AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40107.t1 MTR_4g092700 95.806 310 12 1 1 309 24 333 0.0 614
MS.gene40107.t1 MTR_2g010450 54.155 349 115 9 4 309 7 353 4.51e-112 328
MS.gene40107.t1 MTR_5g014600 47.131 244 95 6 88 305 98 333 2.36e-59 193
MS.gene40107.t1 MTR_4g097940 43.462 260 137 6 54 309 75 328 5.64e-55 182
MS.gene40107.t1 MTR_4g097920 43.077 260 138 6 54 309 60 313 4.16e-53 176
MS.gene40107.t1 MTR_4g097920 43.077 260 138 6 54 309 75 328 5.00e-53 176
MS.gene40107.t1 MTR_5g014520 50.267 187 91 2 117 302 140 325 1.97e-52 175
MS.gene40107.t1 MTR_4g097950 49.333 225 88 9 94 302 31 245 8.60e-47 158
MS.gene40107.t1 MTR_5g014640 33.538 325 179 9 1 305 15 322 3.49e-46 159
MS.gene40107.t1 MTR_0250s0040 44.737 190 93 3 126 309 80 263 7.68e-45 153
MS.gene40107.t1 MTR_8g009020 38.819 237 119 6 75 302 99 318 1.02e-44 155
MS.gene40107.t1 MTR_2g104550 48.000 175 86 2 134 305 138 310 7.04e-44 152
MS.gene40107.t1 MTR_6g047570 47.953 171 87 2 133 302 158 327 2.28e-43 152
MS.gene40107.t1 MTR_5g014560 41.014 217 121 3 89 304 91 301 2.56e-43 150
MS.gene40107.t1 MTR_0246s0020 45.729 199 98 5 118 309 182 377 3.38e-43 152
MS.gene40107.t1 MTR_0011s0210 44.118 170 95 0 133 302 182 351 8.13e-41 145
MS.gene40107.t1 MTR_0011s0260 44.706 170 94 0 133 302 182 351 1.29e-40 145
MS.gene40107.t1 MTR_4g009540 44.944 178 92 1 134 305 152 329 1.29e-40 144
MS.gene40107.t1 MTR_4g066460 34.551 301 140 9 32 308 59 326 1.71e-40 144
MS.gene40107.t1 MTR_4g009110 45.714 175 92 2 134 305 174 348 3.48e-39 141
MS.gene40107.t1 MTR_8g009010 38.835 206 86 3 105 309 108 274 2.70e-38 138
MS.gene40107.t1 MTR_0246s0020 47.727 176 82 5 118 286 182 354 4.50e-38 139
MS.gene40107.t1 MTR_4g067010 41.799 189 96 4 126 309 140 319 6.58e-38 137
MS.gene40107.t1 MTR_2g104490 44.253 174 95 1 134 307 137 308 1.41e-37 136
MS.gene40107.t1 MTR_7g080780 44.211 190 94 5 114 302 133 311 5.29e-37 134
MS.gene40107.t1 MTR_7g080780 44.211 190 94 5 114 302 146 324 5.48e-37 135
MS.gene40107.t1 MTR_4g066380 39.409 203 110 4 114 309 128 324 6.62e-37 134
MS.gene40107.t1 MTR_4g009540 45.283 159 81 1 134 286 152 310 4.37e-35 129
MS.gene40107.t1 MTR_2g104560 37.288 177 95 4 133 302 53 220 1.10e-34 126
MS.gene40107.t1 MTR_0246s0050 39.326 178 99 2 133 309 150 319 2.19e-34 127
MS.gene40107.t1 MTR_4g098035 39.326 178 99 2 133 309 171 340 2.68e-34 128
MS.gene40107.t1 MTR_2g104490 42.857 161 90 1 134 294 137 295 1.16e-33 125
MS.gene40107.t1 MTR_2g104530 36.994 173 105 2 135 307 106 274 5.77e-31 117
MS.gene40107.t1 MTR_2g104590 37.853 177 84 4 134 306 69 223 3.22e-29 112
MS.gene40107.t1 MTR_8g069740 36.667 180 106 3 109 285 91 265 1.98e-28 110
MS.gene40107.t1 MTR_2g104650 37.624 202 116 5 109 306 73 268 3.22e-28 110
MS.gene40107.t1 MTR_2g104500 34.911 169 105 1 134 302 104 267 9.18e-28 109
MS.gene40107.t1 MTR_7g451650 36.424 151 86 2 157 307 57 197 4.32e-24 97.4
MS.gene40107.t1 MTR_4g009510 37.853 177 96 6 132 307 42 205 7.81e-24 97.1
MS.gene40107.t1 MTR_5g014550 41.732 127 72 2 164 289 54 179 2.57e-23 95.5
MS.gene40107.t1 MTR_6g047550 67.143 70 22 1 133 202 172 240 5.21e-22 93.6
MS.gene40107.t1 MTR_4g009420 35.099 151 80 2 157 307 65 197 5.50e-22 91.7
MS.gene40107.t1 MTR_7g050350 35.172 145 84 2 163 307 1 135 9.22e-22 89.4
MS.gene40107.t1 MTR_7g451650 35.172 145 84 2 163 307 1 135 9.22e-22 89.4
MS.gene40107.t1 MTR_7g451650 36.567 134 75 2 157 290 57 180 1.78e-20 87.4
MS.gene40107.t1 MTR_4g009420 35.075 134 69 2 157 290 65 180 2.42e-18 82.0
MS.gene40107.t1 MTR_8g027495 35.036 137 81 3 132 268 456 584 4.36e-17 82.0
MS.gene40107.t1 MTR_7g096350 56.250 64 28 0 132 195 353 416 4.83e-17 81.6
MS.gene40107.t1 MTR_7g117670 35.507 138 79 3 132 268 400 528 8.04e-17 81.3
MS.gene40107.t1 MTR_8g067280 32.278 158 78 3 132 269 460 608 1.61e-16 80.5
MS.gene40107.t1 MTR_1g072320 31.293 147 93 2 127 265 463 609 1.73e-15 77.4
MS.gene40107.t1 MTR_8g024790 29.091 165 98 4 119 272 274 430 4.37e-15 75.9
MS.gene40107.t1 MTR_5g030430 30.201 149 93 2 132 269 491 639 3.36e-14 73.6
MS.gene40107.t1 MTR_3g030700 26.882 186 109 4 113 285 181 352 8.64e-14 71.6
MS.gene40107.t1 MTR_3g498695 26.455 189 117 4 102 280 278 454 1.98e-13 70.9
MS.gene40107.t1 MTR_3g498695 26.455 189 117 4 102 280 278 454 2.06e-13 70.9
MS.gene40107.t1 MTR_8g064700 27.236 246 161 9 50 283 159 398 1.24e-12 68.2
MS.gene40107.t1 MTR_7g083900 27.059 170 96 3 131 280 283 444 1.36e-12 68.2
MS.gene40107.t1 MTR_7g083900 27.059 170 96 3 131 280 283 444 1.37e-12 68.2
MS.gene40107.t1 MTR_2g038040 27.439 164 102 4 135 283 53 214 2.01e-12 66.2
MS.gene40107.t1 MTR_8g098275 38.095 84 47 1 112 190 217 300 2.42e-12 67.4
MS.gene40107.t1 MTR_8g024770 26.630 184 117 4 119 290 262 439 3.13e-12 67.0
MS.gene40107.t1 MTR_8g098275 43.284 67 38 0 124 190 298 364 3.40e-12 67.0
MS.gene40107.t1 MTR_8g098275 43.284 67 38 0 124 190 391 457 4.52e-12 67.0
MS.gene40107.t1 MTR_1g112680 50.909 55 27 0 135 189 318 372 1.38e-11 65.5
MS.gene40107.t1 MTR_2g084280 28.777 139 93 4 136 272 135 269 1.54e-11 64.3
MS.gene40107.t1 MTR_3g104100 25.444 169 96 4 132 280 193 351 2.64e-11 64.3
MS.gene40107.t1 MTR_2g081040 26.036 169 95 4 132 280 175 333 3.10e-11 63.9
MS.gene40107.t1 MTR_4g057270 27.711 166 103 5 136 296 151 304 6.33e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40107.t1 AT4G37850 56.111 180 74 3 133 309 151 328 1.74e-56 186
MS.gene40107.t1 AT4G37850 56.111 180 74 3 133 309 151 328 1.74e-56 186
MS.gene40107.t1 AT2G22760 48.864 176 86 2 131 302 116 291 1.76e-49 166
MS.gene40107.t1 AT2G22750 51.174 213 91 7 96 301 91 297 9.52e-46 157
MS.gene40107.t1 AT2G22750 51.174 213 91 7 96 301 115 321 1.16e-45 157
MS.gene40107.t1 AT2G22750 51.174 213 91 7 96 301 119 325 1.16e-45 157
MS.gene40107.t1 AT2G22750 51.174 213 90 8 96 301 91 296 2.62e-44 153
MS.gene40107.t1 AT2G22750 51.174 213 90 8 96 301 119 324 3.68e-44 154
MS.gene40107.t1 AT2G22770 40.773 233 107 5 85 302 99 315 1.69e-42 149
MS.gene40107.t1 AT2G22760 46.541 159 82 1 131 286 116 274 2.25e-41 145
MS.gene40107.t1 AT2G46510 42.342 111 46 2 132 242 393 485 3.22e-18 85.5
MS.gene40107.t1 AT1G32640 37.063 143 83 2 132 270 450 589 2.21e-17 82.8
MS.gene40107.t1 AT4G17880 31.944 144 88 3 132 270 414 552 2.75e-15 76.6
MS.gene40107.t1 AT5G46760 32.895 152 80 4 132 270 413 555 5.42e-15 75.9
MS.gene40107.t1 AT1G01260 45.455 77 40 1 116 190 413 489 1.53e-14 74.3
MS.gene40107.t1 AT1G01260 45.455 77 40 1 116 190 413 489 1.53e-14 74.3
MS.gene40107.t1 AT1G01260 45.455 77 40 1 116 190 413 489 1.53e-14 74.3
MS.gene40107.t1 AT4G16430 51.562 64 31 0 134 197 320 383 2.03e-14 73.9
MS.gene40107.t1 AT4G29930 30.357 168 103 6 123 289 46 200 2.00e-13 68.9
MS.gene40107.t1 AT4G09820 29.496 139 75 3 131 266 357 475 2.18e-13 70.9
MS.gene40107.t1 AT1G12860 30.573 157 101 5 131 280 264 419 2.41e-13 70.5
MS.gene40107.t1 AT4G29930 27.933 179 96 5 123 289 46 203 2.47e-13 68.6
MS.gene40107.t1 AT1G12860 30.573 157 101 5 131 280 264 419 3.33e-13 70.1
MS.gene40107.t1 AT2G16910 28.646 192 105 5 135 300 315 500 3.93e-13 70.1
MS.gene40107.t1 AT3G26744 28.750 160 104 3 131 280 304 463 7.49e-13 69.3
MS.gene40107.t1 AT3G26744 28.750 160 104 3 131 280 304 463 8.59e-13 68.9
MS.gene40107.t1 AT3G26744 28.750 160 104 3 131 280 304 463 8.59e-13 68.9
MS.gene40107.t1 AT3G26744 28.750 160 104 3 131 280 304 463 8.59e-13 68.9
MS.gene40107.t1 AT5G57150 30.769 156 85 4 135 274 55 203 1.10e-12 66.6
MS.gene40107.t1 AT5G57150 30.769 156 85 4 135 274 56 204 1.14e-12 66.6
MS.gene40107.t1 AT5G57150 30.769 156 85 4 135 274 56 204 1.23e-12 66.6
MS.gene40107.t1 AT4G29930 29.091 165 103 5 123 286 46 197 1.26e-12 66.6
MS.gene40107.t1 AT5G57150 31.210 157 83 4 135 274 55 203 1.93e-12 66.2
MS.gene40107.t1 AT5G57150 30.769 156 85 4 135 274 56 204 3.14e-12 65.9
MS.gene40107.t1 AT1G63650 36.145 83 53 0 134 216 405 487 4.30e-12 67.0
MS.gene40107.t1 AT1G63650 36.145 83 53 0 134 216 405 487 4.30e-12 67.0
MS.gene40107.t1 AT1G63650 36.145 83 53 0 134 216 405 487 4.30e-12 67.0
MS.gene40107.t1 AT3G61950 28.369 141 99 1 134 272 128 268 2.23e-11 63.9
MS.gene40107.t1 AT3G61950 28.369 141 99 1 134 272 128 268 3.51e-11 63.5
MS.gene40107.t1 AT3G61950 28.369 141 99 1 134 272 179 319 4.22e-11 63.5
MS.gene40107.t1 AT4G00870 49.091 55 28 0 135 189 250 304 5.42e-11 63.5
MS.gene40107.t1 AT5G46830 48.333 60 31 0 132 191 341 400 5.83e-11 63.5
MS.gene40107.t1 AT3G61950 28.369 141 99 1 134 272 179 319 6.24e-11 63.2
MS.gene40107.t1 AT5G41315 39.286 84 43 2 112 187 416 499 6.66e-11 63.5
MS.gene40107.t1 AT5G41315 39.286 84 43 2 112 187 419 502 6.80e-11 63.5
MS.gene40107.t1 AT5G41315 39.286 84 43 2 112 187 411 494 7.01e-11 63.5
MS.gene40107.t1 AT4G29930 26.596 188 113 5 123 289 46 229 8.88e-11 61.6

Find 55 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTGCTTCAATTTC+TGG 0.046048 4.3:-21429411 None:intergenic
GCTCTATCTGCCCTTGTTCC+TGG 0.240482 4.3:+21428918 MS.gene40107:CDS
GCAGTTTCCATTGAAGTTCT+AGG 0.252953 4.3:-21428639 None:intergenic
ATGGACAAAGTTACTGTTCT+TGG 0.276006 4.3:+21429219 MS.gene40107:CDS
AATAGCAGTTTCATGACATT+TGG 0.296146 4.3:+21429531 MS.gene40107:CDS
GCTTTCTTTCAGCTACTATA+TGG 0.308218 4.3:-21428866 None:intergenic
GTTCACTGTGAGAAAATAAA+AGG 0.311616 4.3:+21429456 MS.gene40107:CDS
CTGCCAATAGGTACTGCTTT+TGG 0.314519 4.3:+21428573 MS.gene40107:CDS
GATTGAGTTTCTCGATTTCA+TGG 0.323483 4.3:-21429497 None:intergenic
GTGCAATTTGCAGATGGATA+TGG 0.328392 4.3:+21429762 MS.gene40107:intron
AGGAACCTTTGAGGCCAAAA+AGG 0.379217 4.3:+21428809 MS.gene40107:CDS
TCGACAAATGAAAGAAGATT+CGG 0.392423 4.3:-21428693 None:intergenic
GAAGTTCTAGGGTTGAAGTT+TGG 0.405401 4.3:-21428627 None:intergenic
TATCAGAGGGTTTCCTGAGC+AGG 0.415708 4.3:+21428274 MS.gene40107:CDS
ATAGCAGTTTCATGACATTT+GGG 0.420095 4.3:+21429532 MS.gene40107:CDS
GAAAACTCTTCTGCAGAATC+TGG 0.430912 4.3:+21429366 MS.gene40107:CDS
TTTGAATCAGTTAAATCAGT+TGG 0.433019 4.3:+21428716 MS.gene40107:CDS
TCTCACAGTGAACTCTTATG+AGG 0.440028 4.3:-21429446 None:intergenic
CTTCAACCCTAGAACTTCAA+TGG 0.444938 4.3:+21428632 MS.gene40107:CDS
CAGTTTCCATTGAAGTTCTA+GGG 0.451054 4.3:-21428638 None:intergenic
TTGAATCAGTTAAATCAGTT+GGG 0.451883 4.3:+21428717 MS.gene40107:CDS
GAGTCTAACTCACTGCCAAT+AGG 0.462111 4.3:+21428561 MS.gene40107:CDS
GAACCAATCATCTCATCCTT+AGG 0.467424 4.3:-21428750 None:intergenic
TCTCCAAAAGCAGTACCTAT+TGG 0.467684 4.3:-21428576 None:intergenic
GAGAATATTTCATTTATCAG+AGG 0.468225 4.3:+21428260 MS.gene40107:CDS
CGACAAATGAAAGAAGATTC+GGG 0.471965 4.3:-21428692 None:intergenic
ACTATATGTCTTACCTGCTC+AGG 0.472883 4.3:-21428287 None:intergenic
TTCTGGCAGTTCCTCGTCAA+AGG 0.474337 4.3:-21429394 None:intergenic
TTTGATCTTGCAGGAAATGA+TGG 0.481839 4.3:+21428491 MS.gene40107:intron
CCTTGTTCCTGGACTACAAA+AGG 0.484384 4.3:+21428929 MS.gene40107:CDS
GATTTCTCAAGGAACCTTTG+AGG 0.485480 4.3:+21428800 MS.gene40107:CDS
AAATGTCATGAAACTGCTAT+TGG 0.489746 4.3:-21429529 None:intergenic
TCTGGCAGTTCCTCGTCAAA+GGG 0.506650 4.3:-21429393 None:intergenic
CTTCATTTCTTCATCGTCAG+TGG 0.509736 4.3:+21428520 MS.gene40107:CDS
TCAGTTAAATCAGTTGGGAT+TGG 0.511136 4.3:+21428722 MS.gene40107:CDS
TCTTGAGGAAGAGAGAGCTT+AGG 0.514134 4.3:-21428843 None:intergenic
AAGCCTAAGGATGAGATGAT+TGG 0.518114 4.3:+21428747 MS.gene40107:CDS
TGAGAAAATAAAAGGAGTTG+TGG 0.528193 4.3:+21429464 MS.gene40107:CDS
CACTGACGATGAAGAAATGA+AGG 0.528531 4.3:-21428519 None:intergenic
TGATATAACAATTATTGCAC+AGG 0.531379 4.3:+21429566 MS.gene40107:CDS
CAGATAGAGCAATGAAGCGC+TGG 0.536270 4.3:-21428905 None:intergenic
AGAATATTTCATTTATCAGA+GGG 0.537343 4.3:+21428261 MS.gene40107:CDS
GTTGGGATTGGTGAAGCCTA+AGG 0.542119 4.3:+21428734 MS.gene40107:CDS
ACTTCTGACATGATTTCTCA+AGG 0.567842 4.3:+21428789 MS.gene40107:CDS
AGTTTGGATAAACGTATGAA+TGG 0.568981 4.3:-21428611 None:intergenic
AGAGAAGGTGAAGGTTCTTG+AGG 0.571434 4.3:+21429272 MS.gene40107:CDS
CTTAAAGAAATTGCAAGAGA+AGG 0.587502 4.3:+21429257 MS.gene40107:CDS
TCAGCTACTATATGGTCTTG+AGG 0.590748 4.3:-21428858 None:intergenic
GAAGGTGAAGGTTCTTGAGG+AGG 0.607165 4.3:+21429275 MS.gene40107:CDS
AACTCTTCTGCAGAATCTGG+TGG 0.615291 4.3:+21429369 MS.gene40107:CDS
ATATAGTAGCTGAAAGAAAG+CGG 0.618259 4.3:+21428868 MS.gene40107:CDS
AATGAAAGAAGATTCGGGTA+CGG 0.630607 4.3:-21428687 None:intergenic
ATCTGGTGGTCCCTTTGACG+AGG 0.636520 4.3:+21429383 MS.gene40107:CDS
GATCTTGCAGGAAATGATGG+AGG 0.636854 4.3:+21428494 MS.gene40107:intron
GAAATTGCAAGAGAAGGTGA+AGG 0.649815 4.3:+21429263 MS.gene40107:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAGAAGTAATCTAATAA+AGG + chr4.3:21428421-21428440 MS.gene40107:intron 20.0%
!! AGAATATTTCATTTATCAGA+GGG + chr4.3:21428261-21428280 MS.gene40107:CDS 20.0%
!! ATTTAGTGTTTACTATTAGT+AGG + chr4.3:21429112-21429131 MS.gene40107:intron 20.0%
! ACTACAATTGTCTATCAATA+TGG + chr4.3:21429730-21429749 MS.gene40107:intron 25.0%
! CTCTACAAAACAAATTTGTA+AGG + chr4.3:21429005-21429024 MS.gene40107:intron 25.0%
! CTTACTATACATTCATACTT+TGG + chr4.3:21428334-21428353 MS.gene40107:intron 25.0%
! GAGAATATTTCATTTATCAG+AGG + chr4.3:21428260-21428279 MS.gene40107:CDS 25.0%
! GTGAATATATAATGTGTTTG+TGG + chr4.3:21429142-21429161 MS.gene40107:intron 25.0%
! TGATATAACAATTATTGCAC+AGG + chr4.3:21429566-21429585 MS.gene40107:CDS 25.0%
! TTGAATCAGTTAAATCAGTT+GGG + chr4.3:21428717-21428736 MS.gene40107:CDS 25.0%
! TTTGAATCAGTTAAATCAGT+TGG + chr4.3:21428716-21428735 MS.gene40107:CDS 25.0%
!! TTTTCTAACCAAATGTTAGA+TGG - chr4.3:21428378-21428397 None:intergenic 25.0%
AAAAACTTAAGTCCTGCATT+AGG - chr4.3:21429060-21429079 None:intergenic 30.0%
AAATGTCATGAAACTGCTAT+TGG - chr4.3:21429532-21429551 None:intergenic 30.0%
AATAGCAGTTTCATGACATT+TGG + chr4.3:21429531-21429550 MS.gene40107:CDS 30.0%
AGTTTGGATAAACGTATGAA+TGG - chr4.3:21428614-21428633 None:intergenic 30.0%
ATAGCAGTTTCATGACATTT+GGG + chr4.3:21429532-21429551 MS.gene40107:CDS 30.0%
ATATAGTAGCTGAAAGAAAG+CGG + chr4.3:21428868-21428887 MS.gene40107:CDS 30.0%
ATATTTGTGCAATTTGCAGA+TGG + chr4.3:21429756-21429775 MS.gene40107:intron 30.0%
CAAAATCTTGCTTCAATTTC+TGG - chr4.3:21429414-21429433 None:intergenic 30.0%
CTTAAAGAAATTGCAAGAGA+AGG + chr4.3:21429257-21429276 MS.gene40107:CDS 30.0%
GACAATTGTAGTAATTTCGT+TGG - chr4.3:21429722-21429741 None:intergenic 30.0%
GTTCACTGTGAGAAAATAAA+AGG + chr4.3:21429456-21429475 MS.gene40107:CDS 30.0%
TATCTATGTTGAACACATGT+TGG + chr4.3:21429086-21429105 MS.gene40107:intron 30.0%
TCGACAAATGAAAGAAGATT+CGG - chr4.3:21428696-21428715 None:intergenic 30.0%
TGAGAAAATAAAAGGAGTTG+TGG + chr4.3:21429464-21429483 MS.gene40107:CDS 30.0%
TTTACTATTAGTAGGACACA+CGG + chr4.3:21429120-21429139 MS.gene40107:intron 30.0%
! ACATGTTTTCACAATGTTCA+TGG - chr4.3:21428470-21428489 None:intergenic 30.0%
! AGAAGAGTTTTCAACATCAT+TGG - chr4.3:21429358-21429377 None:intergenic 30.0%
! AGTAATCTAATAAAGGCACA+AGG + chr4.3:21428428-21428447 MS.gene40107:intron 30.0%
!!! TTTTGGAACCATCTAACATT+TGG + chr4.3:21428367-21428386 MS.gene40107:intron 30.0%
AAACATGTGTTTGATCTTGC+AGG + chr4.3:21428482-21428501 MS.gene40107:intron 35.0%
AATGAAAGAAGATTCGGGTA+CGG - chr4.3:21428690-21428709 None:intergenic 35.0%
ACAGAACATGAAGAAAAACG+TGG + chr4.3:21429299-21429318 MS.gene40107:CDS 35.0%
ACTTCTGACATGATTTCTCA+AGG + chr4.3:21428789-21428808 MS.gene40107:CDS 35.0%
ATGGACAAAGTTACTGTTCT+TGG + chr4.3:21429219-21429238 MS.gene40107:CDS 35.0%
CAGTTTCCATTGAAGTTCTA+GGG - chr4.3:21428641-21428660 None:intergenic 35.0%
CGACAAATGAAAGAAGATTC+GGG - chr4.3:21428695-21428714 None:intergenic 35.0%
GAAGAAAAACGTGGAATTTG+TGG + chr4.3:21429308-21429327 MS.gene40107:CDS 35.0%
GATTGAGTTTCTCGATTTCA+TGG - chr4.3:21429500-21429519 None:intergenic 35.0%
GCTTTCTTTCAGCTACTATA+TGG - chr4.3:21428869-21428888 None:intergenic 35.0%
TCAGTTAAATCAGTTGGGAT+TGG + chr4.3:21428722-21428741 MS.gene40107:CDS 35.0%
TTGTAAGGTGAAGATTGCAT+AGG + chr4.3:21429020-21429039 MS.gene40107:intron 35.0%
TTTGATCTTGCAGGAAATGA+TGG + chr4.3:21428491-21428510 MS.gene40107:intron 35.0%
! ACTTTGGCAGTGACTAATTT+TGG + chr4.3:21428350-21428369 MS.gene40107:intron 35.0%
! GGATATGGAATTTTGCATGA+CGG + chr4.3:21429777-21429796 MS.gene40107:CDS 35.0%
! TTGTATACCTTTTGTAGTCC+AGG - chr4.3:21428939-21428958 None:intergenic 35.0%
AAGACGTAAAAACTGAGCGT+AGG - chr4.3:21429822-21429841 None:intergenic 40.0%
AAGCCTAAGGATGAGATGAT+TGG + chr4.3:21428747-21428766 MS.gene40107:CDS 40.0%
ACTATATGTCTTACCTGCTC+AGG - chr4.3:21428290-21428309 None:intergenic 40.0%
ATTGTGCTACGACTAACAGA+TGG + chr4.3:21429200-21429219 MS.gene40107:intron 40.0%
CACTGACGATGAAGAAATGA+AGG - chr4.3:21428522-21428541 None:intergenic 40.0%
CTTCAACCCTAGAACTTCAA+TGG + chr4.3:21428632-21428651 MS.gene40107:CDS 40.0%
CTTCATTTCTTCATCGTCAG+TGG + chr4.3:21428520-21428539 MS.gene40107:CDS 40.0%
GAAAAACGTGGAATTTGTGG+TGG + chr4.3:21429311-21429330 MS.gene40107:CDS 40.0%
GAAAACTCTTCTGCAGAATC+TGG + chr4.3:21429366-21429385 MS.gene40107:CDS 40.0%
GAAATTGCAAGAGAAGGTGA+AGG + chr4.3:21429263-21429282 MS.gene40107:CDS 40.0%
GAACCAATCATCTCATCCTT+AGG - chr4.3:21428753-21428772 None:intergenic 40.0%
GATTTCTCAAGGAACCTTTG+AGG + chr4.3:21428800-21428819 MS.gene40107:CDS 40.0%
GCAGTTTCCATTGAAGTTCT+AGG - chr4.3:21428642-21428661 None:intergenic 40.0%
GTGCAATTTGCAGATGGATA+TGG + chr4.3:21429762-21429781 MS.gene40107:intron 40.0%
TCTCACAGTGAACTCTTATG+AGG - chr4.3:21429449-21429468 None:intergenic 40.0%
TCTCCAAAAGCAGTACCTAT+TGG - chr4.3:21428579-21428598 None:intergenic 40.0%
TTATGATCTCTGCCTAATGC+AGG + chr4.3:21429045-21429064 MS.gene40107:intron 40.0%
! CTTTTGTAGTCCAGGAACAA+GGG - chr4.3:21428931-21428950 None:intergenic 40.0%
! TCAGCTACTATATGGTCTTG+AGG - chr4.3:21428861-21428880 None:intergenic 40.0%
!! GAAGTTCTAGGGTTGAAGTT+TGG - chr4.3:21428630-21428649 None:intergenic 40.0%
AACTCTTCTGCAGAATCTGG+TGG + chr4.3:21429369-21429388 MS.gene40107:CDS 45.0%
AGAGAAGGTGAAGGTTCTTG+AGG + chr4.3:21429272-21429291 MS.gene40107:CDS 45.0%
CCTTGTTCCTGGACTACAAA+AGG + chr4.3:21428929-21428948 MS.gene40107:CDS 45.0%
GAGTCTAACTCACTGCCAAT+AGG + chr4.3:21428561-21428580 MS.gene40107:CDS 45.0%
GATCTTGCAGGAAATGATGG+AGG + chr4.3:21428494-21428513 MS.gene40107:intron 45.0%
TCTTGAGGAAGAGAGAGCTT+AGG - chr4.3:21428846-21428865 None:intergenic 45.0%
! CCTTTTGTAGTCCAGGAACA+AGG - chr4.3:21428932-21428951 None:intergenic 45.0%
! GGAATTTTGCATGACGGTGA+AGG + chr4.3:21429783-21429802 MS.gene40107:CDS 45.0%
!! AGGAACCTTTGAGGCCAAAA+AGG + chr4.3:21428809-21428828 MS.gene40107:CDS 45.0%
!! AGGACGTGTTGCTACCTTTT+TGG - chr4.3:21428826-21428845 None:intergenic 45.0%
!! CTGCCAATAGGTACTGCTTT+TGG + chr4.3:21428573-21428592 MS.gene40107:CDS 45.0%
!! TGCTACCTTTTTGGCCTCAA+AGG - chr4.3:21428817-21428836 None:intergenic 45.0%
CAGATAGAGCAATGAAGCGC+TGG - chr4.3:21428908-21428927 None:intergenic 50.0%
GAAGGTGAAGGTTCTTGAGG+AGG + chr4.3:21429275-21429294 MS.gene40107:CDS 50.0%
TATCAGAGGGTTTCCTGAGC+AGG + chr4.3:21428274-21428293 MS.gene40107:CDS 50.0%
TCTGGCAGTTCCTCGTCAAA+GGG - chr4.3:21429396-21429415 None:intergenic 50.0%
TTCTGGCAGTTCCTCGTCAA+AGG - chr4.3:21429397-21429416 None:intergenic 50.0%
! GTTGGGATTGGTGAAGCCTA+AGG + chr4.3:21428734-21428753 MS.gene40107:CDS 50.0%
ATCTGGTGGTCCCTTTGACG+AGG + chr4.3:21429383-21429402 MS.gene40107:CDS 55.0%
GCTCTATCTGCCCTTGTTCC+TGG + chr4.3:21428918-21428937 MS.gene40107:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 21428257 21429849 21428257 ID=MS.gene40107
chr4.3 mRNA 21428257 21429849 21428257 ID=MS.gene40107.t1;Parent=MS.gene40107
chr4.3 exon 21428257 21428295 21428257 ID=MS.gene40107.t1.exon1;Parent=MS.gene40107.t1
chr4.3 CDS 21428257 21428295 21428257 ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3 exon 21428504 21428950 21428504 ID=MS.gene40107.t1.exon2;Parent=MS.gene40107.t1
chr4.3 CDS 21428504 21428950 21428504 ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3 exon 21429219 21429587 21429219 ID=MS.gene40107.t1.exon3;Parent=MS.gene40107.t1
chr4.3 CDS 21429219 21429587 21429219 ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
chr4.3 exon 21429775 21429849 21429775 ID=MS.gene40107.t1.exon4;Parent=MS.gene40107.t1
chr4.3 CDS 21429775 21429849 21429775 ID=cds.MS.gene40107.t1;Parent=MS.gene40107.t1
Gene Sequence

>MS.gene40107

ATGGAGAATATTTCATTTATCAGAGGGTTTCCTGAGCAGGTAAGACATATAGTTCTTGCAAATAGTTTTTCTCTGAACTTACTATACATTCATACTTTGGCAGTGACTAATTTTGGAACCATCTAACATTTGGTTAGAAAATAAGACAAGTATCTAATAATAAAAAAGAGAAGTAATCTAATAAAGGCACAAGGTAAATGCATGAAATTTCCATGAACATTGTGAAAACATGTGTTTGATCTTGCAGGAAATGATGGAGGATCCTTCATTTCTTCATCGTCAGTGGCATTTGAGCTCTATCAATGAGTCTAACTCACTGCCAATAGGTACTGCTTTTGGAGACACTTCACAACACCATTCATACGTTTATCCAAACTTCAACCCTAGAACTTCAATGGAAACTGCTCAGACACTAGAGACTCAATTTGTTCCGTACCCGAATCTTCTTTCATTTGTCGATTTGAATCAGTTAAATCAGTTGGGATTGGTGAAGCCTAAGGATGAGATGATTGGTTCTCAAAACAACAACACAACTTCTGACATGATTTCTCAAGGAACCTTTGAGGCCAAAAAGGTAGCAACACGTCCTAAGCTCTCTCTTCCTCAAGACCATATAGTAGCTGAAAGAAAGCGGCGTGAGAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAAAAGGTATACAATATTCGACTATTGCAAATTTGACATTTTATTTTGAACATGACTCAACTCTACAAAACAAATTTGTAAGGTGAAGATTGCATAGGCTTTATGATCTCTGCCTAATGCAGGACTTAAGTTTTTTCTCGATATCTATGTTGAACACATGTTGGATCATTTAGTGTTTACTATTAGTAGGACACACGGTGAATATATAATGTGTTTGTGGTACTTTCTTTAACAATTTTTGTCGTCTCGTTTTTCATTGTGCTACGACTAACAGATGGACAAAGTTACTGTTCTTGGAGATGCTATCAAGTACTTAAAGAAATTGCAAGAGAAGGTGAAGGTTCTTGAGGAGGAACAGAACATGAAGAAAAACGTGGAATTTGTGGTGGTTGTGAAGAAATATCAACTATCCAATGATGTTGAAAACTCTTCTGCAGAATCTGGTGGTCCCTTTGACGAGGAACTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAGTTCACTGTGAGAAAATAAAAGGAGTTGTGGAAAAAACAATCCATGAAATCGAGAAACTCAATCTAAAAGTCACCAATAGCAGTTTCATGACATTTGGGAGTTGTGCACTTGATATAACAATTATTGCACAGGTAATCTTTGTTTCAACAAAAGTATTGAATTAAGTTTCAGTAGTTATATTTTAAGACTTTTGACTACTTTAATGAAAAAACTTGCTTATTTACTGTATATCTATCTATGCATAATTTTCTATTATTTTGTTCCAACGAAATTACTACAATTGTCTATCAATATGGAAAATATTTGTGCAATTTGCAGATGGATATGGAATTTTGCATGACGGTGAAGGATCTTGTGAGAAACCTACGCTCAGTTTTTACGTCTTTCATCTAA
Protein sequence

>MS.gene40107.t1

MENISFIRGFPEQEMMEDPSFLHRQWHLSSINESNSLPIGTAFGDTSQHHSYVYPNFNPRTSMETAQTLETQFVPYPNLLSFVDLNQLNQLGLVKPKDEMIGSQNNNTTSDMISQGTFEAKKVATRPKLSLPQDHIVAERKRREKLSQRFIALSALVPGLQKMDKVTVLGDAIKYLKKLQEKVKVLEEEQNMKKNVEFVVVVKKYQLSNDVENSSAESGGPFDEELPEIEARFCDRNVLIRVHCEKIKGVVEKTIHEIEKLNLKVTNSSFMTFGSCALDITIIAQMDMEFCMTVKDLVRNLRSVFTSFI