AlfalfaGEDB | MS.gene40107

M. sativa cultivar XinJiangDaYe / MS.gene40107

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40107.t1	AES90525.2	95.8	310	12	1	1	309	24	333	1.50E-160	575.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40107.t1	Q9T072	56.1	180	74	3	133	309	151	328	5.4e-42	172.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40107.t1	G7JTZ1	95.8	310	12	1	1	309	24	333	1.1e-160	575.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene40107.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene38577	MS.gene40107	PPI
MS.gene40107	MS.gene64138	PPI
MS.gene40107	MS.gene013121	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40107.t1	MTR_4g092700	95.806	310	12	1	1	309	24	333	0.0	614
MS.gene40107.t1	MTR_2g010450	54.155	349	115	9	4	309	7	353	4.51e-112	328
MS.gene40107.t1	MTR_5g014600	47.131	244	95	6	88	305	98	333	2.36e-59	193
MS.gene40107.t1	MTR_4g097940	43.462	260	137	6	54	309	75	328	5.64e-55	182
MS.gene40107.t1	MTR_4g097920	43.077	260	138	6	54	309	60	313	4.16e-53	176
MS.gene40107.t1	MTR_4g097920	43.077	260	138	6	54	309	75	328	5.00e-53	176
MS.gene40107.t1	MTR_5g014520	50.267	187	91	2	117	302	140	325	1.97e-52	175
MS.gene40107.t1	MTR_4g097950	49.333	225	88	9	94	302	31	245	8.60e-47	158
MS.gene40107.t1	MTR_5g014640	33.538	325	179	9	1	305	15	322	3.49e-46	159
MS.gene40107.t1	MTR_0250s0040	44.737	190	93	3	126	309	80	263	7.68e-45	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40107.t1	AT4G37850	56.111	180	74	3	133	309	151	328	1.74e-56	186
MS.gene40107.t1	AT4G37850	56.111	180	74	3	133	309	151	328	1.74e-56	186
MS.gene40107.t1	AT2G22760	48.864	176	86	2	131	302	116	291	1.76e-49	166
MS.gene40107.t1	AT2G22750	51.174	213	91	7	96	301	91	297	9.52e-46	157
MS.gene40107.t1	AT2G22750	51.174	213	91	7	96	301	115	321	1.16e-45	157
MS.gene40107.t1	AT2G22750	51.174	213	91	7	96	301	119	325	1.16e-45	157
MS.gene40107.t1	AT2G22750	51.174	213	90	8	96	301	91	296	2.62e-44	153
MS.gene40107.t1	AT2G22750	51.174	213	90	8	96	301	119	324	3.68e-44	154
MS.gene40107.t1	AT2G22770	40.773	233	107	5	85	302	99	315	1.69e-42	149
MS.gene40107.t1	AT2G22760	46.541	159	82	1	131	286	116	274	2.25e-41	145

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Find 55 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCATGAAACTGCTAT+TGG	0.489746	4.3:-21429529	None:intergenic
AACTCTTCTGCAGAATCTGG+TGG	0.615291	4.3:+21429369	MS.gene40107:CDS
AAGCCTAAGGATGAGATGAT+TGG	0.518114	4.3:+21428747	MS.gene40107:CDS
AATAGCAGTTTCATGACATT+TGG	0.296146	4.3:+21429531	MS.gene40107:CDS
AATGAAAGAAGATTCGGGTA+CGG	0.630607	4.3:-21428687	None:intergenic
ACTATATGTCTTACCTGCTC+AGG	0.472883	4.3:-21428287	None:intergenic
ACTTCTGACATGATTTCTCA+AGG	0.567842	4.3:+21428789	MS.gene40107:CDS
AGAATATTTCATTTATCAGA+GGG	0.537343	4.3:+21428261	MS.gene40107:CDS
AGAGAAGGTGAAGGTTCTTG+AGG	0.571434	4.3:+21429272	MS.gene40107:CDS
AGGAACCTTTGAGGCCAAAA+AGG	0.379217	4.3:+21428809	MS.gene40107:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTTAAGTCCTGCATT+AGG	-	chr4.3:21429060-21429079	None:intergenic	30.0%
AAATGTCATGAAACTGCTAT+TGG	-	chr4.3:21429532-21429551	None:intergenic	30.0%
AATAGCAGTTTCATGACATT+TGG	+	chr4.3:21429531-21429550	MS.gene40107:CDS	30.0%
AGTTTGGATAAACGTATGAA+TGG	-	chr4.3:21428614-21428633	None:intergenic	30.0%
ATAGCAGTTTCATGACATTT+GGG	+	chr4.3:21429532-21429551	MS.gene40107:CDS	30.0%
ATATAGTAGCTGAAAGAAAG+CGG	+	chr4.3:21428868-21428887	MS.gene40107:CDS	30.0%
ATATTTGTGCAATTTGCAGA+TGG	+	chr4.3:21429756-21429775	MS.gene40107:intron	30.0%
CAAAATCTTGCTTCAATTTC+TGG	-	chr4.3:21429414-21429433	None:intergenic	30.0%
CTTAAAGAAATTGCAAGAGA+AGG	+	chr4.3:21429257-21429276	MS.gene40107:CDS	30.0%
GACAATTGTAGTAATTTCGT+TGG	-	chr4.3:21429722-21429741	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	21428257	21429849	21428257	ID=MS.gene40107
chr4.3	mRNA	21428257	21429849	21428257	ID=MS.gene40107.t1;Parent=MS.gene40107
chr4.3	exon	21428257	21428295	21428257	ID=MS.gene40107.t1.exon1;Parent=MS.gene40107.t1
chr4.3	CDS	21428257	21428295	21428257	ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3	exon	21428504	21428950	21428504	ID=MS.gene40107.t1.exon2;Parent=MS.gene40107.t1
chr4.3	CDS	21428504	21428950	21428504	ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3	exon	21429219	21429587	21429219	ID=MS.gene40107.t1.exon3;Parent=MS.gene40107.t1
chr4.3	CDS	21429219	21429587	21429219	ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3	exon	21429775	21429849	21429775	ID=MS.gene40107.t1.exon4;Parent=MS.gene40107.t1
chr4.3	CDS	21429775	21429849	21429775	ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1

Gene Sequence

>MS.gene40107

ATGGAGAATATTTCATTTATCAGAGGGTTTCCTGAGCAGGTAAGACATATAGTTCTTGCAAATAGTTTTTCTCTGAACTTACTATACATTCATACTTTGGCAGTGACTAATTTTGGAACCATCTAACATTTGGTTAGAAAATAAGACAAGTATCTAATAATAAAAAAGAGAAGTAATCTAATAAAGGCACAAGGTAAATGCATGAAATTTCCATGAACATTGTGAAAACATGTGTTTGATCTTGCAGGAAATGATGGAGGATCCTTCATTTCTTCATCGTCAGTGGCATTTGAGCTCTATCAATGAGTCTAACTCACTGCCAATAGGTACTGCTTTTGGAGACACTTCACAACACCATTCATACGTTTATCCAAACTTCAACCCTAGAACTTCAATGGAAACTGCTCAGACACTAGAGACTCAATTTGTTCCGTACCCGAATCTTCTTTCATTTGTCGATTTGAATCAGTTAAATCAGTTGGGATTGGTGAAGCCTAAGGATGAGATGATTGGTTCTCAAAACAACAACACAACTTCTGACATGATTTCTCAAGGAACCTTTGAGGCCAAAAAGGTAGCAACACGTCCTAAGCTCTCTCTTCCTCAAGACCATATAGTAGCTGAAAGAAAGCGGCGTGAGAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAAAAGGTATACAATATTCGACTATTGCAAATTTGACATTTTATTTTGAACATGACTCAACTCTACAAAACAAATTTGTAAGGTGAAGATTGCATAGGCTTTATGATCTCTGCCTAATGCAGGACTTAAGTTTTTTCTCGATATCTATGTTGAACACATGTTGGATCATTTAGTGTTTACTATTAGTAGGACACACGGTGAATATATAATGTGTTTGTGGTACTTTCTTTAACAATTTTTGTCGTCTCGTTTTTCATTGTGCTACGACTAACAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTAAAGAAATTGCAAGAGAAGGTGAAGGTTCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAATTTGTGGTGGTTGTGAAGAAATATCAACTATCCAATGATGTTGAAAACTCTTCTGCAGAATCTGGTGGTCCCTTTGACGAGGAACTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAGTTCACTGTGAGAAAATAAAAGGAGTTGTGGAAAAAACAATCCATGAAATCGAGAAACTCAATCTAAAAGTCACCAATAGCAGTTTCATGACATTTGGGAGTTGTGCACTTGATATAACAATTATTGCACAGGTAATCTTTGTTTCAACAAAAGTATTGAATTAAGTTTCAGTAGTTATATTTTAAGACTTTTGACTACTTTAATGAAAAAACTTGCTTATTTACTGTATATCTATCTATGCATAATTTTCTATTATTTTGTTCCAACGAAATTACTACAATTGTCTATCAATATGGAAAATATTTGTGCAATTTGCAGATGGATATGGAATTTTGCATGACGGTGAAGGATCTTGTGAGAAACCTACGCTCAGTTTTTACGTCTTTCATCTAA

Protein sequence

>MS.gene40107.t1

MENISFIRGFPEQEMMEDPSFLHRQWHLSSINESNSLPIGTAFGDTSQHHSYVYPNFNPRTSMETAQTLETQFVPYPNLLSFVDLNQLNQLGLVKPKDEMIGSQNNNTTSDMISQGTFEAKKVATRPKLSLPQDHIVAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKVLEEEQNMKKNVEFVVVVKKYQLSNDVENSSAESGGPFDEELPEIEARFCDRNVLIRVHCEKIKGVVEKTIHEIEKLNLKVTNSSFMTFGSCALDITIIAQMDMEFCMTVKDLVRNLRSVFTSFI