTCATCTGAAACACAA+TGG | - | chr8.4:52792017-52792036 | None:intergenic | 35.0% |
| ! | GTGTTTAGGATTCCATGTTT+GGG | + | chr8.4:52792938-52792957 | MS.gene38834:intron | 35.0% |
| ! | TTGGTTAATAGATTTTCGGC+TGG | + | chr8.4:52791288-52791307 | MS.gene38834:intron | 35.0% |
| !! | CTACTTCTCATTGACTTTGA+AGG | - | chr8.4:52792870-52792889 | None:intergenic | 35.0% |
| !! | GCTGCTGTATATTTTTCAGT+TGG | - | chr8.4:52793793-52793812 | None:intergenic | 35.0% |
| !! | GGCAAAGTAGCTTTAATAAC+TGG | + | chr8.4:52790424-52790443 | MS.gene38834:CDS | 35.0% |
| !! | TAATAGATTTTCGGCTGGTT+TGG | + | chr8.4:52791293-52791312 | MS.gene38834:intron | 35.0% |
| !! | TTCTGGTTTGAATGGTGATT+CGG | - | chr8.4:52790395-52790414 | None:intergenic | 35.0% |
| !! | TTTTTGGTATAAGGGTAGGA+AGG | - | chr8.4:52793082-52793101 | None:intergenic | 35.0% |
| !!! | GTTTTGGATATCGATTCTGT+TGG | + | chr8.4:52792145-52792164 | MS.gene38834:intron | 35.0% |
| AAGTGTCTATACGTGTACGT+GGG | + | chr8.4:52791064-52791083 | MS.gene38834:intron | 40.0% | |
| ACCAAAGCAAAACCCAAACA+TGG | - | chr8.4:52792953-52792972 | None:intergenic | 40.0% | |
| AGTTCTTCAATCTGCGGTTT+CGG | + | chr8.4:52790531-52790550 | MS.gene38834:CDS | 40.0% | |
| ATAATCTGTTCCCCATTCCA+GGG | - | chr8.4:52792566-52792585 | None:intergenic | 40.0% | |
| ATATGTGGGAAAGTCACCAT+CGG | + | chr8.4:52793398-52793417 | MS.gene38834:intron | 40.0% | |
| ATGCTATTGCTAACCACATG+CGG | + | chr8.4:52791755-52791774 | MS.gene38834:intron | 40.0% | |
| ATTCTTGTTAATGCTGCTGC+TGG | + | chr8.4:52790664-52790683 | MS.gene38834:CDS | 40.0% | |
| CAGTATCGCATATACCAAGT+AGG | - | chr8.4:52792790-52792809 | None:intergenic | 40.0% | |
| CCACTAGTATGAACCATATC+TGG | + | chr8.4:52793449-52793468 | MS.gene38834:CDS | 40.0% | |
| CCAGATATGGTTCATACTAG+TGG | - | chr8.4:52793452-52793471 | None:intergenic | 40.0% | |
| CCATCAAAGTGATCATCAAC+GGG | + | chr8.4:52793276-52793295 | MS.gene38834:intron | 40.0% | |
| CTAATACAACCCCACAAAAC+CGG | - | chr8.4:52791110-52791129 | None:intergenic | 40.0% | |
| GAAAAATATACAGCAGCCCT+AGG | + | chr8.4:52793796-52793815 | MS.gene38834:intron | 40.0% | |
| GAAGCAAGTTCTTCAATCTG+CGG | + | chr8.4:52790525-52790544 | MS.gene38834:CDS | 40.0% | |
| GACCGTGTTAACCATTCAAA+AGG | + | chr8.4:52791778-52791797 | MS.gene38834:intron | 40.0% | |
| GGAGAAATGGGATATTGCAA+TGG | + | chr8.4:52792705-52792724 | MS.gene38834:CDS | 40.0% | |
| GGTCATTGCCACATTATAGA+AGG | - | chr8.4:52791996-52792015 | None:intergenic | 40.0% | |
| GTATGAACCATATCTGGGAA+AGG | + | chr8.4:52793455-52793474 | MS.gene38834:CDS | 40.0% | |
| TAAGTGTCTATACGTGTACG+TGG | + | chr8.4:52791063-52791082 | MS.gene38834:intron | 40.0% | |
| TATACCAAGTAGGGAACACT+TGG | - | chr8.4:52792780-52792799 | None:intergenic | 40.0% | |
| TATCCAAGCAGGGTCATATT+AGG | + | chr8.4:52791551-52791570 | MS.gene38834:intron | 40.0% | |
| TGACTCACGTGTAAATGAAG+TGG | + | chr8.4:52791260-52791279 | MS.gene38834:intron | 40.0% | |
| TGATCATCAACGGGAAAAGA+AGG | + | chr8.4:52793285-52793304 | MS.gene38834:intron | 40.0% | |
| TGTAAATGAAGTGGCAGCTT+TGG | + | chr8.4:52791269-52791288 | MS.gene38834:intron | 40.0% | |
| TTAACGAGAGTAGAGTGATG+TGG | - | chr8.4:52792437-52792456 | None:intergenic | 40.0% | |
| TTATCCAAGTGTTCCCTACT+TGG | + | chr8.4:52792773-52792792 | MS.gene38834:intron | 40.0% | |
| TTCTCCCCAAGTTTATACAG+AGG | - | chr8.4:52792691-52792710 | None:intergenic | 40.0% | |
| TTCTTGTTAATGCTGCTGCT+GGG | + | chr8.4:52790665-52790684 | MS.gene38834:CDS | 40.0% | |
| TTGTCTGTGACAAGTCTCAA+AGG | - | chr8.4:52791940-52791959 | None:intergenic | 40.0% | |
| ! | AAACTGGCTCCTGAAGAAAT+AGG | + | chr8.4:52792643-52792662 | MS.gene38834:CDS | 40.0% |
| ! | GGTGTTTAGGATTCCATGTT+TGG | + | chr8.4:52792937-52792956 | MS.gene38834:intron | 40.0% |
| !! | TCCATGTTTGGGTTTTGCTT+TGG | + | chr8.4:52792949-52792968 | MS.gene38834:intron | 40.0% |
| AAGAAACTTGGCCCTGGAAT+GGG | + | chr8.4:52792552-52792571 | MS.gene38834:CDS | 45.0% | |
| ACACCTAATATGACCCTGCT+TGG | - | chr8.4:52791557-52791576 | None:intergenic | 45.0% | |
| ACCACTGGATTAATCGTCGA+TGG | + | chr8.4:52793348-52793367 | MS.gene38834:intron | 45.0% | |
| AGGTAGGAACTCTTCTAGTG+GGG | + | chr8.4:52792219-52792238 | MS.gene38834:CDS | 45.0% | |
| ATTCCTGCTGTTGGGTTTGA+AGG | + | chr8.4:52790571-52790590 | MS.gene38834:CDS | 45.0% | |
| CAGGTAGGAACTCTTCTAGT+GGG | + | chr8.4:52792218-52792237 | MS.gene38834:CDS | 45.0% | |
| CATAATCTGTTCCCCATTCC+AGG | - | chr8.4:52792567-52792586 | None:intergenic | 45.0% | |
| CCAAGAAGCTCCATAATGCA+AGG | - | chr8.4:52792269-52792288 | None:intergenic | 45.0% | |
| CCACTGGATTAATCGTCGAT+GGG | + | chr8.4:52793349-52793368 | MS.gene38834:intron | 45.0% | |
| CCTGAAGAAATAGGTAGCAG+AGG | + | chr8.4:52792652-52792671 | MS.gene38834:CDS | 45.0% | |
| CCTTGCATTATGGAGCTTCT+TGG | + | chr8.4:52792266-52792285 | MS.gene38834:CDS | 45.0% | |
| CGATTAATCCAGTGGTGACT+CGG | - | chr8.4:52793344-52793363 | None:intergenic | 45.0% | |
| CTCTTCTTAGCATCAGATGC+AGG | + | chr8.4:52792733-52792752 | MS.gene38834:CDS | 45.0% | |
| GATGGTGACTTTCCCACATA+TGG | - | chr8.4:52793399-52793418 | None:intergenic | 45.0% | |
| TCAACGCAATTGGGGAAACA+TGG | + | chr8.4:52790475-52790494 | MS.gene38834:CDS | 45.0% | |
| TCACCTGTTCGAAACCCATT+CGG | - | chr8.4:52790721-52790740 | None:intergenic | 45.0% | |
| TGCTATTGCTAACCACATGC+GGG | + | chr8.4:52791756-52791775 | MS.gene38834:intron | 45.0% | |
| TGGTGACTATCTGAAAGCCT+TGG | + | chr8.4:52792827-52792846 | MS.gene38834:intron | 45.0% | |
| TTCCTGCTGTTGGGTTTGAA+GGG | + | chr8.4:52790572-52790591 | MS.gene38834:CDS | 45.0% | |
| TTTAATAACTGGCGGAGCGT+CGG | + | chr8.4:52790435-52790454 | MS.gene38834:CDS | 45.0% | |
| ! | CCTCTGCTACCTATTTCTTC+AGG | - | chr8.4:52792655-52792674 | None:intergenic | 45.0% |
| ! | GAATTTTCTTGCTGCTGCTG+AGG | + | chr8.4:52790687-52790706 | MS.gene38834:CDS | 45.0% |
| !! | AGTGTTTGGTTTGGACTTGC+TGG | + | chr8.4:52792916-52792935 | MS.gene38834:intron | 45.0% |
| !! | CCCGTTGATGATCACTTTGA+TGG | - | chr8.4:52793279-52793298 | None:intergenic | 45.0% |
| !! | GTTTGGACTTGCTGGTGTTT+AGG | + | chr8.4:52792924-52792943 | MS.gene38834:intron | 45.0% |
| !! | TTGGTGACAGTCTAGCTTTC+TGG | + | chr8.4:52792968-52792987 | MS.gene38834:intron | 45.0% |
| !!! | ATAACCAGCTGCCACTTTTC+TGG | - | chr8.4:52793710-52793729 | None:intergenic | 45.0% |
| !!! | GATTTTCGGCTGGTTTGGAT+TGG | + | chr8.4:52791298-52791317 | MS.gene38834:intron | 45.0% |
| ACAGGAGGAGTTGCGATTGT+TGG | + | chr8.4:52793496-52793515 | MS.gene38834:CDS | 50.0% | |
| ACCATCGGATTGATCGTCGA+TGG | + | chr8.4:52793413-52793432 | MS.gene38834:intron | 50.0% | |
| AGAAACTTGGCCCTGGAATG+GGG | + | chr8.4:52792553-52792572 | MS.gene38834:CDS | 50.0% | |
| AGTCGTCACCAGAACATGAC+AGG | + | chr8.4:52793478-52793497 | MS.gene38834:CDS | 50.0% | |
| ATGGTGTGAAGGAAGGTCAC+TGG | + | chr8.4:52793743-52793762 | MS.gene38834:intron | 50.0% | |
| ATTGGGGAAACATGGAGCGT+CGG | + | chr8.4:52790483-52790502 | MS.gene38834:CDS | 50.0% | |
| CAACTCCTCCTGTCATGTTC+TGG | - | chr8.4:52793489-52793508 | None:intergenic | 50.0% | |
| CAAGAAACTTGGCCCTGGAA+TGG | + | chr8.4:52792551-52792570 | MS.gene38834:CDS | 50.0% | |
| CACTACAAGAAACTTGGCCC+TGG | + | chr8.4:52792546-52792565 | MS.gene38834:CDS | 50.0% | |
| CACTCCTGGCATGAGTAAAC+TGG | + | chr8.4:52792627-52792646 | MS.gene38834:CDS | 50.0% | |
| CAGGGCCAAGTTTCTTGTAG+TGG | - | chr8.4:52792548-52792567 | None:intergenic | 50.0% | |
| CCACTAGAAGAGTTCCTACC+TGG | - | chr8.4:52792220-52792239 | None:intergenic | 50.0% | |
| CCAGGTAGGAACTCTTCTAG+TGG | + | chr8.4:52792217-52792236 | MS.gene38834:CDS | 50.0% | |
| CCATCGGATTGATCGTCGAT+GGG | + | chr8.4:52793414-52793433 | MS.gene38834:intron | 50.0% | |
| CCCATCGACGATTAATCCAG+TGG | - | chr8.4:52793352-52793371 | None:intergenic | 50.0% | |
| CGCTTTCGATTCCTGCTGTT+GGG | + | chr8.4:52790563-52790582 | MS.gene38834:CDS | 50.0% | |
| CTGAGGATCTTTCGCCGAAT+GGG | + | chr8.4:52790704-52790723 | MS.gene38834:CDS | 50.0% | |
| GACGACTCCTTTCCCAGATA+TGG | - | chr8.4:52793465-52793484 | None:intergenic | 50.0% | |
| GATCGTCGATGGGAAGGAAA+AGG | + | chr8.4:52793424-52793443 | MS.gene38834:intron | 50.0% | |
| GGTAGGAACTCTTCTAGTGG+GGG | + | chr8.4:52792220-52792239 | MS.gene38834:CDS | 50.0% | |
| GGTTATTGCACAGCGGGAAA+TGG | + | chr8.4:52793724-52793743 | MS.gene38834:CDS | 50.0% | |
| GTGAAGGAAGGTCACTGGAA+GGG | + | chr8.4:52793748-52793767 | MS.gene38834:intron | 50.0% | |
| TATAGTCACCGAGTCACCAC+TGG | + | chr8.4:52793333-52793352 | MS.gene38834:intron | 50.0% | |
| TCCTGCTGTTGGGTTTGAAG+GGG | + | chr8.4:52790573-52790592 | MS.gene38834:CDS | 50.0% | |
| TCGAGTCAATGGGATTGCAC+CGG | + | chr8.4:52792591-52792610 | MS.gene38834:CDS | 50.0% | |
| TCGCTTTCGATTCCTGCTGT+TGG | + | chr8.4:52790562-52790581 | MS.gene38834:CDS | 50.0% | |
| TCTTTGTGCTTCACTGCTGC+CGG | - | chr8.4:52793869-52793888 | None:intergenic | 50.0% | |
| TGTGAAGGAAGGTCACTGGA+AGG | + | chr8.4:52793747-52793766 | MS.gene38834:intron | 50.0% | |
| TGTGAGGAAGCAGGAAGATG+CGG | + | chr8.4:52790597-52790616 | MS.gene38834:CDS | 50.0% | |
| TTGGGTTTGAAGGGGATGTG+AGG | + | chr8.4:52790581-52790600 | MS.gene38834:CDS | 50.0% | |
| ! | CGATTGTTGGCGCTGAAAGA+TGG | + | chr8.4:52793509-52793528 | MS.gene38834:CDS | 50.0% |
| ! | GAATGGGTTTCGAACAGGTG+AGG | + | chr8.4:52790720-52790739 | MS.gene38834:intron | 50.0% |
| ! | GTTGGGTTGCACCAGAAAAG+TGG | + | chr8.4:52793696-52793715 | MS.gene38834:CDS | 50.0% |
| ! | TTAATAACTGGCGGAGCGTC+GGG | + | chr8.4:52790436-52790455 | MS.gene38834:CDS | 50.0% |
| ! | TTGTTGGCGCTGAAAGATGG+TGG | + | chr8.4:52793512-52793531 | MS.gene38834:intron | 50.0% |
| !! | AATCCAGAGGTGGTTGGTGA+CGG | + | chr8.4:52793665-52793684 | MS.gene38834:CDS | 50.0% |
| !! | ATGCCAGGAGTGTCACCTAT+TGG | - | chr8.4:52792619-52792638 | None:intergenic | 50.0% |
| !! | TATCTGAAGAAAGGGGCACC+AGG | + | chr8.4:52792199-52792218 | MS.gene38834:CDS | 50.0% |
| !!! | ACCTCACATGCCGGTTTTGT+GGG | + | chr8.4:52791097-52791116 | MS.gene38834:intron | 50.0% |
| ACCACCACATTCTCCGTGCT+TGG | - | chr8.4:52793585-52793604 | None:intergenic | 55.0% | |
| CAAAACCGGCATGTGAGGTG+AGG | - | chr8.4:52791096-52791115 | None:intergenic | 55.0% | |
| CACAGCGGGAAATGGTGTGA+AGG | + | chr8.4:52793732-52793751 | MS.gene38834:intron | 55.0% | |
| CCAACCACCTCTGGATTCTC+CGG | - | chr8.4:52793662-52793681 | None:intergenic | 55.0% | |
| CCCATCGACGATCAATCCGA+TGG | - | chr8.4:52793417-52793436 | None:intergenic | 55.0% | |
| CGAATCTAGAGGCAGCGTGT+GGG | + | chr8.4:52793557-52793576 | MS.gene38834:intron | 55.0% | |
| CGAGTCAATGGGATTGCACC+GGG | + | chr8.4:52792592-52792611 | MS.gene38834:CDS | 55.0% | |
| CGGATTGATCGTCGATGGGA+AGG | + | chr8.4:52793418-52793437 | MS.gene38834:intron | 55.0% | |
| CGTCACCAGAACATGACAGG+AGG | + | chr8.4:52793481-52793500 | MS.gene38834:CDS | 55.0% | |
| GAATCTAGAGGCAGCGTGTG+GGG | + | chr8.4:52793558-52793577 | MS.gene38834:intron | 55.0% | |
| GCAATCCTCACCTCACATGC+CGG | + | chr8.4:52791088-52791107 | MS.gene38834:intron | 55.0% | |
| GCAGCTGGTTATTGCACAGC+GGG | + | chr8.4:52793718-52793737 | MS.gene38834:CDS | 55.0% | |
| GCGGGAAATGGTGTGAAGGA+AGG | + | chr8.4:52793736-52793755 | MS.gene38834:intron | 55.0% | |
| GCTCTCACACGCGAATCTAG+AGG | + | chr8.4:52793546-52793565 | MS.gene38834:intron | 55.0% | |
| GCTGAGGATCTTTCGCCGAA+TGG | + | chr8.4:52790703-52790722 | MS.gene38834:CDS | 55.0% | |
| GGAGCCAGTTTACTCATGCC+AGG | - | chr8.4:52792634-52792653 | None:intergenic | 55.0% | |
| GGCAGCTGGTTATTGCACAG+CGG | + | chr8.4:52793717-52793736 | MS.gene38834:CDS | 55.0% | |
| GGTCCAATAGGTGACACTCC+TGG | + | chr8.4:52792613-52792632 | MS.gene38834:CDS | 55.0% | |
| TAAAGAACCACCGTGCTCGC+CGG | + | chr8.4:52793640-52793659 | MS.gene38834:CDS | 55.0% | |
| TCCAAGCACGGAGAATGTGG+TGG | + | chr8.4:52793581-52793600 | MS.gene38834:intron | 55.0% | |
| TCCCCTTCAAACCCAACAGC+AGG | - | chr8.4:52790577-52790596 | None:intergenic | 55.0% | |
| TGAAGGGGATGTGAGGAAGC+AGG | + | chr8.4:52790588-52790607 | MS.gene38834:CDS | 55.0% | |
| TGCACCAGAAAAGTGGCAGC+TGG | + | chr8.4:52793703-52793722 | MS.gene38834:CDS | 55.0% | |
| ! | GAGAATGTGGTGGTGCGTGA+AGG | + | chr8.4:52793591-52793610 | MS.gene38834:intron | 55.0% |
| ! | GGAGTGTCACCTATTGGACC+CGG | - | chr8.4:52792613-52792632 | None:intergenic | 55.0% |
| ! | TCGCCGAATGGGTTTCGAAC+AGG | + | chr8.4:52790715-52790734 | MS.gene38834:CDS | 55.0% |
| !! | TGAAGAAAGGGGCACCAGGT+AGG | + | chr8.4:52792203-52792222 | MS.gene38834:CDS | 55.0% |
| !!! | CACCTCACATGCCGGTTTTG+TGG | + | chr8.4:52791096-52791115 | MS.gene38834:intron | 55.0% |
| !!! | CCTCACATGCCGGTTTTGTG+GGG | + | chr8.4:52791098-52791117 | MS.gene38834:intron | 55.0% |
| CCCCACAAAACCGGCATGTG+AGG | - | chr8.4:52791101-52791120 | None:intergenic | 60.0% | |
| CCGGAGAATCCAGAGGTGGT+TGG | + | chr8.4:52793659-52793678 | MS.gene38834:CDS | 60.0% | |
| GCGAATCTAGAGGCAGCGTG+TGG | + | chr8.4:52793556-52793575 | MS.gene38834:intron | 60.0% | |
| GGGATTGCACCGGGTCCAAT+AGG | + | chr8.4:52792601-52792620 | MS.gene38834:CDS | 60.0% | |
| GGGTCCAAGCACGGAGAATG+TGG | + | chr8.4:52793578-52793597 | MS.gene38834:intron | 60.0% | |
| GGTTAACACGGTCCCGCATG+TGG | - | chr8.4:52791771-52791790 | None:intergenic | 60.0% | |
| TCTGGATTCTCCGGCGAGCA+CGG | - | chr8.4:52793653-52793672 | None:intergenic | 60.0% | |
| TTGTGCTTCACTGCTGCCGG+TGG | - | chr8.4:52793866-52793885 | None:intergenic | 60.0% | |
| !! | AGGTGGTTGGTGACGGTGCT+CGG | + | chr8.4:52793672-52793691 | MS.gene38834:CDS | 60.0% |
| !! | CGGTTGCTGTGATGGGTCGT+CGG | + | chr8.4:52790503-52790522 | MS.gene38834:CDS | 60.0% |
| !! | CTTCCAATAGGCGGTGCTGC+CGG | + | chr8.4:52793828-52793847 | MS.gene38834:intron | 60.0% |
| !! | GGAGCGTCGGTTGCTGTGAT+GGG | + | chr8.4:52790496-52790515 | MS.gene38834:CDS | 60.0% |
| !! | TGGAGCGTCGGTTGCTGTGA+TGG | + | chr8.4:52790495-52790514 | MS.gene38834:CDS | 60.0% |
| !! | TGGTGACGGTGCTCGGTGTT+GGG | + | chr8.4:52793679-52793698 | MS.gene38834:CDS | 60.0% |
| !! | TTGGTGACGGTGCTCGGTGT+TGG | + | chr8.4:52793678-52793697 | MS.gene38834:CDS | 60.0% |
| AAGGCGCATGTGGTGGCTGG+TGG | + | chr8.4:52793610-52793629 | MS.gene38834:intron | 65.0% | |
| CAGCGTGTGGGGTCCAAGCA+CGG | + | chr8.4:52793569-52793588 | MS.gene38834:intron | 65.0% | |
| CCGGTGGCAAATGCCACCAC+CGG | + | chr8.4:52793847-52793866 | MS.gene38834:CDS | 65.0% | |
| CTCGCCGGAGAATCCAGAGG+TGG | + | chr8.4:52793655-52793674 | MS.gene38834:CDS | 65.0% | |
| GCACCGTCACCAACCACCTC+TGG | - | chr8.4:52793671-52793690 | None:intergenic | 65.0% | |
| GTGCTCGCCGGAGAATCCAG+AGG | + | chr8.4:52793652-52793671 | MS.gene38834:CDS | 65.0% | |
| TGCTTCACTGCTGCCGGTGG+TGG | - | chr8.4:52793863-52793882 | None:intergenic | 65.0% | |
| ! | CCGGTGGTGGCATTTGCCAC+CGG | - | chr8.4:52793850-52793869 | None:intergenic | 65.0% |
| ! | GTGAAGGCGCATGTGGTGGC+TGG | + | chr8.4:52793607-52793626 | MS.gene38834:intron | 65.0% |
| ! | GTGCGTGAAGGCGCATGTGG+TGG | + | chr8.4:52793603-52793622 | MS.gene38834:intron | 65.0% |
| ! | GTGGTGCGTGAAGGCGCATG+TGG | + | chr8.4:52793600-52793619 | MS.gene38834:intron | 65.0% |
| !! | ACTGGCGGAGCGTCGGGAAT+TGG | + | chr8.4:52790442-52790461 | MS.gene38834:CDS | 65.0% |
| !! | CTGGCGGAGCGTCGGGAATT+GGG | + | chr8.4:52790443-52790462 | MS.gene38834:CDS | 65.0% |
| CCACCGGCAGCACCGCCTAT+TGG | - | chr8.4:52793834-52793853 | None:intergenic | 70.0% | |
| GGATTCTCCGGCGAGCACGG+TGG | - | chr8.4:52793650-52793669 | None:intergenic | 70.0% | |
| !! | CCAATAGGCGGTGCTGCCGG+TGG | + | chr8.4:52793831-52793850 | MS.gene38834:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 52790379 | 52793891 | 52790379 | ID=MS.gene38834 |
| chr8.4 | mRNA | 52790379 | 52793891 | 52790379 | ID=MS.gene38834.t1;Parent=MS.gene38834 |
| chr8.4 | exon | 52790379 | 52790736 | 52790379 | ID=MS.gene38834.t1.exon1;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52790379 | 52790736 | 52790379 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| chr8.4 | exon | 52792146 | 52792315 | 52792146 | ID=MS.gene38834.t1.exon2;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52792146 | 52792315 | 52792146 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| chr8.4 | exon | 52792532 | 52792754 | 52792532 | ID=MS.gene38834.t1.exon3;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52792532 | 52792754 | 52792532 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| chr8.4 | exon | 52793440 | 52793530 | 52793440 | ID=MS.gene38834.t1.exon4;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52793440 | 52793530 | 52793440 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| chr8.4 | exon | 52793613 | 52793745 | 52793613 | ID=MS.gene38834.t1.exon5;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52793613 | 52793745 | 52793613 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| chr8.4 | exon | 52793838 | 52793891 | 52793838 | ID=MS.gene38834.t1.exon6;Parent=MS.gene38834.t1 |
| chr8.4 | CDS | 52793838 | 52793891 | 52793838 | ID=cds.MS.gene38834.t1;Parent=MS.gene38834.t1 |
| Gene Sequence |
| Protein sequence |
