Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053638.t1 | AES90515.1 | 97.4 | 340 | 9 | 0 | 1 | 340 | 18 | 357 | 4.60E-187 | 663.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053638.t1 | Q9LPM9 | 63.7 | 339 | 120 | 2 | 3 | 340 | 16 | 352 | 7.9e-127 | 454.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053638.t1 | G7JT01 | 97.4 | 340 | 9 | 0 | 1 | 340 | 18 | 357 | 3.3e-187 | 663.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053638 | MS.gene073297 | 0.806648 | 7.43E-50 | -1.69E-46 |
| MS.gene053638 | MS.gene40116 | 0.898164 | 6.94E-77 | -1.69E-46 |
| MS.gene053638 | MS.gene40459 | 0.905473 | 4.13E-80 | -1.69E-46 |
| MS.gene053638 | MS.gene96335 | 0.804552 | 2.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015287 | MS.gene053638 | PPI |
| MS.gene053638 | MS.gene09632 | PPI |
| MS.gene21440 | MS.gene053638 | PPI |
| MS.gene43507 | MS.gene053638 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053638.t1 | MTR_4g092590 | 97.353 | 340 | 9 | 0 | 1 | 340 | 18 | 357 | 0.0 | 679 |
| MS.gene053638.t1 | MTR_3g103580 | 60.000 | 340 | 132 | 2 | 3 | 340 | 50 | 387 | 5.51e-155 | 440 |
| MS.gene053638.t1 | MTR_5g014960 | 60.417 | 336 | 129 | 2 | 6 | 339 | 74 | 407 | 1.78e-149 | 427 |
| MS.gene053638.t1 | MTR_3g103580 | 61.111 | 324 | 122 | 2 | 19 | 340 | 2 | 323 | 1.80e-149 | 424 |
| MS.gene053638.t1 | MTR_4g092580 | 55.917 | 338 | 145 | 2 | 5 | 340 | 22 | 357 | 7.13e-142 | 405 |
| MS.gene053638.t1 | MTR_3g103580 | 61.056 | 303 | 114 | 2 | 3 | 303 | 50 | 350 | 8.98e-141 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053638.t1 | AT1G50110 | 63.717 | 339 | 120 | 2 | 3 | 340 | 16 | 352 | 9.46e-165 | 464 |
| MS.gene053638.t1 | AT1G50090 | 62.242 | 339 | 125 | 2 | 3 | 340 | 19 | 355 | 2.38e-160 | 453 |
| MS.gene053638.t1 | AT1G10070 | 60.651 | 338 | 129 | 2 | 5 | 340 | 53 | 388 | 1.83e-158 | 449 |
| MS.gene053638.t1 | AT1G10070 | 60.651 | 338 | 129 | 2 | 5 | 340 | 53 | 388 | 1.83e-158 | 449 |
| MS.gene053638.t1 | AT1G50110 | 63.950 | 319 | 112 | 2 | 23 | 340 | 1 | 317 | 3.67e-154 | 436 |
| MS.gene053638.t1 | AT1G10060 | 60.767 | 339 | 129 | 2 | 3 | 339 | 47 | 383 | 6.98e-152 | 432 |
| MS.gene053638.t1 | AT1G10060 | 61.062 | 339 | 128 | 2 | 3 | 339 | 143 | 479 | 1.60e-150 | 432 |
| MS.gene053638.t1 | AT5G65780 | 59.941 | 337 | 130 | 3 | 6 | 339 | 80 | 414 | 3.87e-149 | 426 |
| MS.gene053638.t1 | AT1G10070 | 60.938 | 320 | 121 | 2 | 23 | 340 | 1 | 318 | 6.83e-149 | 422 |
| MS.gene053638.t1 | AT3G19710 | 56.047 | 339 | 146 | 2 | 3 | 340 | 15 | 351 | 7.05e-148 | 421 |
| MS.gene053638.t1 | AT3G49680 | 60.177 | 339 | 129 | 4 | 6 | 340 | 77 | 413 | 1.15e-147 | 422 |
| MS.gene053638.t1 | AT3G49680 | 60.177 | 339 | 129 | 4 | 6 | 340 | 75 | 411 | 1.59e-147 | 422 |
| MS.gene053638.t1 | AT1G10060 | 61.442 | 319 | 119 | 2 | 23 | 339 | 1 | 317 | 1.33e-142 | 406 |
| MS.gene053638.t1 | AT1G10060 | 61.842 | 304 | 112 | 2 | 3 | 304 | 47 | 348 | 3.33e-136 | 392 |
| MS.gene053638.t1 | AT1G10060 | 62.171 | 304 | 111 | 2 | 3 | 304 | 143 | 444 | 6.41e-135 | 392 |
| MS.gene053638.t1 | AT1G10060 | 60.714 | 252 | 95 | 2 | 3 | 252 | 47 | 296 | 2.77e-110 | 323 |
| MS.gene053638.t1 | AT1G10060 | 60.714 | 252 | 95 | 2 | 3 | 252 | 143 | 392 | 6.28e-109 | 323 |
Find 92 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCATTGATTTGGGTTATA+AGG | 0.149101 | 4.4:-21807476 | MS.gene053638:intron |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | 4.4:+21808702 | None:intergenic |
| CATAGACATCGCCATTGATT+TGG | 0.259021 | 4.4:-21807485 | MS.gene053638:CDS |
| CATAATTTCCTCCACTGATA+TGG | 0.286519 | 4.4:+21807323 | None:intergenic |
| TGTTGCATCTGTAACATATA+AGG | 0.310394 | 4.4:-21807253 | MS.gene053638:CDS |
| AAAATTATGCTGACATCAAT+TGG | 0.313617 | 4.4:-21809539 | MS.gene053638:CDS |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4.4:-21808379 | MS.gene053638:CDS |
| ATCTTCACTCCGGCAATAGA+TGG | 0.342656 | 4.4:-21807541 | MS.gene053638:CDS |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4.4:-21807754 | MS.gene053638:CDS |
| ATAGACATCGCCATTGATTT+GGG | 0.368721 | 4.4:-21807484 | MS.gene053638:CDS |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | 4.4:+21808281 | None:intergenic |
| AGGCCTTTGCTGATGGGAAC+AGG | 0.410408 | 4.4:-21808359 | MS.gene053638:CDS |
| GCTGCTGGTATCATAAACTA+TGG | 0.421561 | 4.4:-21809399 | MS.gene053638:CDS |
| TATTTATAGGGAATCTTTGA+GGG | 0.423848 | 4.4:-21808874 | MS.gene053638:intron |
| TGCCAATTTCTCAATCTACT+TGG | 0.427171 | 4.4:+21806976 | None:intergenic |
| TTATTTATAGGGAATCTTTG+AGG | 0.451052 | 4.4:-21808875 | MS.gene053638:intron |
| ATACTGGATGGAATACAAAC+AGG | 0.454406 | 4.4:-21807029 | MS.gene053638:CDS |
| TTATCTTAGGCCTTTGCTGA+TGG | 0.459569 | 4.4:-21808366 | MS.gene053638:CDS |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4.4:-21808088 | MS.gene053638:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4.4:+21809433 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4.4:+21808818 | None:intergenic |
| TATCTTAGGCCTTTGCTGAT+GGG | 0.462963 | 4.4:-21808365 | MS.gene053638:CDS |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | 4.4:-21809477 | MS.gene053638:CDS |
| AGAATAGATCCATCTATTGC+CGG | 0.463647 | 4.4:+21807532 | None:intergenic |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4.4:-21808296 | MS.gene053638:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4.4:-21808401 | MS.gene053638:intron |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4.4:+21808834 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4.4:-21808710 | MS.gene053638:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4.4:-21808797 | MS.gene053638:CDS |
| ATCAATGGCGATGTCTATGA+TGG | 0.477143 | 4.4:+21807489 | None:intergenic |
| TGCAGAGCTGAATATAAAAC+AGG | 0.487998 | 4.4:-21807083 | MS.gene053638:intron |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4.4:+21808383 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4.4:-21808847 | MS.gene053638:CDS |
| TGTACTCAGGTGATGGAGCC+GGG | 0.495014 | 4.4:+21808324 | None:intergenic |
| AACAGGAGCTGCATTAGGCC+CGG | 0.496200 | 4.4:-21808342 | MS.gene053638:CDS |
| ATAGATGGATCTATTCTGCC+TGG | 0.500850 | 4.4:-21807526 | MS.gene053638:CDS |
| TACCTTATAACCCAAATCAA+TGG | 0.507754 | 4.4:+21807474 | None:intergenic |
| GTGTACTCAGGTGATGGAGC+CGG | 0.507861 | 4.4:+21808323 | None:intergenic |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4.4:-21808796 | MS.gene053638:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4.4:+21808805 | None:intergenic |
| ATGGGAACAGGAGCTGCATT+AGG | 0.526658 | 4.4:-21808347 | MS.gene053638:CDS |
| TAGATGGATCTATTCTGCCT+GGG | 0.527089 | 4.4:-21807525 | MS.gene053638:CDS |
| AAATTATGCTGACATCAATT+GGG | 0.528575 | 4.4:-21809538 | MS.gene053638:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4.4:-21808094 | MS.gene053638:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4.4:-21808394 | MS.gene053638:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | 4.4:+21809492 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4.4:-21808395 | MS.gene053638:CDS |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4.4:-21809441 | MS.gene053638:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4.4:-21808103 | MS.gene053638:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4.4:+21809402 | None:intergenic |
| CGGAAGACTAAACTTAAAAG+TGG | 0.556487 | 4.4:-21808131 | MS.gene053638:CDS |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4.4:+21808389 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4.4:-21809414 | MS.gene053638:CDS |
| TCAACAAACTGCTCAACTGA+TGG | 0.571107 | 4.4:+21808748 | None:intergenic |
| CTGTAACATATAAGGAAACA+AGG | 0.572784 | 4.4:-21807245 | MS.gene053638:intron |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4.4:+21807774 | None:intergenic |
| TGGTATCATAAACTATGGAC+AGG | 0.579973 | 4.4:-21809394 | MS.gene053638:intron |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4.4:+21808311 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4.4:-21807790 | MS.gene053638:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4.4:-21808795 | MS.gene053638:CDS |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4.4:+21809403 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4.4:-21809421 | MS.gene053638:CDS |
| GGAAAATGATATCTTCACTC+CGG | 0.596052 | 4.4:-21807551 | MS.gene053638:CDS |
| AAACTACGAGGAATACTGGA+TGG | 0.599158 | 4.4:-21807041 | MS.gene053638:CDS |
| AATACAAACAGGGCGTATTG+AGG | 0.599236 | 4.4:-21807018 | MS.gene053638:CDS |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4.4:-21808085 | MS.gene053638:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4.4:-21808846 | MS.gene053638:CDS |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4.4:-21808097 | MS.gene053638:CDS |
| GCTCCTGTTCCCATCAGCAA+AGG | 0.605225 | 4.4:+21808356 | None:intergenic |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4.4:-21807707 | MS.gene053638:intron |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4.4:-21807334 | MS.gene053638:CDS |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4.4:+21808317 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4.4:-21807297 | MS.gene053638:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | 4.4:-21809534 | MS.gene053638:CDS |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4.4:-21808711 | MS.gene053638:CDS |
| AACTGCTCAACTGATGGTGA+TGG | 0.617477 | 4.4:+21808754 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4.4:+21809434 | None:intergenic |
| AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | 4.4:-21808128 | MS.gene053638:CDS |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4.4:-21808056 | MS.gene053638:intron |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4.4:-21808794 | MS.gene053638:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | 4.4:-21808400 | MS.gene053638:intron |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4.4:-21807331 | MS.gene053638:CDS |
| TACTGGATGGAATACAAACA+GGG | 0.652158 | 4.4:-21807028 | MS.gene053638:CDS |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4.4:+21808809 | None:intergenic |
| AGATGGATCTATTCTGCCTG+GGG | 0.660994 | 4.4:-21807524 | MS.gene053638:CDS |
| AAAGGAGAAAAGTTTGCACA+AGG | 0.665194 | 4.4:-21809459 | MS.gene053638:CDS |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | 4.4:+21808282 | None:intergenic |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4.4:+21808386 | None:intergenic |
| ATATGTTACAGATGCAACAG+AGG | 0.681902 | 4.4:+21807257 | None:intergenic |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | 4.4:+21808283 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | 4.4:-21808282 | MS.gene053638:intron |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4.4:-21807286 | MS.gene053638:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTGACTAAAATGAA+AGG | + | chr4.4:21809370-21809389 | None:intergenic | 15.0% |
| !! | AAAAATTGACTAAAATGAAA+GGG | + | chr4.4:21809369-21809388 | None:intergenic | 15.0% |
| !! | ACTATATATAAAGTAAACTT+GGG | - | chr4.4:21807484-21807503 | MS.gene053638:CDS | 15.0% |
| !! | ATATATAATATTCAATTTGG+AGG | + | chr4.4:21808561-21808580 | None:intergenic | 15.0% |
| !! | TACTATATATAAAGTAAACT+TGG | - | chr4.4:21807483-21807502 | MS.gene053638:CDS | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | - | chr4.4:21809130-21809149 | MS.gene053638:intron | 15.0% |
| !!! | AAAATGGTTTCTTTATTTAT+AGG | - | chr4.4:21807645-21807664 | MS.gene053638:intron | 15.0% |
| !!! | AAATGGTTTCTTTATTTATA+GGG | - | chr4.4:21807646-21807665 | MS.gene053638:intron | 15.0% |
| !!! | TGAATATTATATATTTTCCT+TGG | - | chr4.4:21808567-21808586 | MS.gene053638:intron | 15.0% |
| !!! | TTTTAGTCAATTTTTTTTGT+TGG | - | chr4.4:21809374-21809393 | MS.gene053638:intron | 15.0% |
| !! | AAAATAAAAATTTAACAGGG+CGG | - | chr4.4:21808381-21808400 | MS.gene053638:CDS | 20.0% |
| !! | AGAAAATAATGACAAACATT+GGG | + | chr4.4:21809097-21809116 | None:intergenic | 20.0% |
| !! | CTATATATAAAGTAAACTTG+GGG | - | chr4.4:21807485-21807504 | MS.gene053638:CDS | 20.0% |
| !! | GTTTCATATTAATCTTGTTA+AGG | - | chr4.4:21808960-21808979 | MS.gene053638:intron | 20.0% |
| !! | TAGAAAATAATGACAAACAT+TGG | + | chr4.4:21809098-21809117 | None:intergenic | 20.0% |
| !! | TATAAGTAAATTCAAATCCA+TGG | + | chr4.4:21808280-21808299 | None:intergenic | 20.0% |
| !! | TATATATAAAGTAAACTTGG+GGG | - | chr4.4:21807486-21807505 | MS.gene053638:CDS | 20.0% |
| !! | TTATATTACAGTCACAATTA+CGG | - | chr4.4:21807316-21807335 | MS.gene053638:CDS | 20.0% |
| !!! | CTTATATTGTTTTGTTACTA+AGG | - | chr4.4:21808294-21808313 | MS.gene053638:CDS | 20.0% |
| ! | AAAATTATGCTGACATCAAT+TGG | - | chr4.4:21806993-21807012 | MS.gene053638:CDS | 25.0% |
| ! | AAATTATGCTGACATCAATT+GGG | - | chr4.4:21806994-21807013 | MS.gene053638:CDS | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | - | chr4.4:21808052-21808071 | MS.gene053638:intron | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | + | chr4.4:21808052-21808071 | None:intergenic | 25.0% |
| ! | TATTTATAGGGAATCTTTGA+GGG | - | chr4.4:21807658-21807677 | MS.gene053638:intron | 25.0% |
| ! | TGTCTAAAAATGCACTAAAA+TGG | - | chr4.4:21807629-21807648 | MS.gene053638:intron | 25.0% |
| ! | TTATTTATAGGGAATCTTTG+AGG | - | chr4.4:21807657-21807676 | MS.gene053638:intron | 25.0% |
| ! | TTGTGTTTAGCATTATCATT+AGG | + | chr4.4:21809414-21809433 | None:intergenic | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | - | chr4.4:21809174-21809193 | MS.gene053638:intron | 25.0% |
| !! | AATGATGCATATTGTTACTT+AGG | - | chr4.4:21808639-21808658 | MS.gene053638:intron | 25.0% |
| !! | AATTTAAAACCATCGTACAA+GGG | + | chr4.4:21807196-21807215 | None:intergenic | 25.0% |
| !! | CTGTAATATAACGAATTTTG+AGG | + | chr4.4:21807307-21807326 | None:intergenic | 25.0% |
| !! | TAATGATAATGCTAAACACA+AGG | - | chr4.4:21809413-21809432 | MS.gene053638:CDS | 25.0% |
| !!! | ACTAACTTTCATGTTTTAAC+AGG | + | chr4.4:21807402-21807421 | None:intergenic | 25.0% |
| !!! | TTAGTGCATTTTTAGACATT+TGG | + | chr4.4:21807627-21807646 | None:intergenic | 25.0% |
| AAATAATGACAAACATTGGG+AGG | + | chr4.4:21809094-21809113 | None:intergenic | 30.0% | |
| AAATTTCATCGATCAATAGC+TGG | - | chr4.4:21808429-21808448 | MS.gene053638:intron | 30.0% | |
| AACTGGAAAAAATATTGAGG+AGG | - | chr4.4:21808795-21808814 | MS.gene053638:CDS | 30.0% | |
| AAGACTAAACTTAAAAGTGG+AGG | - | chr4.4:21808404-21808423 | MS.gene053638:intron | 30.0% | |
| AATAATGACAAACATTGGGA+GGG | + | chr4.4:21809093-21809112 | None:intergenic | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | + | chr4.4:21807833-21807852 | None:intergenic | 30.0% | |
| ACTATATCCGAAGCAAAAAT+TGG | - | chr4.4:21808925-21808944 | MS.gene053638:intron | 30.0% | |
| AGCAACTGGAAAAAATATTG+AGG | - | chr4.4:21808792-21808811 | MS.gene053638:CDS | 30.0% | |
| CTGTAACATATAAGGAAACA+AGG | - | chr4.4:21809287-21809306 | MS.gene053638:intron | 30.0% | |
| CTTAAGTGTAAAGTAGTACA+AGG | + | chr4.4:21807367-21807386 | None:intergenic | 30.0% | |
| GCTTCGGATATAGTAAAATA+TGG | + | chr4.4:21808919-21808938 | None:intergenic | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | + | chr4.4:21808224-21808243 | None:intergenic | 30.0% | |
| TACCTTATAACCCAAATCAA+TGG | + | chr4.4:21809061-21809080 | None:intergenic | 30.0% | |
| TGAGCTTTCAAAATTGAAAC+AGG | - | chr4.4:21808118-21808137 | MS.gene053638:CDS | 30.0% | |
| TGTTGCATCTGTAACATATA+AGG | - | chr4.4:21809279-21809298 | MS.gene053638:intron | 30.0% | |
| ! | CAATTTAAAACCATCGTACA+AGG | + | chr4.4:21807197-21807216 | None:intergenic | 30.0% |
| ! | CATTAGACCAATTTTTGCTT+CGG | + | chr4.4:21808935-21808954 | None:intergenic | 30.0% |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | - | chr4.4:21808765-21808784 | MS.gene053638:CDS | 30.0% |
| !! | GTGCAATATATTTGTTGTGA+AGG | - | chr4.4:21808825-21808844 | MS.gene053638:CDS | 30.0% |
| !! | GTTACACTGGTTTATATTGT+TGG | - | chr4.4:21807231-21807250 | MS.gene053638:intron | 30.0% |
| !!! | ATGGTTTTAAATTGAGGTTG+CGG | - | chr4.4:21807203-21807222 | MS.gene053638:intron | 30.0% |
| !!! | TGTACGATGGTTTTAAATTG+AGG | - | chr4.4:21807197-21807216 | MS.gene053638:intron | 30.0% |
| AAAGCATATAGAACCGAAGA+TGG | - | chr4.4:21807685-21807704 | MS.gene053638:intron | 35.0% | |
| AAAGGAGAAAAGTTTGCACA+AGG | - | chr4.4:21807073-21807092 | MS.gene053638:CDS | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | - | chr4.4:21807686-21807705 | MS.gene053638:intron | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | + | chr4.4:21807101-21807120 | None:intergenic | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | + | chr4.4:21809003-21809022 | None:intergenic | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | - | chr4.4:21807822-21807841 | MS.gene053638:intron | 35.0% | |
| ATACTGGATGGAATACAAAC+AGG | - | chr4.4:21809503-21809522 | MS.gene053638:CDS | 35.0% | |
| ATATGTTACAGATGCAACAG+AGG | + | chr4.4:21809278-21809297 | None:intergenic | 35.0% | |
| ATCGCCAAAAACTTATGTTG+TGG | - | chr4.4:21808007-21808026 | MS.gene053638:intron | 35.0% | |
| ATGACATGCATGTAATCTGT+TGG | + | chr4.4:21807043-21807062 | None:intergenic | 35.0% | |
| ATTACAGTCACAATTACGGT+TGG | - | chr4.4:21807320-21807339 | MS.gene053638:CDS | 35.0% | |
| CAAGACATCAGAAAATCCAT+TGG | + | chr4.4:21808761-21808780 | None:intergenic | 35.0% | |
| CATAATTTCCTCCACTGATA+TGG | + | chr4.4:21809212-21809231 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | - | chr4.4:21807055-21807074 | MS.gene053638:CDS | 35.0% | |
| CATTGCGATATTTCATATCG+TGG | - | chr4.4:21807930-21807949 | MS.gene053638:intron | 35.0% | |
| CGGAAGACTAAACTTAAAAG+TGG | - | chr4.4:21808401-21808420 | MS.gene053638:intron | 35.0% | |
| GAGGAAAAAACACCATCAAA+CGG | + | chr4.4:21808542-21808561 | None:intergenic | 35.0% | |
| GGAAAATGATATCTTCACTC+CGG | - | chr4.4:21808981-21809000 | MS.gene053638:intron | 35.0% | |
| GTATTGAGGACAAAAAGTCA+TGG | - | chr4.4:21809528-21809547 | MS.gene053638:CDS | 35.0% | |
| TACTGGATGGAATACAAACA+GGG | - | chr4.4:21809504-21809523 | MS.gene053638:CDS | 35.0% | |
| TCATATACATCACCGTTTGA+TGG | - | chr4.4:21808527-21808546 | MS.gene053638:intron | 35.0% | |
| TGAAAAACTACGAGGAATAC+TGG | - | chr4.4:21809487-21809506 | MS.gene053638:CDS | 35.0% | |
| TGCAGAGCTGAATATAAAAC+AGG | - | chr4.4:21809449-21809468 | MS.gene053638:CDS | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | - | chr4.4:21807138-21807157 | MS.gene053638:intron | 35.0% | |
| TTGAGAAGAAATCACATCGA+AGG | - | chr4.4:21808616-21808635 | MS.gene053638:intron | 35.0% | |
| TTTCCTCTTATCTCTCTTTG+TGG | - | chr4.4:21807851-21807870 | MS.gene053638:intron | 35.0% | |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | - | chr4.4:21808591-21808610 | MS.gene053638:intron | 35.0% |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | - | chr4.4:21808590-21808609 | MS.gene053638:intron | 35.0% |
| !! | ATAGACATCGCCATTGATTT+GGG | - | chr4.4:21809048-21809067 | MS.gene053638:intron | 35.0% |
| AAACTACGAGGAATACTGGA+TGG | - | chr4.4:21809491-21809510 | MS.gene053638:CDS | 40.0% | |
| AATACAAACAGGGCGTATTG+AGG | - | chr4.4:21809514-21809533 | MS.gene053638:CDS | 40.0% | |
| AATGCTCTACGCATGAAGAT+GGG | - | chr4.4:21807736-21807755 | MS.gene053638:CDS | 40.0% | |
| ACGTTGTCTGAAAAACTACG+AGG | - | chr4.4:21809479-21809498 | MS.gene053638:CDS | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | + | chr4.4:21808218-21808237 | None:intergenic | 40.0% | |
| AGACCACAAAGAGAGATAAG+AGG | + | chr4.4:21807857-21807876 | None:intergenic | 40.0% | |
| AGTCTAATCAGCTTCATGCA+TGG | - | chr4.4:21807881-21807900 | MS.gene053638:intron | 40.0% | |
| ATAGATGGATCTATTCTGCC+TGG | - | chr4.4:21809006-21809025 | MS.gene053638:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | + | chr4.4:21809046-21809065 | None:intergenic | 40.0% | |
| ATCACTATTGCCATGCATAC+CGG | + | chr4.4:21808498-21808517 | None:intergenic | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | + | chr4.4:21807102-21807121 | None:intergenic | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | - | chr4.4:21807821-21807840 | MS.gene053638:intron | 40.0% | |
| CATAGAACGTTCCATATCAG+TGG | - | chr4.4:21809198-21809217 | MS.gene053638:intron | 40.0% | |
| GACAGATGCAGCTTCAATTT+CGG | - | chr4.4:21807962-21807981 | MS.gene053638:intron | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | - | chr4.4:21807133-21807152 | MS.gene053638:intron | 40.0% | |
| GTAACTGAAGCAAAAGCCAA+TGG | - | chr4.4:21808742-21808761 | MS.gene053638:CDS | 40.0% | |
| GTTGAAATACCCTTGTACGA+TGG | - | chr4.4:21807184-21807203 | MS.gene053638:intron | 40.0% | |
| TAAACTTGGGGGATACCATA+TGG | - | chr4.4:21807497-21807516 | MS.gene053638:CDS | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | - | chr4.4:21809007-21809026 | MS.gene053638:intron | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | + | chr4.4:21807133-21807152 | None:intergenic | 40.0% | |
| TATCTTAGGCCTTTGCTGAT+GGG | - | chr4.4:21808167-21808186 | MS.gene053638:intron | 40.0% | |
| TATGCTGACATCAATTGGGA+AGG | - | chr4.4:21806998-21807017 | MS.gene053638:CDS | 40.0% | |
| TCAACAAACTGCTCAACTGA+TGG | + | chr4.4:21807787-21807806 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | - | chr4.4:21807111-21807130 | MS.gene053638:intron | 40.0% | |
| TTATCTTAGGCCTTTGCTGA+TGG | - | chr4.4:21808166-21808185 | MS.gene053638:intron | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | - | chr4.4:21808778-21808797 | MS.gene053638:CDS | 40.0% | |
| ! | AGGGCCACAACATAAGTTTT+TGG | + | chr4.4:21808014-21808033 | None:intergenic | 40.0% |
| ! | CATAGACATCGCCATTGATT+TGG | - | chr4.4:21809047-21809066 | MS.gene053638:intron | 40.0% |
| ! | CTTTTCACAAGTCACAACCA+AGG | + | chr4.4:21808587-21808606 | None:intergenic | 40.0% |
| ! | GAGTGTTACTAATTATGCCC+CGG | - | chr4.4:21808476-21808495 | MS.gene053638:intron | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | - | chr4.4:21809056-21809075 | MS.gene053638:intron | 40.0% |
| !! | TCATGCATGGTTTTACGTTG+CGG | - | chr4.4:21807894-21807913 | MS.gene053638:intron | 40.0% |
| !!! | AGTTTTTGGCGATCTCCAAA+AGG | + | chr4.4:21808000-21808019 | None:intergenic | 40.0% |
| AAGAAGGATTCGCCCATCTT+CGG | + | chr4.4:21807701-21807720 | None:intergenic | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | - | chr4.4:21809201-21809220 | MS.gene053638:intron | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | - | chr4.4:21809008-21809027 | MS.gene053638:intron | 45.0% | |
| AGTTTATGATACCAGCAGCC+GGG | + | chr4.4:21807132-21807151 | None:intergenic | 45.0% | |
| ATCTTCACTCCGGCAATAGA+TGG | - | chr4.4:21808991-21809010 | MS.gene053638:intron | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | - | chr4.4:21807737-21807756 | MS.gene053638:CDS | 45.0% | |
| CAAACACACCCTATATCCAG+TGG | + | chr4.4:21807549-21807568 | None:intergenic | 45.0% | |
| CAAGTTCTCAGTTGTTGCAG+TGG | + | chr4.4:21807445-21807464 | None:intergenic | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | - | chr4.4:21808236-21808255 | MS.gene053638:intron | 45.0% | |
| GAATGCTCTACGCATGAAGA+TGG | - | chr4.4:21807735-21807754 | MS.gene053638:CDS | 45.0% | |
| GACTGATGCAGTCAAAACTG+CGG | - | chr4.4:21807261-21807280 | MS.gene053638:CDS | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | - | chr4.4:21808153-21808172 | MS.gene053638:intron | 45.0% | |
| GGTTGCGGTTATTGTTACAC+TGG | - | chr4.4:21807218-21807237 | MS.gene053638:intron | 45.0% | |
| TAATTATGCCCCGGTATGCA+TGG | - | chr4.4:21808485-21808504 | MS.gene053638:intron | 45.0% | |
| TAGATCCGCCACTGGATATA+GGG | - | chr4.4:21807538-21807557 | MS.gene053638:CDS | 45.0% | |
| TCACTATTGCCATGCATACC+GGG | + | chr4.4:21808497-21808516 | None:intergenic | 45.0% | |
| TTATGTTGTGGCCCTAACAG+TGG | - | chr4.4:21808019-21808038 | MS.gene053638:intron | 45.0% | |
| ! | AACTGCTCAACTGATGGTGA+TGG | + | chr4.4:21807781-21807800 | None:intergenic | 45.0% |
| ! | AATCCTTCTTTTCCGACCAG+AGG | - | chr4.4:21807711-21807730 | MS.gene053638:CDS | 45.0% |
| ! | CGGTTGCGATTTTCACCTTT+TGG | - | chr4.4:21807982-21808001 | MS.gene053638:intron | 45.0% |
| !! | AAAAAAAATAAAAATTTAAC+AGG | - | chr4.4:21808377-21808396 | MS.gene053638:CDS | 5.0% |
| !! | AAAAAAATAAAAATTTAACA+GGG | - | chr4.4:21808378-21808397 | MS.gene053638:CDS | 5.0% |
| !! | AAAATATATAATATTCAATT+TGG | + | chr4.4:21808564-21808583 | None:intergenic | 5.0% |
| !!! | TTTTTTAAAATTAAAAAAGA+AGG | + | chr4.4:21808363-21808382 | None:intergenic | 5.0% |
| ACACACCCTATATCCAGTGG+CGG | + | chr4.4:21807546-21807565 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | + | chr4.4:21808254-21808273 | None:intergenic | 50.0% | |
| ATGGGAACAGGAGCTGCATT+AGG | - | chr4.4:21808185-21808204 | MS.gene053638:intron | 50.0% | |
| CAAGGATCCCTCATTCGCTA+TGG | - | chr4.4:21807091-21807110 | MS.gene053638:intron | 50.0% | |
| CACTATTGCCATGCATACCG+GGG | + | chr4.4:21808496-21808515 | None:intergenic | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | - | chr4.4:21808435-21808454 | MS.gene053638:intron | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | + | chr4.4:21808253-21808272 | None:intergenic | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | + | chr4.4:21808252-21808271 | None:intergenic | 50.0% | |
| GCGGTTCAGAACCACTGTTA+GGG | + | chr4.4:21808033-21808052 | None:intergenic | 50.0% | |
| GGATACCATATGGCTCCCAT+GGG | - | chr4.4:21807507-21807526 | MS.gene053638:CDS | 50.0% | |
| GTAGATCCGCCACTGGATAT+AGG | - | chr4.4:21807537-21807556 | MS.gene053638:CDS | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | + | chr4.4:21807717-21807736 | None:intergenic | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | - | chr4.4:21808132-21808151 | MS.gene053638:CDS | 50.0% | |
| TGCGGTTCAGAACCACTGTT+AGG | + | chr4.4:21808034-21808053 | None:intergenic | 50.0% | |
| TGCTCTACGCATGAAGATGG+GGG | - | chr4.4:21807738-21807757 | MS.gene053638:CDS | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | - | chr4.4:21808131-21808150 | MS.gene053638:CDS | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | + | chr4.4:21808152-21808171 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | + | chr4.4:21807730-21807749 | None:intergenic | 50.0% |
| ! | ATGGATTTTCGTGTGACCCC+AGG | + | chr4.4:21809027-21809046 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | - | chr4.4:21809235-21809254 | MS.gene053638:intron | 50.0% |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | + | chr4.4:21807726-21807745 | None:intergenic | 50.0% |
| !! | ATCCAGTGGCGGATCTACTT+GGG | + | chr4.4:21807535-21807554 | None:intergenic | 50.0% |
| !! | TATCCAGTGGCGGATCTACT+TGG | + | chr4.4:21807536-21807555 | None:intergenic | 50.0% |
| AACAGGAGCTGCATTAGGCC+CGG | - | chr4.4:21808190-21808209 | MS.gene053638:intron | 55.0% | |
| AAGTACCACGAGGTCAGCCA+TGG | - | chr4.4:21808260-21808279 | MS.gene053638:intron | 55.0% | |
| AGGCCTTTGCTGATGGGAAC+AGG | - | chr4.4:21808173-21808192 | MS.gene053638:intron | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | - | chr4.4:21808138-21808157 | MS.gene053638:intron | 55.0% | |
| ATTGAGATAAGCCCGGCTGC+TGG | - | chr4.4:21807118-21807137 | MS.gene053638:intron | 55.0% | |
| CAAATCCATGGCTGACCTCG+TGG | + | chr4.4:21808268-21808287 | None:intergenic | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | - | chr4.4:21808438-21808457 | MS.gene053638:intron | 55.0% | |
| GCATGAAGATGGGGGCTGAT+AGG | - | chr4.4:21807746-21807765 | MS.gene053638:CDS | 55.0% | |
| GCTCCTGTTCCCATCAGCAA+AGG | + | chr4.4:21808179-21808198 | None:intergenic | 55.0% | |
| GGATCTACTTGGGGACCCAT+GGG | + | chr4.4:21807525-21807544 | None:intergenic | 55.0% | |
| GGGATACCATATGGCTCCCA+TGG | - | chr4.4:21807506-21807525 | MS.gene053638:CDS | 55.0% | |
| GTTCTGCACAGGAACTGCAG+TGG | - | chr4.4:21809246-21809265 | MS.gene053638:intron | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | - | chr4.4:21808444-21808463 | MS.gene053638:intron | 55.0% |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | + | chr4.4:21808149-21808168 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | - | chr4.4:21808250-21808269 | MS.gene053638:intron | 55.0% |
| !! | GTGTACTCAGGTGATGGAGC+CGG | + | chr4.4:21808212-21808231 | None:intergenic | 55.0% |
| !! | TCCAGTGGCGGATCTACTTG+GGG | + | chr4.4:21807534-21807553 | None:intergenic | 55.0% |
| !! | TGTACTCAGGTGATGGAGCC+GGG | + | chr4.4:21808211-21808230 | None:intergenic | 55.0% |
| CAGGTACCTCCTCCAGGGAA+AGG | - | chr4.4:21808137-21808156 | MS.gene053638:intron | 60.0% | |
| CGGATCTACTTGGGGACCCA+TGG | + | chr4.4:21807526-21807545 | None:intergenic | 60.0% | |
| TCCCCAAGTAGATCCGCCAC+TGG | - | chr4.4:21807530-21807549 | MS.gene053638:CDS | 60.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | + | chr4.4:21808146-21808165 | None:intergenic | 65.0% | |
| GGGGACCCATGGGAGCCATA+TGG | + | chr4.4:21807515-21807534 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | - | chr4.4:21808447-21808466 | MS.gene053638:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 21806986 | 21809568 | 21806986 | ID=MS.gene053638 |
| chr4.4 | mRNA | 21806986 | 21809568 | 21806986 | ID=MS.gene053638.t1;Parent=MS.gene053638 |
| chr4.4 | exon | 21809395 | 21809568 | 21809395 | ID=MS.gene053638.t1.exon1;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21809395 | 21809568 | 21809395 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21808711 | 21808887 | 21808711 | ID=MS.gene053638.t1.exon2;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21808711 | 21808887 | 21808711 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21808283 | 21808414 | 21808283 | ID=MS.gene053638.t1.exon3;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21808283 | 21808414 | 21808283 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21808057 | 21808155 | 21808057 | ID=MS.gene053638.t1.exon4;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21808057 | 21808155 | 21808057 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21807708 | 21807824 | 21807708 | ID=MS.gene053638.t1.exon5;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21807708 | 21807824 | 21807708 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21807477 | 21807572 | 21807477 | ID=MS.gene053638.t1.exon6;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21807477 | 21807572 | 21807477 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21807246 | 21807358 | 21807246 | ID=MS.gene053638.t1.exon7;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21807246 | 21807358 | 21807246 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| chr4.4 | exon | 21806986 | 21807100 | 21806986 | ID=MS.gene053638.t1.exon8;Parent=MS.gene053638.t1 |
| chr4.4 | CDS | 21806986 | 21807100 | 21806986 | ID=cds.MS.gene053638.t1;Parent=MS.gene053638.t1 |
| Gene Sequence |
| Protein sequence |
