Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38904.t1 | XP_013449864.1 | 94.2 | 138 | 8 | 0 | 1 | 138 | 1 | 138 | 1.20E-67 | 266.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38904.t1 | P49964 | 65.2 | 132 | 42 | 1 | 7 | 138 | 9 | 136 | 8.1e-46 | 184.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38904.t1 | A0A072U2F6 | 94.2 | 138 | 8 | 0 | 1 | 138 | 1 | 138 | 8.3e-68 | 266.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38904 | MS.gene75343 | PPI |
MS.gene38904 | MS.gene026743 | PPI |
MS.gene38904 | MS.gene034094 | PPI |
MS.gene38904 | MS.gene61154 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38904.t1 | MTR_7g096570 | 94.928 | 138 | 7 | 0 | 1 | 138 | 1 | 138 | 2.40e-89 | 258 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38904.t1 | AT1G48160 | 68.468 | 111 | 35 | 0 | 1 | 111 | 1 | 111 | 8.97e-55 | 171 |
MS.gene38904.t1 | AT1G48160 | 68.468 | 111 | 35 | 0 | 1 | 111 | 1 | 111 | 8.97e-55 | 171 |
Find 40 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCCTACTTGTCTTGAAAT+TGG | 0.153966 | 8.4:+50773568 | MS.gene38904:CDS |
TGGTCCTTCCATGGTGTTTA+GGG | 0.204157 | 8.4:-50775301 | None:intergenic |
TGATGCAGTCTCCTGCTTCT+TGG | 0.226752 | 8.4:-50775321 | None:intergenic |
TTGGTCCTTCCATGGTGTTT+AGG | 0.258012 | 8.4:-50775302 | None:intergenic |
ACCCTACTTGTCTTGAAATT+GGG | 0.308703 | 8.4:+50773569 | MS.gene38904:CDS |
TCATGCAAAGAGGACGAGTT+AGG | 0.334941 | 8.4:+50773764 | MS.gene38904:CDS |
GGTACAGCTTCAATTTAGTT+AGG | 0.339333 | 8.4:-50775484 | None:intergenic |
GCTGGACCTTCCAACAAATC+TGG | 0.341735 | 8.4:+50775359 | MS.gene38904:CDS |
TCCACCTTTCCCAGATTTGT+TGG | 0.371350 | 8.4:-50775369 | None:intergenic |
GAAGCTGTACCACTCGGAAA+TGG | 0.380397 | 8.4:+50775496 | MS.gene38904:CDS |
CCTGCTTCTTGGTCCTTCCA+TGG | 0.417818 | 8.4:-50775310 | None:intergenic |
AGTATATTATTCATTACAGT+TGG | 0.436559 | 8.4:+50775451 | MS.gene38904:CDS |
ACGATCCACTTCTTTATGCT+TGG | 0.447336 | 8.4:-50773469 | None:intergenic |
CCTTTCCCAGATTTGTTGGA+AGG | 0.448852 | 8.4:-50775365 | None:intergenic |
AAGCTGTACCACTCGGAAAT+GGG | 0.454190 | 8.4:+50775497 | MS.gene38904:CDS |
CCCTACTTGTCTTGAAATTG+GGG | 0.455560 | 8.4:+50773570 | MS.gene38904:CDS |
CATGCAAAGAGGACGAGTTA+GGG | 0.478286 | 8.4:+50773765 | MS.gene38904:CDS |
TCAGCAACAACGGCATCTGC+TGG | 0.482444 | 8.4:+50775341 | MS.gene38904:CDS |
CTGGACCTTCCAACAAATCT+GGG | 0.486060 | 8.4:+50775360 | MS.gene38904:CDS |
AATGTTACGCGTTGCAGAGA+TGG | 0.501374 | 8.4:+50775277 | MS.gene38904:CDS |
CCCCAATTTCAAGACAAGTA+GGG | 0.509580 | 8.4:-50773570 | None:intergenic |
TAATTAACCTCGATTGCAAA+AGG | 0.520958 | 8.4:-50773616 | None:intergenic |
CCATGGAAGGACCAAGAAGC+AGG | 0.522661 | 8.4:+50775310 | MS.gene38904:CDS |
TTCTGACATTGTAAGATGGA+AGG | 0.527164 | 8.4:+50773439 | None:intergenic |
TCCCCAATTTCAAGACAAGT+AGG | 0.528619 | 8.4:-50773571 | None:intergenic |
GTTGCTGAAGGAAGACGAAT+CGG | 0.531220 | 8.4:+50773526 | MS.gene38904:CDS |
AACTTACTCGAAGCTATGGA+TGG | 0.559095 | 8.4:-50773823 | None:intergenic |
TCCAACAAATCTGGGAAAGG+TGG | 0.573312 | 8.4:+50775368 | MS.gene38904:CDS |
TGTCTTGAAATTGGGGATTG+TGG | 0.573917 | 8.4:+50773577 | MS.gene38904:CDS |
CCGCGTGATTTCATGCAAAG+AGG | 0.574721 | 8.4:+50773754 | MS.gene38904:CDS |
CCTTCCAACAAATCTGGGAA+AGG | 0.605602 | 8.4:+50775365 | MS.gene38904:CDS |
AATTACCAAGCATAAAGAAG+TGG | 0.608084 | 8.4:+50773464 | MS.gene38904:CDS |
TAAATTGAAGCTGTACCACT+CGG | 0.613396 | 8.4:+50775490 | MS.gene38904:CDS |
TGGTCCCTAAACACCATGGA+AGG | 0.619588 | 8.4:+50775297 | MS.gene38904:CDS |
CCTCTTTGCATGAAATCACG+CGG | 0.634789 | 8.4:-50773754 | None:intergenic |
GGAGACTGCATCAGCAACAA+CGG | 0.638323 | 8.4:+50775331 | MS.gene38904:CDS |
ACTGTAATGAATAATATACT+CGG | 0.661038 | 8.4:-50775448 | None:intergenic |
CTCTTTGCATGAAATCACGC+GGG | 0.678103 | 8.4:-50773753 | None:intergenic |
GAGATGGTCCCTAAACACCA+TGG | 0.690946 | 8.4:+50775293 | MS.gene38904:CDS |
GTGCAAAACCCATTTCCGAG+TGG | 0.744959 | 8.4:-50775505 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATATATTGTTATAAAGA+CGG | - | chr8.4:50774966-50774985 | None:intergenic | 10.0% |
!! | ATCATAATTTATAATATCAT+AGG | - | chr8.4:50775066-50775085 | None:intergenic | 10.0% |
!!! | AATATTTTCAAAATGATATT+TGG | + | chr8.4:50774925-50774944 | MS.gene38904:intron | 10.0% |
!! | ATATATATTGTTATAAAGAC+GGG | - | chr8.4:50774965-50774984 | None:intergenic | 15.0% |
!! | ATATCATCAGAAATAAAAAA+TGG | - | chr8.4:50774216-50774235 | None:intergenic | 15.0% |
!! | ATCTTACAATTAATTATTAG+AGG | - | chr8.4:50774719-50774738 | None:intergenic | 15.0% |
!! | TTAGGATATAGATTTAAAAA+GGG | - | chr8.4:50774250-50774269 | None:intergenic | 15.0% |
!! | TTTCCTATTTAAATAGAATT+TGG | - | chr8.4:50774995-50775014 | None:intergenic | 15.0% |
!!! | TTCAATTTCAATTTGTTTTT+TGG | + | chr8.4:50773658-50773677 | MS.gene38904:intron | 15.0% |
!! | AATGGTAAAGGTTAAAAAAT+GGG | + | chr8.4:50774558-50774577 | MS.gene38904:intron | 20.0% |
!! | AATTAATTATTAGAGGAAAG+GGG | - | chr8.4:50774712-50774731 | None:intergenic | 20.0% |
!! | ACAATTAATTATTAGAGGAA+AGG | - | chr8.4:50774714-50774733 | None:intergenic | 20.0% |
!! | ACTGTAATGAATAATATACT+CGG | - | chr8.4:50775451-50775470 | None:intergenic | 20.0% |
!! | AGTATATTATTCATTACAGT+TGG | + | chr8.4:50775451-50775470 | MS.gene38904:CDS | 20.0% |
!! | ATTAATTGTAAGATCTGAAA+TGG | + | chr8.4:50774725-50774744 | MS.gene38904:intron | 20.0% |
!! | CAATTAATTATTAGAGGAAA+GGG | - | chr8.4:50774713-50774732 | None:intergenic | 20.0% |
!! | CTTAGGATATAGATTTAAAA+AGG | - | chr8.4:50774251-50774270 | None:intergenic | 20.0% |
!! | CTTCCAAATTCTATTTAAAT+AGG | + | chr8.4:50774989-50775008 | MS.gene38904:intron | 20.0% |
!!! | TTATGATAGCTTATTTCTTA+AGG | + | chr8.4:50775079-50775098 | MS.gene38904:intron | 20.0% |
! | AGACCATGATAATATAACAT+CGG | + | chr8.4:50774788-50774807 | MS.gene38904:intron | 25.0% |
! | ATTCATTAAATCTATGCATC+TGG | - | chr8.4:50775194-50775213 | None:intergenic | 25.0% |
! | GAATGGTAAAGGTTAAAAAA+TGG | + | chr8.4:50774557-50774576 | MS.gene38904:intron | 25.0% |
! | TAACCGATGTTATATTATCA+TGG | - | chr8.4:50774794-50774813 | None:intergenic | 25.0% |
! | TAGAAATGAAATTGAATCCT+AGG | + | chr8.4:50774093-50774112 | MS.gene38904:intron | 25.0% |
! | TCTTTATCTTCTATCTCTAT+TGG | - | chr8.4:50773886-50773905 | None:intergenic | 25.0% |
!! | TTTTCGAATTGATGTAAACA+GGG | - | chr8.4:50773501-50773520 | None:intergenic | 25.0% |
!!! | AACTACTTTAGAGTTTGATA+AGG | - | chr8.4:50774751-50774770 | None:intergenic | 25.0% |
!!! | ATGCTACTTTAGTTAAAACA+AGG | - | chr8.4:50774344-50774363 | None:intergenic | 25.0% |
!!! | TTACAAATTCAAGTTGAGTA+AGG | + | chr8.4:50774310-50774329 | MS.gene38904:intron | 25.0% |
!!! | TTTTGTTTTTATGTCTTTGC+AGG | + | chr8.4:50775245-50775264 | MS.gene38904:intron | 25.0% |
!!! | TTTTTCGAATTGATGTAAAC+AGG | - | chr8.4:50773502-50773521 | None:intergenic | 25.0% |
AAAAAACTTACTCGAAGCTA+TGG | - | chr8.4:50773830-50773849 | None:intergenic | 30.0% | |
AAAGCACAAATCAAAGAAGT+AGG | + | chr8.4:50774370-50774389 | MS.gene38904:intron | 30.0% | |
AATTACCAAGCATAAAGAAG+TGG | + | chr8.4:50773464-50773483 | MS.gene38904:CDS | 30.0% | |
AGTTACAAAATTGACCTACA+TGG | - | chr8.4:50774611-50774630 | None:intergenic | 30.0% | |
CTAAATCCTATAATTTCTGC+AGG | - | chr8.4:50774863-50774882 | None:intergenic | 30.0% | |
CTGCAGAAATTATAGGATTT+AGG | + | chr8.4:50774861-50774880 | MS.gene38904:intron | 30.0% | |
GCATTTGTGGAATTGATTAT+TGG | + | chr8.4:50773687-50773706 | MS.gene38904:intron | 30.0% | |
GTAGGACACAATAATTTACA+TGG | + | chr8.4:50774388-50774407 | MS.gene38904:intron | 30.0% | |
GTTAATAACATCACAACAGA+GGG | + | chr8.4:50774417-50774436 | MS.gene38904:intron | 30.0% | |
TAATTAACCTCGATTGCAAA+AGG | - | chr8.4:50773619-50773638 | None:intergenic | 30.0% | |
TGCAAGCATCACATATTAAA+AGG | + | chr8.4:50775138-50775157 | MS.gene38904:intron | 30.0% | |
TGTTAATAACATCACAACAG+AGG | + | chr8.4:50774416-50774435 | MS.gene38904:intron | 30.0% | |
TTCTTCTTAGAGAATGGTAA+AGG | + | chr8.4:50774546-50774565 | MS.gene38904:intron | 30.0% | |
TTTAAGCCTGCAGAAATTAT+AGG | + | chr8.4:50774854-50774873 | MS.gene38904:intron | 30.0% | |
! | GAAAAACTAGTTTACTCTGA+CGG | + | chr8.4:50774679-50774698 | MS.gene38904:intron | 30.0% |
! | GTGTTTTTCTTCTTAGAGAA+TGG | + | chr8.4:50774540-50774559 | MS.gene38904:intron | 30.0% |
!! | AGTTAATGATTTGCTCACTT+AGG | + | chr8.4:50774005-50774024 | MS.gene38904:intron | 30.0% |
!!! | CTCCAATATTTTGACTGTTT+AGG | + | chr8.4:50774275-50774294 | MS.gene38904:intron | 30.0% |
AACCCTACTTGTCTTGAAAT+TGG | + | chr8.4:50773568-50773587 | MS.gene38904:CDS | 35.0% | |
AATATCATAGGTGATCTCTC+TGG | - | chr8.4:50775054-50775073 | None:intergenic | 35.0% | |
AATCAATTCCACAAATGCGA+TGG | - | chr8.4:50773685-50773704 | None:intergenic | 35.0% | |
ACCCTACTTGTCTTGAAATT+GGG | + | chr8.4:50773569-50773588 | MS.gene38904:CDS | 35.0% | |
AGTGTTACATGCATTGCATA+TGG | - | chr8.4:50774146-50774165 | None:intergenic | 35.0% | |
CAAAATATTGGAGCATGCTT+AGG | - | chr8.4:50774268-50774287 | None:intergenic | 35.0% | |
CTCTACATTGCGAAATTTCA+TGG | - | chr8.4:50773944-50773963 | None:intergenic | 35.0% | |
GAAATTGAATCCTAGGACAA+AGG | + | chr8.4:50774100-50774119 | MS.gene38904:intron | 35.0% | |
GGCCTAAACAGTCAAAATAT+TGG | - | chr8.4:50774280-50774299 | None:intergenic | 35.0% | |
GGTACAGCTTCAATTTAGTT+AGG | - | chr8.4:50775487-50775506 | None:intergenic | 35.0% | |
TAAATTGAAGCTGTACCACT+CGG | + | chr8.4:50775490-50775509 | MS.gene38904:CDS | 35.0% | |
TACATGCATTGCATATGGTA+TGG | - | chr8.4:50774141-50774160 | None:intergenic | 35.0% | |
! | AGTTAGGGTTTTGCTCAAAA+AGG | + | chr8.4:50773780-50773799 | MS.gene38904:CDS | 35.0% |
! | TAAACTTCCTTTTGCAATCG+AGG | + | chr8.4:50773609-50773628 | MS.gene38904:CDS | 35.0% |
!! | TGAATTTGTAAAAGTGCCAC+TGG | - | chr8.4:50774301-50774320 | None:intergenic | 35.0% |
AACATGTCATCTTGCCATGT+AGG | + | chr8.4:50774594-50774613 | MS.gene38904:intron | 40.0% | |
AACTTACTCGAAGCTATGGA+TGG | - | chr8.4:50773826-50773845 | None:intergenic | 40.0% | |
ACGATCCACTTCTTTATGCT+TGG | - | chr8.4:50773472-50773491 | None:intergenic | 40.0% | |
CCCCAATTTCAAGACAAGTA+GGG | - | chr8.4:50773573-50773592 | None:intergenic | 40.0% | |
CCCTACTTGTCTTGAAATTG+GGG | + | chr8.4:50773570-50773589 | MS.gene38904:CDS | 40.0% | |
TCCCCAATTTCAAGACAAGT+AGG | - | chr8.4:50773574-50773593 | None:intergenic | 40.0% | |
TCGAAAAAGACTGTTGCTGA+AGG | + | chr8.4:50773514-50773533 | MS.gene38904:CDS | 40.0% | |
TGAATCCTAGGACAAAGGAA+TGG | + | chr8.4:50774105-50774124 | MS.gene38904:intron | 40.0% | |
TGTCTTGAAATTGGGGATTG+TGG | + | chr8.4:50773577-50773596 | MS.gene38904:CDS | 40.0% | |
! | AGTAGGGTTTTCGCATGATT+TGG | - | chr8.4:50773557-50773576 | None:intergenic | 40.0% |
! | CTTTTCCATTCCTTTGTCCT+AGG | - | chr8.4:50774113-50774132 | None:intergenic | 40.0% |
! | GTTTTGCTCAAAAAGGAGGA+TGG | + | chr8.4:50773787-50773806 | MS.gene38904:CDS | 40.0% |
! | TAGGGTTTTGCTCAAAAAGG+AGG | + | chr8.4:50773783-50773802 | MS.gene38904:CDS | 40.0% |
!! | TTTTTGGTCCATCGCATTTG+TGG | + | chr8.4:50773674-50773693 | MS.gene38904:intron | 40.0% |
!!! | ATTTTGACTGTTTAGGCCAG+TGG | + | chr8.4:50774282-50774301 | MS.gene38904:intron | 40.0% |
AAGCTGTACCACTCGGAAAT+GGG | + | chr8.4:50775497-50775516 | MS.gene38904:CDS | 45.0% | |
AATGTTACGCGTTGCAGAGA+TGG | + | chr8.4:50775277-50775296 | MS.gene38904:CDS | 45.0% | |
ATAGGTGATCTCTCTGGTGT+GGG | - | chr8.4:50775048-50775067 | None:intergenic | 45.0% | |
CATGCAAAGAGGACGAGTTA+GGG | + | chr8.4:50773765-50773784 | MS.gene38904:CDS | 45.0% | |
CCTCTTTGCATGAAATCACG+CGG | - | chr8.4:50773757-50773776 | None:intergenic | 45.0% | |
CCTTCCAACAAATCTGGGAA+AGG | + | chr8.4:50775365-50775384 | MS.gene38904:CDS | 45.0% | |
CTCTTTGCATGAAATCACGC+GGG | - | chr8.4:50773756-50773775 | None:intergenic | 45.0% | |
CTGGACCTTCCAACAAATCT+GGG | + | chr8.4:50775360-50775379 | MS.gene38904:CDS | 45.0% | |
GATCAACATAGAAGCTACGC+AGG | + | chr8.4:50774175-50774194 | MS.gene38904:intron | 45.0% | |
GATTTAGGCAGAGAGAGAGA+AGG | + | chr8.4:50774876-50774895 | MS.gene38904:intron | 45.0% | |
GTTGCTGAAGGAAGACGAAT+CGG | + | chr8.4:50773526-50773545 | MS.gene38904:CDS | 45.0% | |
TCATGCAAAGAGGACGAGTT+AGG | + | chr8.4:50773764-50773783 | MS.gene38904:CDS | 45.0% | |
TCCAACAAATCTGGGAAAGG+TGG | + | chr8.4:50775368-50775387 | MS.gene38904:CDS | 45.0% | |
TCCACCTTTCCCAGATTTGT+TGG | - | chr8.4:50775372-50775391 | None:intergenic | 45.0% | |
TGGTCCTTCCATGGTGTTTA+GGG | - | chr8.4:50775304-50775323 | None:intergenic | 45.0% | |
TTGGTCCTTCCATGGTGTTT+AGG | - | chr8.4:50775305-50775324 | None:intergenic | 45.0% | |
!! | CCTTTCCCAGATTTGTTGGA+AGG | - | chr8.4:50775368-50775387 | None:intergenic | 45.0% |
!! | CGGAAATGGGTTTTGCACAT+AGG | + | chr8.4:50775510-50775529 | MS.gene38904:CDS | 45.0% |
CATAGGTGATCTCTCTGGTG+TGG | - | chr8.4:50775049-50775068 | None:intergenic | 50.0% | |
CCGCGTGATTTCATGCAAAG+AGG | + | chr8.4:50773754-50773773 | MS.gene38904:CDS | 50.0% | |
GAAGCTGTACCACTCGGAAA+TGG | + | chr8.4:50775496-50775515 | MS.gene38904:CDS | 50.0% | |
GAGATGGTCCCTAAACACCA+TGG | + | chr8.4:50775293-50775312 | MS.gene38904:CDS | 50.0% | |
GCTGGACCTTCCAACAAATC+TGG | + | chr8.4:50775359-50775378 | MS.gene38904:CDS | 50.0% | |
GGAGACTGCATCAGCAACAA+CGG | + | chr8.4:50775331-50775350 | MS.gene38904:CDS | 50.0% | |
GTGCAAAACCCATTTCCGAG+TGG | - | chr8.4:50775508-50775527 | None:intergenic | 50.0% | |
TGATGCAGTCTCCTGCTTCT+TGG | - | chr8.4:50775324-50775343 | None:intergenic | 50.0% | |
TGGTCCCTAAACACCATGGA+AGG | + | chr8.4:50775297-50775316 | MS.gene38904:CDS | 50.0% | |
!! | CCATGTTCTAGAGCACGCAA+TGG | + | chr8.4:50773906-50773925 | MS.gene38904:intron | 50.0% |
!! | CCATTGCGTGCTCTAGAACA+TGG | - | chr8.4:50773909-50773928 | None:intergenic | 50.0% |
CCATGGAAGGACCAAGAAGC+AGG | + | chr8.4:50775310-50775329 | MS.gene38904:CDS | 55.0% | |
CCTGCTTCTTGGTCCTTCCA+TGG | - | chr8.4:50775313-50775332 | None:intergenic | 55.0% | |
TCAGCAACAACGGCATCTGC+TGG | + | chr8.4:50775341-50775360 | MS.gene38904:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 50773454 | 50775538 | 50773454 | ID=MS.gene38904 |
chr8.4 | mRNA | 50773454 | 50775538 | 50773454 | ID=MS.gene38904.t1;Parent=MS.gene38904 |
chr8.4 | exon | 50773454 | 50773630 | 50773454 | ID=MS.gene38904.t1.exon1;Parent=MS.gene38904.t1 |
chr8.4 | CDS | 50773454 | 50773630 | 50773454 | ID=cds.MS.gene38904.t1;Parent=MS.gene38904.t1 |
chr8.4 | exon | 50773739 | 50773838 | 50773739 | ID=MS.gene38904.t1.exon2;Parent=MS.gene38904.t1 |
chr8.4 | CDS | 50773739 | 50773838 | 50773739 | ID=cds.MS.gene38904.t1;Parent=MS.gene38904.t1 |
chr8.4 | exon | 50775267 | 50775538 | 50775267 | ID=MS.gene38904.t1.exon3;Parent=MS.gene38904.t1 |
chr8.4 | CDS | 50775267 | 50775538 | 50775267 | ID=cds.MS.gene38904.t1;Parent=MS.gene38904.t1 |
Gene Sequence |
Protein sequence |