Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40003.t1 | XP_003590676.1 | 93.5 | 325 | 21 | 0 | 1 | 325 | 1 | 325 | 1.10E-169 | 605.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40003.t1 | Q8S3D5 | 36.2 | 130 | 81 | 1 | 190 | 317 | 136 | 265 | 8.6e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40003.t1 | G7IEF8 | 93.5 | 325 | 21 | 0 | 1 | 325 | 1 | 325 | 7.9e-170 | 605.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40003.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050438 | MS.gene40003 | 0.808568 | 2.91E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene40003 | 0.816406 | 5.62E-52 | -1.69E-46 |
| MS.gene050808 | MS.gene40003 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene40003 | 0.801481 | 8.82E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene40003 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene40003 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene40003 | 0.813092 | 3.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40003.t1 | MTR_1g072530 | 93.538 | 325 | 21 | 0 | 1 | 325 | 1 | 325 | 0.0 | 634 |
| MS.gene40003.t1 | MTR_1g072530 | 92.739 | 303 | 22 | 0 | 1 | 303 | 1 | 303 | 0.0 | 588 |
| MS.gene40003.t1 | MTR_4g131160 | 33.735 | 166 | 81 | 4 | 181 | 317 | 184 | 349 | 8.72e-18 | 83.6 |
| MS.gene40003.t1 | MTR_4g131160 | 33.735 | 166 | 81 | 4 | 181 | 317 | 187 | 352 | 9.40e-18 | 83.6 |
| MS.gene40003.t1 | MTR_1g080890 | 33.577 | 137 | 79 | 1 | 190 | 314 | 199 | 335 | 1.44e-15 | 77.0 |
| MS.gene40003.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 213 | 317 | 149 | 265 | 1.50e-11 | 64.3 |
| MS.gene40003.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 213 | 317 | 152 | 268 | 1.61e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40003.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 191 | 311 | 218 | 340 | 1.85e-22 | 96.7 |
| MS.gene40003.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 191 | 311 | 218 | 340 | 1.85e-22 | 96.7 |
| MS.gene40003.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 170 | 317 | 23 | 181 | 3.17e-18 | 82.8 |
| MS.gene40003.t1 | AT4G30980 | 36.154 | 130 | 81 | 1 | 190 | 317 | 136 | 265 | 3.38e-18 | 84.0 |
| MS.gene40003.t1 | AT4G30980 | 34.000 | 150 | 94 | 2 | 170 | 317 | 167 | 313 | 6.29e-18 | 84.0 |
| MS.gene40003.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 170 | 317 | 126 | 284 | 1.21e-17 | 82.8 |
| MS.gene40003.t1 | AT5G58010 | 33.108 | 148 | 75 | 4 | 190 | 315 | 105 | 250 | 2.00e-14 | 73.2 |
| MS.gene40003.t1 | AT1G03040 | 28.934 | 197 | 120 | 4 | 133 | 311 | 79 | 273 | 3.89e-13 | 69.3 |
| MS.gene40003.t1 | AT1G03040 | 29.851 | 201 | 116 | 5 | 134 | 311 | 80 | 278 | 4.18e-13 | 69.3 |
| MS.gene40003.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 112 | 224 | 1.73e-11 | 63.9 |
| MS.gene40003.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 175 | 287 | 1.96e-11 | 64.3 |
| MS.gene40003.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 213 | 311 | 175 | 287 | 1.96e-11 | 64.3 |
Find 53 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGCTGCCTCCTGATTT+TGG | 0.146986 | 1.4:-59391171 | None:intergenic |
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1.4:+59390219 | MS.gene40003:CDS |
| GATTCTTCAAGTCATGATTT+TGG | 0.211671 | 1.4:+59390255 | MS.gene40003:CDS |
| TGCTTCACAATTTGATCATA+TGG | 0.268319 | 1.4:+59391116 | MS.gene40003:CDS |
| ATGATTTATTCACAGGGTTA+TGG | 0.279023 | 1.4:+59392655 | MS.gene40003:intron |
| TTACTTCCAAATCCAAAATC+AGG | 0.321359 | 1.4:+59391159 | MS.gene40003:CDS |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1.4:+59392705 | MS.gene40003:CDS |
| TGATTTATTCACAGGGTTAT+GGG | 0.337574 | 1.4:+59392656 | MS.gene40003:intron |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1.4:+59392786 | MS.gene40003:CDS |
| TGCTTATCTCCAACTGAATC+AGG | 0.357388 | 1.4:-59391090 | None:intergenic |
| TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1.4:-59390135 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1.4:+59392706 | MS.gene40003:CDS |
| TACTACCAAGAGTGTGATAA+TGG | 0.397730 | 1.4:-59390179 | None:intergenic |
| ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1.4:+59390150 | MS.gene40003:CDS |
| TTTGGATTTGGAAGTAAAGA+AGG | 0.414312 | 1.4:-59391153 | None:intergenic |
| AAACAACAGATTACCACATC+TGG | 0.423786 | 1.4:-59391461 | None:intergenic |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1.4:-59392822 | None:intergenic |
| GCTTCACAATTTGATCATAT+GGG | 0.439933 | 1.4:+59391117 | MS.gene40003:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1.4:+59392669 | MS.gene40003:intron |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1.4:-59392796 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1.4:-59391430 | None:intergenic |
| TCCCACTTCTTCCAAAGTGT+TGG | 0.449123 | 1.4:-59390038 | None:intergenic |
| ATTAACTAACCTCAGTATAG+TGG | 0.456570 | 1.4:-59390475 | None:intergenic |
| GAAGCTCATATATTTGAAAC+CGG | 0.467992 | 1.4:+59390437 | MS.gene40003:CDS |
| AAATAGTTAGCTAGCTAGCT+TGG | 0.473472 | 1.4:-59392843 | None:intergenic |
| CAAATTCAAAACCAACACTT+TGG | 0.479840 | 1.4:+59390027 | MS.gene40003:CDS |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1.4:+59391620 | MS.gene40003:intron |
| AACCAACACTTTGGAAGAAG+TGG | 0.489754 | 1.4:+59390036 | MS.gene40003:CDS |
| CAACTGAGTATAATATGATT+GGG | 0.500571 | 1.4:+59390151 | MS.gene40003:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1.4:+59390204 | MS.gene40003:CDS |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1.4:-59392709 | None:intergenic |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1.4:+59389973 | MS.gene40003:CDS |
| AATAGCCATTATCACACTCT+TGG | 0.527667 | 1.4:+59390174 | MS.gene40003:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1.4:-59390005 | None:intergenic |
| TTGGAGAAATGATGAAGGAG+AGG | 0.544579 | 1.4:+59390412 | MS.gene40003:CDS |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.552010 | 1.4:+59391824 | MS.gene40003:intron |
| TTGGAAGAAGTGGGATAGAG+TGG | 0.574092 | 1.4:+59390046 | MS.gene40003:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1.4:+59391665 | MS.gene40003:CDS |
| CTCTTTGAATACAGCAACGC+AGG | 0.587080 | 1.4:+59391390 | MS.gene40003:intron |
| ACATGGACACCTGATTCAGT+TGG | 0.593145 | 1.4:+59391081 | MS.gene40003:CDS |
| TGTAATAGGGTCATGCAACA+TGG | 0.593241 | 1.4:+59391064 | MS.gene40003:intron |
| GTAGTGAATAAAATAATGGA+AGG | 0.599004 | 1.4:+59389919 | None:intergenic |
| ACCAACACTTTGGAAGAAGT+GGG | 0.607841 | 1.4:+59390037 | MS.gene40003:CDS |
| AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1.4:-59390121 | None:intergenic |
| CTTCCAAATCCAAAATCAGG+AGG | 0.618532 | 1.4:+59391162 | MS.gene40003:CDS |
| AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1.4:+59389999 | MS.gene40003:CDS |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1.4:+59392707 | MS.gene40003:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1.4:-59391878 | None:intergenic |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1.4:+59392815 | MS.gene40003:CDS |
| CAGATTACCACATCTGGAGT+CGG | 0.663959 | 1.4:-59391455 | None:intergenic |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1.4:+59392760 | MS.gene40003:CDS |
| TCAAAATCTCCACTATACTG+AGG | 0.696504 | 1.4:+59390466 | MS.gene40003:CDS |
| ATTGCTGCCGACTCCAGATG+TGG | 0.727085 | 1.4:+59391448 | MS.gene40003:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCCTAATTTTTTTTTTAA+TGG | + | chr1.4:59391697-59391716 | MS.gene40003:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTAATA+GGG | + | chr1.4:59391051-59391070 | MS.gene40003:intron | 10.0% |
| !!! | TATTGTAATAATTTTGTAAT+AGG | + | chr1.4:59391050-59391069 | MS.gene40003:intron | 10.0% |
| !! | AAAAAAAATTAGGATTGAAA+AGG | - | chr1.4:59391693-59391712 | None:intergenic | 15.0% |
| !! | AAATAAGCTGAAAAAATATA+TGG | + | chr1.4:59390851-59390870 | MS.gene40003:intron | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1.4:59390919-59390938 | MS.gene40003:intron | 15.0% |
| !! | ATTAAAATTCAGTTCATTAA+AGG | - | chr1.4:59391595-59391614 | None:intergenic | 15.0% |
| !! | TAATATATCTACTGAAATTA+AGG | - | chr1.4:59391911-59391930 | None:intergenic | 15.0% |
| !! | TATAAAAACAATTTATGACA+TGG | - | chr1.4:59390945-59390964 | None:intergenic | 15.0% |
| !! | TTGCCATTAAAAAAAAAATT+AGG | - | chr1.4:59391703-59391722 | None:intergenic | 15.0% |
| !!! | ATTCTGAAATTTATGATTAA+TGG | + | chr1.4:59390574-59390593 | MS.gene40003:intron | 15.0% |
| !!! | TAGAAAAAATTTTACTTACA+CGG | - | chr1.4:59391230-59391249 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTCTTCTTTATC+CGG | + | chr1.4:59391746-59391765 | MS.gene40003:intron | 15.0% |
| !!! | TGTTTTCATAAGTTATATTA+TGG | + | chr1.4:59390680-59390699 | MS.gene40003:intron | 15.0% |
| !!! | TTTATCCATTTATCAATTTT+AGG | + | chr1.4:59392460-59392479 | MS.gene40003:intron | 15.0% |
| !!! | TTTCTATTATTTTAAGCTTA+AGG | - | chr1.4:59392095-59392114 | None:intergenic | 15.0% |
| !! | TATCTCTGATAAAATCATAA+GGG | + | chr1.4:59391248-59391267 | MS.gene40003:intron | 20.0% |
| !! | TCAATTAAAATTGATGTTCT+TGG | - | chr1.4:59392387-59392406 | None:intergenic | 20.0% |
| !!! | ATATATGTGCTACTTAAATT+TGG | - | chr1.4:59391552-59391571 | None:intergenic | 20.0% |
| !!! | ATTTAAGTAGCTAGTTTTTT+TGG | + | chr1.4:59391524-59391543 | MS.gene40003:intron | 20.0% |
| !!! | ATTTTTTTTCTTCTTTATCC+GGG | + | chr1.4:59391747-59391766 | MS.gene40003:intron | 20.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1.4:59390090-59390109 | None:intergenic | 20.0% |
| !!! | TGTTTTTTAGTAACAAAGTT+CGG | - | chr1.4:59392524-59392543 | None:intergenic | 20.0% |
| !!! | TTTAAGTAGCTAGTTTTTTT+GGG | + | chr1.4:59391525-59391544 | MS.gene40003:intron | 20.0% |
| !!! | TTTGTTATGATTTATTCACA+GGG | + | chr1.4:59392649-59392668 | MS.gene40003:intron | 20.0% |
| ! | AATAAGCTGTAAAAAACTGA+TGG | + | chr1.4:59390784-59390803 | MS.gene40003:intron | 25.0% |
| ! | ACAACTGAGTATAATATGAT+TGG | + | chr1.4:59390150-59390169 | MS.gene40003:CDS | 25.0% |
| ! | AGAATTGATTGTGAAATGAA+AGG | - | chr1.4:59392430-59392449 | None:intergenic | 25.0% |
| ! | CAACTGAGTATAATATGATT+GGG | + | chr1.4:59390151-59390170 | MS.gene40003:CDS | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1.4:59389973-59389992 | MS.gene40003:CDS | 25.0% |
| ! | CTATCTCTGATAAAATCATA+AGG | + | chr1.4:59391247-59391266 | MS.gene40003:intron | 25.0% |
| ! | TACTCAAGAAATTATTTGCA+TGG | - | chr1.4:59391978-59391997 | None:intergenic | 25.0% |
| ! | TGGTTCCTAAAATTGATAAA+TGG | - | chr1.4:59392468-59392487 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTAGATGCAA+CGG | - | chr1.4:59392061-59392080 | None:intergenic | 25.0% |
| !!! | ATGTTTTGTTTGTTTATGTG+AGG | + | chr1.4:59390338-59390357 | MS.gene40003:intron | 25.0% |
| !!! | GAACTGAATTTTAATTTGCA+GGG | + | chr1.4:59391600-59391619 | MS.gene40003:intron | 25.0% |
| !!! | GTTTGTTATGATTTATTCAC+AGG | + | chr1.4:59392648-59392667 | MS.gene40003:intron | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1.4:59390081-59390100 | None:intergenic | 25.0% |
| !!! | TATTTCCTCATGTGTTATTT+TGG | - | chr1.4:59392145-59392164 | None:intergenic | 25.0% |
| !!! | TGAACTGAATTTTAATTTGC+AGG | + | chr1.4:59391599-59391618 | MS.gene40003:intron | 25.0% |
| AAGAAATTATTTGCATGGAG+CGG | - | chr1.4:59391973-59391992 | None:intergenic | 30.0% | |
| AATCTATCTTGAAGAGCTTA+TGG | + | chr1.4:59390760-59390779 | MS.gene40003:intron | 30.0% | |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1.4:59390282-59390301 | MS.gene40003:intron | 30.0% | |
| ATGATCCAAAATAACACATG+AGG | + | chr1.4:59392137-59392156 | MS.gene40003:intron | 30.0% | |
| ATGATTTATTCACAGGGTTA+TGG | + | chr1.4:59392655-59392674 | MS.gene40003:intron | 30.0% | |
| ATTAACTAACCTCAGTATAG+TGG | - | chr1.4:59390478-59390497 | None:intergenic | 30.0% | |
| CAAATTCAAAACCAACACTT+TGG | + | chr1.4:59390027-59390046 | MS.gene40003:CDS | 30.0% | |
| GCTTCACAATTTGATCATAT+GGG | + | chr1.4:59391117-59391136 | MS.gene40003:CDS | 30.0% | |
| TACACTTGGCATAACATAAT+TGG | + | chr1.4:59392163-59392182 | MS.gene40003:intron | 30.0% | |
| TATGCAAACGTGAAACTATT+TGG | - | chr1.4:59390975-59390994 | None:intergenic | 30.0% | |
| TCTACAATAGCTAAAGAAAG+TGG | + | chr1.4:59391802-59391821 | MS.gene40003:intron | 30.0% | |
| TGATTTATTCACAGGGTTAT+GGG | + | chr1.4:59392656-59392675 | MS.gene40003:intron | 30.0% | |
| TGCTTCACAATTTGATCATA+TGG | + | chr1.4:59391116-59391135 | MS.gene40003:CDS | 30.0% | |
| TGTGGATAAATAGTGAAATG+AGG | + | chr1.4:59392237-59392256 | MS.gene40003:intron | 30.0% | |
| TTACTTCCAAATCCAAAATC+AGG | + | chr1.4:59391159-59391178 | MS.gene40003:CDS | 30.0% | |
| TTTGGATTTGGAAGTAAAGA+AGG | - | chr1.4:59391156-59391175 | None:intergenic | 30.0% | |
| ! | ATACTGAGGTTAGTTAATTG+AGG | + | chr1.4:59390480-59390499 | MS.gene40003:intron | 30.0% |
| ! | GAAGCTCATATATTTGAAAC+CGG | + | chr1.4:59390437-59390456 | MS.gene40003:CDS | 30.0% |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1.4:59390255-59390274 | MS.gene40003:CDS | 30.0% |
| ! | GTATATCTGCATTTTGAATG+TGG | - | chr1.4:59391274-59391293 | None:intergenic | 30.0% |
| !! | TTGTTATTTGTACAGCTCAT+AGG | + | chr1.4:59392018-59392037 | MS.gene40003:intron | 30.0% |
| !! | TTTCTCACTTTTCTGTTTTG+TGG | - | chr1.4:59391193-59391212 | None:intergenic | 30.0% |
| AAACAACAGATTACCACATC+TGG | - | chr1.4:59391464-59391483 | None:intergenic | 35.0% | |
| AACACATGAGGAAATACACT+TGG | + | chr1.4:59392149-59392168 | MS.gene40003:intron | 35.0% | |
| AATAGCCATTATCACACTCT+TGG | + | chr1.4:59390174-59390193 | MS.gene40003:CDS | 35.0% | |
| AGCAGTGTCAAATTCATTGA+CGG | + | chr1.4:59392621-59392640 | MS.gene40003:intron | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1.4:59392799-59392818 | None:intergenic | 35.0% | |
| ATAAGCTCGTGAAGAGTTTA+TGG | + | chr1.4:59390895-59390914 | MS.gene40003:intron | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1.4:59391665-59391684 | MS.gene40003:CDS | 35.0% | |
| CACTATTTATCCACAACTCT+AGG | - | chr1.4:59392232-59392251 | None:intergenic | 35.0% | |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1.4:59391433-59391452 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1.4:59392669-59392688 | MS.gene40003:intron | 35.0% | |
| GTGAAATGAGGATCAATAGT+AGG | + | chr1.4:59392249-59392268 | MS.gene40003:intron | 35.0% | |
| TCAAAATCTCCACTATACTG+AGG | + | chr1.4:59390466-59390485 | MS.gene40003:CDS | 35.0% | |
| TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1.4:59390138-59390157 | None:intergenic | 35.0% | |
| TGGCATAACATAATTGGTTG+AGG | + | chr1.4:59392169-59392188 | MS.gene40003:intron | 35.0% | |
| TGGTTGAGGTAAATAACACT+TGG | + | chr1.4:59392183-59392202 | MS.gene40003:intron | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1.4:59392760-59392779 | MS.gene40003:CDS | 35.0% | |
| TTATGTTAGAACAACAAGCC+CGG | - | chr1.4:59392593-59392612 | None:intergenic | 35.0% | |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1.4:59390225-59390244 | None:intergenic | 35.0% |
| ! | GTATCGTAACTCTTTTGAAC+CGG | + | chr1.4:59392571-59392590 | MS.gene40003:intron | 35.0% |
| ! | TACTACCAAGAGTGTGATAA+TGG | - | chr1.4:59390182-59390201 | None:intergenic | 35.0% |
| ! | TATCGTAACTCTTTTGAACC+GGG | + | chr1.4:59392572-59392591 | MS.gene40003:intron | 35.0% |
| ! | TATTCAAAGAGTACACGGTA+TGG | - | chr1.4:59391381-59391400 | None:intergenic | 35.0% |
| ! | TGCTGTATTCAAAGAGTACA+CGG | - | chr1.4:59391386-59391405 | None:intergenic | 35.0% |
| ! | TTTTGGATCATAACACAGAG+TGG | - | chr1.4:59392128-59392147 | None:intergenic | 35.0% |
| !!! | CAAGTCATGATTTTGGTGTT+AGG | + | chr1.4:59390262-59390281 | MS.gene40003:CDS | 35.0% |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1.4:59391874-59391893 | MS.gene40003:CDS | 35.0% |
| !!! | TCATGATTTTGGTGTTAGGA+AGG | + | chr1.4:59390266-59390285 | MS.gene40003:CDS | 35.0% |
| !!! | TGTTTTGTTTTCAGCGTGTA+GGG | + | chr1.4:59390387-59390406 | MS.gene40003:intron | 35.0% |
| AAAGAAAGTGGTTCCTTTGC+AGG | + | chr1.4:59391814-59391833 | MS.gene40003:intron | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1.4:59392815-59392834 | MS.gene40003:CDS | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1.4:59391892-59391911 | None:intergenic | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1.4:59392707-59392726 | MS.gene40003:CDS | 40.0% | |
| AGTGTTTGGAAGATAGCATG+AGG | - | chr1.4:59390124-59390143 | None:intergenic | 40.0% | |
| CATCTAACTGCAGAGTGTAA+TGG | - | chr1.4:59392488-59392507 | None:intergenic | 40.0% | |
| CTTCCAAATCCAAAATCAGG+AGG | + | chr1.4:59391162-59391181 | MS.gene40003:CDS | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1.4:59392706-59392725 | MS.gene40003:CDS | 40.0% | |
| GAGCTCTCTTCAAGAGTTTA+TGG | + | chr1.4:59390828-59390847 | MS.gene40003:intron | 40.0% | |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1.4:59390008-59390027 | None:intergenic | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1.4:59391620-59391639 | MS.gene40003:intron | 40.0% | |
| TACACTCTGCAGTTAGATGT+AGG | + | chr1.4:59392489-59392508 | MS.gene40003:intron | 40.0% | |
| TATTTGCATGGAGCGGAATT+TGG | - | chr1.4:59391966-59391985 | None:intergenic | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1.4:59392705-59392724 | MS.gene40003:CDS | 40.0% | |
| TGCTTATCTCCAACTGAATC+AGG | - | chr1.4:59391093-59391112 | None:intergenic | 40.0% | |
| TGTAATAGGGTCATGCAACA+TGG | + | chr1.4:59391064-59391083 | MS.gene40003:intron | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1.4:59391881-59391900 | None:intergenic | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1.4:59392712-59392731 | None:intergenic | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1.4:59391768-59391787 | None:intergenic | 40.0% | |
| TTGGAGAAATGATGAAGGAG+AGG | + | chr1.4:59390412-59390431 | MS.gene40003:CDS | 40.0% | |
| ! | AACCAACACTTTGGAAGAAG+TGG | + | chr1.4:59390036-59390055 | MS.gene40003:CDS | 40.0% |
| ! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1.4:59389999-59390018 | MS.gene40003:CDS | 40.0% |
| ! | ACCAACACTTTGGAAGAAGT+GGG | + | chr1.4:59390037-59390056 | MS.gene40003:CDS | 40.0% |
| !! | ACTCTACTAGAGAGTACCAA+AGG | - | chr1.4:59392308-59392327 | None:intergenic | 40.0% |
| !! | ACTCTAGGTTCCTTGGTTTT+AGG | - | chr1.4:59392217-59392236 | None:intergenic | 40.0% |
| !! | CTCTACTAGAGAGTACCAAA+GGG | - | chr1.4:59392307-59392326 | None:intergenic | 40.0% |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1.4:59390219-59390238 | MS.gene40003:CDS | 40.0% |
| !!! | GGGTTTTGGAGAAATGATGA+AGG | + | chr1.4:59390407-59390426 | MS.gene40003:CDS | 40.0% |
| !!! | GTGGAGATTTTGACTACTTC+CGG | - | chr1.4:59390459-59390478 | None:intergenic | 40.0% |
| !!! | GTGTTTTGTTTTCAGCGTGT+AGG | + | chr1.4:59390386-59390405 | MS.gene40003:intron | 40.0% |
| AACCAAGGAACCTAGAGTTG+TGG | + | chr1.4:59392219-59392238 | MS.gene40003:intron | 45.0% | |
| ACATGGACACCTGATTCAGT+TGG | + | chr1.4:59391081-59391100 | MS.gene40003:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1.4:59390204-59390223 | MS.gene40003:CDS | 45.0% | |
| ATCCACAACTCTAGGTTCCT+TGG | - | chr1.4:59392224-59392243 | None:intergenic | 45.0% | |
| CTCTTTGAATACAGCAACGC+AGG | + | chr1.4:59391390-59391409 | MS.gene40003:intron | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1.4:59391830-59391849 | None:intergenic | 45.0% | |
| GGCTAGTGATCCTAAAACCA+AGG | + | chr1.4:59392204-59392223 | MS.gene40003:intron | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1.4:59392825-59392844 | None:intergenic | 45.0% | |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1.4:59391824-59391843 | MS.gene40003:intron | 45.0% | |
| TCCCACTTCTTCCAAAGTGT+TGG | - | chr1.4:59390041-59390060 | None:intergenic | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1.4:59392786-59392805 | MS.gene40003:CDS | 45.0% | |
| TTGGAAGAAGTGGGATAGAG+TGG | + | chr1.4:59390046-59390065 | MS.gene40003:CDS | 45.0% | |
| ! | CAGATTACCACATCTGGAGT+CGG | - | chr1.4:59391458-59391477 | None:intergenic | 45.0% |
| ! | CTGCCTCCTGATTTTGGATT+TGG | - | chr1.4:59391168-59391187 | None:intergenic | 45.0% |
| ! | GTTTTCAGCGTGTAGGGTTT+TGG | + | chr1.4:59390393-59390412 | MS.gene40003:intron | 45.0% |
| !!! | TTTTTTAACTTATTTTAATA+AGG | - | chr1.4:59390709-59390728 | None:intergenic | 5.0% |
| AAGTCTCTCCTCTCTCCCTT+TGG | + | chr1.4:59392289-59392308 | MS.gene40003:intron | 50.0% | |
| !! | AGAGAGTACCAAAGGGAGAG+AGG | - | chr1.4:59392300-59392319 | None:intergenic | 50.0% |
| ! | GTGGAGCTGCCTCCTGATTT+TGG | - | chr1.4:59391174-59391193 | None:intergenic | 55.0% |
| !! | ATTGCTGCCGACTCCAGATG+TGG | + | chr1.4:59391448-59391467 | MS.gene40003:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59389934 | 59392855 | 59389934 | ID=MS.gene40003 |
| chr1.4 | mRNA | 59389934 | 59392855 | 59389934 | ID=MS.gene40003.t1;Parent=MS.gene40003 |
| chr1.4 | exon | 59389934 | 59390287 | 59389934 | ID=MS.gene40003.t1.exon1;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59389934 | 59390287 | 59389934 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59390401 | 59390487 | 59390401 | ID=MS.gene40003.t1.exon2;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59390401 | 59390487 | 59390401 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59391072 | 59391230 | 59391072 | ID=MS.gene40003.t1.exon3;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59391072 | 59391230 | 59391072 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59391404 | 59391469 | 59391404 | ID=MS.gene40003.t1.exon4;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59391404 | 59391469 | 59391404 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59391621 | 59391686 | 59391621 | ID=MS.gene40003.t1.exon5;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59391621 | 59391686 | 59391621 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59391836 | 59391895 | 59391836 | ID=MS.gene40003.t1.exon6;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59391836 | 59391895 | 59391836 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| chr1.4 | exon | 59392670 | 59392855 | 59392670 | ID=MS.gene40003.t1.exon7;Parent=MS.gene40003.t1 |
| chr1.4 | CDS | 59392670 | 59392855 | 59392670 | ID=cds.MS.gene40003.t1;Parent=MS.gene40003.t1 |
| Gene Sequence |
| Protein sequence |
