Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40116.t1 | AES90515.1 | 98.3 | 303 | 5 | 0 | 1 | 303 | 17 | 319 | 2.10E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40116.t1 | Q9LPM9 | 66.1 | 298 | 98 | 2 | 6 | 302 | 18 | 313 | 4.7e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40116.t1 | G7JT01 | 98.3 | 303 | 5 | 0 | 1 | 303 | 17 | 319 | 1.5e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene40116 | -0.804306 | 2.30E-49 | -1.69E-46 |
| MS.gene053638 | MS.gene40116 | 0.898164 | 6.94E-77 | -1.69E-46 |
| MS.gene058382 | MS.gene40116 | 0.813283 | 2.77E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene40116 | 0.816722 | 4.78E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCATTGATTTGGGTTATA+AGG | 0.149101 | 4.3:-21676483 | MS.gene40116:intron |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | 4.3:+21677709 | None:intergenic |
| CATAGACATCGCCATTGATT+TGG | 0.259021 | 4.3:-21676492 | MS.gene40116:CDS |
| CATAATTTCCTCCACTGATA+TGG | 0.286519 | 4.3:+21676330 | None:intergenic |
| TGTTGCATCTGTAACATATA+AGG | 0.310394 | 4.3:-21676260 | MS.gene40116:CDS |
| GAAATTATGCTGACATCAAT+TGG | 0.320437 | 4.3:-21678544 | MS.gene40116:CDS |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4.3:-21677386 | MS.gene40116:CDS |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4.3:-21676761 | MS.gene40116:CDS |
| ATAGACATCGCCATTGATTT+GGG | 0.368721 | 4.3:-21676491 | MS.gene40116:CDS |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | 4.3:+21677288 | None:intergenic |
| AGGCCTTTGCTGATGGGAAC+AGG | 0.410408 | 4.3:-21677366 | MS.gene40116:CDS |
| GCTGCTGGTATCATAAACTA+TGG | 0.421561 | 4.3:-21678404 | MS.gene40116:CDS |
| TATTTATAGGGAATCTTTGA+GGG | 0.423848 | 4.3:-21677881 | MS.gene40116:intron |
| TTATTTATAGGGAATCTTTG+AGG | 0.451052 | 4.3:-21677882 | MS.gene40116:intron |
| TTATCTTAGGCCTTTGCTGA+TGG | 0.459569 | 4.3:-21677373 | MS.gene40116:CDS |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4.3:-21677095 | MS.gene40116:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4.3:+21678438 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4.3:+21677825 | None:intergenic |
| TATCTTAGGCCTTTGCTGAT+GGG | 0.462963 | 4.3:-21677372 | MS.gene40116:CDS |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | 4.3:-21678482 | MS.gene40116:CDS |
| AGAATAGATCCATCTATTGC+CGG | 0.463647 | 4.3:+21676539 | None:intergenic |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4.3:-21677303 | MS.gene40116:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4.3:-21677408 | MS.gene40116:intron |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4.3:+21677841 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4.3:-21677717 | MS.gene40116:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4.3:-21677804 | MS.gene40116:CDS |
| ATCAATGGCGATGTCTATGA+TGG | 0.477143 | 4.3:+21676496 | None:intergenic |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4.3:+21677390 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4.3:-21677854 | MS.gene40116:CDS |
| TGTACTCAGGTGATGGAGCC+GGG | 0.495014 | 4.3:+21677331 | None:intergenic |
| AACAGGAGCTGCATTAGGCC+CGG | 0.496200 | 4.3:-21677349 | MS.gene40116:CDS |
| ATAGATGGATCTATTCTGCC+TGG | 0.500850 | 4.3:-21676533 | MS.gene40116:CDS |
| TACCTTATAACCCAAATCAA+TGG | 0.507754 | 4.3:+21676481 | None:intergenic |
| GTGTACTCAGGTGATGGAGC+CGG | 0.507861 | 4.3:+21677330 | None:intergenic |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4.3:-21677803 | MS.gene40116:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4.3:+21677812 | None:intergenic |
| ATGGGAACAGGAGCTGCATT+AGG | 0.526658 | 4.3:-21677354 | MS.gene40116:CDS |
| TAGATGGATCTATTCTGCCT+GGG | 0.527089 | 4.3:-21676532 | MS.gene40116:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4.3:-21677101 | MS.gene40116:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4.3:-21677401 | MS.gene40116:CDS |
| AAATTATGCTGACATCAATT+GGG | 0.535395 | 4.3:-21678543 | MS.gene40116:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | 4.3:+21678497 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4.3:-21677402 | MS.gene40116:CDS |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4.3:-21678446 | MS.gene40116:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4.3:-21677110 | MS.gene40116:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4.3:+21678407 | None:intergenic |
| CGGAAGACTAAACTTAAAAG+TGG | 0.556487 | 4.3:-21677138 | MS.gene40116:CDS |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4.3:+21677396 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4.3:-21678419 | MS.gene40116:CDS |
| TCAACAAACTGCTCAACTGA+TGG | 0.571107 | 4.3:+21677755 | None:intergenic |
| CTGTAACATATAAGGAAACA+AGG | 0.572784 | 4.3:-21676252 | None:intergenic |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4.3:+21676781 | None:intergenic |
| TGGTATCATAAACTATGGAC+AGG | 0.579973 | 4.3:-21678399 | MS.gene40116:intron |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4.3:+21677318 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4.3:-21676797 | MS.gene40116:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4.3:-21677802 | MS.gene40116:CDS |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4.3:+21678408 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4.3:-21678426 | MS.gene40116:CDS |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4.3:-21677092 | MS.gene40116:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4.3:-21677853 | MS.gene40116:CDS |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4.3:-21677104 | MS.gene40116:CDS |
| GCTCCTGTTCCCATCAGCAA+AGG | 0.605225 | 4.3:+21677363 | None:intergenic |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4.3:-21676714 | MS.gene40116:intron |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4.3:-21676341 | MS.gene40116:CDS |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4.3:+21677324 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4.3:-21676304 | MS.gene40116:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | 4.3:-21678539 | MS.gene40116:CDS |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4.3:-21677718 | MS.gene40116:CDS |
| AACTGCTCAACTGATGGTGA+TGG | 0.617477 | 4.3:+21677761 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4.3:+21678439 | None:intergenic |
| AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | 4.3:-21677135 | MS.gene40116:CDS |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4.3:-21677063 | MS.gene40116:intron |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4.3:-21677801 | MS.gene40116:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | 4.3:-21677407 | MS.gene40116:intron |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4.3:-21676338 | MS.gene40116:CDS |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4.3:+21677816 | None:intergenic |
| AGATGGATCTATTCTGCCTG+GGG | 0.660994 | 4.3:-21676531 | MS.gene40116:CDS |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | 4.3:+21677289 | None:intergenic |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4.3:+21677393 | None:intergenic |
| ATATGTTACAGATGCAACAG+AGG | 0.681902 | 4.3:+21676264 | None:intergenic |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | 4.3:+21677290 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | 4.3:-21677289 | MS.gene40116:intron |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4.3:-21676293 | MS.gene40116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATATATAAAGTAAACTT+GGG | - | chr4.3:21676755-21676774 | MS.gene40116:CDS | 15.0% |
| !! | ATATATAATATTCAATTTGG+AGG | + | chr4.3:21677830-21677849 | None:intergenic | 15.0% |
| !! | TACTATATATAAAGTAAACT+TGG | - | chr4.3:21676754-21676773 | MS.gene40116:CDS | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | - | chr4.3:21678399-21678418 | MS.gene40116:intron | 15.0% |
| !!! | AAAATGGTTTCTTTATTTAT+AGG | - | chr4.3:21676914-21676933 | MS.gene40116:intron | 15.0% |
| !!! | AAATGGTTTCTTTATTTATA+GGG | - | chr4.3:21676915-21676934 | MS.gene40116:intron | 15.0% |
| !!! | TGAATATTATATATTTTCCT+TGG | - | chr4.3:21677836-21677855 | MS.gene40116:CDS | 15.0% |
| !! | AAAATAAAAATTTAACAGGG+CGG | - | chr4.3:21677650-21677669 | MS.gene40116:intron | 20.0% |
| !! | AGAAAATAATGACAAACATT+GGG | + | chr4.3:21678366-21678385 | None:intergenic | 20.0% |
| !! | CTATATATAAAGTAAACTTG+GGG | - | chr4.3:21676756-21676775 | MS.gene40116:CDS | 20.0% |
| !! | GTTTCATATTAATCTTGTTA+AGG | - | chr4.3:21678229-21678248 | MS.gene40116:intron | 20.0% |
| !! | TAGAAAATAATGACAAACAT+TGG | + | chr4.3:21678367-21678386 | None:intergenic | 20.0% |
| !! | TATAAGTAAATTCAAATCCA+TGG | + | chr4.3:21677549-21677568 | None:intergenic | 20.0% |
| !! | TATATATAAAGTAAACTTGG+GGG | - | chr4.3:21676757-21676776 | MS.gene40116:CDS | 20.0% |
| !! | TTATATTACAGTCACAATTA+CGG | - | chr4.3:21676587-21676606 | MS.gene40116:intron | 20.0% |
| !!! | CTTATATTGTTTTGTTACTA+AGG | - | chr4.3:21677563-21677582 | MS.gene40116:intron | 20.0% |
| ! | AAATTATGCTGACATCAATT+GGG | - | chr4.3:21676265-21676284 | MS.gene40116:CDS | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | - | chr4.3:21677321-21677340 | MS.gene40116:CDS | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | + | chr4.3:21677321-21677340 | None:intergenic | 25.0% |
| ! | TATTTATAGGGAATCTTTGA+GGG | - | chr4.3:21676927-21676946 | MS.gene40116:intron | 25.0% |
| ! | TGTCTAAAAATGCACTAAAA+TGG | - | chr4.3:21676898-21676917 | MS.gene40116:intron | 25.0% |
| ! | TTATTTATAGGGAATCTTTG+AGG | - | chr4.3:21676926-21676945 | MS.gene40116:intron | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | - | chr4.3:21678443-21678462 | MS.gene40116:CDS | 25.0% |
| !! | AATGATGCATATTGTTACTT+AGG | - | chr4.3:21677908-21677927 | MS.gene40116:intron | 25.0% |
| !! | AATTTAAAACCATCGTACAA+GGG | + | chr4.3:21676467-21676486 | None:intergenic | 25.0% |
| !! | CTGTAATATAACGAATTTTG+AGG | + | chr4.3:21676578-21676597 | None:intergenic | 25.0% |
| !!! | ACTAACTTTCATGTTTTAAC+AGG | + | chr4.3:21676673-21676692 | None:intergenic | 25.0% |
| !!! | TTAGTGCATTTTTAGACATT+TGG | + | chr4.3:21676896-21676915 | None:intergenic | 25.0% |
| AAATAATGACAAACATTGGG+AGG | + | chr4.3:21678363-21678382 | None:intergenic | 30.0% | |
| AAATTTCATCGATCAATAGC+TGG | - | chr4.3:21677698-21677717 | MS.gene40116:intron | 30.0% | |
| AACTGGAAAAAATATTGAGG+AGG | - | chr4.3:21678064-21678083 | MS.gene40116:intron | 30.0% | |
| AAGACTAAACTTAAAAGTGG+AGG | - | chr4.3:21677673-21677692 | MS.gene40116:intron | 30.0% | |
| AATAATGACAAACATTGGGA+GGG | + | chr4.3:21678362-21678381 | None:intergenic | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | + | chr4.3:21677102-21677121 | None:intergenic | 30.0% | |
| ACTATATCCGAAGCAAAAAT+TGG | - | chr4.3:21678194-21678213 | MS.gene40116:intron | 30.0% | |
| AGCAACTGGAAAAAATATTG+AGG | - | chr4.3:21678061-21678080 | MS.gene40116:intron | 30.0% | |
| CTTAAGTGTAAAGTAGTACA+AGG | + | chr4.3:21676638-21676657 | None:intergenic | 30.0% | |
| GAAATTATGCTGACATCAAT+TGG | - | chr4.3:21676264-21676283 | MS.gene40116:CDS | 30.0% | |
| GCTTCGGATATAGTAAAATA+TGG | + | chr4.3:21678188-21678207 | None:intergenic | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | + | chr4.3:21677493-21677512 | None:intergenic | 30.0% | |
| TACCTTATAACCCAAATCAA+TGG | + | chr4.3:21678330-21678349 | None:intergenic | 30.0% | |
| TGAGCTTTCAAAATTGAAAC+AGG | - | chr4.3:21677387-21677406 | MS.gene40116:CDS | 30.0% | |
| TGTTGCATCTGTAACATATA+AGG | - | chr4.3:21678548-21678567 | MS.gene40116:CDS | 30.0% | |
| ! | AAAGGAGAAAAGTTTTCACA+AGG | - | chr4.3:21676344-21676363 | MS.gene40116:CDS | 30.0% |
| ! | CAATTTAAAACCATCGTACA+AGG | + | chr4.3:21676468-21676487 | None:intergenic | 30.0% |
| ! | CATTAGACCAATTTTTGCTT+CGG | + | chr4.3:21678204-21678223 | None:intergenic | 30.0% |
| ! | GGAAAATGATATTTTCACTC+CGG | - | chr4.3:21678250-21678269 | MS.gene40116:intron | 30.0% |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | - | chr4.3:21678034-21678053 | MS.gene40116:intron | 30.0% |
| !! | GTGCAATATATTTGTTGTGA+AGG | - | chr4.3:21678094-21678113 | MS.gene40116:intron | 30.0% |
| !! | GTTACACTGGTTTATATTGT+TGG | - | chr4.3:21676502-21676521 | MS.gene40116:CDS | 30.0% |
| !!! | ATGGTTTTAAATTGAGGTTG+CGG | - | chr4.3:21676474-21676493 | MS.gene40116:intron | 30.0% |
| !!! | TGTACGATGGTTTTAAATTG+AGG | - | chr4.3:21676468-21676487 | MS.gene40116:intron | 30.0% |
| AAAGCATATAGAACCGAAGA+TGG | - | chr4.3:21676954-21676973 | MS.gene40116:intron | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | - | chr4.3:21676955-21676974 | MS.gene40116:intron | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | + | chr4.3:21676372-21676391 | None:intergenic | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | + | chr4.3:21678272-21678291 | None:intergenic | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | - | chr4.3:21677091-21677110 | MS.gene40116:CDS | 35.0% | |
| ATATGTTACAGATGCAACAG+AGG | + | chr4.3:21678547-21678566 | None:intergenic | 35.0% | |
| ATCGCCAAAAACTTATGTTG+TGG | - | chr4.3:21677276-21677295 | MS.gene40116:intron | 35.0% | |
| ATGACATGCATGTAATCTGT+TGG | + | chr4.3:21676314-21676333 | None:intergenic | 35.0% | |
| ATTACAGTCACAATTACGGT+TGG | - | chr4.3:21676591-21676610 | MS.gene40116:intron | 35.0% | |
| CAAGACATCAGAAAATCCAT+TGG | + | chr4.3:21678030-21678049 | None:intergenic | 35.0% | |
| CATAATTTCCTCCACTGATA+TGG | + | chr4.3:21678481-21678500 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | - | chr4.3:21676326-21676345 | MS.gene40116:CDS | 35.0% | |
| CATTGCGATATTTCATATCG+TGG | - | chr4.3:21677199-21677218 | MS.gene40116:intron | 35.0% | |
| CGGAAGACTAAACTTAAAAG+TGG | - | chr4.3:21677670-21677689 | MS.gene40116:intron | 35.0% | |
| GAGGAAAAAACACCATCAAA+CGG | + | chr4.3:21677811-21677830 | None:intergenic | 35.0% | |
| TCATATACATCACCGTTTGA+TGG | - | chr4.3:21677796-21677815 | MS.gene40116:CDS | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | - | chr4.3:21676409-21676428 | MS.gene40116:intron | 35.0% | |
| TTGAGAAGAAATCACATCGA+AGG | - | chr4.3:21677885-21677904 | MS.gene40116:intron | 35.0% | |
| TTTCCTCTTATCTCTCTTTG+TGG | - | chr4.3:21677120-21677139 | MS.gene40116:CDS | 35.0% | |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | - | chr4.3:21677860-21677879 | MS.gene40116:CDS | 35.0% |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | - | chr4.3:21677859-21677878 | MS.gene40116:CDS | 35.0% |
| !! | ATAGACATCGCCATTGATTT+GGG | - | chr4.3:21678317-21678336 | MS.gene40116:intron | 35.0% |
| AATGCTCTACGCATGAAGAT+GGG | - | chr4.3:21677005-21677024 | MS.gene40116:intron | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | + | chr4.3:21677487-21677506 | None:intergenic | 40.0% | |
| AGACCACAAAGAGAGATAAG+AGG | + | chr4.3:21677126-21677145 | None:intergenic | 40.0% | |
| AGTCTAATCAGCTTCATGCA+TGG | - | chr4.3:21677150-21677169 | MS.gene40116:intron | 40.0% | |
| ATAGATGGATCTATTCTGCC+TGG | - | chr4.3:21678275-21678294 | MS.gene40116:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | + | chr4.3:21678315-21678334 | None:intergenic | 40.0% | |
| ATCACTATTGCCATGCATAC+CGG | + | chr4.3:21677767-21677786 | None:intergenic | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | + | chr4.3:21676373-21676392 | None:intergenic | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | - | chr4.3:21677090-21677109 | MS.gene40116:CDS | 40.0% | |
| CATAGAACGTTCCATATCAG+TGG | - | chr4.3:21678467-21678486 | MS.gene40116:CDS | 40.0% | |
| GACAGATGCAGCTTCAATTT+CGG | - | chr4.3:21677231-21677250 | MS.gene40116:intron | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | - | chr4.3:21676404-21676423 | MS.gene40116:intron | 40.0% | |
| GTAACTGAAGCAAAAGCCAA+TGG | - | chr4.3:21678011-21678030 | MS.gene40116:intron | 40.0% | |
| GTTGAAATACCCTTGTACGA+TGG | - | chr4.3:21676455-21676474 | MS.gene40116:intron | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | - | chr4.3:21678276-21678295 | MS.gene40116:intron | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | + | chr4.3:21676404-21676423 | None:intergenic | 40.0% | |
| TATCTTAGGCCTTTGCTGAT+GGG | - | chr4.3:21677436-21677455 | MS.gene40116:intron | 40.0% | |
| TATGCTGACATCAATTGGGA+AGG | - | chr4.3:21676269-21676288 | MS.gene40116:CDS | 40.0% | |
| TCAACAAACTGCTCAACTGA+TGG | + | chr4.3:21677056-21677075 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | - | chr4.3:21676382-21676401 | MS.gene40116:intron | 40.0% | |
| TTATCTTAGGCCTTTGCTGA+TGG | - | chr4.3:21677435-21677454 | MS.gene40116:intron | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | - | chr4.3:21678047-21678066 | MS.gene40116:intron | 40.0% | |
| ! | AGGGCCACAACATAAGTTTT+TGG | + | chr4.3:21677283-21677302 | None:intergenic | 40.0% |
| ! | ATTTTCACTCCGGCAATAGA+TGG | - | chr4.3:21678260-21678279 | MS.gene40116:intron | 40.0% |
| ! | CATAGACATCGCCATTGATT+TGG | - | chr4.3:21678316-21678335 | MS.gene40116:intron | 40.0% |
| ! | CTTTTCACAAGTCACAACCA+AGG | + | chr4.3:21677856-21677875 | None:intergenic | 40.0% |
| ! | GAGTGTTACTAATTATGCCC+CGG | - | chr4.3:21677745-21677764 | MS.gene40116:CDS | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | - | chr4.3:21678325-21678344 | MS.gene40116:intron | 40.0% |
| !! | TCATGCATGGTTTTACGTTG+CGG | - | chr4.3:21677163-21677182 | MS.gene40116:intron | 40.0% |
| !!! | AGTTTTTGGCGATCTCCAAA+AGG | + | chr4.3:21677269-21677288 | None:intergenic | 40.0% |
| AAGAAGGATTCGCCCATCTT+CGG | + | chr4.3:21676970-21676989 | None:intergenic | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | - | chr4.3:21678470-21678489 | MS.gene40116:CDS | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | - | chr4.3:21678277-21678296 | MS.gene40116:intron | 45.0% | |
| AGTAAACTTGGGGGATACCA+TGG | - | chr4.3:21676766-21676785 | MS.gene40116:CDS | 45.0% | |
| AGTTTATGATACCAGCAGCC+GGG | + | chr4.3:21676403-21676422 | None:intergenic | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | - | chr4.3:21677006-21677025 | MS.gene40116:intron | 45.0% | |
| CAAACACACCCTATATCCAG+TGG | + | chr4.3:21676818-21676837 | None:intergenic | 45.0% | |
| CAAGTTCTCAGTTGTTGCAG+TGG | + | chr4.3:21676716-21676735 | None:intergenic | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | - | chr4.3:21677505-21677524 | MS.gene40116:intron | 45.0% | |
| GAATGCTCTACGCATGAAGA+TGG | - | chr4.3:21677004-21677023 | MS.gene40116:intron | 45.0% | |
| GACTGATGCAGTCAAAACTG+CGG | - | chr4.3:21676532-21676551 | MS.gene40116:CDS | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | - | chr4.3:21677422-21677441 | MS.gene40116:intron | 45.0% | |
| GGTTGCGGTTATTGTTACAC+TGG | - | chr4.3:21676489-21676508 | MS.gene40116:CDS | 45.0% | |
| TAATTATGCCCCGGTATGCA+TGG | - | chr4.3:21677754-21677773 | MS.gene40116:CDS | 45.0% | |
| TAGATCCGCCACTGGATATA+GGG | - | chr4.3:21676807-21676826 | MS.gene40116:CDS | 45.0% | |
| TCACTATTGCCATGCATACC+GGG | + | chr4.3:21677766-21677785 | None:intergenic | 45.0% | |
| TTATGTTGTGGCCCTAACAG+TGG | - | chr4.3:21677288-21677307 | MS.gene40116:intron | 45.0% | |
| ! | AACTGCTCAACTGATGGTGA+TGG | + | chr4.3:21677050-21677069 | None:intergenic | 45.0% |
| ! | AATCCTTCTTTTCCGACCAG+AGG | - | chr4.3:21676980-21676999 | MS.gene40116:intron | 45.0% |
| ! | CGGTTGCGATTTTCACCTTT+TGG | - | chr4.3:21677251-21677270 | MS.gene40116:intron | 45.0% |
| !! | AAAAAAAATAAAAATTTAAC+AGG | - | chr4.3:21677646-21677665 | MS.gene40116:intron | 5.0% |
| !! | AAAAAAATAAAAATTTAACA+GGG | - | chr4.3:21677647-21677666 | MS.gene40116:intron | 5.0% |
| !! | AAAATATATAATATTCAATT+TGG | + | chr4.3:21677833-21677852 | None:intergenic | 5.0% |
| !!! | TTTTTTAAAATTAAAAAAGA+AGG | + | chr4.3:21677632-21677651 | None:intergenic | 5.0% |
| ACACACCCTATATCCAGTGG+CGG | + | chr4.3:21676815-21676834 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | + | chr4.3:21677523-21677542 | None:intergenic | 50.0% | |
| ATGGGAACAGGAGCTGCATT+AGG | - | chr4.3:21677454-21677473 | MS.gene40116:intron | 50.0% | |
| CAAGGATCCCTCATTCGCTA+TGG | - | chr4.3:21676362-21676381 | MS.gene40116:intron | 50.0% | |
| CACTATTGCCATGCATACCG+GGG | + | chr4.3:21677765-21677784 | None:intergenic | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | - | chr4.3:21677704-21677723 | MS.gene40116:intron | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | + | chr4.3:21677522-21677541 | None:intergenic | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | + | chr4.3:21677521-21677540 | None:intergenic | 50.0% | |
| GCGGTTCAGAACCACTGTTA+GGG | + | chr4.3:21677302-21677321 | None:intergenic | 50.0% | |
| GTAGATCCGCCACTGGATAT+AGG | - | chr4.3:21676806-21676825 | MS.gene40116:CDS | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | + | chr4.3:21676986-21677005 | None:intergenic | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | - | chr4.3:21677401-21677420 | MS.gene40116:CDS | 50.0% | |
| TGCGGTTCAGAACCACTGTT+AGG | + | chr4.3:21677303-21677322 | None:intergenic | 50.0% | |
| TGCTCTACGCATGAAGATGG+GGG | - | chr4.3:21677007-21677026 | MS.gene40116:intron | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | - | chr4.3:21677400-21677419 | MS.gene40116:CDS | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | + | chr4.3:21677421-21677440 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | + | chr4.3:21676999-21677018 | None:intergenic | 50.0% |
| ! | ATGGATTTTCGTGTGACCCC+AGG | + | chr4.3:21678296-21678315 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | - | chr4.3:21678504-21678523 | MS.gene40116:CDS | 50.0% |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | + | chr4.3:21676995-21677014 | None:intergenic | 50.0% |
| !! | ATCCAGTGGCGGATCTACTT+GGG | + | chr4.3:21676804-21676823 | None:intergenic | 50.0% |
| !! | TATCCAGTGGCGGATCTACT+TGG | + | chr4.3:21676805-21676824 | None:intergenic | 50.0% |
| AACAGGAGCTGCATTAGGCC+CGG | - | chr4.3:21677459-21677478 | MS.gene40116:intron | 55.0% | |
| AAGTACCACGAGGTCAGCCA+TGG | - | chr4.3:21677529-21677548 | MS.gene40116:intron | 55.0% | |
| AGGCCTTTGCTGATGGGAAC+AGG | - | chr4.3:21677442-21677461 | MS.gene40116:intron | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | - | chr4.3:21677407-21677426 | MS.gene40116:intron | 55.0% | |
| ATTGAGATAAGCCCGGCTGC+TGG | - | chr4.3:21676389-21676408 | MS.gene40116:intron | 55.0% | |
| CAAATCCATGGCTGACCTCG+TGG | + | chr4.3:21677537-21677556 | None:intergenic | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | - | chr4.3:21677707-21677726 | MS.gene40116:intron | 55.0% | |
| GCATGAAGATGGGGGCTGAT+AGG | - | chr4.3:21677015-21677034 | MS.gene40116:intron | 55.0% | |
| GCTCCTGTTCCCATCAGCAA+AGG | + | chr4.3:21677448-21677467 | None:intergenic | 55.0% | |
| GGATCTACTTGGGGACCCAT+GGG | + | chr4.3:21676794-21676813 | None:intergenic | 55.0% | |
| GTTCTGCACAGGAACTGCAG+TGG | - | chr4.3:21678515-21678534 | MS.gene40116:CDS | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | - | chr4.3:21677713-21677732 | MS.gene40116:intron | 55.0% |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | + | chr4.3:21677418-21677437 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | - | chr4.3:21677519-21677538 | MS.gene40116:intron | 55.0% |
| !! | GTGTACTCAGGTGATGGAGC+CGG | + | chr4.3:21677481-21677500 | None:intergenic | 55.0% |
| !! | TCCAGTGGCGGATCTACTTG+GGG | + | chr4.3:21676803-21676822 | None:intergenic | 55.0% |
| !! | TGTACTCAGGTGATGGAGCC+GGG | + | chr4.3:21677480-21677499 | None:intergenic | 55.0% |
| CAGGTACCTCCTCCAGGGAA+AGG | - | chr4.3:21677406-21677425 | MS.gene40116:intron | 60.0% | |
| CGGATCTACTTGGGGACCCA+TGG | + | chr4.3:21676795-21676814 | None:intergenic | 60.0% | |
| GGGGATACCATGGCTCCCAT+GGG | - | chr4.3:21676776-21676795 | MS.gene40116:CDS | 60.0% | |
| TCCCCAAGTAGATCCGCCAC+TGG | - | chr4.3:21676799-21676818 | MS.gene40116:CDS | 60.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | + | chr4.3:21677415-21677434 | None:intergenic | 65.0% | |
| GGGGGATACCATGGCTCCCA+TGG | - | chr4.3:21676775-21676794 | MS.gene40116:CDS | 65.0% | |
| TTGGGGACCCATGGGAGCCA+TGG | + | chr4.3:21676786-21676805 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | - | chr4.3:21677716-21677735 | MS.gene40116:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21676253 | 21678577 | 21676253 | ID=MS.gene40116 |
| chr4.3 | mRNA | 21676253 | 21678577 | 21676253 | ID=MS.gene40116.t1;Parent=MS.gene40116 |
| chr4.3 | exon | 21678400 | 21678577 | 21678400 | ID=MS.gene40116.t1.exon1;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21678400 | 21678577 | 21678400 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21677718 | 21677894 | 21677718 | ID=MS.gene40116.t1.exon2;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21677718 | 21677894 | 21677718 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21677290 | 21677421 | 21677290 | ID=MS.gene40116.t1.exon3;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21677290 | 21677421 | 21677290 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21677064 | 21677162 | 21677064 | ID=MS.gene40116.t1.exon4;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21677064 | 21677162 | 21677064 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21676715 | 21676831 | 21676715 | ID=MS.gene40116.t1.exon5;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21676715 | 21676831 | 21676715 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21676484 | 21676579 | 21676484 | ID=MS.gene40116.t1.exon6;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21676484 | 21676579 | 21676484 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| chr4.3 | exon | 21676253 | 21676365 | 21676253 | ID=MS.gene40116.t1.exon7;Parent=MS.gene40116.t1 |
| chr4.3 | CDS | 21676253 | 21676365 | 21676253 | ID=cds.MS.gene40116.t1;Parent=MS.gene40116.t1 |
| Gene Sequence |
| Protein sequence |
