Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39558.t1 | XP_024638208.1 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.40E-132 | 482.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39558.t1 | Q9LM93 | 86.3 | 241 | 33 | 0 | 3 | 243 | 6 | 246 | 4.6e-121 | 435.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39558.t1 | A0A396IBZ2 | 98.4 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 9.8e-133 | 482.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051975 | MS.gene39558 | 0.805891 | 1.07E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene39558 | 0.808591 | 2.87E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene39558 | -0.800306 | 1.53E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39558.t1 | MTR_4g087885 | 86.909 | 275 | 4 | 1 | 1 | 243 | 1 | 275 | 1.76e-172 | 476 |
| MS.gene39558.t1 | MTR_2g097220 | 96.618 | 207 | 7 | 0 | 37 | 243 | 31 | 237 | 7.77e-149 | 414 |
| MS.gene39558.t1 | MTR_7g026260 | 25.806 | 248 | 148 | 10 | 10 | 229 | 61 | 300 | 9.17e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39558.t1 | AT1G20575 | 86.307 | 241 | 33 | 0 | 3 | 243 | 6 | 246 | 7.90e-161 | 445 |
| MS.gene39558.t1 | AT2G39630 | 23.984 | 246 | 151 | 4 | 13 | 229 | 69 | 307 | 1.90e-12 | 66.2 |
| MS.gene39558.t1 | AT2G39630 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 2.32e-11 | 62.0 |
| MS.gene39558.t1 | AT2G39630 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 2.57e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGACAGGGTCTTTC+AGG | 0.128725 | 4.2:-23344873 | MS.gene39558:intron |
| TTGTTATTTGTAGACTTTAT+AGG | 0.210565 | 4.2:-23344763 | MS.gene39558:intron |
| AGGAAGCCTGGCAAATATTT+TGG | 0.222110 | 4.2:+23345120 | None:intergenic |
| GAAGATATACGAGGCCTTTC+AGG | 0.225607 | 4.2:+23343572 | None:intergenic |
| ACTGAAGGTGCTTGAATATA+AGG | 0.251080 | 4.2:+23346083 | None:intergenic |
| AAACAACTGCAACAGGTTTA+TGG | 0.254808 | 4.2:-23345702 | MS.gene39558:CDS |
| ACCGGGACTCGTTATGTTAA+AGG | 0.314815 | 4.2:-23344985 | MS.gene39558:CDS |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 4.2:-23343631 | MS.gene39558:CDS |
| GCAGGAACGGCTTATATTCA+TGG | 0.336863 | 4.2:-23345350 | MS.gene39558:intron |
| TTCAGAAAACAGTTGGAAAC+TGG | 0.361295 | 4.2:-23345021 | MS.gene39558:intron |
| TATTAGTTGCTGTGTTAGTA+AGG | 0.383935 | 4.2:-23344720 | MS.gene39558:CDS |
| GCAACTGCACCTCTTCAATA+TGG | 0.398792 | 4.2:+23344648 | None:intergenic |
| AGACCTAGGAAGATGGGTTT+AGG | 0.409396 | 4.2:-23345518 | MS.gene39558:intron |
| TGTTGTAAAACAACTGCAAC+AGG | 0.416602 | 4.2:-23345709 | MS.gene39558:CDS |
| ACTGGTGCTGATATAGTTAC+CGG | 0.430856 | 4.2:-23345003 | MS.gene39558:CDS |
| AATATTTGCCAGGCTTCCTT+AGG | 0.431974 | 4.2:-23345116 | MS.gene39558:intron |
| CATGGCATGAAGCATGCATC+TGG | 0.445124 | 4.2:-23345332 | MS.gene39558:CDS |
| TAAGGGATATGTCTTTCAAA+TGG | 0.448303 | 4.2:-23344702 | MS.gene39558:CDS |
| CTGCAGCCAAAATATTTGCC+AGG | 0.455165 | 4.2:-23345126 | MS.gene39558:intron |
| CCTGGTGTCTCAGATTTGAC+AGG | 0.470074 | 4.2:-23344883 | MS.gene39558:CDS |
| ATACCTAAACCCATCTTCCT+AGG | 0.477853 | 4.2:+23345515 | None:intergenic |
| AAGGTGGTGGTGTGCATGGA+TGG | 0.480388 | 4.2:-23344966 | MS.gene39558:CDS |
| ATAGTTCGAGCATCCAGAAA+AGG | 0.481126 | 4.2:-23344674 | MS.gene39558:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 4.2:+23343637 | None:intergenic |
| ACAACATCCTGGGTACCATC+AGG | 0.496739 | 4.2:+23345726 | None:intergenic |
| TTTACTTACCTAAGGAAGCC+TGG | 0.511532 | 4.2:+23345108 | None:intergenic |
| GTTAAAGGTGGTGGTGTGCA+TGG | 0.512654 | 4.2:-23344970 | MS.gene39558:CDS |
| ATTAGTTGCTGTGTTAGTAA+GGG | 0.512925 | 4.2:-23344719 | MS.gene39558:CDS |
| AAGAGCGAGACCTAGGAAGA+TGG | 0.517078 | 4.2:-23345525 | MS.gene39558:CDS |
| ACTCGTTATGTTAAAGGTGG+TGG | 0.518521 | 4.2:-23344979 | MS.gene39558:CDS |
| AAGTTATTGTTGTGGACGAT+GGG | 0.536570 | 4.2:-23345752 | MS.gene39558:CDS |
| ACCTTTAACATAACGAGTCC+CGG | 0.539507 | 4.2:+23344984 | None:intergenic |
| TAGTTCGAGCATCCAGAAAA+GGG | 0.542215 | 4.2:-23344673 | MS.gene39558:CDS |
| TTGAGTCGCTCGTTATATGT+AGG | 0.542448 | 4.2:+23346124 | None:intergenic |
| TTATGCGCAAACTAACAAGC+AGG | 0.553714 | 4.2:-23344939 | MS.gene39558:CDS |
| TGAATATAAGGTAAAGAATG+AGG | 0.557227 | 4.2:+23346095 | None:intergenic |
| GTATATGGAAGTTCAAAGCT+TGG | 0.558444 | 4.2:-23343616 | MS.gene39558:CDS |
| AGAGCGAGACCTAGGAAGAT+GGG | 0.559994 | 4.2:-23345524 | MS.gene39558:CDS |
| CTGGTGTCTCAGATTTGACA+GGG | 0.567238 | 4.2:-23344882 | MS.gene39558:CDS |
| GAAGTTATTGTTGTGGACGA+TGG | 0.573289 | 4.2:-23345753 | MS.gene39558:CDS |
| CTGGTGCTGATATAGTTACC+GGG | 0.595385 | 4.2:-23345002 | MS.gene39558:CDS |
| GAGATTGTTGAATACCTGAA+AGG | 0.601655 | 4.2:-23343586 | MS.gene39558:CDS |
| AGCTGTTAAGAGCGAGACCT+AGG | 0.614252 | 4.2:-23345532 | MS.gene39558:CDS |
| TATGCGCAAACTAACAAGCA+GGG | 0.621645 | 4.2:-23344938 | MS.gene39558:CDS |
| CCTGTCAAATCTGAGACACC+AGG | 0.627249 | 4.2:+23344883 | None:intergenic |
| TGGGAGTCCTGATGGTACCC+AGG | 0.629966 | 4.2:-23345733 | MS.gene39558:CDS |
| GTGGACGATGGGAGTCCTGA+TGG | 0.630791 | 4.2:-23345741 | MS.gene39558:CDS |
| TATGGAAGTTCAAAGCTTGG+TGG | 0.635176 | 4.2:-23343613 | MS.gene39558:CDS |
| ATGCGCAAACTAACAAGCAG+GGG | 0.658767 | 4.2:-23344937 | MS.gene39558:CDS |
| AAAAGGGTACCATATTGAAG+AGG | 0.662883 | 4.2:-23344657 | MS.gene39558:intron |
| GGGACTCGTTATGTTAAAGG+TGG | 0.685030 | 4.2:-23344982 | MS.gene39558:CDS |
| TTGTGATCAGAAGATATACG+AGG | 0.761495 | 4.2:+23343563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTCAATATTAATTATA+AGG | - | chr4.2:23343710-23343729 | MS.gene39558:intron | 10.0% |
| !! | ATATATCAAGATGTTATAAA+TGG | + | chr4.2:23345211-23345230 | None:intergenic | 15.0% |
| !!! | ATATGTAATTTTACATTTTG+GGG | - | chr4.2:23343735-23343754 | MS.gene39558:intron | 15.0% |
| !!! | ATCTATTTTGCATATATTTA+AGG | - | chr4.2:23345898-23345917 | MS.gene39558:intron | 15.0% |
| !!! | GATATGTAATTTTACATTTT+GGG | - | chr4.2:23343734-23343753 | MS.gene39558:intron | 15.0% |
| !!! | TGATATGTAATTTTACATTT+TGG | - | chr4.2:23343733-23343752 | MS.gene39558:intron | 15.0% |
| !! | ATTCTATTCCATATATTGAT+AGG | - | chr4.2:23345533-23345552 | MS.gene39558:CDS | 20.0% |
| !! | CTCTAAATCTTAATATTGAT+AGG | - | chr4.2:23345800-23345819 | MS.gene39558:intron | 20.0% |
| !! | TAAATCCTATGTCAATAAAA+AGG | + | chr4.2:23345310-23345329 | None:intergenic | 20.0% |
| !!! | AATGCCTTTTAGAATTTATA+GGG | - | chr4.2:23343882-23343901 | MS.gene39558:intron | 20.0% |
| !!! | ATATTTTGCGATTATCATTT+CGG | + | chr4.2:23345693-23345712 | None:intergenic | 20.0% |
| !!! | TCACAAGTTTTATGAATAAA+AGG | + | chr4.2:23345270-23345289 | None:intergenic | 20.0% |
| !!! | TTGTTATTTGTAGACTTTAT+AGG | - | chr4.2:23344967-23344986 | MS.gene39558:CDS | 20.0% |
| ! | ACTCTAAATGATATGATGAA+GGG | + | chr4.2:23344154-23344173 | None:intergenic | 25.0% |
| ! | ATAGCCCTATAAATTCTAAA+AGG | + | chr4.2:23343889-23343908 | None:intergenic | 25.0% |
| ! | ATGTTCTTATGAATCATATG+TGG | - | chr4.2:23343766-23343785 | MS.gene39558:intron | 25.0% |
| ! | CAAAATATGGAAATTATTCC+AGG | - | chr4.2:23345705-23345724 | MS.gene39558:CDS | 25.0% |
| ! | GAAATGATAATCGCAAAATA+TGG | - | chr4.2:23345692-23345711 | MS.gene39558:CDS | 25.0% |
| ! | TAACTAACAGTAGAAAGAAT+CGG | + | chr4.2:23345737-23345756 | None:intergenic | 25.0% |
| ! | TACTCTAAATGATATGATGA+AGG | + | chr4.2:23344155-23344174 | None:intergenic | 25.0% |
| ! | TATAAATGACTAGTGATTTG+TGG | - | chr4.2:23344098-23344117 | MS.gene39558:intron | 25.0% |
| ! | TATGAATCATATGTGGATAA+TGG | - | chr4.2:23343773-23343792 | MS.gene39558:intron | 25.0% |
| ! | TCTGATGTGATAAAACATTA+TGG | - | chr4.2:23344278-23344297 | MS.gene39558:intron | 25.0% |
| ! | TCTTAATATTGATAGGCTAT+TGG | - | chr4.2:23345807-23345826 | MS.gene39558:intron | 25.0% |
| ! | TGAATATAAGGTAAAGAATG+AGG | + | chr4.2:23343638-23343657 | None:intergenic | 25.0% |
| ! | TGATCAATTGTGACTTAATA+AGG | + | chr4.2:23345433-23345452 | None:intergenic | 25.0% |
| ! | TTAAAAGCTTTACTTACCTA+AGG | + | chr4.2:23344633-23344652 | None:intergenic | 25.0% |
| ! | TTCTATTCTTTACATTAACC+TGG | - | chr4.2:23345116-23345135 | MS.gene39558:intron | 25.0% |
| !! | ATAATGTTTTATCACATCAG+AGG | + | chr4.2:23344279-23344298 | None:intergenic | 25.0% |
| !! | CTTTTTGCTTCTCAATTTTA+GGG | - | chr4.2:23343943-23343962 | MS.gene39558:intron | 25.0% |
| !! | TCTTTTTGCTTCTCAATTTT+AGG | - | chr4.2:23343942-23343961 | MS.gene39558:intron | 25.0% |
| !! | TTTTGCATATATTTAAGGAG+AGG | - | chr4.2:23345903-23345922 | MS.gene39558:intron | 25.0% |
| !!! | ACTGTTTTCTGAAAAACAAA+AGG | + | chr4.2:23344702-23344721 | None:intergenic | 25.0% |
| !!! | CTGTTTTCTGAAAAACAAAA+GGG | + | chr4.2:23344701-23344720 | None:intergenic | 25.0% |
| !!! | GAATGCCTTTTAGAATTTAT+AGG | - | chr4.2:23343881-23343900 | MS.gene39558:intron | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | - | chr4.2:23343970-23343989 | MS.gene39558:intron | 25.0% |
| !!! | TGGAAATTTTGTTGTCATTA+TGG | - | chr4.2:23344418-23344437 | MS.gene39558:intron | 25.0% |
| !!! | TGTGGTCTATTCTATTTTTT+GGG | - | chr4.2:23344116-23344135 | MS.gene39558:intron | 25.0% |
| !!! | TTGTGGTCTATTCTATTTTT+TGG | - | chr4.2:23344115-23344134 | MS.gene39558:intron | 25.0% |
| !!! | TTTGTTTTTCAGAAAACAGT+TGG | - | chr4.2:23344702-23344721 | MS.gene39558:CDS | 25.0% |
| AAAACACTCACTAAACTTTG+AGG | + | chr4.2:23344904-23344923 | None:intergenic | 30.0% | |
| AAAACTTGTGAACTGAATGA+TGG | - | chr4.2:23345279-23345298 | MS.gene39558:intron | 30.0% | |
| AAAGTGAATAAGCTCAAACA+GGG | + | chr4.2:23346040-23346059 | None:intergenic | 30.0% | |
| AACTAACAGTAGAAAGAATC+GGG | + | chr4.2:23345736-23345755 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | - | chr4.2:23346099-23346118 | MS.gene39558:CDS | 30.0% | |
| ACCAATAGCCTATCAATATA+TGG | + | chr4.2:23345544-23345563 | None:intergenic | 30.0% | |
| AGAGATAGAGAAATTACTGA+AGG | + | chr4.2:23343665-23343684 | None:intergenic | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+GGG | - | chr4.2:23345011-23345030 | MS.gene39558:CDS | 30.0% | |
| CATCTATGCAACAAGTATTT+GGG | + | chr4.2:23345996-23346015 | None:intergenic | 30.0% | |
| TAAGGGATATGTCTTTCAAA+TGG | - | chr4.2:23345028-23345047 | MS.gene39558:intron | 30.0% | |
| TATGGAATAGAATGTCTACA+TGG | + | chr4.2:23345526-23345545 | None:intergenic | 30.0% | |
| TATTAGTTGCTGTGTTAGTA+AGG | - | chr4.2:23345010-23345029 | MS.gene39558:CDS | 30.0% | |
| TCAGGTAAAGAGATTGATAA+TGG | - | chr4.2:23344875-23344894 | MS.gene39558:CDS | 30.0% | |
| TCCATATATTGATAGGCTAT+TGG | - | chr4.2:23345540-23345559 | MS.gene39558:intron | 30.0% | |
| ! | ATTTCCATCTCTTCCAATTT+TGG | + | chr4.2:23343849-23343868 | None:intergenic | 30.0% |
| ! | CACATCCTTTTTATTGACAT+AGG | - | chr4.2:23345302-23345321 | MS.gene39558:CDS | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | - | chr4.2:23344824-23344843 | MS.gene39558:intron | 30.0% |
| ! | TTTCCATCTCTTCCAATTTT+GGG | + | chr4.2:23343848-23343867 | None:intergenic | 30.0% |
| !! | ATGTGATTAATTTGCAGGAA+CGG | - | chr4.2:23344367-23344386 | MS.gene39558:intron | 30.0% |
| !! | TTTTCTGAAAAACAAAAGGG+AGG | + | chr4.2:23344698-23344717 | None:intergenic | 30.0% |
| !!! | TCAGCATGTGTTTTTTGTAA+AGG | - | chr4.2:23345481-23345500 | MS.gene39558:intron | 30.0% |
| AAACAACTGCAACAGGTTTA+TGG | - | chr4.2:23344028-23344047 | MS.gene39558:intron | 35.0% | |
| AAACCAATCAAGTGATCAAC+CGG | + | chr4.2:23344932-23344951 | None:intergenic | 35.0% | |
| AAGTTATTGTTGTGGACGAT+GGG | - | chr4.2:23343978-23343997 | MS.gene39558:intron | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | + | chr4.2:23346096-23346115 | None:intergenic | 35.0% | |
| AGTAACCGTGTATATTCTTG+TGG | - | chr4.2:23344171-23344190 | MS.gene39558:intron | 35.0% | |
| ATGAAGTTGACATAACAACC+AGG | + | chr4.2:23345137-23345156 | None:intergenic | 35.0% | |
| ATTAACGTTGCCAATTTGAC+TGG | - | chr4.2:23345630-23345649 | MS.gene39558:intron | 35.0% | |
| CAAAGTGAATAAGCTCAAAC+AGG | + | chr4.2:23346041-23346060 | None:intergenic | 35.0% | |
| CCATCTATGCAACAAGTATT+TGG | + | chr4.2:23345997-23346016 | None:intergenic | 35.0% | |
| CTGCAAATTAATCACATCAG+AGG | + | chr4.2:23344364-23344383 | None:intergenic | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | - | chr4.2:23346144-23346163 | MS.gene39558:CDS | 35.0% | |
| GGATTAGGGAATATATGCAT+TGG | + | chr4.2:23345384-23345403 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | - | chr4.2:23346114-23346133 | MS.gene39558:CDS | 35.0% | |
| TATGCAACAAGTATTTGGGA+AGG | + | chr4.2:23345992-23346011 | None:intergenic | 35.0% | |
| TGTATAACTGCCAGTCAAAT+TGG | + | chr4.2:23345643-23345662 | None:intergenic | 35.0% | |
| TGTCTACATGGATAAGTACA+TGG | + | chr4.2:23345514-23345533 | None:intergenic | 35.0% | |
| TGTTGTAAAACAACTGCAAC+AGG | - | chr4.2:23344021-23344040 | MS.gene39558:intron | 35.0% | |
| TTCAGAAAACAGTTGGAAAC+TGG | - | chr4.2:23344709-23344728 | MS.gene39558:CDS | 35.0% | |
| TTGTGATCAGAAGATATACG+AGG | + | chr4.2:23346170-23346189 | None:intergenic | 35.0% | |
| ! | CCAAATACTTGTTGCATAGA+TGG | - | chr4.2:23345994-23346013 | MS.gene39558:intron | 35.0% |
| ! | CTTCCTTTTCAACCCAAAAT+TGG | - | chr4.2:23343833-23343852 | MS.gene39558:intron | 35.0% |
| ! | TTCAATATGGTACCCTTTTC+TGG | + | chr4.2:23345072-23345091 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATTGAAG+AGG | - | chr4.2:23345073-23345092 | MS.gene39558:intron | 35.0% |
| !! | ACTGAAGGTGCTTGAATATA+AGG | + | chr4.2:23343650-23343669 | None:intergenic | 35.0% |
| !! | CAGTTGTTTTACAACATCCT+GGG | + | chr4.2:23344017-23344036 | None:intergenic | 35.0% |
| !! | CTCTGATGTGATTAATTTGC+AGG | - | chr4.2:23344362-23344381 | MS.gene39558:intron | 35.0% |
| !!! | CTTCCAATTTTGGGTTGAAA+AGG | + | chr4.2:23343839-23343858 | None:intergenic | 35.0% |
| AACCAATCAAGTGATCAACC+GGG | + | chr4.2:23344931-23344950 | None:intergenic | 40.0% | |
| AATATTTGCCAGGCTTCCTT+AGG | - | chr4.2:23344614-23344633 | MS.gene39558:intron | 40.0% | |
| ACCTTTAACATAACGAGTCC+CGG | + | chr4.2:23344749-23344768 | None:intergenic | 40.0% | |
| ACTCGTTATGTTAAAGGTGG+TGG | - | chr4.2:23344751-23344770 | MS.gene39558:CDS | 40.0% | |
| ACTGAACAGAGCAACTTACA+TGG | + | chr4.2:23344460-23344479 | None:intergenic | 40.0% | |
| ATACCTAAACCCATCTTCCT+AGG | + | chr4.2:23344218-23344237 | None:intergenic | 40.0% | |
| ATAGTTCGAGCATCCAGAAA+AGG | - | chr4.2:23345056-23345075 | MS.gene39558:intron | 40.0% | |
| CAACCCAAAATTGGAAGAGA+TGG | - | chr4.2:23343842-23343861 | MS.gene39558:intron | 40.0% | |
| CATTTCTATAATCCACCAGC+AGG | + | chr4.2:23345356-23345375 | None:intergenic | 40.0% | |
| GAAGTTATTGTTGTGGACGA+TGG | - | chr4.2:23343977-23343996 | MS.gene39558:intron | 40.0% | |
| GAGAGGATTTGAATGCTTGT+TGG | - | chr4.2:23345920-23345939 | MS.gene39558:intron | 40.0% | |
| TAGTTCGAGCATCCAGAAAA+GGG | - | chr4.2:23345057-23345076 | MS.gene39558:intron | 40.0% | |
| TATGCGCAAACTAACAAGCA+GGG | - | chr4.2:23344792-23344811 | MS.gene39558:intron | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+TGG | - | chr4.2:23346117-23346136 | MS.gene39558:CDS | 40.0% | |
| TGCAGCCACAAGAATATACA+CGG | + | chr4.2:23344179-23344198 | None:intergenic | 40.0% | |
| TGTATGTACTTTGTCCGTTG+AGG | - | chr4.2:23345455-23345474 | MS.gene39558:intron | 40.0% | |
| TTATGCGCAAACTAACAAGC+AGG | - | chr4.2:23344791-23344810 | MS.gene39558:intron | 40.0% | |
| TTGAGTCGCTCGTTATATGT+AGG | + | chr4.2:23343609-23343628 | None:intergenic | 40.0% | |
| TTTACTTACCTAAGGAAGCC+TGG | + | chr4.2:23344625-23344644 | None:intergenic | 40.0% | |
| ! | AAAAGGGAGGAGTTAAGTTG+TGG | + | chr4.2:23344685-23344704 | None:intergenic | 40.0% |
| ! | AAGTCTTATCCCACTAAGTG+GGG | + | chr4.2:23345847-23345866 | None:intergenic | 40.0% |
| ! | AGGAAGCCTGGCAAATATTT+TGG | + | chr4.2:23344613-23344632 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | + | chr4.2:23345848-23345867 | None:intergenic | 40.0% |
| !! | ACTGGTGCTGATATAGTTAC+CGG | - | chr4.2:23344727-23344746 | MS.gene39558:CDS | 40.0% |
| !! | ATAGGCTATTGGTCTTCTGT+AGG | - | chr4.2:23345551-23345570 | MS.gene39558:intron | 40.0% |
| !! | GCAGTTGTTTTACAACATCC+TGG | + | chr4.2:23344018-23344037 | None:intergenic | 40.0% |
| !! | TTAGTGAGTGTTTTTGCTCC+CGG | - | chr4.2:23344910-23344929 | MS.gene39558:CDS | 40.0% |
| ACACATGCTGATAGCCTCAA+CGG | + | chr4.2:23345472-23345491 | None:intergenic | 45.0% | |
| ACCGGGACTCGTTATGTTAA+AGG | - | chr4.2:23344745-23344764 | MS.gene39558:CDS | 45.0% | |
| AGAAAGAATCGGGACAATCC+TGG | + | chr4.2:23345726-23345745 | None:intergenic | 45.0% | |
| ATGCGCAAACTAACAAGCAG+GGG | - | chr4.2:23344793-23344812 | MS.gene39558:intron | 45.0% | |
| ATGTAGCTGAACCCACTTAG+TGG | - | chr4.2:23344314-23344333 | MS.gene39558:intron | 45.0% | |
| CAGATTTGACAGGGTCTTTC+AGG | - | chr4.2:23344857-23344876 | MS.gene39558:intron | 45.0% | |
| CCACTTAGTGGGATAAGACT+TGG | - | chr4.2:23345846-23345865 | MS.gene39558:intron | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | - | chr4.2:23344604-23344623 | MS.gene39558:intron | 45.0% | |
| CTGGTGTCTCAGATTTGACA+GGG | - | chr4.2:23344848-23344867 | MS.gene39558:intron | 45.0% | |
| GAAGATATACGAGGCCTTTC+AGG | + | chr4.2:23346161-23346180 | None:intergenic | 45.0% | |
| GCAACTGCACCTCTTCAATA+TGG | + | chr4.2:23345085-23345104 | None:intergenic | 45.0% | |
| GCAGGAACGGCTTATATTCA+TGG | - | chr4.2:23344380-23344399 | MS.gene39558:intron | 45.0% | |
| GCATATATTCCCTAATCCCG+TGG | - | chr4.2:23345386-23345405 | MS.gene39558:intron | 45.0% | |
| GGGACTCGTTATGTTAAAGG+TGG | - | chr4.2:23344748-23344767 | MS.gene39558:CDS | 45.0% | |
| GTCATAGTCAACTGAAGCCA+CGG | + | chr4.2:23345406-23345425 | None:intergenic | 45.0% | |
| TACACTTTACAGATGCCTGC+TGG | - | chr4.2:23345338-23345357 | MS.gene39558:CDS | 45.0% | |
| TCATAGTCAACTGAAGCCAC+GGG | + | chr4.2:23345405-23345424 | None:intergenic | 45.0% | |
| TGAACCCACTTAGTGGGATA+AGG | - | chr4.2:23344321-23344340 | MS.gene39558:intron | 45.0% | |
| TGTAGCTGAACCCACTTAGT+GGG | - | chr4.2:23344315-23344334 | MS.gene39558:intron | 45.0% | |
| ! | ACTAAGTGGGTTCAGCTACA+TGG | + | chr4.2:23344315-23344334 | None:intergenic | 45.0% |
| ! | AGACCTAGGAAGATGGGTTT+AGG | - | chr4.2:23344212-23344231 | MS.gene39558:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.2:23344328-23344347 | None:intergenic | 45.0% |
| ! | CCAAGTCTTATCCCACTAAG+TGG | + | chr4.2:23345849-23345868 | None:intergenic | 45.0% |
| ! | GCACAAACACTTTTATGGCC+TGG | - | chr4.2:23344829-23344848 | MS.gene39558:intron | 45.0% |
| !! | CTGGTGCTGATATAGTTACC+GGG | - | chr4.2:23344728-23344747 | MS.gene39558:CDS | 45.0% |
| AAGAGCGAGACCTAGGAAGA+TGG | - | chr4.2:23344205-23344224 | MS.gene39558:intron | 50.0% | |
| ACAACATCCTGGGTACCATC+AGG | + | chr4.2:23344007-23344026 | None:intergenic | 50.0% | |
| ACTTTACAGATGCCTGCTGG+TGG | - | chr4.2:23345341-23345360 | MS.gene39558:CDS | 50.0% | |
| AGAGCGAGACCTAGGAAGAT+GGG | - | chr4.2:23344206-23344225 | MS.gene39558:intron | 50.0% | |
| AGCTGTTAAGAGCGAGACCT+AGG | - | chr4.2:23344198-23344217 | MS.gene39558:intron | 50.0% | |
| CAACTGAAGCCACGGGATTA+GGG | + | chr4.2:23345398-23345417 | None:intergenic | 50.0% | |
| CATGGCATGAAGCATGCATC+TGG | - | chr4.2:23344398-23344417 | MS.gene39558:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.2:23344326-23344345 | MS.gene39558:intron | 50.0% | |
| CCTCAGTTTCACGTGTGTAC+AGG | - | chr4.2:23346068-23346087 | MS.gene39558:intron | 50.0% | |
| CCTGGTGTCTCAGATTTGAC+AGG | - | chr4.2:23344847-23344866 | MS.gene39558:intron | 50.0% | |
| CCTGTACACACGTGAAACTG+AGG | + | chr4.2:23346071-23346090 | None:intergenic | 50.0% | |
| CTCCCGGTTGATCACTTGAT+TGG | - | chr4.2:23344926-23344945 | MS.gene39558:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr4.2:23345843-23345862 | None:intergenic | 50.0% | |
| TCAACTGAAGCCACGGGATT+AGG | + | chr4.2:23345399-23345418 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.2:23344329-23344348 | None:intergenic | 50.0% |
| ! | CCTGTCAAATCTGAGACACC+AGG | + | chr4.2:23344850-23344869 | None:intergenic | 50.0% |
| ! | GTTAAAGGTGGTGGTGTGCA+TGG | - | chr4.2:23344760-23344779 | MS.gene39558:intron | 50.0% |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr4.2:23345835-23345854 | MS.gene39558:intron | 55.0% | |
| ! | AAGGTGGTGGTGTGCATGGA+TGG | - | chr4.2:23344764-23344783 | MS.gene39558:intron | 55.0% |
| ! | GGGAGGAGTTAAGTTGTGGC+AGG | + | chr4.2:23344681-23344700 | None:intergenic | 55.0% |
| CTGTAGCCGACCCCACTTAG+TGG | - | chr4.2:23345834-23345853 | MS.gene39558:intron | 60.0% | |
| GTGGACGATGGGAGTCCTGA+TGG | - | chr4.2:23343989-23344008 | MS.gene39558:intron | 60.0% | |
| TGGGAGTCCTGATGGTACCC+AGG | - | chr4.2:23343997-23344016 | MS.gene39558:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 23343558 | 23346194 | 23343558 | ID=MS.gene39558 |
| chr4.2 | mRNA | 23343558 | 23346194 | 23343558 | ID=MS.gene39558.t1;Parent=MS.gene39558 |
| chr4.2 | exon | 23346085 | 23346194 | 23346085 | ID=MS.gene39558.t1.exon1;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23346085 | 23346194 | 23346085 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23345689 | 23345788 | 23345689 | ID=MS.gene39558.t1.exon2;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23345689 | 23345788 | 23345689 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23345519 | 23345552 | 23345519 | ID=MS.gene39558.t1.exon3;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23345519 | 23345552 | 23345519 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23345292 | 23345368 | 23345292 | ID=MS.gene39558.t1.exon4;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23345292 | 23345368 | 23345292 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23345117 | 23345142 | 23345117 | ID=MS.gene39558.t1.exon5;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23345117 | 23345142 | 23345117 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23344874 | 23345038 | 23344874 | ID=MS.gene39558.t1.exon6;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23344874 | 23345038 | 23344874 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23344658 | 23344772 | 23344658 | ID=MS.gene39558.t1.exon7;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23344658 | 23344772 | 23344658 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| chr4.2 | exon | 23343558 | 23343662 | 23343558 | ID=MS.gene39558.t1.exon8;Parent=MS.gene39558.t1 |
| chr4.2 | CDS | 23343558 | 23343662 | 23343558 | ID=cds.MS.gene39558.t1;Parent=MS.gene39558.t1 |
| Gene Sequence |
| Protein sequence |
