Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38974.t1 | XP_013445167.1 | 95.3 | 322 | 14 | 1 | 1 | 321 | 1 | 322 | 5.80E-155 | 557 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38974.t1 | P55197 | 36.2 | 188 | 104 | 4 | 129 | 307 | 25 | 205 | 1.6e-33 | 144.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38974.t1 | G7ZV42 | 95.3 | 322 | 14 | 1 | 1 | 321 | 1 | 322 | 4.1e-155 | 557.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene38974.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene38974 | 0.847175 | 1.37E-59 | -1.69E-46 |
| MS.gene050297 | MS.gene38974 | 0.817515 | 3.17E-52 | -1.69E-46 |
| MS.gene051629 | MS.gene38974 | 0.807761 | 4.32E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene38974 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene38974 | 0.818372 | 2.03E-52 | -1.69E-46 |
| MS.gene053416 | MS.gene38974 | 0.818425 | 1.97E-52 | -1.69E-46 |
| MS.gene053417 | MS.gene38974 | 0.816302 | 5.93E-52 | -1.69E-46 |
| MS.gene055957 | MS.gene38974 | 0.82731 | 1.68E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene38974 | 0.81904 | 1.43E-52 | -1.69E-46 |
| MS.gene056042 | MS.gene38974 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene38974 | 0.815754 | 7.86E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene38974 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene38974 | 0.822094 | 2.85E-53 | -1.69E-46 |
| MS.gene060565 | MS.gene38974 | 0.805038 | 1.62E-49 | -1.69E-46 |
| MS.gene061099 | MS.gene38974 | 0.81554 | 8.77E-52 | -1.69E-46 |
| MS.gene061260 | MS.gene38974 | 0.813483 | 2.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38974.t1 | MTR_8g042510 | 94.720 | 322 | 16 | 1 | 1 | 321 | 1 | 322 | 0.0 | 587 |
| MS.gene38974.t1 | MTR_7g021365 | 31.351 | 185 | 107 | 4 | 129 | 301 | 605 | 781 | 8.04e-22 | 96.7 |
| MS.gene38974.t1 | MTR_7g021365 | 34.225 | 187 | 99 | 5 | 129 | 301 | 605 | 781 | 1.06e-21 | 96.3 |
| MS.gene38974.t1 | MTR_7g117355 | 27.586 | 232 | 142 | 9 | 81 | 299 | 483 | 701 | 8.11e-16 | 78.6 |
| MS.gene38974.t1 | MTR_8g027725 | 28.409 | 176 | 111 | 7 | 129 | 299 | 521 | 686 | 7.18e-15 | 75.9 |
| MS.gene38974.t1 | MTR_8g027725 | 28.409 | 176 | 111 | 7 | 129 | 299 | 506 | 671 | 7.84e-15 | 75.9 |
| MS.gene38974.t1 | MTR_3g091310 | 30.114 | 176 | 108 | 7 | 129 | 299 | 632 | 797 | 5.71e-14 | 73.2 |
| MS.gene38974.t1 | MTR_3g091310 | 30.114 | 176 | 108 | 7 | 129 | 299 | 538 | 703 | 6.27e-14 | 73.2 |
| MS.gene38974.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 602 | 767 | 1.74e-13 | 71.6 |
| MS.gene38974.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 324 | 489 | 2.06e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38974.t1 | AT3G14740 | 48.000 | 325 | 134 | 6 | 21 | 319 | 25 | 340 | 2.16e-97 | 291 |
| MS.gene38974.t1 | AT3G14740 | 48.000 | 325 | 132 | 7 | 21 | 319 | 25 | 338 | 1.37e-95 | 286 |
| MS.gene38974.t1 | AT2G31650 | 37.017 | 181 | 100 | 6 | 129 | 301 | 612 | 786 | 1.57e-27 | 113 |
| MS.gene38974.t1 | AT1G05830 | 34.555 | 191 | 96 | 6 | 129 | 301 | 629 | 808 | 1.78e-26 | 110 |
| MS.gene38974.t1 | AT1G05830 | 34.555 | 191 | 96 | 6 | 129 | 301 | 629 | 808 | 1.78e-26 | 110 |
| MS.gene38974.t1 | AT1G05830 | 34.555 | 191 | 96 | 6 | 129 | 301 | 629 | 808 | 1.78e-26 | 110 |
| MS.gene38974.t1 | AT1G05830 | 34.555 | 191 | 96 | 6 | 129 | 301 | 629 | 808 | 1.78e-26 | 110 |
| MS.gene38974.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 129 | 281 | 549 | 693 | 6.45e-15 | 76.3 |
| MS.gene38974.t1 | AT3G61740 | 32.258 | 155 | 93 | 6 | 129 | 281 | 549 | 693 | 7.13e-15 | 75.9 |
| MS.gene38974.t1 | AT5G53430 | 27.111 | 225 | 137 | 10 | 90 | 299 | 563 | 775 | 4.94e-13 | 70.5 |
| MS.gene38974.t1 | AT4G27910 | 30.899 | 178 | 104 | 10 | 129 | 299 | 595 | 760 | 1.11e-12 | 69.3 |
Find 78 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTTTGTATTGAGTATA+AGG | 0.260989 | 8.4:+49138034 | MS.gene38974:CDS |
| CTGCGACGGTTGTAATTTAA+TGG | 0.293708 | 8.4:+49137641 | MS.gene38974:CDS |
| CGTCGGTTGGGATGTTGTTT+TGG | 0.298059 | 8.4:-49137449 | None:intergenic |
| TCAATCCCTTCTCTCCCTTC+TGG | 0.311163 | 8.4:-49137882 | None:intergenic |
| AAAGGAGCTACTGTTGTTGC+TGG | 0.355346 | 8.4:+49138065 | MS.gene38974:CDS |
| GGTGGTGAAGGTGGGGTTGA+AGG | 0.356961 | 8.4:-49137428 | None:intergenic |
| TTCTGAACAGAAGTGTGGTT+TGG | 0.363928 | 8.4:+49137983 | MS.gene38974:CDS |
| AATGAATCTTAGTCGTTTGT+TGG | 0.373084 | 8.4:-49137241 | None:intergenic |
| TCTGAACAGAAGTGTGGTTT+GGG | 0.382510 | 8.4:+49137984 | MS.gene38974:CDS |
| GTAAAACCCACTCTCAGATC+TGG | 0.421289 | 8.4:+49138093 | MS.gene38974:CDS |
| ATGAATCTTAGTCGTTTGTT+GGG | 0.423800 | 8.4:-49137240 | None:intergenic |
| CGCAACGATCTTGTATTTCC+CGG | 0.424868 | 8.4:-49138663 | None:intergenic |
| ATGGTCCATGCTTCCTGCTA+TGG | 0.425868 | 8.4:+49137660 | MS.gene38974:CDS |
| GGACAGAGGGAGCAACGAAT+TGG | 0.436530 | 8.4:-49137768 | None:intergenic |
| GTGAAGGTGGGGTTGAAGGG+CGG | 0.439165 | 8.4:-49137424 | None:intergenic |
| GGGGTGTTGATGATGAAGGT+GGG | 0.444598 | 8.4:-49137362 | None:intergenic |
| AAGGATTGTATTCGACGTTA+AGG | 0.446169 | 8.4:-49137488 | None:intergenic |
| TTTCGATTGGGGTGGGTGAG+GGG | 0.446288 | 8.4:-49137515 | None:intergenic |
| AACAAACAACAGATGGAAAG+TGG | 0.447815 | 8.4:+49137811 | MS.gene38974:CDS |
| GTGGTGAAGGTGGGGTTGAA+GGG | 0.451273 | 8.4:-49137427 | None:intergenic |
| TTGGTGCAGAACAAGGGATC+CGG | 0.451306 | 8.4:+49138644 | MS.gene38974:intron |
| TCACAAAACCAGTCACCCTC+TGG | 0.452678 | 8.4:-49137705 | None:intergenic |
| TATGTATGTGGGTGTTGTGA+TGG | 0.455586 | 8.4:+49137945 | MS.gene38974:CDS |
| CACCAGAGGGTTACCATAGC+AGG | 0.457643 | 8.4:-49137673 | None:intergenic |
| GAGTATAAGGAAGGGAAGAA+AGG | 0.462357 | 8.4:+49138047 | MS.gene38974:CDS |
| GTGGGTAGAGAATAAGTAGA+TGG | 0.471895 | 8.4:-49137387 | None:intergenic |
| GTGTTGTGATGGATGTGCTT+TGG | 0.478647 | 8.4:+49137956 | MS.gene38974:CDS |
| CTTTGTATTGAGTATAAGGA+AGG | 0.487792 | 8.4:+49138038 | MS.gene38974:CDS |
| AACAGATCCCAGAGGGTGAC+TGG | 0.488130 | 8.4:+49137697 | MS.gene38974:CDS |
| GGGGTGGGTGAGGGGAGAGA+AGG | 0.500025 | 8.4:-49137507 | None:intergenic |
| CAGCGTTAGCATCTGTGCTA+TGG | 0.507494 | 8.4:-49137602 | None:intergenic |
| GAATTTGAAGTCGATGATGA+TGG | 0.507881 | 8.4:+49137561 | MS.gene38974:CDS |
| TGAGTGGAACAGCGTCGGTT+GGG | 0.509178 | 8.4:-49137461 | None:intergenic |
| CTGGGATCTGTTTCACCAGA+GGG | 0.510639 | 8.4:-49137686 | None:intergenic |
| CTCCCTCTGTCCTACGAAAG+AGG | 0.511997 | 8.4:+49137779 | MS.gene38974:CDS |
| CAAGTAAAGCACAAACAAGA+TGG | 0.512592 | 8.4:-49137836 | None:intergenic |
| CCACTCTCAGATCTGGGAAA+AGG | 0.515813 | 8.4:+49138100 | MS.gene38974:CDS |
| TTGGAGAAGTGTTATGTATG+TGG | 0.523141 | 8.4:+49137933 | MS.gene38974:CDS |
| TGGATCCAGAAGGGAGAGAA+GGG | 0.535229 | 8.4:+49137877 | MS.gene38974:CDS |
| TCGTTTGTTGGGAGGTAGGT+CGG | 0.538544 | 8.4:-49137229 | None:intergenic |
| ATGAGTGGAACAGCGTCGGT+TGG | 0.539722 | 8.4:-49137462 | None:intergenic |
| TAAAACCCACTCTCAGATCT+GGG | 0.541497 | 8.4:+49138094 | MS.gene38974:CDS |
| TTAGTCGTTTGTTGGGAGGT+AGG | 0.543612 | 8.4:-49137233 | None:intergenic |
| TGGAGAAGTGTTATGTATGT+GGG | 0.545181 | 8.4:+49137934 | MS.gene38974:CDS |
| TGGTGCAGAACAAGGGATCC+GGG | 0.545804 | 8.4:+49138645 | MS.gene38974:intron |
| CAACCGTCGCAGAAAACGAT+TGG | 0.547295 | 8.4:-49137630 | None:intergenic |
| CATTTATCAACAACAACAGC+AGG | 0.548781 | 8.4:+49137260 | MS.gene38974:CDS |
| TTCCTGCTATGGTAACCCTC+TGG | 0.549750 | 8.4:+49137671 | MS.gene38974:CDS |
| GCAATGAAACAAACAACAGA+TGG | 0.550342 | 8.4:+49137804 | MS.gene38974:CDS |
| TCCCTCTTTCGTAGGACAGA+GGG | 0.550747 | 8.4:-49137781 | None:intergenic |
| TTCATTGCTCCCTCTTTCGT+AGG | 0.551522 | 8.4:-49137789 | None:intergenic |
| GTGGATCCAGAAGGGAGAGA+AGG | 0.554299 | 8.4:+49137876 | MS.gene38974:CDS |
| TCCCTCTGTCCTACGAAAGA+GGG | 0.571477 | 8.4:+49137780 | MS.gene38974:CDS |
| GTTCTAAGATTCCACAGAAG+AGG | 0.573200 | 8.4:+49137907 | MS.gene38974:CDS |
| TTCTCCAACCACCTCTTCTG+TGG | 0.573745 | 8.4:-49137918 | None:intergenic |
| GATTCCACAGAAGAGGTGGT+TGG | 0.573938 | 8.4:+49137914 | MS.gene38974:CDS |
| CACAAAACCAGTCACCCTCT+GGG | 0.576262 | 8.4:-49137704 | None:intergenic |
| AATCTTAGTCGTTTGTTGGG+AGG | 0.581292 | 8.4:-49137237 | None:intergenic |
| GTAGAGAATAAGTAGATGGT+GGG | 0.581521 | 8.4:-49137383 | None:intergenic |
| CTAAGATTCCACAGAAGAGG+TGG | 0.584859 | 8.4:+49137910 | MS.gene38974:CDS |
| GGTAGAGAATAAGTAGATGG+TGG | 0.587962 | 8.4:-49137384 | None:intergenic |
| GGTTACCATAGCAGGAAGCA+TGG | 0.589460 | 8.4:-49137665 | None:intergenic |
| GGGTGTTGATGATGAAGGTG+GGG | 0.592237 | 8.4:-49137361 | None:intergenic |
| GTTTGTTCTGAACAGAAGTG+TGG | 0.601379 | 8.4:+49137978 | MS.gene38974:CDS |
| AAGTAAAGCACAAACAAGAT+GGG | 0.608555 | 8.4:-49137835 | None:intergenic |
| GTCGATGAGTGGAACAGCGT+CGG | 0.610138 | 8.4:-49137466 | None:intergenic |
| CTCCCTCTTTCGTAGGACAG+AGG | 0.612913 | 8.4:-49137782 | None:intergenic |
| TCTGGGATCTGTTTCACCAG+AGG | 0.613157 | 8.4:-49137687 | None:intergenic |
| TCGACGTTAAGGTCGATGAG+TGG | 0.616739 | 8.4:-49137477 | None:intergenic |
| ACAAACAACAGATGGAAAGT+GGG | 0.626115 | 8.4:+49137812 | MS.gene38974:CDS |
| AGAGAATAAGTAGATGGTGG+GGG | 0.628297 | 8.4:-49137381 | None:intergenic |
| TTTGTATTGAGTATAAGGAA+GGG | 0.629492 | 8.4:+49138039 | MS.gene38974:CDS |
| TAGAGAATAAGTAGATGGTG+GGG | 0.637260 | 8.4:-49137382 | None:intergenic |
| CTGGTGAAACAGATCCCAGA+GGG | 0.654987 | 8.4:+49137690 | MS.gene38974:CDS |
| TATTACATGTGGAATCAAAG+AGG | 0.666947 | 8.4:+49138013 | MS.gene38974:CDS |
| TAGCACAGATGCTAACGCTG+AGG | 0.709176 | 8.4:+49137605 | MS.gene38974:CDS |
| CGGGAAATACAAGATCGTTG+CGG | 0.728498 | 8.4:+49138664 | MS.gene38974:CDS |
| TCTGGTGAAACAGATCCCAG+AGG | 0.763846 | 8.4:+49137689 | MS.gene38974:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTACTTGATATAATT+TGG | + | chr8.4:49138377-49138396 | MS.gene38974:intron | 10.0% |
| !!! | TCTTAAGAATATTTATTTTT+TGG | + | chr8.4:49138207-49138226 | MS.gene38974:intron | 10.0% |
| !! | TATTGTTAGTGAATTATTGA+AGG | + | chr8.4:49138565-49138584 | MS.gene38974:intron | 20.0% |
| !!! | CAAGTTTAATTTGATTTTGT+TGG | + | chr8.4:49138625-49138644 | MS.gene38974:intron | 20.0% |
| !!! | CTAAATTTTATCTGGTTTTA+AGG | + | chr8.4:49138476-49138495 | MS.gene38974:intron | 20.0% |
| ! | TTTGTATTGAGTATAAGGAA+GGG | + | chr8.4:49138039-49138058 | MS.gene38974:CDS | 25.0% |
| !! | GTCAATGACTAAATTTTATC+TGG | + | chr8.4:49138468-49138487 | MS.gene38974:intron | 25.0% |
| !!! | TTATTGAAGGCTAACTTTTT+TGG | + | chr8.4:49138578-49138597 | MS.gene38974:intron | 25.0% |
| !!! | TTTGAGATTGTTTTTCGATT+GGG | - | chr8.4:49137530-49137549 | None:intergenic | 25.0% |
| !!! | TTTTGAGATTGTTTTTCGAT+TGG | - | chr8.4:49137531-49137550 | None:intergenic | 25.0% |
| AAGGTAACATTTGCTTTGAT+AGG | + | chr8.4:49138119-49138138 | MS.gene38974:intron | 30.0% | |
| AAGTAAAGCACAAACAAGAT+GGG | - | chr8.4:49137838-49137857 | None:intergenic | 30.0% | |
| AATGAATCTTAGTCGTTTGT+TGG | - | chr8.4:49137244-49137263 | None:intergenic | 30.0% | |
| ATGAATCTTAGTCGTTTGTT+GGG | - | chr8.4:49137243-49137262 | None:intergenic | 30.0% | |
| CGAAAAACAATCTCAAAAAC+AGG | + | chr8.4:49137533-49137552 | MS.gene38974:CDS | 30.0% | |
| CTTTGTATTGAGTATAAGGA+AGG | + | chr8.4:49138038-49138057 | MS.gene38974:CDS | 30.0% | |
| GGATCTTTGTATTGAGTATA+AGG | + | chr8.4:49138034-49138053 | MS.gene38974:CDS | 30.0% | |
| TATTACATGTGGAATCAAAG+AGG | + | chr8.4:49138013-49138032 | MS.gene38974:CDS | 30.0% | |
| ! | TTGGGTTTTCATATTACATG+TGG | + | chr8.4:49138002-49138021 | MS.gene38974:CDS | 30.0% |
| !! | TTGAGATTGTTTTTCGATTG+GGG | - | chr8.4:49137529-49137548 | None:intergenic | 30.0% |
| AACAAACAACAGATGGAAAG+TGG | + | chr8.4:49137811-49137830 | MS.gene38974:CDS | 35.0% | |
| AAGGATTGTATTCGACGTTA+AGG | - | chr8.4:49137491-49137510 | None:intergenic | 35.0% | |
| ACAAACAACAGATGGAAAGT+GGG | + | chr8.4:49137812-49137831 | MS.gene38974:CDS | 35.0% | |
| CAAGTAAAGCACAAACAAGA+TGG | - | chr8.4:49137839-49137858 | None:intergenic | 35.0% | |
| CATTTATCAACAACAACAGC+AGG | + | chr8.4:49137260-49137279 | MS.gene38974:CDS | 35.0% | |
| GCAATGAAACAAACAACAGA+TGG | + | chr8.4:49137804-49137823 | MS.gene38974:CDS | 35.0% | |
| GTAGAGAATAAGTAGATGGT+GGG | - | chr8.4:49137386-49137405 | None:intergenic | 35.0% | |
| TAGAGAATAAGTAGATGGTG+GGG | - | chr8.4:49137385-49137404 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGGTGCAGAACAA+GGG | + | chr8.4:49138638-49138657 | MS.gene38974:intron | 35.0% |
| ! | GAATTTGAAGTCGATGATGA+TGG | + | chr8.4:49137561-49137580 | MS.gene38974:CDS | 35.0% |
| !! | TGGAGAAGTGTTATGTATGT+GGG | + | chr8.4:49137934-49137953 | MS.gene38974:CDS | 35.0% |
| !! | TTGGAGAAGTGTTATGTATG+TGG | + | chr8.4:49137933-49137952 | MS.gene38974:CDS | 35.0% |
| !!! | AAGGGCGGTTATTCTTTTTT+TGG | - | chr8.4:49137412-49137431 | None:intergenic | 35.0% |
| !!! | ACGAGATTCTTTGCGTTTTT+TGG | - | chr8.4:49137322-49137341 | None:intergenic | 35.0% |
| !!! | AGATTCTTTGCGTTTTTTGG+TGG | - | chr8.4:49137319-49137338 | None:intergenic | 35.0% |
| !!! | GATTCTTTGCGTTTTTTGGT+GGG | - | chr8.4:49137318-49137337 | None:intergenic | 35.0% |
| !!! | GCGGTTATTCTTTTTTTGGT+GGG | - | chr8.4:49137408-49137427 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGTGGATCCAGAA+GGG | + | chr8.4:49137868-49137887 | MS.gene38974:CDS | 35.0% |
| CTGCGACGGTTGTAATTTAA+TGG | + | chr8.4:49137641-49137660 | MS.gene38974:CDS | 40.0% | |
| GAGTATAAGGAAGGGAAGAA+AGG | + | chr8.4:49138047-49138066 | MS.gene38974:CDS | 40.0% | |
| GGATCCACAAAAAACACTTC+AGG | - | chr8.4:49137864-49137883 | None:intergenic | 40.0% | |
| GGTAGAGAATAAGTAGATGG+TGG | - | chr8.4:49137387-49137406 | None:intergenic | 40.0% | |
| GTGGGTAGAGAATAAGTAGA+TGG | - | chr8.4:49137390-49137409 | None:intergenic | 40.0% | |
| TAAAACCCACTCTCAGATCT+GGG | + | chr8.4:49138094-49138113 | MS.gene38974:CDS | 40.0% | |
| ! | AATCTTAGTCGTTTGTTGGG+AGG | - | chr8.4:49137240-49137259 | None:intergenic | 40.0% |
| ! | AGAGAATAAGTAGATGGTGG+GGG | - | chr8.4:49137384-49137403 | None:intergenic | 40.0% |
| ! | GATTTTGTTGGTGCAGAACA+AGG | + | chr8.4:49138637-49138656 | MS.gene38974:intron | 40.0% |
| ! | GTTTGTTCTGAACAGAAGTG+TGG | + | chr8.4:49137978-49137997 | MS.gene38974:CDS | 40.0% |
| ! | TATGTATGTGGGTGTTGTGA+TGG | + | chr8.4:49137945-49137964 | MS.gene38974:CDS | 40.0% |
| ! | TCTGAACAGAAGTGTGGTTT+GGG | + | chr8.4:49137984-49138003 | MS.gene38974:CDS | 40.0% |
| ! | TTCTGAACAGAAGTGTGGTT+TGG | + | chr8.4:49137983-49138002 | MS.gene38974:CDS | 40.0% |
| !! | AGATTGTTTTTCGATTGGGG+TGG | - | chr8.4:49137526-49137545 | None:intergenic | 40.0% |
| !! | GATTGTTTTTCGATTGGGGT+GGG | - | chr8.4:49137525-49137544 | None:intergenic | 40.0% |
| !! | GTTCTAAGATTCCACAGAAG+AGG | + | chr8.4:49137907-49137926 | MS.gene38974:CDS | 40.0% |
| !!! | GAAGGCTAACTTTTTTGGCT+TGG | + | chr8.4:49138583-49138602 | MS.gene38974:intron | 40.0% |
| !!! | GGCGGTTATTCTTTTTTTGG+TGG | - | chr8.4:49137409-49137428 | None:intergenic | 40.0% |
| !!! | GTGTTTTTTGTGGATCCAGA+AGG | + | chr8.4:49137867-49137886 | MS.gene38974:CDS | 40.0% |
| !!! | TGTGCCTGAAGTGTTTTTTG+TGG | + | chr8.4:49137857-49137876 | MS.gene38974:CDS | 40.0% |
| AAAGGAGCTACTGTTGTTGC+TGG | + | chr8.4:49138065-49138084 | MS.gene38974:CDS | 45.0% | |
| CGCAACGATCTTGTATTTCC+CGG | - | chr8.4:49138666-49138685 | None:intergenic | 45.0% | |
| CGGGAAATACAAGATCGTTG+CGG | + | chr8.4:49138664-49138683 | MS.gene38974:CDS | 45.0% | |
| CTAAGATTCCACAGAAGAGG+TGG | + | chr8.4:49137910-49137929 | MS.gene38974:CDS | 45.0% | |
| GTAAAACCCACTCTCAGATC+TGG | + | chr8.4:49138093-49138112 | MS.gene38974:CDS | 45.0% | |
| TTCATTGCTCCCTCTTTCGT+AGG | - | chr8.4:49137792-49137811 | None:intergenic | 45.0% | |
| ! | AGGTAGGTCGGTGATGTTTT+TGG | - | chr8.4:49137220-49137239 | None:intergenic | 45.0% |
| ! | CTTTTCCCAGATCTGAGAGT+GGG | - | chr8.4:49138102-49138121 | None:intergenic | 45.0% |
| ! | GATCCAATCGTTTTCTGCGA+CGG | + | chr8.4:49137627-49137646 | MS.gene38974:CDS | 45.0% |
| ! | TTAGTCGTTTGTTGGGAGGT+AGG | - | chr8.4:49137236-49137255 | None:intergenic | 45.0% |
| !! | GTGTTGTGATGGATGTGCTT+TGG | + | chr8.4:49137956-49137975 | MS.gene38974:CDS | 45.0% |
| !!! | GGATGTTGTTTTGGTGGTGA+AGG | - | chr8.4:49137443-49137462 | None:intergenic | 45.0% |
| !!! | GTTGTTTTGGTGGTGAAGGT+GGG | - | chr8.4:49137439-49137458 | None:intergenic | 45.0% |
| !!! | TGTTGTTTTGGTGGTGAAGG+TGG | - | chr8.4:49137440-49137459 | None:intergenic | 45.0% |
| !!! | TTGTTTTGGTGGTGAAGGTG+GGG | - | chr8.4:49137438-49137457 | None:intergenic | 45.0% |
| ATGGTCCATGCTTCCTGCTA+TGG | + | chr8.4:49137660-49137679 | MS.gene38974:CDS | 50.0% | |
| CAACCGTCGCAGAAAACGAT+TGG | - | chr8.4:49137633-49137652 | None:intergenic | 50.0% | |
| CACAAAACCAGTCACCCTCT+GGG | - | chr8.4:49137707-49137726 | None:intergenic | 50.0% | |
| CAGCGTTAGCATCTGTGCTA+TGG | - | chr8.4:49137605-49137624 | None:intergenic | 50.0% | |
| CCACTCTCAGATCTGGGAAA+AGG | + | chr8.4:49138100-49138119 | MS.gene38974:CDS | 50.0% | |
| CTGGGATCTGTTTCACCAGA+GGG | - | chr8.4:49137689-49137708 | None:intergenic | 50.0% | |
| CTGGTGAAACAGATCCCAGA+GGG | + | chr8.4:49137690-49137709 | MS.gene38974:CDS | 50.0% | |
| GATTCCACAGAAGAGGTGGT+TGG | + | chr8.4:49137914-49137933 | MS.gene38974:CDS | 50.0% | |
| GGTTACCATAGCAGGAAGCA+TGG | - | chr8.4:49137668-49137687 | None:intergenic | 50.0% | |
| TAGCACAGATGCTAACGCTG+AGG | + | chr8.4:49137605-49137624 | MS.gene38974:CDS | 50.0% | |
| TCAATCCCTTCTCTCCCTTC+TGG | - | chr8.4:49137885-49137904 | None:intergenic | 50.0% | |
| TCACAAAACCAGTCACCCTC+TGG | - | chr8.4:49137708-49137727 | None:intergenic | 50.0% | |
| TCCCTCTGTCCTACGAAAGA+GGG | + | chr8.4:49137780-49137799 | MS.gene38974:CDS | 50.0% | |
| TCCCTCTTTCGTAGGACAGA+GGG | - | chr8.4:49137784-49137803 | None:intergenic | 50.0% | |
| TCGACGTTAAGGTCGATGAG+TGG | - | chr8.4:49137480-49137499 | None:intergenic | 50.0% | |
| TCTGGTGAAACAGATCCCAG+AGG | + | chr8.4:49137689-49137708 | MS.gene38974:CDS | 50.0% | |
| TGGATCCAGAAGGGAGAGAA+GGG | + | chr8.4:49137877-49137896 | MS.gene38974:CDS | 50.0% | |
| TTCCTGCTATGGTAACCCTC+TGG | + | chr8.4:49137671-49137690 | MS.gene38974:CDS | 50.0% | |
| TTCTCCAACCACCTCTTCTG+TGG | - | chr8.4:49137921-49137940 | None:intergenic | 50.0% | |
| TTGGTGCAGAACAAGGGATC+CGG | + | chr8.4:49138644-49138663 | MS.gene38974:intron | 50.0% | |
| ! | CCTTTTCCCAGATCTGAGAG+TGG | - | chr8.4:49138103-49138122 | None:intergenic | 50.0% |
| ! | TCGTTTGTTGGGAGGTAGGT+CGG | - | chr8.4:49137232-49137251 | None:intergenic | 50.0% |
| ! | TCTGGGATCTGTTTCACCAG+AGG | - | chr8.4:49137690-49137709 | None:intergenic | 50.0% |
| ! | TTTTCGATTGGGGTGGGTGA+GGG | - | chr8.4:49137519-49137538 | None:intergenic | 50.0% |
| !! | CGTCGGTTGGGATGTTGTTT+TGG | - | chr8.4:49137452-49137471 | None:intergenic | 50.0% |
| !! | GGGGTGTTGATGATGAAGGT+GGG | - | chr8.4:49137365-49137384 | None:intergenic | 50.0% |
| !! | GGGTGTTGATGATGAAGGTG+GGG | - | chr8.4:49137364-49137383 | None:intergenic | 50.0% |
| !! | TTTTTCGATTGGGGTGGGTG+AGG | - | chr8.4:49137520-49137539 | None:intergenic | 50.0% |
| !!! | CGGTTGGGATGTTGTTTTGG+TGG | - | chr8.4:49137449-49137468 | None:intergenic | 50.0% |
| AACAGATCCCAGAGGGTGAC+TGG | + | chr8.4:49137697-49137716 | MS.gene38974:CDS | 55.0% | |
| CACCAGAGGGTTACCATAGC+AGG | - | chr8.4:49137676-49137695 | None:intergenic | 55.0% | |
| CTCCCTCTGTCCTACGAAAG+AGG | + | chr8.4:49137779-49137798 | MS.gene38974:CDS | 55.0% | |
| CTCCCTCTTTCGTAGGACAG+AGG | - | chr8.4:49137785-49137804 | None:intergenic | 55.0% | |
| GGACAGAGGGAGCAACGAAT+TGG | - | chr8.4:49137771-49137790 | None:intergenic | 55.0% | |
| GTCGATGAGTGGAACAGCGT+CGG | - | chr8.4:49137469-49137488 | None:intergenic | 55.0% | |
| GTGGATCCAGAAGGGAGAGA+AGG | + | chr8.4:49137876-49137895 | MS.gene38974:CDS | 55.0% | |
| GTGGTGAAGGTGGGGTTGAA+GGG | - | chr8.4:49137430-49137449 | None:intergenic | 55.0% | |
| TGGTGCAGAACAAGGGATCC+GGG | + | chr8.4:49138645-49138664 | MS.gene38974:intron | 55.0% | |
| TTTCGATTGGGGTGGGTGAG+GGG | - | chr8.4:49137518-49137537 | None:intergenic | 55.0% | |
| !! | ATGAGTGGAACAGCGTCGGT+TGG | - | chr8.4:49137465-49137484 | None:intergenic | 55.0% |
| !! | GGGGGTGTTGATGATGAAGG+TGG | - | chr8.4:49137366-49137385 | None:intergenic | 55.0% |
| !! | GGTGGGGGTGTTGATGATGA+AGG | - | chr8.4:49137369-49137388 | None:intergenic | 55.0% |
| !! | TGAGTGGAACAGCGTCGGTT+GGG | - | chr8.4:49137464-49137483 | None:intergenic | 55.0% |
| GGTGGTGAAGGTGGGGTTGA+AGG | - | chr8.4:49137431-49137450 | None:intergenic | 60.0% | |
| GTGAAGGTGGGGTTGAAGGG+CGG | - | chr8.4:49137427-49137446 | None:intergenic | 60.0% | |
| GGGGTGGGTGAGGGGAGAGA+AGG | - | chr8.4:49137510-49137529 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 49137207 | 49138703 | 49137207 | ID=MS.gene38974 |
| chr8.4 | mRNA | 49137207 | 49138703 | 49137207 | ID=MS.gene38974.t1;Parent=MS.gene38974 |
| chr8.4 | exon | 49137207 | 49138121 | 49137207 | ID=MS.gene38974.t1.exon1;Parent=MS.gene38974.t1 |
| chr8.4 | CDS | 49137207 | 49138121 | 49137207 | ID=cds.MS.gene38974.t1;Parent=MS.gene38974.t1 |
| chr8.4 | exon | 49138653 | 49138703 | 49138653 | ID=MS.gene38974.t1.exon2;Parent=MS.gene38974.t1 |
| chr8.4 | CDS | 49138653 | 49138703 | 49138653 | ID=cds.MS.gene38974.t1;Parent=MS.gene38974.t1 |
| Gene Sequence |
| Protein sequence |
