Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39500.t1 | XP_013456979.1 | 98.9 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.00E+00 | 1235.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39500.t1 | Q9SGN6 | 62.3 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 4.3e-216 | 752.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39500.t1 | A0A072UYS7 | 98.9 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.0e+00 | 1235.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39500 | MS.gene62676 | PPI |
| MS.gene058592 | MS.gene39500 | PPI |
| MS.gene004330 | MS.gene39500 | PPI |
| MS.gene39500 | MS.gene95833 | PPI |
| MS.gene015641 | MS.gene39500 | PPI |
| MS.gene002651 | MS.gene39500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39500.t1 | MTR_4g088500 | 98.871 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1264 |
| MS.gene39500.t1 | MTR_7g116350 | 70.767 | 626 | 43 | 9 | 2 | 620 | 316 | 808 | 0.0 | 801 |
| MS.gene39500.t1 | MTR_2g005730 | 52.658 | 602 | 261 | 9 | 21 | 614 | 11 | 596 | 0.0 | 615 |
| MS.gene39500.t1 | MTR_8g095090 | 51.244 | 603 | 273 | 9 | 20 | 617 | 8 | 594 | 0.0 | 572 |
| MS.gene39500.t1 | MTR_8g095090 | 51.810 | 525 | 236 | 7 | 96 | 617 | 1 | 511 | 5.80e-175 | 507 |
| MS.gene39500.t1 | MTR_8g097210 | 41.491 | 617 | 320 | 11 | 25 | 611 | 11 | 616 | 2.80e-160 | 473 |
| MS.gene39500.t1 | MTR_3g084930 | 40.492 | 610 | 335 | 9 | 23 | 611 | 15 | 617 | 1.89e-156 | 463 |
| MS.gene39500.t1 | MTR_8g095110 | 43.377 | 604 | 288 | 12 | 21 | 616 | 12 | 569 | 7.73e-154 | 455 |
| MS.gene39500.t1 | MTR_8g095150 | 41.068 | 599 | 290 | 15 | 21 | 613 | 12 | 553 | 8.13e-144 | 429 |
| MS.gene39500.t1 | MTR_8g097210 | 42.561 | 531 | 281 | 8 | 96 | 611 | 1 | 522 | 1.17e-143 | 427 |
| MS.gene39500.t1 | MTR_8g095140 | 40.164 | 610 | 304 | 12 | 21 | 613 | 12 | 577 | 5.60e-140 | 420 |
| MS.gene39500.t1 | MTR_8g105700 | 40.436 | 596 | 300 | 9 | 22 | 611 | 6 | 552 | 3.59e-137 | 412 |
| MS.gene39500.t1 | MTR_2g005730 | 52.381 | 399 | 173 | 6 | 22 | 414 | 12 | 399 | 1.46e-132 | 396 |
| MS.gene39500.t1 | MTR_2g017740 | 38.602 | 601 | 297 | 12 | 25 | 611 | 22 | 564 | 7.18e-128 | 388 |
| MS.gene39500.t1 | MTR_8g095130 | 41.734 | 496 | 250 | 10 | 127 | 619 | 12 | 471 | 3.26e-115 | 352 |
| MS.gene39500.t1 | MTR_4g027860 | 42.241 | 348 | 170 | 6 | 273 | 611 | 79 | 404 | 5.27e-79 | 256 |
| MS.gene39500.t1 | MTR_4g027880 | 38.854 | 157 | 90 | 2 | 22 | 174 | 11 | 165 | 1.90e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39500.t1 | AT1G28380 | 62.276 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 0.0 | 765 |
| MS.gene39500.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 603 |
| MS.gene39500.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 603 |
| MS.gene39500.t1 | AT1G14780 | 38.799 | 616 | 343 | 13 | 23 | 611 | 10 | 618 | 2.09e-137 | 415 |
| MS.gene39500.t1 | AT1G29690 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 1.20e-133 | 403 |
| MS.gene39500.t1 | AT4G24290 | 48.961 | 337 | 153 | 6 | 21 | 348 | 10 | 336 | 3.88e-102 | 314 |
Find 151 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4.2:-22686344 | None:intergenic |
| TGTGATCTTCTGAAATTTCT+AGG | 0.199569 | 4.2:-22685931 | None:intergenic |
| CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4.2:-22685587 | None:intergenic |
| GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4.2:+22685561 | MS.gene39500:CDS |
| ACTAAGAGCCTTGCCTTTGA+TGG | 0.266531 | 4.2:+22684137 | MS.gene39500:CDS |
| CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4.2:+22686389 | MS.gene39500:CDS |
| TATTTGACCATAAGTATAAA+AGG | 0.297680 | 4.2:+22685527 | MS.gene39500:CDS |
| CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4.2:+22685905 | MS.gene39500:CDS |
| TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4.2:-22683322 | None:intergenic |
| GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4.2:+22684790 | MS.gene39500:CDS |
| TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4.2:-22685445 | None:intergenic |
| TTCAGGTTCATTGAAAAGTA+TGG | 0.316699 | 4.2:+22684602 | MS.gene39500:intron |
| GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4.2:-22685184 | None:intergenic |
| TTCAATAAGCAGGTTGATTC+GGG | 0.318983 | 4.2:+22685812 | MS.gene39500:intron |
| CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4.2:+22685262 | MS.gene39500:CDS |
| TTGAACTACTATTGTCAATA+TGG | 0.331381 | 4.2:-22683261 | None:intergenic |
| AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4.2:-22686056 | None:intergenic |
| GTCCATCCTGCGGCTATATC+AGG | 0.349930 | 4.2:+22684779 | MS.gene39500:CDS |
| TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4.2:+22685562 | MS.gene39500:CDS |
| TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4.2:-22686271 | None:intergenic |
| TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4.2:-22685974 | None:intergenic |
| CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4.2:-22685962 | None:intergenic |
| TTTCAATAAGCAGGTTGATT+CGG | 0.374923 | 4.2:+22685811 | MS.gene39500:intron |
| TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4.2:+22686093 | MS.gene39500:CDS |
| TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4.2:+22685830 | MS.gene39500:CDS |
| AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4.2:+22686390 | MS.gene39500:CDS |
| TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4.2:-22684082 | None:intergenic |
| TAATGTCATATCAATGTCTT+TGG | 0.396557 | 4.2:+22685222 | MS.gene39500:CDS |
| TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4.2:+22686094 | MS.gene39500:CDS |
| GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4.2:-22685247 | None:intergenic |
| TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4.2:+22686199 | MS.gene39500:CDS |
| GGAGCCCTTGTTGGCACAGG+TGG | 0.415772 | 4.2:-22686322 | None:intergenic |
| TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4.2:+22686081 | MS.gene39500:CDS |
| AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4.2:+22685819 | MS.gene39500:intron |
| AAAGACATTGATATGACATT+AGG | 0.419683 | 4.2:-22685220 | None:intergenic |
| GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4.2:-22685889 | None:intergenic |
| ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4.2:+22684621 | MS.gene39500:CDS |
| CTTAGTGGAAGCTGCATCCC+TGG | 0.425444 | 4.2:-22684120 | None:intergenic |
| GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4.2:+22684917 | MS.gene39500:intron |
| CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4.2:-22686388 | None:intergenic |
| CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4.2:+22684631 | MS.gene39500:CDS |
| TTATCAGACTTAATAGATAA+GGG | 0.435251 | 4.2:-22683331 | None:intergenic |
| GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4.2:-22683166 | None:intergenic |
| ACTAATAGCTATGGAAATGC+AGG | 0.435774 | 4.2:+22683136 | MS.gene39500:CDS |
| CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4.2:+22685490 | MS.gene39500:CDS |
| TTTATCAGACTTAATAGATA+AGG | 0.439387 | 4.2:-22683332 | None:intergenic |
| TTATCTATTAAGTCTGATAA+AGG | 0.439839 | 4.2:+22683334 | MS.gene39500:CDS |
| TTGGGAGCCCTTGTTGGCAC+AGG | 0.446071 | 4.2:-22686325 | None:intergenic |
| AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4.2:+22684916 | MS.gene39500:intron |
| AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4.2:+22684951 | MS.gene39500:CDS |
| AACAGACAACTATCATTGTC+GGG | 0.452760 | 4.2:+22684044 | MS.gene39500:CDS |
| ACTTACTCGGCAAGAGCAGC+GGG | 0.456388 | 4.2:-22684251 | None:intergenic |
| AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4.2:+22685847 | MS.gene39500:CDS |
| ATCAAAGGCAAGGCTCTTAG+TGG | 0.462014 | 4.2:-22684135 | None:intergenic |
| GTTAATAATACTAATAGCTA+TGG | 0.462044 | 4.2:+22683127 | MS.gene39500:CDS |
| AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4.2:+22684955 | MS.gene39500:CDS |
| CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4.2:-22686037 | None:intergenic |
| GTTTCAGTTGCCACGACAAT+GGG | 0.473101 | 4.2:+22685477 | MS.gene39500:CDS |
| ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4.2:-22685586 | None:intergenic |
| CTGATAAAGGTGATTGTACC+AGG | 0.476222 | 4.2:+22683347 | MS.gene39500:CDS |
| CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4.2:+22686074 | MS.gene39500:CDS |
| TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4.2:-22685842 | None:intergenic |
| GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4.2:+22683181 | MS.gene39500:CDS |
| CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4.2:-22685898 | None:intergenic |
| CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4.2:+22686167 | MS.gene39500:CDS |
| CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4.2:+22686400 | MS.gene39500:CDS |
| TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4.2:+22684620 | MS.gene39500:CDS |
| CAACAGACAACTATCATTGT+CGG | 0.500149 | 4.2:+22684043 | MS.gene39500:CDS |
| AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4.2:+22684141 | MS.gene39500:CDS |
| GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4.2:+22685851 | MS.gene39500:CDS |
| AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4.2:-22684704 | None:intergenic |
| GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4.2:+22686168 | MS.gene39500:CDS |
| TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4.2:+22685140 | MS.gene39500:CDS |
| TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4.2:-22684965 | None:intergenic |
| GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4.2:+22686421 | MS.gene39500:CDS |
| AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4.2:-22685180 | None:intergenic |
| TAGCTATGGAAATGCAGGGT+TGG | 0.526822 | 4.2:+22683141 | MS.gene39500:CDS |
| GACATTAGGAGACTGTGATA+TGG | 0.529982 | 4.2:-22685206 | None:intergenic |
| TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4.2:-22686255 | None:intergenic |
| AGTTTCAGTTGCCACGACAA+TGG | 0.531590 | 4.2:+22685476 | MS.gene39500:CDS |
| GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4.2:-22685998 | None:intergenic |
| GTGGTCCACCTGTGCCAACA+AGG | 0.536601 | 4.2:+22686317 | MS.gene39500:CDS |
| AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4.2:+22685141 | MS.gene39500:CDS |
| GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4.2:+22686364 | MS.gene39500:CDS |
| ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4.2:+22686295 | MS.gene39500:CDS |
| GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4.2:+22683233 | MS.gene39500:CDS |
| TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4.2:-22683321 | None:intergenic |
| CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4.2:+22685898 | MS.gene39500:CDS |
| TTGTCGGGAAAGATTCCATC+CGG | 0.552924 | 4.2:+22684059 | MS.gene39500:CDS |
| AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4.2:+22685145 | MS.gene39500:CDS |
| GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4.2:-22685605 | None:intergenic |
| ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4.2:+22686042 | MS.gene39500:CDS |
| TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4.2:-22685923 | None:intergenic |
| GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4.2:+22684632 | MS.gene39500:CDS |
| ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4.2:-22684074 | None:intergenic |
| CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4.2:-22686400 | None:intergenic |
| GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4.2:-22685192 | None:intergenic |
| TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4.2:-22684964 | None:intergenic |
| TACTTACTCGGCAAGAGCAG+CGG | 0.582249 | 4.2:-22684252 | None:intergenic |
| AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4.2:+22686441 | MS.gene39500:CDS |
| AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4.2:-22685838 | None:intergenic |
| TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4.2:-22684150 | None:intergenic |
| GCAGCGGGGTTCCACGAACA+AGG | 0.585598 | 4.2:-22684236 | None:intergenic |
| TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4.2:+22685256 | MS.gene39500:CDS |
| GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4.2:-22683365 | None:intergenic |
| GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4.2:+22685823 | MS.gene39500:intron |
| ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4.2:+22686238 | MS.gene39500:CDS |
| TACTTATGGTCAAATACAAG+AGG | 0.603599 | 4.2:-22685520 | None:intergenic |
| TGGTCCACCTGTGCCAACAA+GGG | 0.603608 | 4.2:+22686318 | MS.gene39500:CDS |
| GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4.2:+22685987 | MS.gene39500:CDS |
| GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4.2:+22686069 | MS.gene39500:CDS |
| TACATCGGTGCCCATTGTCG+TGG | 0.607453 | 4.2:-22685487 | None:intergenic |
| ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4.2:-22684960 | None:intergenic |
| CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4.2:+22686135 | MS.gene39500:CDS |
| CTAATAGCTATGGAAATGCA+GGG | 0.619542 | 4.2:+22683137 | MS.gene39500:CDS |
| CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4.2:-22683384 | None:intergenic |
| TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4.2:-22684145 | None:intergenic |
| ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4.2:+22686172 | MS.gene39500:CDS |
| AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4.2:-22684701 | None:intergenic |
| AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4.2:+22686382 | MS.gene39500:CDS |
| CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4.2:+22684928 | MS.gene39500:CDS |
| TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4.2:-22685982 | None:intergenic |
| ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4.2:+22685591 | MS.gene39500:CDS |
| GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4.2:+22686372 | MS.gene39500:CDS |
| GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4.2:+22685959 | MS.gene39500:CDS |
| ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4.2:+22685965 | MS.gene39500:CDS |
| GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4.2:+22684635 | MS.gene39500:CDS |
| ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4.2:-22685559 | None:intergenic |
| GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4.2:-22684078 | None:intergenic |
| ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4.2:+22686282 | MS.gene39500:CDS |
| TTCCTGATATAGCCGCAGGA+TGG | 0.640932 | 4.2:-22684781 | None:intergenic |
| TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4.2:-22683304 | None:intergenic |
| TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4.2:+22684622 | MS.gene39500:CDS |
| AACTCGGCAATTTATCATGG+TGG | 0.643726 | 4.2:+22686298 | MS.gene39500:CDS |
| ACAATAGTAGTTCAAACACA+AGG | 0.647296 | 4.2:+22683269 | MS.gene39500:CDS |
| TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4.2:+22684726 | MS.gene39500:CDS |
| ATCCGCAGAAAACCTCTCGT+CGG | 0.653656 | 4.2:-22684738 | None:intergenic |
| GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4.2:+22683187 | MS.gene39500:CDS |
| GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4.2:-22684957 | None:intergenic |
| GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4.2:+22685142 | MS.gene39500:CDS |
| AAGTTCTAATGTCCATCCTG+CGG | 0.667092 | 4.2:+22684769 | MS.gene39500:CDS |
| CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4.2:-22683377 | None:intergenic |
| TATGCCAACCTTATAACCAG+TGG | 0.681047 | 4.2:+22685176 | MS.gene39500:CDS |
| GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4.2:+22684918 | MS.gene39500:CDS |
| TAGTTGTCTGTTGAAATGCT+CGG | 0.693311 | 4.2:-22684033 | None:intergenic |
| GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4.2:-22685886 | None:intergenic |
| GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4.2:-22686397 | None:intergenic |
| CAATAGTAGTTCAAACACAA+GGG | 0.705935 | 4.2:+22683270 | MS.gene39500:CDS |
| AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4.2:-22685502 | None:intergenic |
| GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4.2:+22686424 | MS.gene39500:CDS |
| CTTACTCGGCAAGAGCAGCG+GGG | 0.766908 | 4.2:-22684250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAACTAAATAAACA+TGG | + | chr4.2:22684576-22684595 | MS.gene39500:intron | 10.0% |
| !! | AAGAAATAAAGATTTAAGTA+AGG | - | chr4.2:22684509-22684528 | None:intergenic | 15.0% |
| !! | AGAAGAAAAAAATAAGTATT+GGG | - | chr4.2:22685357-22685376 | None:intergenic | 15.0% |
| !! | ATGAAACTATTGAATATAAT+TGG | - | chr4.2:22683495-22683514 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATACTATTAACT+TGG | - | chr4.2:22684567-22684586 | None:intergenic | 15.0% |
| !!! | TATTATAAGAATTTCTTTTC+AGG | + | chr4.2:22685114-22685133 | MS.gene39500:intron | 15.0% |
| !! | ACATATAAGTGATATGAAAA+GGG | + | chr4.2:22683937-22683956 | MS.gene39500:intron | 20.0% |
| !! | AGATCATGAAGATAAAAATA+TGG | + | chr4.2:22684838-22684857 | MS.gene39500:intron | 20.0% |
| !! | CAGAAGAAAAAAATAAGTAT+TGG | - | chr4.2:22685358-22685377 | None:intergenic | 20.0% |
| !! | GTTAATAATACTAATAGCTA+TGG | + | chr4.2:22683127-22683146 | MS.gene39500:CDS | 20.0% |
| !! | TAAAACTATAAGCATTCATT+TGG | + | chr4.2:22684397-22684416 | MS.gene39500:intron | 20.0% |
| !! | TATTTGACCATAAGTATAAA+AGG | + | chr4.2:22685527-22685546 | MS.gene39500:CDS | 20.0% |
| !! | TGAAGATAAAAATATGGAAA+TGG | + | chr4.2:22684844-22684863 | MS.gene39500:intron | 20.0% |
| !! | TTATCAGACTTAATAGATAA+GGG | - | chr4.2:22683334-22683353 | None:intergenic | 20.0% |
| !! | TTATCTATTAAGTCTGATAA+AGG | + | chr4.2:22683334-22683353 | MS.gene39500:CDS | 20.0% |
| !! | TTCTTTGTTGAAATATATGT+TGG | + | chr4.2:22685386-22685405 | MS.gene39500:intron | 20.0% |
| !! | TTTATCAGACTTAATAGATA+AGG | - | chr4.2:22683335-22683354 | None:intergenic | 20.0% |
| !!! | ATATGAAAAGGGAAATTTTA+GGG | + | chr4.2:22683948-22683967 | MS.gene39500:intron | 20.0% |
| !!! | ATTATATGATTTTCTAGTTG+CGG | + | chr4.2:22683670-22683689 | MS.gene39500:intron | 20.0% |
| !!! | CAATACTTATTTTTTTCTTC+TGG | + | chr4.2:22685356-22685375 | MS.gene39500:intron | 20.0% |
| !!! | TATTAAAGAGTATTGAAACT+TGG | - | chr4.2:22685629-22685648 | None:intergenic | 20.0% |
| !!! | TGAAATTTTTTGTTTGCATT+TGG | + | chr4.2:22683829-22683848 | MS.gene39500:intron | 20.0% |
| ! | AAAAAAAAGGTAAATCAACC+AGG | - | chr4.2:22683915-22683934 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACATCATTCT+TGG | - | chr4.2:22685000-22685019 | None:intergenic | 25.0% |
| ! | AAAGACATTGATATGACATT+AGG | - | chr4.2:22685223-22685242 | None:intergenic | 25.0% |
| ! | ACGGTATTAACATAAAGTTT+GGG | - | chr4.2:22685589-22685608 | None:intergenic | 25.0% |
| ! | ACTATTGATAAAACACAGTT+AGG | - | chr4.2:22683650-22683669 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATGTTTGT+AGG | + | chr4.2:22684896-22684915 | MS.gene39500:intron | 25.0% |
| ! | CAAAAGTCAAAAGGTTAAAA+AGG | - | chr4.2:22683874-22683893 | None:intergenic | 25.0% |
| ! | CACTTATATGTCCAAAAAAA+AGG | - | chr4.2:22683928-22683947 | None:intergenic | 25.0% |
| ! | CTATTGAATATAATTGGTCA+TGG | - | chr4.2:22683489-22683508 | None:intergenic | 25.0% |
| ! | GAATTCAGTAATGAAGTAAT+AGG | - | chr4.2:22685250-22685269 | None:intergenic | 25.0% |
| ! | GACATATAAGTGATATGAAA+AGG | + | chr4.2:22683936-22683955 | MS.gene39500:intron | 25.0% |
| ! | GCATAACAATAATACTTACT+CGG | - | chr4.2:22684267-22684286 | None:intergenic | 25.0% |
| ! | TAATAGATAAGGGAACATTA+GGG | - | chr4.2:22683324-22683343 | None:intergenic | 25.0% |
| ! | TAATGTCATATCAATGTCTT+TGG | + | chr4.2:22685222-22685241 | MS.gene39500:CDS | 25.0% |
| ! | TAGTGATCAGAATTCAATTA+TGG | - | chr4.2:22683800-22683819 | None:intergenic | 25.0% |
| ! | TGCAAACAAAAAATTTCAAG+TGG | - | chr4.2:22683827-22683846 | None:intergenic | 25.0% |
| ! | TTAATAGATAAGGGAACATT+AGG | - | chr4.2:22683325-22683344 | None:intergenic | 25.0% |
| ! | TTCAATCAACTAGTTGAAAA+AGG | - | chr4.2:22683541-22683560 | None:intergenic | 25.0% |
| ! | TTGAACTACTATTGTCAATA+TGG | - | chr4.2:22683264-22683283 | None:intergenic | 25.0% |
| !! | ATAGAAAAGTTATTGACTAG+TGG | + | chr4.2:22683584-22683603 | MS.gene39500:intron | 25.0% |
| !! | ATCTAAAGTTGACATAAACT+CGG | + | chr4.2:22686282-22686301 | MS.gene39500:CDS | 25.0% |
| !! | GATATGAAAAGGGAAATTTT+AGG | + | chr4.2:22683947-22683966 | MS.gene39500:intron | 25.0% |
| !! | TATGAAAAGGGAAATTTTAG+GGG | + | chr4.2:22683949-22683968 | MS.gene39500:intron | 25.0% |
| !! | TCGACAAAATTAAGCATTTT+GGG | - | chr4.2:22686346-22686365 | None:intergenic | 25.0% |
| !! | TTGAATGTTACTGCTATTTA+GGG | - | chr4.2:22684451-22684470 | None:intergenic | 25.0% |
| !! | TTTTAGCAATTATAGAGCAA+GGG | - | chr4.2:22684382-22684401 | None:intergenic | 25.0% |
| !!! | AAAAAATAAGTATTGGGCAA+AGG | - | chr4.2:22685351-22685370 | None:intergenic | 25.0% |
| !!! | AAAGTACTTTTCTTAAGACT+TGG | + | chr4.2:22686124-22686143 | MS.gene39500:CDS | 25.0% |
| !!! | AAATGGATTTTTAAGTCATG+CGG | + | chr4.2:22685279-22685298 | MS.gene39500:CDS | 25.0% |
| !!! | TGGTTGATTTACCTTTTTTT+TGG | + | chr4.2:22683914-22683933 | MS.gene39500:intron | 25.0% |
| !!! | TTTTTTCACAGTTTCAGAAA+GGG | - | chr4.2:22684210-22684229 | None:intergenic | 25.0% |
| AAATCCTCCTATATGTTGAT+TGG | + | chr4.2:22684540-22684559 | MS.gene39500:intron | 30.0% | |
| AACAGGTATTCGTTTATACT+TGG | + | chr4.2:22685847-22685866 | MS.gene39500:CDS | 30.0% | |
| AAGAAATTGAAGCAGAAGTA+AGG | - | chr4.2:22683419-22683438 | None:intergenic | 30.0% | |
| ACAATAGTAGTTCAAACACA+AGG | + | chr4.2:22683269-22683288 | MS.gene39500:CDS | 30.0% | |
| ACTTGTATAGCAAGAATGTA+AGG | + | chr4.2:22685671-22685690 | MS.gene39500:intron | 30.0% | |
| ACTTTATGTTAATACCGTGA+AGG | + | chr4.2:22685591-22685610 | MS.gene39500:CDS | 30.0% | |
| ATAAACTCGGCAATTTATCA+TGG | + | chr4.2:22686295-22686314 | MS.gene39500:CDS | 30.0% | |
| ATCAGTCTTCAAAAGTCAAA+AGG | - | chr4.2:22683883-22683902 | None:intergenic | 30.0% | |
| CAATAGTAGTTCAAACACAA+GGG | + | chr4.2:22683270-22683289 | MS.gene39500:CDS | 30.0% | |
| CACGGTATTAACATAAAGTT+TGG | - | chr4.2:22685590-22685609 | None:intergenic | 30.0% | |
| CTAAATAAACATGGTTCTTC+AGG | + | chr4.2:22684585-22684604 | MS.gene39500:intron | 30.0% | |
| GACTTAAAAATCCATTTCCT+GGG | - | chr4.2:22685276-22685295 | None:intergenic | 30.0% | |
| GGCTATATCAGGAAAATTAA+AGG | + | chr4.2:22684790-22684809 | MS.gene39500:CDS | 30.0% | |
| TACTTATGGTCAAATACAAG+AGG | - | chr4.2:22685523-22685542 | None:intergenic | 30.0% | |
| TATAAACGAATACCTGTTAC+CGG | - | chr4.2:22685845-22685864 | None:intergenic | 30.0% | |
| TGACTTAAAAATCCATTTCC+TGG | - | chr4.2:22685277-22685296 | None:intergenic | 30.0% | |
| TGTTCGACATGAAAAAATGT+TGG | + | chr4.2:22684096-22684115 | MS.gene39500:CDS | 30.0% | |
| TTACATATTTGTGCTGAACA+TGG | - | chr4.2:22683565-22683584 | None:intergenic | 30.0% | |
| TTTAGCAATTATAGAGCAAG+GGG | - | chr4.2:22684381-22684400 | None:intergenic | 30.0% | |
| ! | AAATCCTGATTTTCTAGATG+AGG | - | chr4.2:22686206-22686225 | None:intergenic | 30.0% |
| ! | ACGCATTCCTTTTATACTTA+TGG | - | chr4.2:22685537-22685556 | None:intergenic | 30.0% |
| ! | AGTTGATATATTGAGCAAGT+TGG | + | chr4.2:22683617-22683636 | MS.gene39500:intron | 30.0% |
| ! | GTCGACAAAATTAAGCATTT+TGG | - | chr4.2:22686347-22686366 | None:intergenic | 30.0% |
| ! | GTTGAATGTTACTGCTATTT+AGG | - | chr4.2:22684452-22684471 | None:intergenic | 30.0% |
| ! | TCAACTTTAGATTGTTTCTC+AGG | - | chr4.2:22686274-22686293 | None:intergenic | 30.0% |
| ! | TGAATGTTACTGCTATTTAG+GGG | - | chr4.2:22684450-22684469 | None:intergenic | 30.0% |
| ! | TTCAGGTTCATTGAAAAGTA+TGG | + | chr4.2:22684602-22684621 | MS.gene39500:intron | 30.0% |
| ! | TTGGAGTGACTTTTTACAAT+TGG | - | chr4.2:22684981-22685000 | None:intergenic | 30.0% |
| !! | GTTTTAGCAATTATAGAGCA+AGG | - | chr4.2:22684383-22684402 | None:intergenic | 30.0% |
| !! | TGTGATCTTCTGAAATTTCT+AGG | - | chr4.2:22685934-22685953 | None:intergenic | 30.0% |
| !! | TTTCAATAAGCAGGTTGATT+CGG | + | chr4.2:22685811-22685830 | MS.gene39500:intron | 30.0% |
| !!! | CTTTTTTCACAGTTTCAGAA+AGG | - | chr4.2:22684211-22684230 | None:intergenic | 30.0% |
| AACAGACAACTATCATTGTC+GGG | + | chr4.2:22684044-22684063 | MS.gene39500:CDS | 35.0% | |
| AAGACTGATCATGTATTACC+TGG | + | chr4.2:22683894-22683913 | MS.gene39500:intron | 35.0% | |
| ACAATACAATAGCTCCAGAA+TGG | + | chr4.2:22686042-22686061 | MS.gene39500:CDS | 35.0% | |
| ACATGAAAAAATGTTGGTCC+AGG | + | chr4.2:22684102-22684121 | MS.gene39500:CDS | 35.0% | |
| ACTAATAGCTATGGAAATGC+AGG | + | chr4.2:22683136-22683155 | MS.gene39500:CDS | 35.0% | |
| ACTTGGTCCAATCAACATAT+AGG | - | chr4.2:22684550-22684569 | None:intergenic | 35.0% | |
| AGGATGATCATACAAAGCTT+AGG | + | chr4.2:22684916-22684935 | MS.gene39500:intron | 35.0% | |
| AGTAAGCATTTCTGTTCGAA+GGG | + | chr4.2:22685141-22685160 | MS.gene39500:CDS | 35.0% | |
| ATAAGAGTGAACTGAAGTGA+CGG | - | chr4.2:22685562-22685581 | None:intergenic | 35.0% | |
| ATAATAAGTTCGACTGTTCG+AGG | - | chr4.2:22685100-22685119 | None:intergenic | 35.0% | |
| ATCAACCTGCTTATTGAAAC+AGG | - | chr4.2:22685810-22685829 | None:intergenic | 35.0% | |
| CAACAGACAACTATCATTGT+CGG | + | chr4.2:22684043-22684062 | MS.gene39500:CDS | 35.0% | |
| CAATGACCTGATTAAAAGTG+AGG | - | chr4.2:22683387-22683406 | None:intergenic | 35.0% | |
| CATGAAAAAATGTTGGTCCA+GGG | + | chr4.2:22684103-22684122 | MS.gene39500:CDS | 35.0% | |
| CTAATAGCTATGGAAATGCA+GGG | + | chr4.2:22683137-22683156 | MS.gene39500:CDS | 35.0% | |
| CTGATTAAAAGTGAGGACAT+CGG | - | chr4.2:22683380-22683399 | None:intergenic | 35.0% | |
| CTTAAGACTTGGATACTCAA+CGG | + | chr4.2:22686135-22686154 | MS.gene39500:CDS | 35.0% | |
| GAAAATTCGCAGATCAGAAT+GGG | + | chr4.2:22686168-22686187 | MS.gene39500:CDS | 35.0% | |
| GAAGAACACACGATTATTGT+AGG | + | chr4.2:22685752-22685771 | MS.gene39500:intron | 35.0% | |
| GACGACTATTAACTAGAAGA+GGG | - | chr4.2:22684294-22684313 | None:intergenic | 35.0% | |
| GATGATCATACAAAGCTTAG+GGG | + | chr4.2:22684918-22684937 | MS.gene39500:CDS | 35.0% | |
| GGATGATCATACAAAGCTTA+GGG | + | chr4.2:22684917-22684936 | MS.gene39500:intron | 35.0% | |
| GGTATTCGTTTATACTTGGA+AGG | + | chr4.2:22685851-22685870 | MS.gene39500:CDS | 35.0% | |
| GTCTACATCTATTGTGACAA+AGG | + | chr4.2:22686069-22686088 | MS.gene39500:CDS | 35.0% | |
| TAGTAAGCATTTCTGTTCGA+AGG | + | chr4.2:22685140-22685159 | MS.gene39500:CDS | 35.0% | |
| TAGTTGTCTGTTGAAATGCT+CGG | - | chr4.2:22684036-22684055 | None:intergenic | 35.0% | |
| TCAACCTCATCTAGAAAATC+AGG | + | chr4.2:22686199-22686218 | MS.gene39500:CDS | 35.0% | |
| TCAACCTGCTTATTGAAACA+GGG | - | chr4.2:22685809-22685828 | None:intergenic | 35.0% | |
| TCACTTCAGTTCACTCTTAT+GGG | + | chr4.2:22685562-22685581 | MS.gene39500:CDS | 35.0% | |
| TCATTAGATACGATTCATCG+TGG | + | chr4.2:22683734-22683753 | MS.gene39500:intron | 35.0% | |
| TGACGACTATTAACTAGAAG+AGG | - | chr4.2:22684295-22684314 | None:intergenic | 35.0% | |
| TGATGAAGTTCTTCTATTGC+AGG | - | chr4.2:22685448-22685467 | None:intergenic | 35.0% | |
| TGTCGAACATGCTATTGAAT+TGG | - | chr4.2:22684085-22684104 | None:intergenic | 35.0% | |
| TGTTATGAACCATCCATCAA+AGG | - | chr4.2:22684153-22684172 | None:intergenic | 35.0% | |
| TTGTAGGAATTAGTTAGCAC+TGG | + | chr4.2:22685768-22685787 | MS.gene39500:intron | 35.0% | |
| ! | GATTTTCTAGATGAGGTTGA+AGG | - | chr4.2:22686199-22686218 | None:intergenic | 35.0% |
| ! | GCTTAATTTTGTCGACACAA+AGG | + | chr4.2:22686351-22686370 | MS.gene39500:CDS | 35.0% |
| ! | TGGTTTGAGGTTAAGCTAAT+GGG | + | chr4.2:22686094-22686113 | MS.gene39500:CDS | 35.0% |
| ! | TTGGTTTGAGGTTAAGCTAA+TGG | + | chr4.2:22686093-22686112 | MS.gene39500:CDS | 35.0% |
| ! | TTTTGTCGACACAAAGGAAA+TGG | + | chr4.2:22686357-22686376 | MS.gene39500:CDS | 35.0% |
| !! | GAGTATTGAAACTTGGAAGA+AGG | - | chr4.2:22685622-22685641 | None:intergenic | 35.0% |
| !! | TTCAATAAGCAGGTTGATTC+GGG | + | chr4.2:22685812-22685831 | MS.gene39500:intron | 35.0% |
| AACTCGGCAATTTATCATGG+TGG | + | chr4.2:22686298-22686317 | MS.gene39500:CDS | 40.0% | |
| AGAATAGATGCAAAGTGCAC+AGG | - | chr4.2:22685064-22685083 | None:intergenic | 40.0% | |
| AGATGTAGACTCATCCATTC+TGG | - | chr4.2:22686059-22686078 | None:intergenic | 40.0% | |
| AGCAATTTCTGCAGTTCAGT+CGG | - | chr4.2:22684707-22684726 | None:intergenic | 40.0% | |
| ATGGTACACACGTAGTTGTT+GGG | + | chr4.2:22684621-22684640 | MS.gene39500:CDS | 40.0% | |
| CAACACCAGAAGGAAAAACA+AGG | - | chr4.2:22683297-22683316 | None:intergenic | 40.0% | |
| CATCTATTGTGACAAAGGCT+TGG | + | chr4.2:22686074-22686093 | MS.gene39500:CDS | 40.0% | |
| CGAAAATTCGCAGATCAGAA+TGG | + | chr4.2:22686167-22686186 | MS.gene39500:CDS | 40.0% | |
| CTGATAAAGGTGATTGTACC+AGG | + | chr4.2:22683347-22683366 | MS.gene39500:CDS | 40.0% | |
| CTGGAGCTATTGTATTGTAC+AGG | - | chr4.2:22686040-22686059 | None:intergenic | 40.0% | |
| GAACATGCTATTGAATTGGC+CGG | - | chr4.2:22684081-22684100 | None:intergenic | 40.0% | |
| GACACAAAGGAAATGGTAAG+AGG | + | chr4.2:22686364-22686383 | MS.gene39500:CDS | 40.0% | |
| GACATTAGGAGACTGTGATA+TGG | - | chr4.2:22685209-22685228 | None:intergenic | 40.0% | |
| GCAAAGTTATGTGTAGAAGG+TGG | + | chr4.2:22686424-22686443 | MS.gene39500:CDS | 40.0% | |
| GGAAGAAGGAATTACCTTCA+CGG | - | chr4.2:22685608-22685627 | None:intergenic | 40.0% | |
| GGTGCAAAGTTATGTGTAGA+AGG | + | chr4.2:22686421-22686440 | MS.gene39500:CDS | 40.0% | |
| GTAAGCATTTCTGTTCGAAG+GGG | + | chr4.2:22685142-22685161 | MS.gene39500:CDS | 40.0% | |
| GTCACTTCAGTTCACTCTTA+TGG | + | chr4.2:22685561-22685580 | MS.gene39500:CDS | 40.0% | |
| TATGCCAACCTTATAACCAG+TGG | + | chr4.2:22685176-22685195 | MS.gene39500:CDS | 40.0% | |
| TATGGTACACACGTAGTTGT+TGG | + | chr4.2:22684620-22684639 | MS.gene39500:CDS | 40.0% | |
| TCATTACTGAATTCTGTCCC+AGG | + | chr4.2:22685256-22685275 | MS.gene39500:CDS | 40.0% | |
| TGGTCCAATCAACATATAGG+AGG | - | chr4.2:22684547-22684566 | None:intergenic | 40.0% | |
| ! | AAGTTCTAATGTCCATCCTG+CGG | + | chr4.2:22684769-22684788 | MS.gene39500:CDS | 40.0% |
| ! | AATTTTCCTGATATAGCCGC+AGG | - | chr4.2:22684788-22684807 | None:intergenic | 40.0% |
| ! | AGTTATTGACTAGTGGCAGA+TGG | + | chr4.2:22683591-22683610 | MS.gene39500:intron | 40.0% |
| !! | AAGGGAAATTTTAGGGGTGA+TGG | + | chr4.2:22683955-22683974 | MS.gene39500:intron | 40.0% |
| !! | AGGGAAATTTTAGGGGTGAT+GGG | + | chr4.2:22683956-22683975 | MS.gene39500:intron | 40.0% |
| !! | CGATGTCCTCACTTTTAATC+AGG | + | chr4.2:22683378-22683397 | MS.gene39500:CDS | 40.0% |
| !! | GATGCTGAAGATGGATTGAT+AGG | - | chr4.2:22685892-22685911 | None:intergenic | 40.0% |
| !! | TCTGAAATTTCTAGGACACC+TGG | - | chr4.2:22685926-22685945 | None:intergenic | 40.0% |
| AAGTTCGACTGTTCGAGGAT+AGG | - | chr4.2:22685095-22685114 | None:intergenic | 45.0% | |
| AATTTCTGCAGTTCAGTCGG+CGG | - | chr4.2:22684704-22684723 | None:intergenic | 45.0% | |
| ACTAAGAGCCTTGCCTTTGA+TGG | + | chr4.2:22684137-22684156 | MS.gene39500:CDS | 45.0% | |
| AGAGGATCCACCAGGATATT+GGG | + | chr4.2:22686390-22686409 | MS.gene39500:CDS | 45.0% | |
| AGAGGCAGATCACCATACAT+CGG | - | chr4.2:22685505-22685524 | None:intergenic | 45.0% | |
| AGGTGGCAGAATCTCAATCA+AGG | + | chr4.2:22686441-22686460 | MS.gene39500:CDS | 45.0% | |
| AGTTTCAGTTGCCACGACAA+TGG | + | chr4.2:22685476-22685495 | MS.gene39500:CDS | 45.0% | |
| ATCAAAGGCAAGGCTCTTAG+TGG | - | chr4.2:22684138-22684157 | None:intergenic | 45.0% | |
| ATGAGTGCAAAGCTTAGCCA+AGG | + | chr4.2:22686238-22686257 | MS.gene39500:CDS | 45.0% | |
| ATGCTATTGAATTGGCCGGA+TGG | - | chr4.2:22684077-22684096 | None:intergenic | 45.0% | |
| ATTCGCAGATCAGAATGGGA+TGG | + | chr4.2:22686172-22686191 | MS.gene39500:CDS | 45.0% | |
| CAAAGGAAAACCAAAGTCGC+AGG | - | chr4.2:22685334-22685353 | None:intergenic | 45.0% | |
| CCATCTTCAGCATCTTTCAG+AGG | + | chr4.2:22685898-22685917 | MS.gene39500:CDS | 45.0% | |
| CTGAATTCTGTCCCAGGAAA+TGG | + | chr4.2:22685262-22685281 | MS.gene39500:CDS | 45.0% | |
| GAAAACATGCTCCACTTCAC+TGG | - | chr4.2:22686001-22686020 | None:intergenic | 45.0% | |
| GAGAAAGCTGTGAGTGTGAT+TGG | + | chr4.2:22683181-22683200 | MS.gene39500:CDS | 45.0% | |
| GATCCTATTGACGAACCAGA+TGG | + | chr4.2:22685959-22685978 | MS.gene39500:CDS | 45.0% | |
| GATTCTCTGCTTGCAAGTCA+AGG | + | chr4.2:22683233-22683252 | MS.gene39500:CDS | 45.0% | |
| GCTTTCTCAGCTGCTAATTG+AGG | - | chr4.2:22683169-22683188 | None:intergenic | 45.0% | |
| GTAGTTGTTGGGGTGAAGAT+GGG | + | chr4.2:22684632-22684651 | MS.gene39500:CDS | 45.0% | |
| GTTTCAGTTGCCACGACAAT+GGG | + | chr4.2:22685477-22685496 | MS.gene39500:CDS | 45.0% | |
| TAGCTATGGAAATGCAGGGT+TGG | + | chr4.2:22683141-22683160 | MS.gene39500:CDS | 45.0% | |
| TCGACCCTGTTTCAATAAGC+AGG | + | chr4.2:22685802-22685821 | MS.gene39500:intron | 45.0% | |
| TCTCAGGTGAATGCAATCCT+TGG | - | chr4.2:22686258-22686277 | None:intergenic | 45.0% | |
| TGAACCATCCATCAAAGGCA+AGG | - | chr4.2:22684148-22684167 | None:intergenic | 45.0% | |
| TGGTAATACCACGCACTAGA+TGG | - | chr4.2:22683780-22683799 | None:intergenic | 45.0% | |
| TGGTACACACGTAGTTGTTG+GGG | + | chr4.2:22684622-22684641 | MS.gene39500:CDS | 45.0% | |
| TGTTAGATCCATCTAGTGCG+TGG | + | chr4.2:22683769-22683788 | MS.gene39500:intron | 45.0% | |
| TTAAGCAATTAGCCGACGAG+AGG | + | chr4.2:22684726-22684745 | MS.gene39500:CDS | 45.0% | |
| TTAGGGACAACAACACCAGA+AGG | - | chr4.2:22683307-22683326 | None:intergenic | 45.0% | |
| TTGTCGGGAAAGATTCCATC+CGG | + | chr4.2:22684059-22684078 | MS.gene39500:CDS | 45.0% | |
| ! | AAAAAGACGTGCCTTGTTCG+TGG | + | chr4.2:22684225-22684244 | MS.gene39500:CDS | 45.0% |
| ! | AGAGCCACTGGTTATAAGGT+TGG | - | chr4.2:22685183-22685202 | None:intergenic | 45.0% |
| ! | CCTCTGAAAGATGCTGAAGA+TGG | - | chr4.2:22685901-22685920 | None:intergenic | 45.0% |
| ! | GTTGAGAGCCACTGGTTATA+AGG | - | chr4.2:22685187-22685206 | None:intergenic | 45.0% |
| ! | TACAATTGGCCTGCCAACAA+GGG | - | chr4.2:22684967-22684986 | None:intergenic | 45.0% |
| ! | TGTGACAAAGGCTTGGTTTG+AGG | + | chr4.2:22686081-22686100 | MS.gene39500:CDS | 45.0% |
| ! | TTACAATTGGCCTGCCAACA+AGG | - | chr4.2:22684968-22684987 | None:intergenic | 45.0% |
| !! | GCTGAAGATGGATTGATAGG+TGG | - | chr4.2:22685889-22685908 | None:intergenic | 45.0% |
| !!! | AGGGACCTTGTTTTTCCTTC+TGG | + | chr4.2:22683289-22683308 | MS.gene39500:CDS | 45.0% |
| !!! | ATTTTAGGGGTGATGGGATG+TGG | + | chr4.2:22683962-22683981 | MS.gene39500:intron | 45.0% |
| AACAAACCTCCGTCCCTTGT+TGG | + | chr4.2:22684951-22684970 | MS.gene39500:CDS | 50.0% | |
| AACGAATACCTGTTACCGGC+CGG | - | chr4.2:22685841-22685860 | None:intergenic | 50.0% | |
| AGAGCCTTGCCTTTGATGGA+TGG | + | chr4.2:22684141-22684160 | MS.gene39500:CDS | 50.0% | |
| AGCATTTCTGTTCGAAGGGG+AGG | + | chr4.2:22685145-22685164 | MS.gene39500:CDS | 50.0% | |
| ATCCGCAGAAAACCTCTCGT+CGG | - | chr4.2:22684741-22684760 | None:intergenic | 50.0% | |
| CAGAGGATCCACCAGGATAT+TGG | + | chr4.2:22686389-22686408 | MS.gene39500:CDS | 50.0% | |
| CAGCATCTTTCAGAGGTTCC+AGG | + | chr4.2:22685905-22685924 | MS.gene39500:CDS | 50.0% | |
| CCAGTGACAACCCAATATCC+TGG | - | chr4.2:22686403-22686422 | None:intergenic | 50.0% | |
| CGTAGTTGTTGGGGTGAAGA+TGG | + | chr4.2:22684631-22684650 | MS.gene39500:CDS | 50.0% | |
| GCTACTACGAACCAGTGAAG+TGG | + | chr4.2:22685987-22686006 | MS.gene39500:CDS | 50.0% | |
| GGAAATGGTAAGAGGTCCAG+AGG | + | chr4.2:22686372-22686391 | MS.gene39500:CDS | 50.0% | |
| GTGACAACCCAATATCCTGG+TGG | - | chr4.2:22686400-22686419 | None:intergenic | 50.0% | |
| GTGATATGGTTGAGAGCCAC+TGG | - | chr4.2:22685195-22685214 | None:intergenic | 50.0% | |
| TACTTACTCGGCAAGAGCAG+CGG | - | chr4.2:22684255-22684274 | None:intergenic | 50.0% | |
| TGAGTAGACACCTGCGACTT+TGG | + | chr4.2:22685321-22685340 | MS.gene39500:intron | 50.0% | |
| TTCCTGATATAGCCGCAGGA+TGG | - | chr4.2:22684784-22684803 | None:intergenic | 50.0% | |
| ! | CAATATCCTGGTGGATCCTC+TGG | - | chr4.2:22686391-22686410 | None:intergenic | 50.0% |
| ! | CCAGGATATTGGGTTGTCAC+TGG | + | chr4.2:22686400-22686419 | MS.gene39500:CDS | 50.0% |
| ! | GCTGTGAGTGTGATTGGTCA+AGG | + | chr4.2:22683187-22683206 | MS.gene39500:CDS | 50.0% |
| !! | AGCAGGTTGATTCGGGAAAC+CGG | + | chr4.2:22685819-22685838 | MS.gene39500:intron | 50.0% |
| !! | AGCATTTTGGGAGCCCTTGT+TGG | - | chr4.2:22686334-22686353 | None:intergenic | 50.0% |
| !! | TCACTGGTTCGTAGTAGCCT+CGG | - | chr4.2:22685985-22686004 | None:intergenic | 50.0% |
| ACTTACTCGGCAAGAGCAGC+GGG | - | chr4.2:22684254-22684273 | None:intergenic | 55.0% | |
| ATTGACGAACCAGATGGCCG+AGG | + | chr4.2:22685965-22685984 | MS.gene39500:CDS | 55.0% | |
| CAAAGCTTAGGGGACTGCAC+AGG | + | chr4.2:22684928-22684947 | MS.gene39500:CDS | 55.0% | |
| CTTAGTGGAAGCTGCATCCC+TGG | - | chr4.2:22684123-22684142 | None:intergenic | 55.0% | |
| GAGGACATCGGATCGAAACC+TGG | - | chr4.2:22683368-22683387 | None:intergenic | 55.0% | |
| GTCCATCCTGCGGCTATATC+AGG | + | chr4.2:22684779-22684798 | MS.gene39500:CDS | 55.0% | |
| GTTGTTGGGGTGAAGATGGG+AGG | + | chr4.2:22684635-22684654 | MS.gene39500:CDS | 55.0% | |
| TGGTCCACCTGTGCCAACAA+GGG | + | chr4.2:22686318-22686337 | MS.gene39500:CDS | 55.0% | |
| ! | AGCCGACGAGAGGTTTTCTG+CGG | + | chr4.2:22684736-22684755 | MS.gene39500:CDS | 55.0% |
| ! | ATTGGCCTGCCAACAAGGGA+CGG | - | chr4.2:22684963-22684982 | None:intergenic | 55.0% |
| ! | CGGCCATCTGGTTCGTCAAT+AGG | - | chr4.2:22685965-22685984 | None:intergenic | 55.0% |
| ! | TACATCGGTGCCCATTGTCG+TGG | - | chr4.2:22685490-22685509 | None:intergenic | 55.0% |
| !! | CGACAATGGGCACCGATGTA+TGG | + | chr4.2:22685490-22685509 | MS.gene39500:CDS | 55.0% |
| AACCTCCGTCCCTTGTTGGC+AGG | + | chr4.2:22684955-22684974 | MS.gene39500:CDS | 60.0% | |
| AGAGGTCCAGAGGATCCACC+AGG | + | chr4.2:22686382-22686401 | MS.gene39500:CDS | 60.0% | |
| CTTACTCGGCAAGAGCAGCG+GGG | - | chr4.2:22684253-22684272 | None:intergenic | 60.0% | |
| GTGGTCCACCTGTGCCAACA+AGG | + | chr4.2:22686317-22686336 | MS.gene39500:CDS | 60.0% | |
| TCGTAGTAGCCTCGGCCATC+TGG | - | chr4.2:22685977-22685996 | None:intergenic | 60.0% | |
| TTGGGAGCCCTTGTTGGCAC+AGG | - | chr4.2:22686328-22686347 | None:intergenic | 60.0% | |
| !! | GGTTGATTCGGGAAACCGGC+CGG | + | chr4.2:22685823-22685842 | MS.gene39500:intron | 60.0% |
| GCAGCGGGGTTCCACGAACA+AGG | - | chr4.2:22684239-22684258 | None:intergenic | 65.0% | |
| GGAGCCCTTGTTGGCACAGG+TGG | - | chr4.2:22686325-22686344 | None:intergenic | 65.0% | |
| TCGGGAAACCGGCCGGTAAC+AGG | + | chr4.2:22685830-22685849 | MS.gene39500:CDS | 65.0% | |
| GGCCTGCCAACAAGGGACGG+AGG | - | chr4.2:22684960-22684979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 22683115 | 22686510 | 22683115 | ID=MS.gene39500 |
| chr4.2 | mRNA | 22683115 | 22686510 | 22683115 | ID=MS.gene39500.t1;Parent=MS.gene39500 |
| chr4.2 | exon | 22683115 | 22683399 | 22683115 | ID=MS.gene39500.t1.exon1;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22683115 | 22683399 | 22683115 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22684029 | 22684267 | 22684029 | ID=MS.gene39500.t1.exon2;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22684029 | 22684267 | 22684029 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22684607 | 22684811 | 22684607 | ID=MS.gene39500.t1.exon3;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22684607 | 22684811 | 22684607 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22684918 | 22685007 | 22684918 | ID=MS.gene39500.t1.exon4;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22684918 | 22685007 | 22684918 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22685136 | 22685319 | 22685136 | ID=MS.gene39500.t1.exon5;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22685136 | 22685319 | 22685136 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22685440 | 22685612 | 22685440 | ID=MS.gene39500.t1.exon6;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22685440 | 22685612 | 22685440 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| chr4.2 | exon | 22685824 | 22686510 | 22685824 | ID=MS.gene39500.t1.exon7;Parent=MS.gene39500.t1 |
| chr4.2 | CDS | 22685824 | 22686510 | 22685824 | ID=cds.MS.gene39500.t1;Parent=MS.gene39500.t1 |
| Gene Sequence |
| Protein sequence |
