AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39320.t1 MTR_8g009880 96.175 366 14 0 1 366 36 401 0.0 731
MS.gene39320.t1 MTR_5g097620 85.095 369 51 3 1 365 73 441 0.0 640
MS.gene39320.t1 MTR_4g133620 34.309 376 213 9 2 362 41 397 4.00e-63 207
MS.gene39320.t1 MTR_2g026080 36.043 369 210 10 2 360 45 397 5.41e-63 206
MS.gene39320.t1 MTR_7g051910 32.527 372 226 6 1 365 40 393 2.25e-61 202
MS.gene39320.t1 MTR_5g093520 35.244 349 200 9 3 339 54 388 1.95e-58 195
MS.gene39320.t1 MTR_3g058510 30.595 353 220 8 2 345 42 378 1.58e-51 176
MS.gene39320.t1 MTR_8g028075 31.858 226 144 7 113 336 336 553 1.15e-30 122
MS.gene39320.t1 MTR_7g117375 31.399 293 166 13 34 317 92 358 6.14e-21 93.6
MS.gene39320.t1 MTR_2g018960 29.814 161 103 3 153 307 651 807 9.30e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39320.t1 AT2G04850 69.648 369 107 4 1 366 38 404 0.0 518
MS.gene39320.t1 AT4G12980 34.444 360 212 5 1 349 44 390 7.12e-70 224
MS.gene39320.t1 AT3G25290 33.983 359 215 5 1 349 43 389 4.15e-69 222
MS.gene39320.t1 AT3G25290 33.983 359 215 5 1 349 43 389 4.15e-69 222
MS.gene39320.t1 AT5G47530 33.803 355 213 8 2 350 43 381 7.15e-66 214
MS.gene39320.t1 AT5G35735 33.705 359 212 10 12 365 55 392 2.14e-61 202
MS.gene39320.t1 AT4G17280 35.097 359 209 9 2 352 50 392 1.27e-60 200
MS.gene39320.t1 AT3G59070 30.532 357 214 12 21 361 72 410 1.28e-45 162
MS.gene39320.t1 AT3G07570 27.966 354 209 12 2 337 42 367 1.08e-29 117
MS.gene39320.t1 AT5G48750 29.954 217 134 4 1 213 49 251 1.02e-27 109
MS.gene39320.t1 AT3G61750 28.053 303 196 10 33 333 11 293 2.03e-26 107
MS.gene39320.t1 AT3G61750 27.103 321 212 10 15 333 70 370 5.90e-26 107
MS.gene39320.t1 AT5G54830 29.412 187 111 6 160 340 670 841 7.12e-14 73.6

Find 131 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGTTTGCTTTCATTCT+TGG 0.155320 8.2:-81195350 MS.gene39320:CDS
ATTCCAAACAAGGTGGATTT+TGG 0.189165 8.2:+81195631 None:intergenic
GTTTGATTCTAGTTTGAATT+TGG 0.197666 8.2:+81195658 None:intergenic
GGTACTTTCATTTCACCTTC+TGG 0.249020 8.2:-81195926 MS.gene39320:CDS
AGACTTTAGCATTGTTGTTT+AGG 0.279742 8.2:-81195220 MS.gene39320:CDS
ACCTTAGAGCTAGTCTTCTT+TGG 0.283155 8.2:-81195947 MS.gene39320:CDS
AAACCAAAATCCACCTTGTT+TGG 0.304424 8.2:-81195634 MS.gene39320:CDS
GATTGGTGTTTCCATAGCTT+TGG 0.318729 8.2:-81195033 MS.gene39320:CDS
CACCTTCTGGATGGGTTGGA+TGG 0.322109 8.2:-81195913 MS.gene39320:CDS
CGATAACTGCACGTTACTTT+AGG 0.338646 8.2:-81195421 MS.gene39320:CDS
GTTTGAATTTGGCATAGATT+TGG 0.341934 8.2:+81195669 None:intergenic
CTGAACTTGTTCCTAGCGTT+TGG 0.344648 8.2:+81195197 None:intergenic
TCCTGACATCTCCGATGAAA+TGG 0.350136 8.2:+81195880 None:intergenic
TTCGCCATTGGCATTCGCCT+TGG 0.354937 8.2:-81195317 MS.gene39320:CDS
TGCCAAGTTGAGTTACTGTT+TGG 0.356516 8.2:-81195069 MS.gene39320:CDS
GCTTTCATTCTTGGAACTGT+GGG 0.358819 8.2:-81195341 MS.gene39320:CDS
AATCCTACCACCACTTTGTT+GGG 0.359563 8.2:-81195163 MS.gene39320:CDS
ACCTTCTGGATGGGTTGGAT+GGG 0.360379 8.2:-81195912 MS.gene39320:CDS
TCTTCCATGGCGGCCATATA+TGG 0.369335 8.2:-81195728 MS.gene39320:CDS
GGCCATATATGGTGGCAAAA+AGG 0.375935 8.2:-81195717 MS.gene39320:CDS
TCGCCATTGGCATTCGCCTT+GGG 0.378753 8.2:-81195316 MS.gene39320:CDS
TTGGGACTTTCTACTCTGAT+TGG 0.385534 8.2:-81195050 MS.gene39320:CDS
CCTCTCTTCCATTGCCACCT+TGG 0.387175 8.2:-81195552 MS.gene39320:CDS
GATATTCTGTAGGAAATCTA+AGG 0.396344 8.2:-81194994 MS.gene39320:CDS
AAATCCTACCACCACTTTGT+TGG 0.398807 8.2:-81195164 MS.gene39320:CDS
GCCACCTTGGACGTGTTGTC+AGG 0.406139 8.2:-81195539 MS.gene39320:CDS
ACCAAAGAAGACTAGCTCTA+AGG 0.410370 8.2:+81195946 None:intergenic
GGGTACTCTTGTGTGGTGCT+CGG 0.419514 8.2:-81195143 MS.gene39320:CDS
TCCATGCTATAGAGGCTTGT+TGG 0.422158 8.2:+81195990 None:intergenic
TTTCAAGGGTTTGAAGTGAT+GGG 0.426534 8.2:-81195107 MS.gene39320:CDS
CTTTCATTTCACCTTCTGGA+TGG 0.427020 8.2:-81195922 MS.gene39320:CDS
GGTACTCTTGTGTGGTGCTC+GGG 0.429304 8.2:-81195142 MS.gene39320:CDS
AATCGAGGTCTTTATGTTCA+AGG 0.430164 8.2:-81195611 MS.gene39320:CDS
ATTTCACCTTCTGGATGGGT+TGG 0.432760 8.2:-81195917 MS.gene39320:CDS
GGGTTTGTGAATGTGTTTCA+AGG 0.433084 8.2:-81195122 MS.gene39320:CDS
CCTTCTGGATGGGTTGGATG+GGG 0.433473 8.2:-81195911 MS.gene39320:CDS
AGGACTACTTGGCCTGAACT+TGG 0.435228 8.2:+81195830 None:intergenic
GCCAAGTTGAGTTACTGTTT+GGG 0.436526 8.2:-81195068 MS.gene39320:CDS
CCATGCTATAGAGGCTTGTT+GGG 0.439886 8.2:+81195991 None:intergenic
TAGCTTTGGAGGTGAACTCT+TGG 0.445429 8.2:-81195019 MS.gene39320:CDS
CGCCTTGGGCAATTGTCTCC+AGG 0.448142 8.2:-81195302 MS.gene39320:CDS
GGAACTGTGGGGTTCGCCAT+TGG 0.448882 8.2:-81195329 MS.gene39320:CDS
CCTGACATCTCCGATGAAAT+GGG 0.449627 8.2:+81195881 None:intergenic
TTTCATTTCACCTTCTGGAT+GGG 0.456584 8.2:-81195921 MS.gene39320:CDS
GTTTCAAGGGTTTGAAGTGA+TGG 0.464273 8.2:-81195108 MS.gene39320:CDS
AGCTTTGGAGGTGAACTCTT+GGG 0.465949 8.2:-81195018 MS.gene39320:CDS
AGCTCTAAGGTGGAGTTATG+AGG 0.469977 8.2:+81195959 None:intergenic
CAAACGCTAGGAACAAGTTC+AGG 0.470832 8.2:-81195196 MS.gene39320:CDS
TATAGCCTCCACAGGAAGCT+TGG 0.472577 8.2:-81195272 MS.gene39320:CDS
TACTTTGAATGCCATCTCAT+GGG 0.476629 8.2:-81195465 MS.gene39320:CDS
GGAACAAGTTCAGGAAGTAT+TGG 0.480063 8.2:-81195187 MS.gene39320:CDS
CCCATTTCATCGGAGATGTC+AGG 0.481934 8.2:-81195881 MS.gene39320:CDS
GAGAGGTCAGTGGAGGTGGT+TGG 0.482995 8.2:+81195569 None:intergenic
CATTCACCTTATCTCTTCCA+TGG 0.483758 8.2:-81195741 MS.gene39320:CDS
GCTATAGAGGCTTGTTGGGT+GGG 0.484183 8.2:+81195995 None:intergenic
ACATTCGGGTCTATGATGTA+AGG 0.484186 8.2:+81195803 None:intergenic
GAATCACTCTCAGCATTGTA+AGG 0.485398 8.2:+81195492 None:intergenic
GGAAGAGAGGTCAGTGGAGG+TGG 0.485795 8.2:+81195565 None:intergenic
GAATTTGGCATAGATTTGGA+TGG 0.486860 8.2:+81195673 None:intergenic
TGCTTTCATTCTTGGAACTG+TGG 0.487236 8.2:-81195342 MS.gene39320:CDS
ATGAAGAGAGAAGGACTTGT+CGG 0.488902 8.2:-81194963 MS.gene39320:CDS
GCCTGAACTTGGGTCAGAAA+AGG 0.492569 8.2:+81195841 None:intergenic
TGTAAGGAAGTAGGACTACT+TGG 0.498128 8.2:+81195819 None:intergenic
TTCAAGGGTTTGAAGTGATG+GGG 0.499384 8.2:-81195106 MS.gene39320:CDS
TGGTGTTTCCATAGCTTTGG+AGG 0.501209 8.2:-81195030 MS.gene39320:CDS
CAACTTGGCATAGGATCTGC+TGG 0.504353 8.2:+81195082 None:intergenic
TGGAGGCTATACTCTACTCC+TGG 0.506212 8.2:+81195284 None:intergenic
GGTCTATGATGTAAGGAAGT+AGG 0.509135 8.2:+81195810 None:intergenic
AATTTGGCATAGATTTGGAT+GGG 0.513427 8.2:+81195674 None:intergenic
TGCTATAGAGGCTTGTTGGG+TGG 0.514341 8.2:+81195994 None:intergenic
GAAGAGAAAATGAAGAGAGA+AGG 0.521275 8.2:-81194972 MS.gene39320:CDS
ATCCACCTTGTTTGGAATCG+AGG 0.529028 8.2:-81195626 MS.gene39320:CDS
AGAGTTCACCTCCAAAGCTA+TGG 0.533936 8.2:+81195022 None:intergenic
CTAAAGTCTGCAAGGCTCCA+AGG 0.539524 8.2:+81195234 None:intergenic
GAGGTGGTTGGATGAATAGT+AGG 0.540410 8.2:+81195581 None:intergenic
GGTTTGTGAATGTGTTTCAA+GGG 0.541986 8.2:-81195121 MS.gene39320:CDS
TTGTCGGAACTTCTGACAAA+GGG 0.544921 8.2:-81194947 MS.gene39320:CDS
GTACTTTGAATGCCATCTCA+TGG 0.547445 8.2:-81195466 MS.gene39320:CDS
CAACACGTCCAAGGTGGCAA+TGG 0.551704 8.2:+81195544 None:intergenic
GTAGAAAGTCCATGCTATAG+AGG 0.558385 8.2:+81195982 None:intergenic
GAGTAGAGTATAGCCTCCAC+AGG 0.561022 8.2:-81195280 MS.gene39320:CDS
CTTTGTTGGGTACTCTTGTG+TGG 0.563285 8.2:-81195150 MS.gene39320:CDS
TCCCAAACAGTAACTCAACT+TGG 0.566330 8.2:+81195067 None:intergenic
CAAGGCTCCAAGGCAAAACA+CGG 0.566886 8.2:+81195244 None:intergenic
TTGCCCAAGGCGAATGCCAA+TGG 0.566998 8.2:+81195313 None:intergenic
GCGTGGTTCTATGCTCATGC+AGG 0.567093 8.2:-81195377 MS.gene39320:CDS
CAACAATGCTAAAGTCTGCA+AGG 0.567757 8.2:+81195226 None:intergenic
GGGAATCAACCCCATTTCAT+CGG 0.569185 8.2:-81195891 MS.gene39320:CDS
GCCACCATATATGGCCGCCA+TGG 0.570636 8.2:+81195724 None:intergenic
TTTAGGCATATTCAATCACT+AGG 0.571060 8.2:-81195404 MS.gene39320:CDS
CGATTCCAAGCTTCCTGTGG+AGG 0.572777 8.2:+81195267 None:intergenic
CTTTCATTCTTGGAACTGTG+GGG 0.574407 8.2:-81195340 MS.gene39320:CDS
GGACTACTTGGCCTGAACTT+GGG 0.575450 8.2:+81195831 None:intergenic
TGGCCGCCATGGAAGAGATA+AGG 0.578696 8.2:+81195735 None:intergenic
GCTCTAAGGTGGAGTTATGA+GGG 0.585753 8.2:+81195960 None:intergenic
TATGTATTCTCTTTCAAGTG+TGG 0.586082 8.2:+81194913 None:intergenic
TGTTGTTTAGGCCAAACGCT+AGG 0.586674 8.2:-81195208 MS.gene39320:CDS
ACAATGCTGAGAGTGATTCA+CGG 0.588148 8.2:-81195488 MS.gene39320:CDS
CCCAACAAGCCTCTATAGCA+TGG 0.588511 8.2:-81195991 MS.gene39320:CDS
ATTTGGCATAGATTTGGATG+GGG 0.589019 8.2:+81195675 None:intergenic
CAAAAGAATACCCCATGAGA+TGG 0.592702 8.2:+81195454 None:intergenic
AAAGACCTCGATTCCAAACA+AGG 0.598108 8.2:+81195621 None:intergenic
ACTCTTGGGTGATATTCTGT+AGG 0.598331 8.2:-81195004 MS.gene39320:CDS
TTTGGCATAGATTTGGATGG+GGG 0.598707 8.2:+81195676 None:intergenic
TCAAGGGTTTGAAGTGATGG+GGG 0.598986 8.2:-81195105 MS.gene39320:CDS
AAAGAAGACTAGCTCTAAGG+TGG 0.603475 8.2:+81195949 None:intergenic
ACAGTAACTCAACTTGGCAT+AGG 0.604048 8.2:+81195073 None:intergenic
TCAAGTGGTCGAGAGAGTAG+TGG 0.610217 8.2:+81195764 None:intergenic
CGGCGATTCCAAGCTTCCTG+TGG 0.614274 8.2:+81195264 None:intergenic
CCAAGGTGGCAATGGAAGAG+AGG 0.618055 8.2:+81195552 None:intergenic
TGAACCTGACAACACGTCCA+AGG 0.624862 8.2:+81195535 None:intergenic
CCCCATCCAACCCATCCAGA+AGG 0.626283 8.2:+81195911 None:intergenic
CTTGTCGGAACTTCTGACAA+AGG 0.629302 8.2:-81194948 MS.gene39320:CDS
GGCAATGGAAGAGAGGTCAG+TGG 0.631399 8.2:+81195559 None:intergenic
ACTTCTGACAAAGGGAGTAG+TGG 0.632759 8.2:-81194939 MS.gene39320:CDS
CGTGCAGTTATCGCTCCCAT+CGG 0.634360 8.2:+81195431 None:intergenic
CACAAGAGTACCCAACAAAG+TGG 0.636742 8.2:+81195153 None:intergenic
ACTTTGAATGCCATCTCATG+GGG 0.644712 8.2:-81195464 MS.gene39320:CDS
GTACCCAACAAAGTGGTGGT+AGG 0.645713 8.2:+81195160 None:intergenic
TCCATGGCGGCCATATATGG+TGG 0.646343 8.2:-81195725 MS.gene39320:CDS
CTCCTGGAGACAATTGCCCA+AGG 0.650171 8.2:+81195300 None:intergenic
CTGACATCTCCGATGAAATG+GGG 0.654133 8.2:+81195882 None:intergenic
GAGATAAGGTGAATGTCAAG+TGG 0.666609 8.2:+81195749 None:intergenic
TTCAATCACTAGGTCCTGCG+TGG 0.687681 8.2:-81195394 MS.gene39320:CDS
AATGGAAGAGAGGTCAGTGG+AGG 0.692402 8.2:+81195562 None:intergenic
AAGGTCTGTGTGTTGACGAG+CGG 0.701086 8.2:+81195511 None:intergenic
TCACCTTATCTCTTCCATGG+CGG 0.701620 8.2:-81195738 MS.gene39320:CDS
AAGAGTACCCAACAAAGTGG+TGG 0.705072 8.2:+81195156 None:intergenic
GCATGAGCATAGAACCACGC+AGG 0.706285 8.2:+81195380 None:intergenic
GACCTCGATTCCAAACAAGG+TGG 0.711086 8.2:+81195624 None:intergenic
ACCTGACAACACGTCCAAGG+TGG 0.719059 8.2:+81195538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTGATTCTAGTTTGAATT+TGG + chr8.2:81195275-81195294 None:intergenic 25.0%
AATTTGGCATAGATTTGGAT+GGG + chr8.2:81195259-81195278 None:intergenic 30.0%
CAATTGTTTGCTTTCATTCT+TGG - chr8.2:81195580-81195599 MS.gene39320:CDS 30.0%
GATATTCTGTAGGAAATCTA+AGG - chr8.2:81195936-81195955 MS.gene39320:CDS 30.0%
GTTTGAATTTGGCATAGATT+TGG + chr8.2:81195264-81195283 None:intergenic 30.0%
TTTAGGCATATTCAATCACT+AGG - chr8.2:81195526-81195545 MS.gene39320:CDS 30.0%
!! AGACTTTAGCATTGTTGTTT+AGG - chr8.2:81195710-81195729 MS.gene39320:CDS 30.0%
!!! ATTTTTGGAGCTTTACATTC+GGG + chr8.2:81195144-81195163 None:intergenic 30.0%
!!! GATTTTTGGAGCTTTACATT+CGG + chr8.2:81195145-81195164 None:intergenic 30.0%
AAACCAAAATCCACCTTGTT+TGG - chr8.2:81195296-81195315 MS.gene39320:CDS 35.0%
AATCGAGGTCTTTATGTTCA+AGG - chr8.2:81195319-81195338 MS.gene39320:CDS 35.0%
ATTTGGCATAGATTTGGATG+GGG + chr8.2:81195258-81195277 None:intergenic 35.0%
GAAGAGAAAATGAAGAGAGA+AGG - chr8.2:81195958-81195977 MS.gene39320:CDS 35.0%
GAATTTGGCATAGATTTGGA+TGG + chr8.2:81195260-81195279 None:intergenic 35.0%
GGTTTGTGAATGTGTTTCAA+GGG - chr8.2:81195809-81195828 MS.gene39320:CDS 35.0%
TACTTTGAATGCCATCTCAT+GGG - chr8.2:81195465-81195484 MS.gene39320:CDS 35.0%
TTTCATTTCACCTTCTGGAT+GGG - chr8.2:81195009-81195028 MS.gene39320:CDS 35.0%
! TTTCAAGGGTTTGAAGTGAT+GGG - chr8.2:81195823-81195842 MS.gene39320:CDS 35.0%
!! ATTCCAAACAAGGTGGATTT+TGG + chr8.2:81195302-81195321 None:intergenic 35.0%
AAAAAGGCCACCATACACAA+CGG - chr8.2:81195229-81195248 MS.gene39320:CDS 40.0%
AAAGACCTCGATTCCAAACA+AGG + chr8.2:81195312-81195331 None:intergenic 40.0%
AAATCCTACCACCACTTTGT+TGG - chr8.2:81195766-81195785 MS.gene39320:CDS 40.0%
AATCCTACCACCACTTTGTT+GGG - chr8.2:81195767-81195786 MS.gene39320:CDS 40.0%
ACAATGCTGAGAGTGATTCA+CGG - chr8.2:81195442-81195461 MS.gene39320:CDS 40.0%
ACAGTAACTCAACTTGGCAT+AGG + chr8.2:81195860-81195879 None:intergenic 40.0%
ACATTCGGGTCTATGATGTA+AGG + chr8.2:81195130-81195149 None:intergenic 40.0%
ACTCTTGGGTGATATTCTGT+AGG - chr8.2:81195926-81195945 MS.gene39320:CDS 40.0%
ACTTTGAATGCCATCTCATG+GGG - chr8.2:81195466-81195485 MS.gene39320:CDS 40.0%
ATGAAGAGAGAAGGACTTGT+CGG - chr8.2:81195967-81195986 MS.gene39320:CDS 40.0%
CAAAAGAATACCCCATGAGA+TGG + chr8.2:81195479-81195498 None:intergenic 40.0%
CAACAATGCTAAAGTCTGCA+AGG + chr8.2:81195707-81195726 None:intergenic 40.0%
CATTCACCTTATCTCTTCCA+TGG - chr8.2:81195189-81195208 MS.gene39320:CDS 40.0%
CTTTCATTCTTGGAACTGTG+GGG - chr8.2:81195590-81195609 MS.gene39320:CDS 40.0%
CTTTCATTTCACCTTCTGGA+TGG - chr8.2:81195008-81195027 MS.gene39320:CDS 40.0%
GAATCACTCTCAGCATTGTA+AGG + chr8.2:81195441-81195460 None:intergenic 40.0%
GAGATAAGGTGAATGTCAAG+TGG + chr8.2:81195184-81195203 None:intergenic 40.0%
GCTTTCATTCTTGGAACTGT+GGG - chr8.2:81195589-81195608 MS.gene39320:CDS 40.0%
GGGTTTGTGAATGTGTTTCA+AGG - chr8.2:81195808-81195827 MS.gene39320:CDS 40.0%
GGTACTTTCATTTCACCTTC+TGG - chr8.2:81195004-81195023 MS.gene39320:CDS 40.0%
GGTCTATGATGTAAGGAAGT+AGG + chr8.2:81195123-81195142 None:intergenic 40.0%
GTACTTTGAATGCCATCTCA+TGG - chr8.2:81195464-81195483 MS.gene39320:CDS 40.0%
GTAGAAAGTCCATGCTATAG+AGG + chr8.2:81194951-81194970 None:intergenic 40.0%
TCCCAAACAGTAACTCAACT+TGG + chr8.2:81195866-81195885 None:intergenic 40.0%
TGCTTTCATTCTTGGAACTG+TGG - chr8.2:81195588-81195607 MS.gene39320:CDS 40.0%
TGTAAGGAAGTAGGACTACT+TGG + chr8.2:81195114-81195133 None:intergenic 40.0%
TTGGGACTTTCTACTCTGAT+TGG - chr8.2:81195880-81195899 MS.gene39320:CDS 40.0%
TTGTCGGAACTTCTGACAAA+GGG - chr8.2:81195983-81196002 MS.gene39320:CDS 40.0%
TTTGGCATAGATTTGGATGG+GGG + chr8.2:81195257-81195276 None:intergenic 40.0%
! CGATAACTGCACGTTACTTT+AGG - chr8.2:81195509-81195528 MS.gene39320:CDS 40.0%
! GATTGGTGTTTCCATAGCTT+TGG - chr8.2:81195897-81195916 MS.gene39320:CDS 40.0%
! GCCAAGTTGAGTTACTGTTT+GGG - chr8.2:81195862-81195881 MS.gene39320:CDS 40.0%
! GGAACAAGTTCAGGAAGTAT+TGG - chr8.2:81195743-81195762 MS.gene39320:CDS 40.0%
! GTTTCAAGGGTTTGAAGTGA+TGG - chr8.2:81195822-81195841 MS.gene39320:CDS 40.0%
! TGCCAAGTTGAGTTACTGTT+TGG - chr8.2:81195861-81195880 MS.gene39320:CDS 40.0%
! TTCAAGGGTTTGAAGTGATG+GGG - chr8.2:81195824-81195843 MS.gene39320:CDS 40.0%
!! AAAGAAGACTAGCTCTAAGG+TGG + chr8.2:81194984-81195003 None:intergenic 40.0%
!! ACCAAAGAAGACTAGCTCTA+AGG + chr8.2:81194987-81195006 None:intergenic 40.0%
!! ACCTTAGAGCTAGTCTTCTT+TGG - chr8.2:81194983-81195002 MS.gene39320:CDS 40.0%
!! GAGAGAGTAGTGGAGATTTT+TGG + chr8.2:81195159-81195178 None:intergenic 40.0%
ACTTCTGACAAAGGGAGTAG+TGG - chr8.2:81195991-81196010 MS.gene39320:CDS 45.0%
AGAGTTCACCTCCAAAGCTA+TGG + chr8.2:81195911-81195930 None:intergenic 45.0%
ATTTCACCTTCTGGATGGGT+TGG - chr8.2:81195013-81195032 MS.gene39320:CDS 45.0%
CAAACGCTAGGAACAAGTTC+AGG - chr8.2:81195734-81195753 MS.gene39320:CDS 45.0%
CCTGACATCTCCGATGAAAT+GGG + chr8.2:81195052-81195071 None:intergenic 45.0%
CTGACATCTCCGATGAAATG+GGG + chr8.2:81195051-81195070 None:intergenic 45.0%
CTTGTCGGAACTTCTGACAA+AGG - chr8.2:81195982-81196001 MS.gene39320:CDS 45.0%
CTTTGTTGGGTACTCTTGTG+TGG - chr8.2:81195780-81195799 MS.gene39320:CDS 45.0%
GAGGTGGTTGGATGAATAGT+AGG + chr8.2:81195352-81195371 None:intergenic 45.0%
GGCCATATATGGTGGCAAAA+AGG - chr8.2:81195213-81195232 MS.gene39320:CDS 45.0%
GGGAATCAACCCCATTTCAT+CGG - chr8.2:81195039-81195058 MS.gene39320:CDS 45.0%
TCACCTTATCTCTTCCATGG+CGG - chr8.2:81195192-81195211 MS.gene39320:CDS 45.0%
TCCATGCTATAGAGGCTTGT+TGG + chr8.2:81194943-81194962 None:intergenic 45.0%
TCCTGACATCTCCGATGAAA+TGG + chr8.2:81195053-81195072 None:intergenic 45.0%
! ATCCACCTTGTTTGGAATCG+AGG - chr8.2:81195304-81195323 MS.gene39320:CDS 45.0%
! CCATGCTATAGAGGCTTGTT+GGG + chr8.2:81194942-81194961 None:intergenic 45.0%
! CTGAACTTGTTCCTAGCGTT+TGG + chr8.2:81195736-81195755 None:intergenic 45.0%
! GGCCTTTTTGCCACCATATA+TGG + chr8.2:81195218-81195237 None:intergenic 45.0%
! TCAAGGGTTTGAAGTGATGG+GGG - chr8.2:81195825-81195844 MS.gene39320:CDS 45.0%
! TGTTGTTTAGGCCAAACGCT+AGG - chr8.2:81195722-81195741 MS.gene39320:CDS 45.0%
!! AAGAGTACCCAACAAAGTGG+TGG + chr8.2:81195777-81195796 None:intergenic 45.0%
!! AGCTCTAAGGTGGAGTTATG+AGG + chr8.2:81194974-81194993 None:intergenic 45.0%
!! AGCTTTGGAGGTGAACTCTT+GGG - chr8.2:81195912-81195931 MS.gene39320:CDS 45.0%
!! ATGGGGTATTCTTTTGCCGA+TGG - chr8.2:81195483-81195502 MS.gene39320:CDS 45.0%
!! CACAAGAGTACCCAACAAAG+TGG + chr8.2:81195780-81195799 None:intergenic 45.0%
!! GCTCTAAGGTGGAGTTATGA+GGG + chr8.2:81194973-81194992 None:intergenic 45.0%
!! TAGCTTTGGAGGTGAACTCT+TGG - chr8.2:81195911-81195930 MS.gene39320:CDS 45.0%
!! TGGGGTATTCTTTTGCCGAT+GGG - chr8.2:81195484-81195503 MS.gene39320:CDS 45.0%
!! TGGTGTTTCCATAGCTTTGG+AGG - chr8.2:81195900-81195919 MS.gene39320:CDS 45.0%
AATGGAAGAGAGGTCAGTGG+AGG + chr8.2:81195371-81195390 None:intergenic 50.0%
AGGACTACTTGGCCTGAACT+TGG + chr8.2:81195103-81195122 None:intergenic 50.0%
CAACTTGGCATAGGATCTGC+TGG + chr8.2:81195851-81195870 None:intergenic 50.0%
CAAGGCTCCAAGGCAAAACA+CGG + chr8.2:81195689-81195708 None:intergenic 50.0%
CCCAACAAGCCTCTATAGCA+TGG - chr8.2:81194939-81194958 MS.gene39320:CDS 50.0%
CCCATTTCATCGGAGATGTC+AGG - chr8.2:81195049-81195068 MS.gene39320:CDS 50.0%
CTAAAGTCTGCAAGGCTCCA+AGG + chr8.2:81195699-81195718 None:intergenic 50.0%
GACCTCGATTCCAAACAAGG+TGG + chr8.2:81195309-81195328 None:intergenic 50.0%
GAGTAGAGTATAGCCTCCAC+AGG - chr8.2:81195650-81195669 MS.gene39320:CDS 50.0%
GCCTGAACTTGGGTCAGAAA+AGG + chr8.2:81195092-81195111 None:intergenic 50.0%
GGACTACTTGGCCTGAACTT+GGG + chr8.2:81195102-81195121 None:intergenic 50.0%
GTACCCAACAAAGTGGTGGT+AGG + chr8.2:81195773-81195792 None:intergenic 50.0%
TATAGCCTCCACAGGAAGCT+TGG - chr8.2:81195658-81195677 MS.gene39320:CDS 50.0%
TCAAGTGGTCGAGAGAGTAG+TGG + chr8.2:81195169-81195188 None:intergenic 50.0%
TCTTCCATGGCGGCCATATA+TGG - chr8.2:81195202-81195221 MS.gene39320:CDS 50.0%
TGAACCTGACAACACGTCCA+AGG + chr8.2:81195398-81195417 None:intergenic 50.0%
TGGAGGCTATACTCTACTCC+TGG + chr8.2:81195649-81195668 None:intergenic 50.0%
TTCAATCACTAGGTCCTGCG+TGG - chr8.2:81195536-81195555 MS.gene39320:CDS 50.0%
! AAGGTCTGTGTGTTGACGAG+CGG + chr8.2:81195422-81195441 None:intergenic 50.0%
! GCCTTTTCTGACCCAAGTTC+AGG - chr8.2:81195088-81195107 MS.gene39320:CDS 50.0%
!! ACCTTCTGGATGGGTTGGAT+GGG - chr8.2:81195018-81195037 MS.gene39320:CDS 50.0%
!! GCTATAGAGGCTTGTTGGGT+GGG + chr8.2:81194938-81194957 None:intergenic 50.0%
!! TGCTATAGAGGCTTGTTGGG+TGG + chr8.2:81194939-81194958 None:intergenic 50.0%
ACCTGACAACACGTCCAAGG+TGG + chr8.2:81195395-81195414 None:intergenic 55.0%
CAACACGTCCAAGGTGGCAA+TGG + chr8.2:81195389-81195408 None:intergenic 55.0%
CCAAGGTGGCAATGGAAGAG+AGG + chr8.2:81195381-81195400 None:intergenic 55.0%
CCTCTCTTCCATTGCCACCT+TGG - chr8.2:81195378-81195397 MS.gene39320:CDS 55.0%
CGATTCCAAGCTTCCTGTGG+AGG + chr8.2:81195666-81195685 None:intergenic 55.0%
CGTGCAGTTATCGCTCCCAT+CGG + chr8.2:81195502-81195521 None:intergenic 55.0%
CTCCTGGAGACAATTGCCCA+AGG + chr8.2:81195633-81195652 None:intergenic 55.0%
GCATGAGCATAGAACCACGC+AGG + chr8.2:81195553-81195572 None:intergenic 55.0%
GGCAATGGAAGAGAGGTCAG+TGG + chr8.2:81195374-81195393 None:intergenic 55.0%
GGGTACTCTTGTGTGGTGCT+CGG - chr8.2:81195787-81195806 MS.gene39320:CDS 55.0%
GGTACTCTTGTGTGGTGCTC+GGG - chr8.2:81195788-81195807 MS.gene39320:CDS 55.0%
TCCATGGCGGCCATATATGG+TGG - chr8.2:81195205-81195224 MS.gene39320:CDS 55.0%
TCGCCATTGGCATTCGCCTT+GGG - chr8.2:81195614-81195633 MS.gene39320:CDS 55.0%
TGGCCGCCATGGAAGAGATA+AGG + chr8.2:81195198-81195217 None:intergenic 55.0%
TTCGCCATTGGCATTCGCCT+TGG - chr8.2:81195613-81195632 MS.gene39320:CDS 55.0%
TTGCCCAAGGCGAATGCCAA+TGG + chr8.2:81195620-81195639 None:intergenic 55.0%
! GCGTGGTTCTATGCTCATGC+AGG - chr8.2:81195553-81195572 MS.gene39320:CDS 55.0%
! GGAATCGCCGTGTTTTGCCT+TGG - chr8.2:81195679-81195698 MS.gene39320:CDS 55.0%
!! CACCTTCTGGATGGGTTGGA+TGG - chr8.2:81195017-81195036 MS.gene39320:CDS 55.0%
!! CCTTCTGGATGGGTTGGATG+GGG - chr8.2:81195019-81195038 MS.gene39320:CDS 55.0%
CCCCATCCAACCCATCCAGA+AGG + chr8.2:81195022-81195041 None:intergenic 60.0%
CGCCTTGGGCAATTGTCTCC+AGG - chr8.2:81195628-81195647 MS.gene39320:CDS 60.0%
CGGCGATTCCAAGCTTCCTG+TGG + chr8.2:81195669-81195688 None:intergenic 60.0%
GAGAGGTCAGTGGAGGTGGT+TGG + chr8.2:81195364-81195383 None:intergenic 60.0%
GCCACCATATATGGCCGCCA+TGG + chr8.2:81195209-81195228 None:intergenic 60.0%
GCCACCTTGGACGTGTTGTC+AGG - chr8.2:81195391-81195410 MS.gene39320:CDS 60.0%
GGAACTGTGGGGTTCGCCAT+TGG - chr8.2:81195601-81195620 MS.gene39320:CDS 60.0%
GGAAGAGAGGTCAGTGGAGG+TGG + chr8.2:81195368-81195387 None:intergenic 60.0%
!! GATGGGGGCACCGTTGTGTA+TGG + chr8.2:81195242-81195261 None:intergenic 60.0%
!! GGGGGCACCGTTGTGTATGG+TGG + chr8.2:81195239-81195258 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 81194926 81196026 81194926 ID=MS.gene39320
chr8.2 mRNA 81194926 81196026 81194926 ID=MS.gene39320.t1;Parent=MS.gene39320
chr8.2 exon 81194926 81196026 81194926 ID=MS.gene39320.t1.exon1;Parent=MS.gene39320.t1
chr8.2 CDS 81194926 81196026 81194926 ID=cds.MS.gene39320.t1;Parent=MS.gene39320.t1
Gene Sequence

>MS.gene39320

ATGAATCTTCCCACCCAACAAGCCTCTATAGCATGGACTTTCTACCCTCATAACTCCACCTTAGAGCTAGTCTTCTTTGGTACTTTCATTTCACCTTCTGGATGGGTTGGATGGGGAATCAACCCCATTTCATCGGAGATGTCAGGAACTCGTGCTTTAATAGCCTTTTCTGACCCAAGTTCAGGCCAAGTAGTCCTACTTCCTTACATCATAGACCCGAATGTAAAGCTCCAAAAATCTCCACTACTCTCTCGACCACTTGACATTCACCTTATCTCTTCCATGGCGGCCATATATGGTGGCAAAAAGGCCACCATACACAACGGTGCCCCCATCCAAATCTATGCCAAATTCAAACTAGAATCAAACAAAACCAAAATCCACCTTGTTTGGAATCGAGGTCTTTATGTTCAAGGCTACTCGCCTACTATTCATCCAACCACCTCCACTGACCTCTCTTCCATTGCCACCTTGGACGTGTTGTCAGGTTCATCCGCTCGTCAACACACAGACCTTACAATGCTGAGAGTGATTCACGGTACTTTGAATGCCATCTCATGGGGTATTCTTTTGCCGATGGGAGCGATAACTGCACGTTACTTTAGGCATATTCAATCACTAGGTCCTGCGTGGTTCTATGCTCATGCAGGAATACAATTGTTTGCTTTCATTCTTGGAACTGTGGGGTTCGCCATTGGCATTCGCCTTGGGCAATTGTCTCCAGGAGTAGAGTATAGCCTCCACAGGAAGCTTGGAATCGCCGTGTTTTGCCTTGGAGCCTTGCAGACTTTAGCATTGTTGTTTAGGCCAAACGCTAGGAACAAGTTCAGGAAGTATTGGAAATCCTACCACCACTTTGTTGGGTACTCTTGTGTGGTGCTCGGGTTTGTGAATGTGTTTCAAGGGTTTGAAGTGATGGGGGCCAGCAGATCCTATGCCAAGTTGAGTTACTGTTTGGGACTTTCTACTCTGATTGGTGTTTCCATAGCTTTGGAGGTGAACTCTTGGGTGATATTCTGTAGGAAATCTAAGGAAGAGAAAATGAAGAGAGAAGGACTTGTCGGAACTTCTGACAAAGGGAGTAGTGGCATCCACACTTGA
Protein sequence

>MS.gene39320.t1

MNLPTQQASIAWTFYPHNSTLELVFFGTFISPSGWVGWGINPISSEMSGTRALIAFSDPSSGQVVLLPYIIDPNVKLQKSPLLSRPLDIHLISSMAAIYGGKKATIHNGAPIQIYAKFKLESNKTKIHLVWNRGLYVQGYSPTIHPTTSTDLSSIATLDVLSGSSARQHTDLTMLRVIHGTLNAISWGILLPMGAITARYFRHIQSLGPAWFYAHAGIQLFAFILGTVGFAIGIRLGQLSPGVEYSLHRKLGIAVFCLGALQTLALLFRPNARNKFRKYWKSYHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCRKSKEEKMKREGLVGTSDKGSSGIHT