AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050808


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050808.t1 MTR_7g111260 97.880 283 6 0 1 283 1 283 0.0 566
MS.gene050808.t1 MTR_1g085090 80.919 283 53 1 1 283 1 282 1.53e-170 485
MS.gene050808.t1 MTR_3g100980 49.810 263 124 1 17 271 14 276 5.58e-87 270
MS.gene050808.t1 MTR_4g123537 50.355 282 138 2 3 282 25 306 1.03e-85 268
MS.gene050808.t1 MTR_3g100980 45.017 291 124 2 17 271 14 304 8.61e-81 255
MS.gene050808.t1 MTR_8g087810 40.449 267 151 4 17 275 19 285 2.63e-59 198
MS.gene050808.t1 MTR_2g017750 36.986 292 167 4 3 277 8 299 3.09e-57 193
MS.gene050808.t1 MTR_8g087780 39.552 268 155 3 17 277 19 286 2.96e-55 187
MS.gene050808.t1 MTR_3g112460 35.165 273 169 5 17 282 21 292 4.54e-53 182
MS.gene050808.t1 MTR_3g112470 35.897 273 167 5 17 282 21 292 3.78e-52 179
MS.gene050808.t1 MTR_4g107670 36.777 242 145 3 17 253 22 260 9.70e-49 170
MS.gene050808.t1 MTR_3g112450 33.942 274 173 4 17 282 21 294 1.86e-48 169
MS.gene050808.t1 MTR_4g015080 32.841 271 177 3 17 283 32 301 4.05e-48 168
MS.gene050808.t1 MTR_5g038380 38.462 247 143 3 15 252 18 264 3.90e-46 163
MS.gene050808.t1 MTR_5g055000 35.145 276 167 5 17 283 16 288 1.25e-44 159
MS.gene050808.t1 MTR_7g051880 34.167 240 152 2 17 256 23 256 1.30e-44 158
MS.gene050808.t1 MTR_7g052600 35.000 240 150 2 17 256 23 256 2.81e-44 157
MS.gene050808.t1 MTR_3g462710 31.387 274 178 3 17 283 22 292 5.27e-44 157
MS.gene050808.t1 MTR_8g469310 38.750 240 144 1 17 253 24 263 1.09e-43 156
MS.gene050808.t1 MTR_2g005130 35.317 252 157 3 18 265 39 288 2.22e-43 156
MS.gene050808.t1 MTR_5g012270 32.117 274 178 4 17 282 27 300 3.20e-43 155
MS.gene050808.t1 MTR_7g065080 32.463 268 173 3 21 283 33 297 3.27e-43 155
MS.gene050808.t1 MTR_7g051830 33.473 239 153 2 17 255 23 255 1.84e-42 152
MS.gene050808.t1 MTR_7g098040 31.047 277 179 2 4 271 19 292 1.99e-42 154
MS.gene050808.t1 MTR_3g072300 33.210 271 174 4 19 283 24 293 2.43e-42 153
MS.gene050808.t1 MTR_7g067010 30.000 270 186 1 17 283 22 291 5.61e-42 152
MS.gene050808.t1 MTR_1g042310 29.091 275 190 1 4 273 11 285 6.30e-42 152
MS.gene050808.t1 MTR_1g116930 31.507 292 189 5 1 282 1 291 6.43e-42 152
MS.gene050808.t1 MTR_4g101380 33.696 276 173 5 17 282 25 300 9.26e-42 151
MS.gene050808.t1 MTR_7g098180 29.655 290 188 3 4 280 16 302 1.44e-41 151
MS.gene050808.t1 MTR_7g006540 34.182 275 168 4 19 280 63 337 1.79e-41 151
MS.gene050808.t1 MTR_4g019580 32.707 266 175 3 21 283 38 302 4.57e-41 149
MS.gene050808.t1 MTR_7g098150 30.292 274 179 2 4 268 18 288 8.25e-41 147
MS.gene050808.t1 MTR_7g098200 31.769 277 181 3 4 273 14 289 1.49e-40 148
MS.gene050808.t1 MTR_7g098200 31.769 277 181 3 4 273 14 289 1.54e-40 148
MS.gene050808.t1 MTR_7g098090 30.292 274 179 2 4 268 18 288 3.31e-40 147
MS.gene050808.t1 MTR_1g041835 30.037 273 186 1 4 271 12 284 3.75e-40 147
MS.gene050808.t1 MTR_3g069500 30.827 266 180 2 17 280 33 296 4.45e-40 147
MS.gene050808.t1 MTR_5g012290 30.909 275 181 3 17 282 25 299 7.79e-40 146
MS.gene050808.t1 MTR_7g088820 31.273 275 177 5 17 282 23 294 7.36e-39 143
MS.gene050808.t1 MTR_1g041815 28.938 273 189 1 4 271 12 284 1.95e-38 142
MS.gene050808.t1 MTR_7g088825 31.636 275 176 5 17 282 20 291 4.65e-38 141
MS.gene050808.t1 MTR_1g041875 28.364 275 192 2 4 273 14 288 7.23e-38 140
MS.gene050808.t1 MTR_1g075440 30.072 276 182 3 4 271 13 285 1.46e-37 140
MS.gene050808.t1 MTR_7g098160 28.571 273 183 2 4 267 18 287 1.72e-37 140
MS.gene050808.t1 MTR_7g098230 31.008 258 169 4 23 273 31 286 1.77e-37 140
MS.gene050808.t1 MTR_3g069440 32.046 259 172 2 17 273 31 287 6.57e-37 138
MS.gene050808.t1 MTR_7g098220 29.412 289 189 4 4 280 15 300 1.01e-36 137
MS.gene050808.t1 MTR_1g042310 28.807 243 168 1 36 273 6 248 1.04e-36 137
MS.gene050808.t1 MTR_5g014150 29.352 293 190 4 4 280 21 312 1.28e-36 137
MS.gene050808.t1 MTR_1g041885 31.120 241 161 2 38 273 1 241 1.80e-36 136
MS.gene050808.t1 MTR_1g042310 29.046 241 166 1 38 273 1 241 1.94e-36 136
MS.gene050808.t1 MTR_7g010820 29.520 271 184 3 17 281 24 293 2.57e-35 134
MS.gene050808.t1 MTR_3g069420 29.323 266 181 3 21 282 36 298 7.10e-35 132
MS.gene050808.t1 MTR_7g088790 30.847 295 182 7 1 282 13 298 2.20e-34 131
MS.gene050808.t1 MTR_4g098800 30.034 293 188 5 4 280 13 304 3.66e-34 130
MS.gene050808.t1 MTR_7g098220 29.961 257 165 4 36 280 3 256 4.65e-34 130
MS.gene050808.t1 MTR_4g114340 34.601 263 169 2 17 276 22 284 5.66e-34 130
MS.gene050808.t1 MTR_4g098800 30.034 293 188 5 4 280 78 369 6.62e-34 130
MS.gene050808.t1 MTR_7g088820 32.174 230 150 3 59 282 3 232 1.15e-33 129
MS.gene050808.t1 MTR_4g107510 31.203 266 179 2 3 264 20 285 2.71e-33 128
MS.gene050808.t1 MTR_7g005930 29.242 277 180 5 18 283 34 305 4.80e-33 127
MS.gene050808.t1 MTR_7g065080 32.394 213 136 3 76 283 1 210 3.18e-32 124
MS.gene050808.t1 MTR_4g107610 33.203 256 160 6 18 266 30 281 4.90e-32 124
MS.gene050808.t1 MTR_2g101610 31.597 288 185 6 3 283 11 293 5.55e-32 124
MS.gene050808.t1 MTR_2g101590 31.338 284 183 6 7 283 14 292 2.59e-31 122
MS.gene050808.t1 MTR_7g013270 27.536 276 188 5 18 283 89 362 5.31e-31 122
MS.gene050808.t1 MTR_4g033395 29.368 269 177 4 17 283 30 287 5.50e-30 118
MS.gene050808.t1 MTR_4g107580 28.179 291 192 6 2 282 11 294 6.50e-30 118
MS.gene050808.t1 MTR_4g107530 30.041 243 165 2 22 259 36 278 1.94e-28 114
MS.gene050808.t1 MTR_5g038060 30.315 254 167 4 17 261 29 281 2.46e-28 114
MS.gene050808.t1 MTR_4g033325 31.343 268 171 4 17 282 29 285 2.92e-28 114
MS.gene050808.t1 MTR_1g009200 28.137 263 175 4 17 269 25 283 6.57e-28 112
MS.gene050808.t1 MTR_3g462710 33.333 186 114 3 105 283 1 183 1.01e-27 111
MS.gene050808.t1 MTR_2g101640 28.309 272 189 4 17 283 21 291 1.39e-27 112
MS.gene050808.t1 MTR_4g033315 31.474 251 161 4 17 263 29 272 1.57e-27 111
MS.gene050808.t1 MTR_4g033310 31.474 251 161 4 17 263 29 272 1.57e-27 111
MS.gene050808.t1 MTR_4g033375 29.924 264 174 4 17 276 30 286 1.75e-27 111
MS.gene050808.t1 MTR_8g103233 29.740 269 179 4 1 265 5 267 1.80e-27 111
MS.gene050808.t1 MTR_4g033330 31.984 247 159 3 19 263 31 270 4.45e-27 110
MS.gene050808.t1 MTR_7g088820 32.044 181 117 3 108 282 4 184 2.37e-26 107
MS.gene050808.t1 MTR_0294s0020 29.719 249 166 2 17 263 29 270 3.96e-26 107
MS.gene050808.t1 MTR_7g098200 34.091 176 108 3 105 273 1 175 5.25e-26 107
MS.gene050808.t1 MTR_4g011280 28.514 249 170 6 19 261 32 278 2.81e-25 105
MS.gene050808.t1 MTR_7g064780 26.449 276 192 6 17 282 24 298 5.43e-25 104
MS.gene050808.t1 MTR_1g026740 28.517 263 178 6 4 261 2 259 7.13e-25 104
MS.gene050808.t1 MTR_1g026750 28.014 282 191 7 7 282 6 281 9.81e-25 103
MS.gene050808.t1 MTR_2g101560 30.325 277 186 5 3 274 11 285 2.02e-24 103
MS.gene050808.t1 MTR_5g085850 30.677 251 163 4 17 258 28 276 2.08e-24 102
MS.gene050808.t1 MTR_2g101650 27.711 249 171 4 17 258 22 268 8.19e-24 101
MS.gene050808.t1 MTR_3g014790 26.587 252 170 2 4 255 2 238 1.38e-23 100
MS.gene050808.t1 MTR_1g057460 27.046 281 196 6 4 283 29 301 7.02e-23 98.6
MS.gene050808.t1 MTR_7g064800 25.735 272 194 5 17 281 24 294 5.63e-22 95.9
MS.gene050808.t1 MTR_3g005010 27.237 257 171 5 17 270 28 271 1.49e-21 94.4
MS.gene050808.t1 MTR_8g469480 26.877 253 177 3 22 267 41 292 1.55e-21 94.4
MS.gene050808.t1 MTR_1g026770 28.226 248 164 6 18 258 14 254 4.95e-21 92.8
MS.gene050808.t1 MTR_8g038880 25.532 282 194 3 1 281 1 267 1.76e-20 91.3
MS.gene050808.t1 MTR_4g033325 35.000 160 98 2 125 282 6 161 8.96e-20 89.0
MS.gene050808.t1 MTR_4g033325 35.000 160 98 2 125 282 32 187 9.97e-20 89.0
MS.gene050808.t1 MTR_4g024930 33.523 176 99 2 17 181 34 202 1.02e-19 89.0
MS.gene050808.t1 MTR_0236s0050 28.151 238 162 6 47 283 1 230 3.24e-19 87.4
MS.gene050808.t1 MTR_4g033310 33.129 163 102 2 17 179 29 184 1.87e-18 85.1
MS.gene050808.t1 MTR_4g033385 33.775 151 94 2 135 283 40 186 2.76e-18 84.7
MS.gene050808.t1 MTR_1g057460 27.731 238 163 6 47 283 1 230 3.22e-18 84.7
MS.gene050808.t1 MTR_8g469470 21.918 292 218 3 1 282 14 305 4.12e-18 84.3
MS.gene050808.t1 MTR_5g038190 24.603 252 183 2 18 262 23 274 1.18e-17 83.2
MS.gene050808.t1 MTR_1g009170 32.847 137 89 1 136 269 3 139 1.47e-17 82.0
MS.gene050808.t1 MTR_2g093640 25.681 257 171 7 19 265 21 267 8.41e-17 80.5
MS.gene050808.t1 MTR_2g093160 23.239 284 194 8 2 275 8 277 4.40e-16 78.6
MS.gene050808.t1 MTR_4g124330 33.613 119 58 1 122 240 9 106 3.58e-15 70.9
MS.gene050808.t1 MTR_2g093180 22.878 271 191 7 2 265 8 267 5.20e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050808.t1 AT3G25280 36.538 260 148 4 3 256 4 252 2.31e-51 176
MS.gene050808.t1 AT3G54140 33.210 271 177 2 17 283 22 292 9.44e-50 173
MS.gene050808.t1 AT3G54140 33.210 271 177 2 17 283 22 292 9.44e-50 173
MS.gene050808.t1 AT1G69850 37.354 257 153 2 1 249 1 257 7.91e-48 168
MS.gene050808.t1 AT3G25260 36.014 286 162 9 4 281 2 274 4.97e-47 164
MS.gene050808.t1 AT1G59740 35.055 271 171 2 4 269 26 296 7.37e-47 165
MS.gene050808.t1 AT1G62200 32.364 275 172 3 17 280 50 321 6.25e-46 163
MS.gene050808.t1 AT1G62200 32.364 275 172 3 17 280 50 321 1.02e-45 162
MS.gene050808.t1 AT1G62200 32.364 275 172 3 17 280 64 335 1.35e-45 162
MS.gene050808.t1 AT5G01180 30.597 268 183 1 17 281 23 290 2.61e-45 161
MS.gene050808.t1 AT5G01180 30.597 268 183 1 17 281 23 290 2.61e-45 161
MS.gene050808.t1 AT5G01180 30.597 268 183 1 17 281 23 290 2.61e-45 161
MS.gene050808.t1 AT2G02040 30.996 271 182 2 17 282 39 309 4.39e-44 157
MS.gene050808.t1 AT1G12110 33.935 277 172 5 17 282 25 301 1.23e-43 156
MS.gene050808.t1 AT2G37900 31.481 270 180 3 17 283 36 303 7.28e-43 154
MS.gene050808.t1 AT2G40460 33.333 285 179 5 4 280 9 290 8.73e-43 154
MS.gene050808.t1 AT1G27040 35.772 246 147 2 15 249 17 262 4.26e-41 149
MS.gene050808.t1 AT1G27040 35.772 246 147 2 15 249 13 258 4.38e-41 149
MS.gene050808.t1 AT3G53960 30.597 268 182 2 17 282 35 300 5.17e-41 149
MS.gene050808.t1 AT2G02020 29.368 269 177 2 8 263 20 288 9.34e-41 148
MS.gene050808.t1 AT2G02020 29.368 269 177 2 8 263 20 288 1.12e-40 148
MS.gene050808.t1 AT5G13400 33.213 277 172 4 19 282 64 340 1.18e-39 146
MS.gene050808.t1 AT5G62730 31.716 268 156 3 5 256 30 286 2.37e-39 145
MS.gene050808.t1 AT1G68570 35.789 285 171 5 8 283 12 293 2.88e-39 145
MS.gene050808.t1 AT2G26690 34.572 269 170 3 17 282 22 287 5.59e-39 144
MS.gene050808.t1 AT1G33440 36.296 270 163 3 19 282 38 304 6.64e-39 144
MS.gene050808.t1 AT1G27040 37.273 220 133 1 35 249 11 230 4.51e-38 140
MS.gene050808.t1 AT2G26690 35.798 257 156 4 29 282 4 254 1.05e-37 140
MS.gene050808.t1 AT4G21680 31.599 269 180 2 17 281 26 294 2.87e-37 139
MS.gene050808.t1 AT5G62730 33.475 236 142 2 25 256 3 227 3.28e-37 138
MS.gene050808.t1 AT2G26690 36.515 241 147 3 45 282 5 242 1.25e-36 137
MS.gene050808.t1 AT2G37900 34.722 216 136 3 71 283 11 224 4.19e-36 135
MS.gene050808.t1 AT1G69870 32.727 275 175 3 17 282 49 322 5.21e-36 136
MS.gene050808.t1 AT1G68570 35.521 259 158 4 31 283 8 263 5.32e-36 135
MS.gene050808.t1 AT1G32450 30.072 276 183 4 17 282 35 310 1.26e-34 132
MS.gene050808.t1 AT5G46050 29.032 248 169 3 20 262 28 273 3.67e-33 127
MS.gene050808.t1 AT5G46040 27.344 256 181 2 17 267 25 280 3.69e-33 127
MS.gene050808.t1 AT1G72140 30.894 246 162 1 17 254 32 277 6.07e-33 127
MS.gene050808.t1 AT5G28470 31.734 271 178 4 17 282 15 283 3.00e-32 125
MS.gene050808.t1 AT5G28470 31.734 271 178 4 17 282 15 283 3.11e-32 125
MS.gene050808.t1 AT1G52190 28.929 280 190 5 5 275 6 285 2.89e-31 122
MS.gene050808.t1 AT1G27080 33.449 287 174 5 7 282 4 284 1.39e-30 120
MS.gene050808.t1 AT1G22570 30.597 268 178 2 17 276 28 295 2.73e-30 119
MS.gene050808.t1 AT5G19640 27.778 270 184 5 20 282 60 325 5.25e-29 116
MS.gene050808.t1 AT1G22540 31.579 266 166 4 3 256 8 269 8.37e-29 115
MS.gene050808.t1 AT3G16180 27.612 268 185 4 3 262 6 272 8.59e-29 115
MS.gene050808.t1 AT1G72125 32.453 265 165 6 21 277 31 289 9.41e-29 115
MS.gene050808.t1 AT1G18880 28.975 283 187 6 6 282 12 286 2.87e-28 114
MS.gene050808.t1 AT3G54450 28.685 251 166 3 17 266 10 248 5.66e-28 113
MS.gene050808.t1 AT1G72120 30.738 244 162 2 17 256 27 267 4.93e-27 110
MS.gene050808.t1 AT1G22570 31.799 239 155 2 46 276 20 258 5.16e-27 110
MS.gene050808.t1 AT3G45690 25.773 291 194 8 1 281 1 279 5.19e-26 107
MS.gene050808.t1 AT1G72130 27.863 262 175 4 17 270 23 278 6.76e-26 107
MS.gene050808.t1 AT5G62680 30.037 273 173 7 22 282 46 312 7.37e-26 107
MS.gene050808.t1 AT3G21670 30.980 255 168 3 17 264 27 280 9.66e-26 106
MS.gene050808.t1 AT1G27080 33.740 246 148 4 48 282 1 242 3.99e-25 104
MS.gene050808.t1 AT3G47960 29.771 262 167 5 1 255 49 300 1.14e-24 103
MS.gene050808.t1 AT1G69860 26.552 290 199 5 3 282 2 287 3.32e-24 102
MS.gene050808.t1 AT3G45680 29.412 272 166 10 19 280 20 275 4.33e-24 102
MS.gene050808.t1 AT1G22550 28.627 255 173 3 17 262 28 282 1.51e-23 100
MS.gene050808.t1 AT3G45660 25.806 279 186 6 5 273 7 274 3.28e-23 99.4
MS.gene050808.t1 AT3G45660 25.806 279 186 6 5 273 7 274 3.28e-23 99.4
MS.gene050808.t1 AT3G45660 25.806 279 186 6 5 273 28 295 3.46e-23 99.4
MS.gene050808.t1 AT5G46050 36.170 141 85 2 122 262 26 161 1.20e-21 94.4
MS.gene050808.t1 AT3G45710 24.638 276 189 7 1 266 1 267 2.32e-20 91.3
MS.gene050808.t1 AT3G45650 26.641 259 175 6 17 268 20 270 6.65e-20 89.7
MS.gene050808.t1 AT3G45650 26.641 259 175 6 17 268 20 270 6.68e-20 89.7
MS.gene050808.t1 AT3G45700 25.969 258 170 8 19 266 16 262 3.84e-18 84.7
MS.gene050808.t1 AT3G45720 26.119 268 171 10 19 276 19 269 5.04e-18 84.3
MS.gene050808.t1 AT5G14940 27.481 262 166 6 17 262 5 258 2.64e-17 82.0
MS.gene050808.t1 AT5G11570 27.556 225 146 7 20 234 14 231 2.50e-14 73.2
MS.gene050808.t1 AT1G72130 30.556 144 92 2 135 270 17 160 2.79e-14 72.8
MS.gene050808.t1 AT1G72130 30.556 144 92 2 135 270 17 160 2.79e-14 72.8
MS.gene050808.t1 AT3G01350 26.214 206 132 3 17 210 5 202 4.70e-13 69.3

Find 56 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCTTGCTTTCCCTTGT+TGG 0.265399 7.1:+4185681 MS.gene050808:CDS
ATAACTATAGCTTCTTCTAT+TGG 0.302689 7.1:+4186228 MS.gene050808:CDS
CTTGATTTCCCACATGCATT+TGG 0.310576 7.1:-4185952 None:intergenic
CAGGTGTTACTGGTGTTGTT+TGG 0.320066 7.1:+4186166 MS.gene050808:CDS
AGAGAAAGAAAGGTGGATTC+AGG 0.324478 7.1:+4185422 MS.gene050808:CDS
TCAACACTTGGAGCAATTAC+AGG 0.328425 7.1:+4186147 MS.gene050808:CDS
ACTCTGGCAGTGACAGCTTT+CGG 0.358181 7.1:-4186665 None:intergenic
GGAGCAATTACAGGTGTTAC+TGG 0.364098 7.1:+4186156 MS.gene050808:CDS
GTTGTCAGCATTGGACAATA+TGG 0.372340 7.1:+4185557 MS.gene050808:CDS
AGGTGTTACTGGTGTTGTTT+GGG 0.383327 7.1:+4186167 MS.gene050808:CDS
CAATACTCTCACAAACTTCA+TGG 0.386414 7.1:+4185653 MS.gene050808:CDS
ACATTGTTGGCATTGGGAAT+AGG 0.397725 7.1:+4186018 MS.gene050808:CDS
GGCTTTGTCACACTTGCTCT+TGG 0.401789 7.1:+4186249 MS.gene050808:CDS
TACACAAAGAGCTTGGCATT+GGG 0.407882 7.1:+4186194 MS.gene050808:CDS
ATCACTGACATTGTTGGCAT+TGG 0.413030 7.1:+4186011 MS.gene050808:CDS
AGTTGTGTGAAAGGTGGAAT+AGG 0.413397 7.1:+4185973 MS.gene050808:CDS
TTCTTGCTTTCCCTTGTTGG+TGG 0.429198 7.1:+4185684 MS.gene050808:CDS
AGAGGATCTATGACTGCATT+TGG 0.431468 7.1:+4186048 MS.gene050808:CDS
AACTCAAGCTTCTCACTGAA+TGG 0.442712 7.1:+4185398 MS.gene050808:CDS
CTGATTGTGGGGCTATCTGC+TGG 0.445119 7.1:-4186297 None:intergenic
TTACACATCACTGACATTGT+TGG 0.446683 7.1:+4186005 MS.gene050808:CDS
TCACTGACATTGTTGGCATT+GGG 0.450521 7.1:+4186012 MS.gene050808:CDS
ACCTGAGCAATTCTGATTGT+GGG 0.454685 7.1:-4186309 None:intergenic
ATTGGACAATATGGGATTTG+TGG 0.458958 7.1:+4185566 MS.gene050808:CDS
TTGTCAGCATTGGACAATAT+GGG 0.463205 7.1:+4185558 MS.gene050808:CDS
CATGAAGTTTGTGAGAGTAT+TGG 0.463423 7.1:-4185652 None:intergenic
GTACACAAAGAGCTTGGCAT+TGG 0.480459 7.1:+4186193 MS.gene050808:CDS
TATAGTTCTTCGTGTGACTC+TGG 0.493826 7.1:-4186681 None:intergenic
GTGAGAGTATTGGCAGAACT+TGG 0.496595 7.1:-4185642 None:intergenic
TGATGTAGTGTTGTCAGCAT+TGG 0.504753 7.1:+4185548 MS.gene050808:intron
CCCCACAATCAGAATTGCTC+AGG 0.505394 7.1:+4186308 MS.gene050808:CDS
ACTGAATGGAAGAGAAAGAA+AGG 0.522276 7.1:+4185412 MS.gene050808:CDS
GACCTGAGCAATTCTGATTG+TGG 0.524605 7.1:-4186310 None:intergenic
TTGACTACAGGTTATTGTTG+TGG 0.527192 7.1:+4186632 MS.gene050808:intron
TTGGGAATAGGAGGGGTAAG+AGG 0.528722 7.1:+4186030 MS.gene050808:CDS
ACATTTGTAGGCTTTGGCAT+TGG 0.530795 7.1:+4185897 MS.gene050808:intron
TTGTTGGCATTGGGAATAGG+AGG 0.534414 7.1:+4186021 MS.gene050808:CDS
GAGAAAGAAAGGTGGATTCA+GGG 0.534643 7.1:+4185423 MS.gene050808:CDS
AATACTCTCACAAACTTCAT+GGG 0.541870 7.1:+4185654 MS.gene050808:CDS
TATGAAATAAGTCACAAAGA+TGG 0.547171 7.1:+4186702 MS.gene050808:CDS
TATGGGATTTGTGGCAAACA+TGG 0.549979 7.1:+4185575 MS.gene050808:CDS
GGGTTAGTACACAAAGAGCT+TGG 0.556525 7.1:+4186187 MS.gene050808:CDS
TGAGATGAAGCCACCAACAA+GGG 0.570574 7.1:-4185694 None:intergenic
CATTTACATCCAAATGCATG+TGG 0.585392 7.1:+4185943 MS.gene050808:CDS
TATAATACAGGCAGATCAAG+AGG 0.592502 7.1:+4185366 MS.gene050808:intron
CTGAGATGAAGCCACCAACA+AGG 0.596410 7.1:-4185695 None:intergenic
ACACAAAGAGCTTGGCATTG+GGG 0.612368 7.1:+4186195 MS.gene050808:CDS
GTTGGCATTGGGAATAGGAG+GGG 0.621646 7.1:+4186023 MS.gene050808:CDS
TGTTGGCATTGGGAATAGGA+GGG 0.626274 7.1:+4186022 MS.gene050808:CDS
CCTGAGCAATTCTGATTGTG+GGG 0.627004 7.1:-4186308 None:intergenic
GAATGGAAGAGAAAGAAAGG+TGG 0.633493 7.1:+4185415 MS.gene050808:CDS
TAGTTCACACAAAACAAATG+AGG 0.637321 7.1:+4186739 MS.gene050808:CDS
AAATCAAGTTGTGTGAAAGG+TGG 0.639042 7.1:+4185967 MS.gene050808:CDS
GGGAAATCAAGTTGTGTGAA+AGG 0.644229 7.1:+4185964 MS.gene050808:CDS
ATTTACATCCAAATGCATGT+GGG 0.671883 7.1:+4185944 MS.gene050808:CDS
AAGTCACAAAGATGGAACAG+TGG 0.681162 7.1:+4186710 MS.gene050808:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGTAATTACAAAAATTT+AGG - chr7.1:4186533-4186552 None:intergenic 10.0%
!! AGTTGAAATTAATTAATGTA+TGG - chr7.1:4186395-4186414 None:intergenic 15.0%
!! TTAGTAAATGAATGTTAATA+AGG + chr7.1:4186449-4186468 MS.gene050808:intron 15.0%
!!! AGCTTAGTTTTATATTTTTA+TGG + chr7.1:4185600-4185619 MS.gene050808:CDS 15.0%
!!! TTTTTTGATATAACATTTGT+AGG + chr7.1:4185885-4185904 MS.gene050808:intron 15.0%
!! AAAAAAACTAAACTCTTTGT+TGG + chr7.1:4185475-4185494 MS.gene050808:intron 20.0%
!! AGTTTCAAATCTTATAATAC+AGG + chr7.1:4185354-4185373 MS.gene050808:intron 20.0%
!!! TAGTATATTGTTTAGAATCT+CGG - chr7.1:4185841-4185860 None:intergenic 20.0%
! AAACTCATCAAATATATGCA+TGG - chr7.1:4185339-4185358 None:intergenic 25.0%
! ATAACTATAGCTTCTTCTAT+TGG + chr7.1:4186228-4186247 MS.gene050808:CDS 25.0%
! GTTAACATGATCAATAGTTT+AGG - chr7.1:4185783-4185802 None:intergenic 25.0%
! TATGAAATAAGTCACAAAGA+TGG + chr7.1:4186702-4186721 MS.gene050808:CDS 25.0%
!! TAACATACTTTATTGACTAC+AGG + chr7.1:4186620-4186639 MS.gene050808:intron 25.0%
!! TTGGATCTTTTTCTTCAAAT+TGG - chr7.1:4186080-4186099 None:intergenic 25.0%
AATACTCTCACAAACTTCAT+GGG + chr7.1:4185654-4185673 MS.gene050808:CDS 30.0%
ATTTACATCCAAATGCATGT+GGG + chr7.1:4185944-4185963 MS.gene050808:CDS 30.0%
CAAATATATGCATGGAAACA+AGG - chr7.1:4185331-4185350 None:intergenic 30.0%
GATATAACATTTGTAGGCTT+TGG + chr7.1:4185891-4185910 MS.gene050808:intron 30.0%
TAATAAGGTCAATATCTGCT+AGG + chr7.1:4186464-4186483 MS.gene050808:intron 30.0%
TGAAGAAAAAGATCCAAATG+AGG + chr7.1:4186083-4186102 MS.gene050808:CDS 30.0%
!! AGGGCTTCTATGTTTATTTT+TGG + chr7.1:4185442-4185461 MS.gene050808:CDS 30.0%
!!! CACTTGCAAGTTTTTTCAAT+TGG + chr7.1:4186112-4186131 MS.gene050808:CDS 30.0%
!!! GGAGTTTTGATTCTATAGAA+AGG - chr7.1:4186279-4186298 None:intergenic 30.0%
!!! TGCATGCTTTTTTAATCTCT+AGG + chr7.1:4186503-4186522 MS.gene050808:intron 30.0%
ACTGAATGGAAGAGAAAGAA+AGG + chr7.1:4185412-4185431 MS.gene050808:CDS 35.0%
ATTGGACAATATGGGATTTG+TGG + chr7.1:4185566-4185585 MS.gene050808:CDS 35.0%
CAATACTCTCACAAACTTCA+TGG + chr7.1:4185653-4185672 MS.gene050808:CDS 35.0%
CATTTACATCCAAATGCATG+TGG + chr7.1:4185943-4185962 MS.gene050808:CDS 35.0%
CTTCTGATCAAATGTGTGTA+TGG - chr7.1:4185807-4185826 None:intergenic 35.0%
TATAATACAGGCAGATCAAG+AGG + chr7.1:4185366-4185385 MS.gene050808:intron 35.0%
TTACACATCACTGACATTGT+TGG + chr7.1:4186005-4186024 MS.gene050808:CDS 35.0%
TTGACTACAGGTTATTGTTG+TGG + chr7.1:4186632-4186651 MS.gene050808:intron 35.0%
! AAATCAAGTTGTGTGAAAGG+TGG + chr7.1:4185967-4185986 MS.gene050808:CDS 35.0%
! ACACATTTGATCAGAAGTGT+TGG + chr7.1:4185810-4185829 MS.gene050808:intron 35.0%
! CATGAAGTTTGTGAGAGTAT+TGG - chr7.1:4185655-4185674 None:intergenic 35.0%
! CTTTTGCTTAGTTCAACACT+TGG + chr7.1:4186135-4186154 MS.gene050808:CDS 35.0%
! TTGTCAGCATTGGACAATAT+GGG + chr7.1:4185558-4185577 MS.gene050808:CDS 35.0%
!! TTTTGGATCTCTAGAAGTTC+TGG + chr7.1:4185752-4185771 MS.gene050808:CDS 35.0%
AACTCAAGCTTCTCACTGAA+TGG + chr7.1:4185398-4185417 MS.gene050808:CDS 40.0%
AAGTCACAAAGATGGAACAG+TGG + chr7.1:4186710-4186729 MS.gene050808:CDS 40.0%
ACCTGAGCAATTCTGATTGT+GGG - chr7.1:4186312-4186331 None:intergenic 40.0%
ACTTTCTTGCTTTCCCTTGT+TGG + chr7.1:4185681-4185700 MS.gene050808:CDS 40.0%
AGAGGATCTATGACTGCATT+TGG + chr7.1:4186048-4186067 MS.gene050808:CDS 40.0%
AGATCCAAAAAGCAAGCAAG+TGG - chr7.1:4185742-4185761 None:intergenic 40.0%
AGTTGTGTGAAAGGTGGAAT+AGG + chr7.1:4185973-4185992 MS.gene050808:CDS 40.0%
ATCACTGACATTGTTGGCAT+TGG + chr7.1:4186011-4186030 MS.gene050808:CDS 40.0%
CTTGATTTCCCACATGCATT+TGG - chr7.1:4185955-4185974 None:intergenic 40.0%
GAATGGAAGAGAAAGAAAGG+TGG + chr7.1:4185415-4185434 MS.gene050808:CDS 40.0%
TACACAAAGAGCTTGGCATT+GGG + chr7.1:4186194-4186213 MS.gene050808:CDS 40.0%
TATAGTTCTTCGTGTGACTC+TGG - chr7.1:4186684-4186703 None:intergenic 40.0%
TATGGGATTTGTGGCAAACA+TGG + chr7.1:4185575-4185594 MS.gene050808:CDS 40.0%
TCAACACTTGGAGCAATTAC+AGG + chr7.1:4186147-4186166 MS.gene050808:CDS 40.0%
TCACTGACATTGTTGGCATT+GGG + chr7.1:4186012-4186031 MS.gene050808:CDS 40.0%
TGATGTAGTGTTGTCAGCAT+TGG + chr7.1:4185548-4185567 MS.gene050808:intron 40.0%
! ACATTGTTGGCATTGGGAAT+AGG + chr7.1:4186018-4186037 MS.gene050808:CDS 40.0%
! ACATTTGTAGGCTTTGGCAT+TGG + chr7.1:4185897-4185916 MS.gene050808:intron 40.0%
! AGAGAAAGAAAGGTGGATTC+AGG + chr7.1:4185422-4185441 MS.gene050808:CDS 40.0%
! GAGAAAGAAAGGTGGATTCA+GGG + chr7.1:4185423-4185442 MS.gene050808:CDS 40.0%
! GGGAAATCAAGTTGTGTGAA+AGG + chr7.1:4185964-4185983 MS.gene050808:CDS 40.0%
! GTTGTCAGCATTGGACAATA+TGG + chr7.1:4185557-4185576 MS.gene050808:CDS 40.0%
!! AGGTGTTACTGGTGTTGTTT+GGG + chr7.1:4186167-4186186 MS.gene050808:CDS 40.0%
!! TTCACCACTTGCTTGCTTTT+TGG + chr7.1:4185735-4185754 MS.gene050808:CDS 40.0%
ACACAAAGAGCTTGGCATTG+GGG + chr7.1:4186195-4186214 MS.gene050808:CDS 45.0%
CCTGAGCAATTCTGATTGTG+GGG - chr7.1:4186311-4186330 None:intergenic 45.0%
GACCTGAGCAATTCTGATTG+TGG - chr7.1:4186313-4186332 None:intergenic 45.0%
GTACACAAAGAGCTTGGCAT+TGG + chr7.1:4186193-4186212 MS.gene050808:CDS 45.0%
TGAGATGAAGCCACCAACAA+GGG - chr7.1:4185697-4185716 None:intergenic 45.0%
TTCTTGCTTTCCCTTGTTGG+TGG + chr7.1:4185684-4185703 MS.gene050808:CDS 45.0%
! GCAAGTGCTTTTGCCTCATT+TGG - chr7.1:4186099-4186118 None:intergenic 45.0%
! GGAGCAATTACAGGTGTTAC+TGG + chr7.1:4186156-4186175 MS.gene050808:CDS 45.0%
! GGGTTAGTACACAAAGAGCT+TGG + chr7.1:4186187-4186206 MS.gene050808:CDS 45.0%
! TGTTGGCATTGGGAATAGGA+GGG + chr7.1:4186022-4186041 MS.gene050808:CDS 45.0%
! TTGTTGGCATTGGGAATAGG+AGG + chr7.1:4186021-4186040 MS.gene050808:CDS 45.0%
!! CAGGTGTTACTGGTGTTGTT+TGG + chr7.1:4186166-4186185 MS.gene050808:CDS 45.0%
!! GTGAGAGTATTGGCAGAACT+TGG - chr7.1:4185645-4185664 None:intergenic 45.0%
ACTCTGGCAGTGACAGCTTT+CGG - chr7.1:4186668-4186687 None:intergenic 50.0%
CCCCACAATCAGAATTGCTC+AGG + chr7.1:4186308-4186327 MS.gene050808:CDS 50.0%
CTGAGATGAAGCCACCAACA+AGG - chr7.1:4185698-4185717 None:intergenic 50.0%
TTGGGAATAGGAGGGGTAAG+AGG + chr7.1:4186030-4186049 MS.gene050808:CDS 50.0%
! GGCTTTGTCACACTTGCTCT+TGG + chr7.1:4186249-4186268 MS.gene050808:CDS 50.0%
! GTTGGCATTGGGAATAGGAG+GGG + chr7.1:4186023-4186042 MS.gene050808:CDS 50.0%
CTGATTGTGGGGCTATCTGC+TGG - chr7.1:4186300-4186319 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4185288 4186760 4185288 ID=MS.gene050808
chr7.1 mRNA 4185288 4186760 4185288 ID=MS.gene050808.t1;Parent=MS.gene050808
chr7.1 exon 4185288 4185290 4185288 ID=MS.gene050808.t1.exon1;Parent=MS.gene050808.t1
chr7.1 CDS 4185288 4185290 4185288 ID=cds.MS.gene050808.t1;Parent=MS.gene050808.t1
chr7.1 exon 4185376 4185463 4185376 ID=MS.gene050808.t1.exon2;Parent=MS.gene050808.t1
chr7.1 CDS 4185376 4185463 4185376 ID=cds.MS.gene050808.t1;Parent=MS.gene050808.t1
chr7.1 exon 4185556 4185773 4185556 ID=MS.gene050808.t1.exon3;Parent=MS.gene050808.t1
chr7.1 CDS 4185556 4185773 4185556 ID=cds.MS.gene050808.t1;Parent=MS.gene050808.t1
chr7.1 exon 4185907 4186329 4185907 ID=MS.gene050808.t1.exon4;Parent=MS.gene050808.t1
chr7.1 CDS 4185907 4186329 4185907 ID=cds.MS.gene050808.t1;Parent=MS.gene050808.t1
chr7.1 exon 4186642 4186760 4186642 ID=MS.gene050808.t1.exon5;Parent=MS.gene050808.t1
chr7.1 CDS 4186642 4186760 4186642 ID=cds.MS.gene050808.t1;Parent=MS.gene050808.t1
Gene Sequence

>MS.gene050808

ATGGTAAGGTTCTACTCATTCATCTCACTCATTTTTCTAACCTTGTTTCCATGCATATATTTGATGAGTTTCAAATCTTATAATACAGGCAGATCAAGAGGAAACTGAAGAACTCAAGCTTCTCACTGAATGGAAGAGAAAGAAAGGTGGATTCAGGGCTTCTATGTTTATTTTTGGTAAGCAAAAGAAAAAAACTAAACTCTTTGTTGGTTCTGTTTTTTGCTAATTTGAATTTGATGCAAACTATGTTCTTGTTTTTTTGATGTAGTGTTGTCAGCATTGGACAATATGGGATTTGTGGCAAACATGGTTAGCTTAGTTTTATATTTTTATGGAGTGATGCACTTTGATCTACCAAGTTCTGCCAATACTCTCACAAACTTCATGGGATCAACTTTCTTGCTTTCCCTTGTTGGTGGCTTCATCTCAGATACTTACTTAAATAGATTCACCACTTGCTTGCTTTTTGGATCTCTAGAAGTTCTGGTAAGTCCTAAACTATTGATCATGTTAACACCATACACACATTTGATCAGAAGTGTTGGTGTTACCGAGATTCTAAACAATATACTAATATTTAGTATCTTAATATCTTATTTTTTTGATATAACATTTGTAGGCTTTGGCATTGGTTACTTTTCAAGCTGCTTCAGATCATTTACATCCAAATGCATGTGGGAAATCAAGTTGTGTGAAAGGTGGAATAGGATTCATGTTTTACACATCACTGACATTGTTGGCATTGGGAATAGGAGGGGTAAGAGGATCTATGACTGCATTTGGTGCTGACCAATTTGAAGAAAAAGATCCAAATGAGGCAAAAGCACTTGCAAGTTTTTTCAATTGGCTTTTGCTTAGTTCAACACTTGGAGCAATTACAGGTGTTACTGGTGTTGTTTGGGTTAGTACACAAAGAGCTTGGCATTGGGGATTTTTCATCATAACTATAGCTTCTTCTATTGGCTTTGTCACACTTGCTCTTGGTAAGCCTTTCTATAGAATCAAAACTCCAGCAGATAGCCCCACAATCAGAATTGCTCAGGTCTATTCTCAATCTCTATCTGATTAATAATTAATTATTTGATTAATCTATGAATTAAAGTACCATACATTAATTAATTTCAACTATTGACTTGAGATTAAACAACTGAAATTAAACAATTAGTAAATGAATGTTAATAAGGTCAATATCTGCTAGGTGCTAAACTATGTTACTGCATGCTTTTTTAATCTCTAGGAGTTCCTAAATTTTTGTAATTACTTAAAAGTGAGTAGATGATTACAGAGATTGAAAATATATTTGACTTTAATCTATTTTTGATGTTAAAAAAATAACATACTTTATTGACTACAGGTTATTGTTGTGGCATTTAAAAACCGAAAGCTGTCACTGCCAGAGTCACACGAAGAACTATATGAAATAAGTCACAAAGATGGAACAGTGGAGAAAATAGTTCACACAAAACAAATGAG

Protein sequence

>MS.gene050808.t1

MADQEETEELKLLTEWKRKKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLPSSANTLTNFMGSTFLLSLVGGFISDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIGFMFYTSLTLLALGIGGVRGSMTAFGADQFEEKDPNEAKALASFFNWLLLSSTLGAITGVTGVVWVSTQRAWHWGFFIITIASSIGFVTLALGKPFYRIKTPADSPTIRIAQVIVVAFKNRKLSLPESHEELYEISHKDGTVEKIVHTKQM