AlfalfaGEDB | MS.gene39808

M. sativa cultivar XinJiangDaYe / MS.gene39808

KEGG: K18532
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005524 GO:0008144 GO:0016301 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0019205 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0050145 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF13238.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39808.t1	XP_024638986.1	97.7	177	4	0	1	177	1	177	2.40E-94	354.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39808.t1	Q9FJI1	67.1	167	55	0	7	173	10	176	1.1e-63	244.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39808.t1	G7K2Z5	97.7	177	4	0	1	177	1	177	1.7e-94	354.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene39808	0.826514	2.60E-54	-1.69E-46
MS.gene050303	MS.gene39808	0.816817	4.55E-52	-1.69E-46
MS.gene055512	MS.gene39808	0.811427	7.04E-51	-1.69E-46
MS.gene055555	MS.gene39808	0.800452	1.43E-48	-1.69E-46
MS.gene057705	MS.gene39808	0.836875	7.24E-57	-1.69E-46
MS.gene05954	MS.gene39808	0.81069	1.02E-50	-1.69E-46
MS.gene05978	MS.gene39808	0.806838	6.77E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39808.t1	MTR_5g087910	97.740	177	4	0	1	177	1	177	2.16e-127	355
MS.gene39808.t1	MTR_5g087910	97.740	177	4	0	1	177	73	249	3.23e-126	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39808.t1	AT5G60340	67.066	167	55	0	7	173	10	176	2.94e-83	243

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Find 38 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCCTATACTGGGAT+GGG	0.545741	5.4:-69193667	None:intergenic
AAAGAGAAGAACTTGCATGA+TGG	0.601786	5.4:+69192865	MS.gene39808:CDS
AATTGGCCCATCCCAGTATA+GGG	0.447984	5.4:+69193661	MS.gene39808:CDS
ACACAATCAAACCATCGCTC+GGG	0.566646	5.4:-69193325	None:intergenic
ACTTGAGGATGTTATGGAAG+AGG	0.497760	5.4:+69193264	MS.gene39808:CDS
AGAAGAACTTGCATGATGGC+TGG	0.459493	5.4:+69192869	MS.gene39808:CDS
AGGATGTTATGGAAGAGGGA+GGG	0.612954	5.4:+69193269	MS.gene39808:CDS
ATGTTGCAACTCTGACAGAT+TGG	0.522799	5.4:+69193632	MS.gene39808:CDS
ATTGATGTGGTTGAGCTGAG+TGG	0.681056	5.4:-69192827	None:intergenic
CAACTCTGACAGATTGGATC+AGG	0.470384	5.4:+69193638	MS.gene39808:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGCATACTATTTACTGAA+TGG	+	chr5.4:69193143-69193162	MS.gene39808:intron	30.0%
AAAGAGAAGAACTTGCATGA+TGG	+	chr5.4:69192865-69192884	MS.gene39808:CDS	35.0%
ACAGGAGTAACATGACTATT+GGG	-	chr5.4:69193049-69193068	None:intergenic	35.0%
ACGGTCTCCAGTATATAAAT+TGG	-	chr5.4:69192942-69192961	None:intergenic	35.0%
ATAACAGTGAAATGAGGGAA+TGG	-	chr5.4:69193102-69193121	None:intergenic	35.0%
CCAAATCTCCAATATTGATG+TGG	-	chr5.4:69192843-69192862	None:intergenic	35.0%
CCACATCAATATTGGAGATT+TGG	+	chr5.4:69192840-69192859	MS.gene39808:CDS	35.0%
GCAAAAGGACTAAACATTAC+AGG	-	chr5.4:69193067-69193086	None:intergenic	35.0%
TACAGGAGTAACATGACTAT+TGG	-	chr5.4:69193050-69193069	None:intergenic	35.0%
TGAAAGACAGTATCAAGAGA+AGG	+	chr5.4:69192734-69192753	MS.gene39808:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	69192730	69193681	69192730	ID=MS.gene39808
chr5.4	mRNA	69192730	69193681	69192730	ID=MS.gene39808.t1;Parent=MS.gene39808
chr5.4	exon	69192730	69192930	69192730	ID=MS.gene39808.t1.exon1;Parent=MS.gene39808.t1
chr5.4	CDS	69192730	69192930	69192730	ID=cds.MS.gene39808.t1;Parent=MS.gene39808.t1
chr5.4	exon	69193253	69193398	69193253	ID=MS.gene39808.t1.exon2;Parent=MS.gene39808.t1
chr5.4	CDS	69193253	69193398	69193253	ID=cds.MS.gene39808.t1;Parent=MS.gene39808.t1
chr5.4	exon	69193495	69193681	69193495	ID=MS.gene39808.t1.exon3;Parent=MS.gene39808.t1
chr5.4	CDS	69193495	69193681	69193495	ID=cds.MS.gene39808.t1;Parent=MS.gene39808.t1

Gene Sequence

>MS.gene39808

ATGGTGAAAGACAGTATCAAGAGAAGGAAACCAAACATTTTGGTGACTGGTACACCAGGGACAGGAAAGACAACCACGTCAACTGCTCTAGCTGAAGCCACTCAGCTCAACCACATCAATATTGGAGATTTGGTCAAAGAGAAGAACTTGCATGATGGCTGGGATGATGAGCTTGATTCTTACATTCTTAATGAAGATTTGGTAAGCTACCAATTTATATACTGGAGACCGTTCTTGTATTGTTTTGTTTGGTGTTGTTAGCGATGCATTAGGTATATAAGAATTTAAGTTCAAATTGTTAGCACATCCACTAGCCCCCAATAGTCATGTTACTCCTGTAATGTTTAGTCCTTTTGCATCCATCCTTAACCATTCCCTCATTTCACTGTTATTGATAATGACTCTTCAATATTTTGGCATACTATTTACTGAATGGTGAACTTTCAGTTGTACCGTTGTGATAAAAGACCATTTGTTAATCTTTATATATTAGGTTTATGTGTATATCTTTTGGTTTTTGTAGGTGTGTGATGAACTTGAGGATGTTATGGAAGAGGGAGGGAATATTGTGGACTATCATGGCTGTGATTTCTTTCCCGAGCGATGGTTTGATTGTGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTCTGAGCAGAAGGTATGTCAGCACTTTTTGCTGTTGTTGAATGTTGATTTTGCAATTCTATTGTATATTTCAGGCTTTCAGCATTAACTTTCTTCATCTCTGTGACAGAGGGTACAAAGATTCAAAGCTTTCCAACAACGTCGAATGTGAAATCTTTCAAGTTTTGCTTGAGGAGGCTAAAGAAAGTTACGCGGAGGACAAAGTTGTTGCATTGAAAAGCGATACTATTGAAGACATTAGTAGAAATGTTGCAACTCTGACAGATTGGATCAGGAATTGGCCCATCCCAGTATAG

Protein sequence

>MS.gene39808.t1

MVKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDSKLSNNVECEIFQVLLEEAKESYAEDKVVALKSDTIEDISRNVATLTDWIRNWPIPV