AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40346


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40346.t1 MTR_3g109410 96.610 59 2 0 1 59 1 59 3.39e-35 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 242 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTGCAGGTGGTGGTTT+AGG 0.232476 3.3:+89768361 MS.gene40346:CDS
GGAGTTGGTGGTGGCATTGG+TGG 0.236714 3.3:+89768202 MS.gene40346:CDS
ATTGGAGGCGGAGGTGGTTT+TGG 0.244417 3.3:+89768931 MS.gene40346:CDS
TTTGGCGGAGGAGGCGGCTT+TGG 0.263947 3.3:+89769045 MS.gene40346:CDS
AGTGGACTTGGTGGCGGTGG+TGG 0.265321 3.3:+89768307 MS.gene40346:CDS
ATTGGTGCTGGTGGAGGTTT+AGG 0.266712 3.3:+89768127 MS.gene40346:CDS
GGTGGTGGTGGCATTGGTGG+TGG 0.270683 3.3:+89768649 MS.gene40346:CDS
GGTGGCATTGGTGGAGGTGG+AGG 0.273088 3.3:+89768283 MS.gene40346:CDS
TTAGGAGGTGGAGGTGGATT+TGG 0.277094 3.3:+89768379 MS.gene40346:CDS
GGAGGGGCAGGAGGTGGAGG+TGG 0.277393 3.3:+89768889 MS.gene40346:CDS
GGGATTGGTGGAGGTGCTGG+TGG 0.280392 3.3:+89768160 MS.gene40346:CDS
GGCGGAGGAGTAGGTGGTGG+TGG 0.281064 3.3:+89768442 MS.gene40346:CDS
GGTGGCATTGGCGGAGGTGG+TGG 0.286897 3.3:+89768523 MS.gene40346:CDS
CTTGGTGGCGGTGGTGGGCT+TGG 0.291361 3.3:+89768313 MS.gene40346:CDS
TGGCATTGGTGGAGGGGCAG+GGG 0.292201 3.3:+89768819 MS.gene40346:CDS
GGATTAGGTCATGGTGTTGG+AGG 0.292379 3.3:+89768562 MS.gene40346:CDS
CTTGGTCATGGTGGAGGATT+AGG 0.293307 3.3:+89768547 MS.gene40346:CDS
GATTGGTGGAGGTGCTGGTG+GGG 0.296905 3.3:+89768162 MS.gene40346:CDS
GGTGGTGGCATTGGTGGTGG+AGG 0.301387 3.3:+89768652 MS.gene40346:CDS
GGTGGAGGGGCAGGAGGTGG+AGG 0.305337 3.3:+89768886 MS.gene40346:CDS
ATTGGTGGAGGTGCTGGTGG+GGG 0.305728 3.3:+89768163 MS.gene40346:CDS
GGAGGTGGAGGGAGTGGACT+TGG 0.305768 3.3:+89768295 MS.gene40346:CDS
GTTGGTGGTGGAGGTGGATT+AGG 0.306105 3.3:+89768781 MS.gene40346:CDS
GGTGGTGGAGGAGGTGGTTT+TGG 0.307376 3.3:+89769027 MS.gene40346:CDS
GGTGGGATTGGTGGAGGTGC+TGG 0.308224 3.3:+89768157 MS.gene40346:CDS
GGAGGTGGCGGCATTGGTGG+AGG 0.309421 3.3:+89768871 MS.gene40346:CDS
GATGGACTTGGTGGTGGTGG+TGG 0.312078 3.3:+89768481 MS.gene40346:CDS
AGGTGGAGGACTTGGTGCTG+GGG 0.312316 3.3:+89768237 MS.gene40346:CDS
GGTGGGATTGGAGGCGGAGG+TGG 0.313094 3.3:+89768925 MS.gene40346:CDS
GGAGGAGTCGGCGGTGGTGG+AGG 0.314096 3.3:+89769015 MS.gene40346:CDS
GGTGGAGTTGGTGGTGGCAT+TGG 0.314756 3.3:+89768199 MS.gene40346:CDS
GGTGGAGCAGGAGGTGGAGG+TGG 0.316864 3.3:+89768739 MS.gene40346:CDS
ATCGGTGGTGGCATTGGTGG+AGG 0.323219 3.3:+89768811 MS.gene40346:CDS
TTTGGAGGTGGAGGTGGAGT+TGG 0.326104 3.3:+89768187 MS.gene40346:CDS
AGTTGGTGGTGGCATTGGTG+GGG 0.326726 3.3:+89768204 MS.gene40346:CDS
GCAGGAGGTGGAGGTGGTAT+AGG 0.328788 3.3:+89768895 MS.gene40346:CDS
ATTGGTGGTGGAGGAGGATT+GGG 0.329321 3.3:+89768661 MS.gene40346:CDS
GGAGGTGCTGGTGGAGGATT+TGG 0.329543 3.3:+89768973 MS.gene40346:CDS
GGAGGTGGAGGACTTGGTGC+TGG 0.332648 3.3:+89768235 MS.gene40346:CDS
GGCATTGGTGGAGGGGCAGG+GGG 0.336414 3.3:+89768820 MS.gene40346:CDS
TTGGAAAAGGAGTAGGCATT+GGG 0.336860 3.3:+89768992 MS.gene40346:CDS
GGTGGCATTGGTGGAGGGGC+AGG 0.338530 3.3:+89768817 MS.gene40346:CDS
CATTGGTGGTGGAGGAGGAT+TGG 0.338543 3.3:+89768660 MS.gene40346:CDS
GGGGTGGCGGCGGCATTGGT+GGG 0.342224 3.3:+89768839 MS.gene40346:CDS
CTCGGAGGAGGTGGAGGACT+TGG 0.342337 3.3:+89768229 MS.gene40346:CDS
CATGGTATTGGTGGTGGCAT+TGG 0.351375 3.3:+89768685 MS.gene40346:CDS
GGAGTCGGCGGTGGTGGAGG+AGG 0.351656 3.3:+89769018 MS.gene40346:CDS
ATTCATCCACCACATTTGTT+AGG 0.352512 3.3:+89768067 MS.gene40346:CDS
GGTGGTGCCGGTGGTGGACT+TGG 0.353125 3.3:+89768403 MS.gene40346:CDS
GGTGGCATTGGTGGAGGAGC+AGG 0.354739 3.3:+89768697 MS.gene40346:CDS
GGGTGGCGGCGGCATTGGTG+GGG 0.354836 3.3:+89768840 MS.gene40346:CDS
ATTGGCGGAGGTGGTGGGCT+TGG 0.355671 3.3:+89768529 MS.gene40346:CDS
CTTGGTCATGGTGGTGGGAT+TGG 0.357216 3.3:+89768421 MS.gene40346:CDS
GGAGGCATTGGTGGAGGTGC+AGG 0.359881 3.3:+89768349 MS.gene40346:CDS
GTGGCATTGGTGGAGGGGCA+GGG 0.361361 3.3:+89768818 MS.gene40346:CDS
GAGTTGGTGGTGGCATTGGT+GGG 0.363368 3.3:+89768203 MS.gene40346:CDS
GCAGGAGGTGGAGGTGGATT+AGG 0.365271 3.3:+89768745 MS.gene40346:CDS
GGAGGAGCAGGAGGTGGTGG+TGG 0.366454 3.3:+89768637 MS.gene40346:CDS
GGAGGGCTTGGACATGGTAT+TGG 0.367081 3.3:+89768259 MS.gene40346:CDS
GGTGGCATTGGTGGTGGAGG+AGG 0.367900 3.3:+89768655 MS.gene40346:CDS
GTTGGTGGTGGCATTGGTGG+GGG 0.368729 3.3:+89768205 MS.gene40346:CDS
AGGTTTGGTGGCGGTGGTAT+TGG 0.369653 3.3:+89768109 MS.gene40346:CDS
ATTGGTGGAGGGGCAGGAGG+TGG 0.369675 3.3:+89768883 MS.gene40346:CDS
GGAGATGGACTTGGTGGTGG+TGG 0.373586 3.3:+89768478 MS.gene40346:CDS
GAGGTGGAGGACTTGGTGCT+GGG 0.374190 3.3:+89768236 MS.gene40346:CDS
GGTGGAGGTGGAGTTGGTGG+TGG 0.376758 3.3:+89768193 MS.gene40346:CDS
GCAGGAGGTGGTGGTGGCAT+TGG 0.378047 3.3:+89768643 MS.gene40346:CDS
TTTGGTGGTGGTGCCGGTGG+TGG 0.378175 3.3:+89768397 MS.gene40346:CDS
CATGGTATTGGTGGTGGCAT+TGG 0.378332 3.3:+89768271 MS.gene40346:CDS
CGGTGGTGGCGGCGGCCCTT+AGG 0.379930 3.3:+89769101 MS.gene40346:CDS
GGTATTGGTGGTGGCATTGG+TGG 0.380871 3.3:+89768274 MS.gene40346:CDS
GGTATTGGTGGTGGCATTGG+TGG 0.380871 3.3:+89768688 MS.gene40346:CDS
GGGAGTGGACTTGGTGGCGG+TGG 0.381211 3.3:+89768304 MS.gene40346:CDS
GGTGGCGGCGGCATTGGTGG+GGG 0.382434 3.3:+89768841 MS.gene40346:CDS
GGAGGTGGAGGTGGAGTTGG+TGG 0.384112 3.3:+89768190 MS.gene40346:CDS
GGTGGTGGAGCAGGAGGTGG+AGG 0.384505 3.3:+89768736 MS.gene40346:CDS
GGCATAGGTGTTGGTGGTGG+AGG 0.384821 3.3:+89768772 MS.gene40346:CDS
TTTGGAGTTGGTGCTGGTAT+TGG 0.384906 3.3:+89769063 MS.gene40346:CDS
GGTGGTGGCATTGGTGGAGG+TGG 0.385609 3.3:+89768280 MS.gene40346:CDS
GGAGGTGGTGGTGGCATTGG+TGG 0.387342 3.3:+89768646 MS.gene40346:CDS
GCAGGAGGAGGTGGCGGCAT+TGG 0.388455 3.3:+89768865 MS.gene40346:CDS
GGAGGATTGGGTCATGGTAT+TGG 0.389101 3.3:+89768673 MS.gene40346:CDS
CATGGTATCGGTGGTGGCAT+TGG 0.389309 3.3:+89768613 MS.gene40346:CDS
GCAGGAGGTGGTGGCGGTAT+TGG 0.389484 3.3:+89768715 MS.gene40346:CDS
GGGCTTGGACATGGTATTGG+TGG 0.390529 3.3:+89768262 MS.gene40346:CDS
GGTGGAGGACTTGGTGCTGG+GGG 0.391353 3.3:+89768238 MS.gene40346:CDS
GGATTGGTGGAGGTGCTGGT+GGG 0.394500 3.3:+89768161 MS.gene40346:CDS
CCACCACATTTGTTAGGTCC+TGG 0.394820 3.3:+89768073 MS.gene40346:CDS
GGGATTGGCGGAGGAGTAGG+TGG 0.396002 3.3:+89768436 MS.gene40346:CDS
GGTGGACTTGGTCATGGTGG+TGG 0.396866 3.3:+89768415 MS.gene40346:CDS
ATAGGAGCAGGTGGTGGGAT+TGG 0.397340 3.3:+89768913 MS.gene40346:CDS
CATGGTGTTGGAGGAGGCAT+TGG 0.397392 3.3:+89768337 MS.gene40346:CDS
ATGGACTTGGTGGTGGTGGT+GGG 0.397793 3.3:+89768482 MS.gene40346:CDS
GGCGGTATTGGTGGTGGAGC+AGG 0.398359 3.3:+89768727 MS.gene40346:CDS
GTGGACTTGGTGGCGGTGGT+GGG 0.398981 3.3:+89768308 MS.gene40346:CDS
ATTGGTGGAGGTGGAGGGAG+TGG 0.399205 3.3:+89768289 MS.gene40346:CDS
GGTGGAGGGAGTGGACTTGG+TGG 0.399345 3.3:+89768298 MS.gene40346:CDS
GCAGGTGGTGGTTTAGGAGG+TGG 0.399928 3.3:+89768367 MS.gene40346:CDS
ATAGGTGTTGGTGGTGGAGG+TGG 0.400347 3.3:+89768775 MS.gene40346:CDS
GGATTCAAACATGGAAGGTT+TGG 0.402586 3.3:+89768094 MS.gene40346:CDS
AGTGGTGTAGGCGGAGGTGC+TGG 0.402747 3.3:+89768961 MS.gene40346:CDS
GGTGGGCTTGGTCATGGTGT+TGG 0.402809 3.3:+89768325 MS.gene40346:CDS
GGTGGTTTAGGAGGTGGAGG+TGG 0.405573 3.3:+89768373 MS.gene40346:CDS
GCGGAGGAGTAGGTGGTGGT+GGG 0.405607 3.3:+89768443 MS.gene40346:CDS
GGTGGGATTGGCGGAGGAGT+AGG 0.408096 3.3:+89768433 MS.gene40346:CDS
ATTGGTGGAGGTGCAGGTGG+TGG 0.409868 3.3:+89768355 MS.gene40346:CDS
GGTGGAGATGGACTTGGTGG+TGG 0.410951 3.3:+89768475 MS.gene40346:CDS
GCTGGAGCCGGTGGTGGCGG+CGG 0.411597 3.3:+89769093 MS.gene40346:CDS
GGTGTTGGAGGAGGCATTGG+TGG 0.411864 3.3:+89768340 MS.gene40346:CDS
ATTGGAGTTGGCGCTGGAGC+CGG 0.411887 3.3:+89769081 MS.gene40346:CDS
GGTGGATTTGGTGGTGGTGC+CGG 0.412523 3.3:+89768391 MS.gene40346:CDS
GGCGGCATTGGTGGAGGGGC+AGG 0.413679 3.3:+89768877 MS.gene40346:CDS
GGTGGAGGAGCAGGAGGTGG+TGG 0.413797 3.3:+89768634 MS.gene40346:CDS
GGAGGGAGTGGACTTGGTGG+CGG 0.414376 3.3:+89768301 MS.gene40346:CDS
GTGGCATTGGCGGAGGTGGT+GGG 0.415413 3.3:+89768524 MS.gene40346:CDS
ATTGGTGGTGGCATTGGTGG+AGG 0.415928 3.3:+89768277 MS.gene40346:CDS
GGTGGCATTGGTGGAGGAGC+AGG 0.416597 3.3:+89768625 MS.gene40346:CDS
GGACTAGGAGGTGGGATTGG+TGG 0.417695 3.3:+89768148 MS.gene40346:CDS
GGCGCTGGAGCCGGTGGTGG+CGG 0.417885 3.3:+89769090 MS.gene40346:CDS
GTGGCATTGGTGGAGGTGGA+GGG 0.418495 3.3:+89768284 MS.gene40346:CDS
AGGTGGCGGCATTGGTGGAG+GGG 0.419108 3.3:+89768873 MS.gene40346:CDS
CTTGGTCATGGTGTTGGAGG+AGG 0.420617 3.3:+89768331 MS.gene40346:CDS
GGTGGTGGCATTGGCGGAGG+TGG 0.421489 3.3:+89768520 MS.gene40346:CDS
GGAGGAGGTGGCGGCATTGG+TGG 0.422603 3.3:+89768868 MS.gene40346:CDS
GGTGTAGGTGGTGGCATTGG+CGG 0.422893 3.3:+89768514 MS.gene40346:CDS
CTTGGAGGTGGAGATGGACT+TGG 0.422999 3.3:+89768469 MS.gene40346:CDS
GGCATTGGTGGAGGGGCAGG+AGG 0.425232 3.3:+89768880 MS.gene40346:CDS
GGCGGATGGTAGACAAGTTA+AGG 0.425465 3.3:+89768015 MS.gene40346:CDS
CGGAGGAGTAGGTGGTGGTG+GGG 0.426294 3.3:+89768444 MS.gene40346:CDS
GCAGGTGGTGGGATTGGAGG+CGG 0.428039 3.3:+89768919 MS.gene40346:CDS
GGAGGAGGCGGCTTTGGAGT+TGG 0.429923 3.3:+89769051 MS.gene40346:CDS
CATGGTATCGGTGGTGGCAT+TGG 0.430049 3.3:+89768805 MS.gene40346:CDS
GGCGGTGGTGGGCTTGGTCA+TGG 0.430589 3.3:+89768319 MS.gene40346:CDS
GGTGGGCTTGGTCATGGTGG+AGG 0.433369 3.3:+89768541 MS.gene40346:CDS
GTTGGAGGAGGCATTGGTGG+AGG 0.433592 3.3:+89768343 MS.gene40346:CDS
GGAGGTGGAGGTGGATTTGG+TGG 0.434685 3.3:+89768382 MS.gene40346:CDS
GTCGGCGGTGGTGGAGGAGG+TGG 0.437026 3.3:+89769021 MS.gene40346:CDS
GGTATCGGTGGTGGCATTGG+TGG 0.437055 3.3:+89768616 MS.gene40346:CDS
GGTATCGGTGGTGGCATTGG+TGG 0.437055 3.3:+89768808 MS.gene40346:CDS
GGTGGGATTGGACATGGTGT+AGG 0.438697 3.3:+89768499 MS.gene40346:CDS
ATTGGTGGAGGAGCAGGAGG+TGG 0.439229 3.3:+89768631 MS.gene40346:CDS
ATTGGTGGAGGAGCAGGAGG+TGG 0.439229 3.3:+89768703 MS.gene40346:CDS
GTGGACTTGGTCATGGTGGT+GGG 0.441282 3.3:+89768416 MS.gene40346:CDS
CTAAGGGCCGCCGCCACCAC+CGG 0.442094 3.3:-89769100 None:intergenic
GGTGGTGGTGGGATTGGACA+TGG 0.442738 3.3:+89768493 MS.gene40346:CDS
GGTGGAGGAGCAGGAGGTGG+TGG 0.443374 3.3:+89768706 MS.gene40346:CDS
GGTGGTATAGGAGCAGGTGG+TGG 0.446088 3.3:+89768907 MS.gene40346:CDS
GGTGGTGGCGGTATTGGTGG+TGG 0.446963 3.3:+89768721 MS.gene40346:CDS
TGCAATATTCTACTTGTCAC+TGG 0.448463 3.3:+89767980 MS.gene40346:CDS
GCCGGTGGTGGACTTGGTCA+TGG 0.449112 3.3:+89768409 MS.gene40346:CDS
ATTGGTGGTGGCATTGGTGG+AGG 0.449627 3.3:+89768691 MS.gene40346:CDS
GGAGGAGTAGGTGGTGGTGG+GGG 0.449956 3.3:+89768445 MS.gene40346:CDS
GGTGGTGGGATTGGAGGCGG+AGG 0.452007 3.3:+89768922 MS.gene40346:CDS
GGAGGTGGTGGGCTTGGTCA+TGG 0.453679 3.3:+89768535 MS.gene40346:CDS
GGCGGCTTTGGAGTTGGTGC+TGG 0.454573 3.3:+89769057 MS.gene40346:CDS
GGTGGAGGTGGTATAGGAGC+AGG 0.454914 3.3:+89768901 MS.gene40346:CDS
GGGCTTGGTCATGGTGTTGG+AGG 0.457129 3.3:+89768328 MS.gene40346:CDS
GGAGGAGCAGGAGGTGGTGG+CGG 0.460819 3.3:+89768709 MS.gene40346:CDS
GCTGGTATTGGAGTTGGCGC+TGG 0.463717 3.3:+89769075 MS.gene40346:CDS
GGAGGATTAGGTCATGGTGT+TGG 0.464108 3.3:+89768559 MS.gene40346:CDS
TTAGGACTAGGAGGTGGGAT+TGG 0.465482 3.3:+89768145 MS.gene40346:CDS
CATGGTGTAGGTGGTGGCAT+TGG 0.467903 3.3:+89768511 MS.gene40346:CDS
GGAGGTGGAGATGGACTTGG+TGG 0.469103 3.3:+89768472 MS.gene40346:CDS
ATTGGTGGTGGAGCAGGAGG+TGG 0.469692 3.3:+89768733 MS.gene40346:CDS
GGAGGTGGTGGCGGTATTGG+TGG 0.469995 3.3:+89768718 MS.gene40346:CDS
GTGGTATAGGAGCAGGTGGT+GGG 0.470138 3.3:+89768908 MS.gene40346:CDS
GGTGGTATTGGTGCTGGTGG+AGG 0.470406 3.3:+89768121 MS.gene40346:CDS
TTGGGTCATGGTATCGGTGG+TGG 0.470603 3.3:+89768607 MS.gene40346:CDS
GTTGGCGCTGGAGCCGGTGG+TGG 0.470950 3.3:+89769087 MS.gene40346:CDS
GGTGGCGGTGGTATTGGTGC+TGG 0.477731 3.3:+89768115 MS.gene40346:CDS
GGTGGTGGGCTTGGTCATGG+TGG 0.478804 3.3:+89768538 MS.gene40346:CDS
GAGGTTTAGGACTAGGAGGT+GGG 0.479626 3.3:+89768140 MS.gene40346:CDS
CATGGAAGGTTTGGTGGCGG+TGG 0.480018 3.3:+89768103 MS.gene40346:CDS
ATCGGTGGTGGCATTGGTGG+AGG 0.480047 3.3:+89768619 MS.gene40346:CDS
GGCCATGGCATAGGTGTTGG+TGG 0.481630 3.3:+89768766 MS.gene40346:CDS
GTAGGTGGTGGCATTGGCGG+AGG 0.481834 3.3:+89768517 MS.gene40346:CDS
TCGGTGGTGGCATTGGTGGA+GGG 0.481964 3.3:+89768812 MS.gene40346:CDS
GGGATTGGACATGGTGTAGG+TGG 0.482034 3.3:+89768502 MS.gene40346:CDS
GGCATTGGTGGAGGTGCAGG+TGG 0.482335 3.3:+89768352 MS.gene40346:CDS
GGAGGATTGGGTCATGGTAT+CGG 0.484415 3.3:+89768601 MS.gene40346:CDS
CATGGTGGTGGGATTGGCGG+AGG 0.486206 3.3:+89768427 MS.gene40346:CDS
GGCATTGGTGGAGGAGCAGG+AGG 0.486822 3.3:+89768628 MS.gene40346:CDS
GGCATTGGTGGAGGAGCAGG+AGG 0.486822 3.3:+89768700 MS.gene40346:CDS
GTAGGCGGAGGTGCTGGTGG+AGG 0.488801 3.3:+89768967 MS.gene40346:CDS
GCTGGTGGAGGTTTAGGACT+AGG 0.490472 3.3:+89768133 MS.gene40346:CDS
GGTGGAGGAGGATTGGGTCA+TGG 0.491587 3.3:+89768667 MS.gene40346:CDS
GGTGGAGGTGGATTTGGTGG+TGG 0.495481 3.3:+89768385 MS.gene40346:CDS
CATGGCATAGGTGTTGGTGG+TGG 0.500182 3.3:+89768769 MS.gene40346:CDS
GAGGTGGCGGCATTGGTGGA+GGG 0.501066 3.3:+89768872 MS.gene40346:CDS
ATTGGACATGGTGTAGGTGG+TGG 0.501290 3.3:+89768505 MS.gene40346:CDS
GATTAGGTCATGGTGTTGGA+GGG 0.503312 3.3:+89768563 MS.gene40346:CDS
GCTGGTGGAGGATTTGGAAA+AGG 0.503890 3.3:+89768979 MS.gene40346:CDS
GGAGGTTTAGGACTAGGAGG+TGG 0.504334 3.3:+89768139 MS.gene40346:CDS
GGAGCAGGTGGTGGGATTGG+AGG 0.505185 3.3:+89768916 MS.gene40346:CDS
TTTGGAAAAGGAGTAGGCAT+TGG 0.506072 3.3:+89768991 MS.gene40346:CDS
GGTCATGGTGGTGGGATTGG+CGG 0.507057 3.3:+89768424 MS.gene40346:CDS
GGTGGTGGTTTAGGAGGTGG+AGG 0.508231 3.3:+89768370 MS.gene40346:CDS
CTTGGACATGGTATTGGTGG+TGG 0.511274 3.3:+89768265 MS.gene40346:CDS
CGGTGGTGGCATTGGTGGAG+GGG 0.512846 3.3:+89768813 MS.gene40346:CDS
GTTGGTGCTGGTATTGGAGT+TGG 0.513093 3.3:+89769069 MS.gene40346:CDS
GGATTGGGTCATGGTATTGG+TGG 0.513240 3.3:+89768676 MS.gene40346:CDS
TTAGGTCATGGTATCGGTGG+TGG 0.514000 3.3:+89768799 MS.gene40346:CDS
TTGGGTCATGGTATTGGTGG+TGG 0.515555 3.3:+89768679 MS.gene40346:CDS
TTCAAACATGGAAGGTTTGG+TGG 0.515682 3.3:+89768097 MS.gene40346:CDS
TTAGGTCATGGTGTTGGAGG+GGG 0.515867 3.3:+89768565 MS.gene40346:CDS
AACCTTCCATGTTTGAATCC+AGG 0.515917 3.3:-89768091 None:intergenic
GGTGTAGGCGGAGGTGCTGG+TGG 0.517214 3.3:+89768964 MS.gene40346:CDS
CACTGGCTTGTTTGAAGTGG+CGG 0.519266 3.3:+89767997 MS.gene40346:CDS
GGTGCAGGTGGTGGTTTAGG+AGG 0.526751 3.3:+89768364 MS.gene40346:CDS
ATTGGCGGAGGAGTAGGTGG+TGG 0.533572 3.3:+89768439 MS.gene40346:CDS
CTAGGAGGTGGGATTGGTGG+AGG 0.534067 3.3:+89768151 MS.gene40346:CDS
ACCATGACCAAGTCCACCAC+CGG 0.539112 3.3:-89768410 None:intergenic
AAATGTGGTGGATGAATGAA+TGG 0.543782 3.3:-89768061 None:intergenic
GGATTTGGTGGTGGTGCCGG+TGG 0.549840 3.3:+89768394 MS.gene40346:CDS
GGAAAAGGAGTAGGCATTGG+GGG 0.557735 3.3:+89768994 MS.gene40346:CDS
GGATTGGGTCATGGTATCGG+TGG 0.558643 3.3:+89768604 MS.gene40346:CDS
GGCGGTGGTATTGGTGCTGG+TGG 0.560622 3.3:+89768118 MS.gene40346:CDS
GGAGGATTTGGAAAAGGAGT+AGG 0.562596 3.3:+89768985 MS.gene40346:CDS
TGGAAAAGGAGTAGGCATTG+GGG 0.562771 3.3:+89768993 MS.gene40346:CDS
ATTAGGTCATGGTGTTGGAG+GGG 0.563870 3.3:+89768564 MS.gene40346:CDS
TGTCACTGGCTTGTTTGAAG+TGG 0.564976 3.3:+89767994 MS.gene40346:CDS
GGAGTTGGCGCTGGAGCCGG+TGG 0.568923 3.3:+89769084 MS.gene40346:CDS
GTCCTGGATTCAAACATGGA+AGG 0.569813 3.3:+89768089 MS.gene40346:CDS
TTAGGCCATGGCATAGGTGT+TGG 0.572017 3.3:+89768763 MS.gene40346:CDS
GGTATTGGTGGTGGAGCAGG+AGG 0.572259 3.3:+89768730 MS.gene40346:CDS
GGTGGAGGTGGATTAGGTCA+TGG 0.579483 3.3:+89768787 MS.gene40346:CDS
GGAGGTGGTATAGGAGCAGG+TGG 0.581473 3.3:+89768904 MS.gene40346:CDS
GGTGGATTAGGTCATGGTAT+CGG 0.587920 3.3:+89768793 MS.gene40346:CDS
GGTGGATTAGGCCATGGCAT+AGG 0.594323 3.3:+89768757 MS.gene40346:CDS
CATGGTGGAGGATTAGGTCA+TGG 0.594938 3.3:+89768553 MS.gene40346:CDS
GGCTTGTTTGAAGTGGCGGA+TGG 0.604162 3.3:+89768001 MS.gene40346:CDS
CACCACCAACACCTATGCCA+TGG 0.604913 3.3:-89768768 None:intergenic
AAACATGGAAGGTTTGGTGG+CGG 0.606605 3.3:+89768100 MS.gene40346:CDS
TGTGGTGGATGAATGAATGG+TGG 0.619449 3.3:-89768058 None:intergenic
GGTGGAGGTGGATTAGGCCA+TGG 0.620849 3.3:+89768751 MS.gene40346:CDS
CCAGGACCTAACAAATGTGG+TGG 0.620943 3.3:-89768073 None:intergenic
TTAGGTCCTGGATTCAAACA+TGG 0.623157 3.3:+89768085 MS.gene40346:CDS
TGACAAGTAGAATATTGCAC+AGG 0.631514 3.3:-89767976 None:intergenic
GGTGGTGGACTTGGTCATGG+TGG 0.634287 3.3:+89768412 MS.gene40346:CDS
GGTGGAGGTTTAGGACTAGG+AGG 0.651813 3.3:+89768136 MS.gene40346:CDS
GGATTAGGTCATGGTATCGG+TGG 0.655767 3.3:+89768796 MS.gene40346:CDS
AATCCAGGACCTAACAAATG+TGG 0.668025 3.3:-89768076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTCTAATGACGTTG+TGG + chr3.3:89767943-89767962 MS.gene40346:CDS 30.0%
ATTCATCCACCACATTTGTT+AGG + chr3.3:89768067-89768086 MS.gene40346:CDS 35.0%
TGACAAGTAGAATATTGCAC+AGG - chr3.3:89767979-89767998 None:intergenic 35.0%
TGCAATATTCTACTTGTCAC+TGG + chr3.3:89767980-89767999 MS.gene40346:CDS 35.0%
!! AAATGTGGTGGATGAATGAA+TGG - chr3.3:89768064-89768083 None:intergenic 35.0%
AACCTTCCATGTTTGAATCC+AGG - chr3.3:89768094-89768113 None:intergenic 40.0%
AATCCAGGACCTAACAAATG+TGG - chr3.3:89768079-89768098 None:intergenic 40.0%
GGATTCAAACATGGAAGGTT+TGG + chr3.3:89768094-89768113 MS.gene40346:CDS 40.0%
TTAGGTCCTGGATTCAAACA+TGG + chr3.3:89768085-89768104 MS.gene40346:CDS 40.0%
TTCAAACATGGAAGGTTTGG+TGG + chr3.3:89768097-89768116 MS.gene40346:CDS 40.0%
TTGGAAAAGGAGTAGGCATT+GGG + chr3.3:89768992-89769011 MS.gene40346:CDS 40.0%
TTTGGAAAAGGAGTAGGCAT+TGG + chr3.3:89768991-89769010 MS.gene40346:CDS 40.0%
GGAGGATTTGGAAAAGGAGT+AGG + chr3.3:89768985-89769004 MS.gene40346:CDS 45.0%
GTCCTGGATTCAAACATGGA+AGG + chr3.3:89768089-89768108 MS.gene40346:CDS 45.0%
! ATTAGGTCATGGTGTTGGAG+GGG + chr3.3:89768564-89768583 MS.gene40346:CDS 45.0%
! GATTAGGTCATGGTGTTGGA+GGG + chr3.3:89768563-89768582 MS.gene40346:CDS 45.0%
! TGGAAAAGGAGTAGGCATTG+GGG + chr3.3:89768993-89769012 MS.gene40346:CDS 45.0%
!! AAACATGGAAGGTTTGGTGG+CGG + chr3.3:89768100-89768119 MS.gene40346:CDS 45.0%
!! GGTGGATTAGGTCATGGTAT+CGG + chr3.3:89768793-89768812 MS.gene40346:CDS 45.0%
!! TGTCACTGGCTTGTTTGAAG+TGG + chr3.3:89767994-89768013 MS.gene40346:CDS 45.0%
!! TGTGGTGGATGAATGAATGG+TGG - chr3.3:89768061-89768080 None:intergenic 45.0%
!! TTTGGAGTTGGTGCTGGTAT+TGG + chr3.3:89769063-89769082 MS.gene40346:CDS 45.0%
ATTGGACATGGTGTAGGTGG+TGG + chr3.3:89768505-89768524 MS.gene40346:CDS 50.0%
CCAGGACCTAACAAATGTGG+TGG - chr3.3:89768076-89768095 None:intergenic 50.0%
GCTGGTGGAGGATTTGGAAA+AGG + chr3.3:89768979-89768998 MS.gene40346:CDS 50.0%
GGAGGATTAGGTCATGGTGT+TGG + chr3.3:89768559-89768578 MS.gene40346:CDS 50.0%
GGAGGATTGGGTCATGGTAT+CGG + chr3.3:89768601-89768620 MS.gene40346:CDS 50.0%
GGAGGATTGGGTCATGGTAT+TGG + chr3.3:89768601-89768620 MS.gene40346:CDS 50.0%
GGCGGATGGTAGACAAGTTA+AGG + chr3.3:89768015-89768034 MS.gene40346:CDS 50.0%
TTAGGACTAGGAGGTGGGAT+TGG + chr3.3:89768145-89768164 MS.gene40346:CDS 50.0%
TTAGGCCATGGCATAGGTGT+TGG + chr3.3:89768763-89768782 MS.gene40346:CDS 50.0%
! CATGGTGGAGGATTAGGTCA+TGG + chr3.3:89768553-89768572 MS.gene40346:CDS 50.0%
! CCACCACATTTGTTAGGTCC+TGG + chr3.3:89768073-89768092 MS.gene40346:CDS 50.0%
! CTTGGTCATGGTGGAGGATT+AGG + chr3.3:89768547-89768566 MS.gene40346:CDS 50.0%
! GAGGTTTAGGACTAGGAGGT+GGG + chr3.3:89768140-89768159 MS.gene40346:CDS 50.0%
! GGATTAGGTCATGGTATCGG+TGG + chr3.3:89768796-89768815 MS.gene40346:CDS 50.0%
! GGATTAGGTCATGGTGTTGG+AGG + chr3.3:89768562-89768581 MS.gene40346:CDS 50.0%
! GGATTGGGTCATGGTATTGG+TGG + chr3.3:89768676-89768695 MS.gene40346:CDS 50.0%
! TTAGGAGGTGGAGGTGGATT+TGG + chr3.3:89768379-89768398 MS.gene40346:CDS 50.0%
! TTAGGTCATGGTGTTGGAGG+GGG + chr3.3:89768565-89768584 MS.gene40346:CDS 50.0%
!! ATTGGTGCTGGTGGAGGTTT+AGG + chr3.3:89768127-89768146 MS.gene40346:CDS 50.0%
!! ATTGGTGGTGGAGGAGGATT+GGG + chr3.3:89768661-89768680 MS.gene40346:CDS 50.0%
!! CACTGGCTTGTTTGAAGTGG+CGG + chr3.3:89767997-89768016 MS.gene40346:CDS 50.0%
!! CATGGTATTGGTGGTGGCAT+TGG + chr3.3:89768271-89768290 MS.gene40346:CDS 50.0%
!! CTTGGACATGGTATTGGTGG+TGG + chr3.3:89768265-89768284 MS.gene40346:CDS 50.0%
!! GGAAAAGGAGTAGGCATTGG+GGG + chr3.3:89768994-89769013 MS.gene40346:CDS 50.0%
!! GTTGGTGCTGGTATTGGAGT+TGG + chr3.3:89769069-89769088 MS.gene40346:CDS 50.0%
!! TTAGGTCATGGTATCGGTGG+TGG + chr3.3:89768799-89768818 MS.gene40346:CDS 50.0%
!! TTGGGTCATGGTATTGGTGG+TGG + chr3.3:89768679-89768698 MS.gene40346:CDS 50.0%
ACCATGACCAAGTCCACCAC+CGG - chr3.3:89768413-89768432 None:intergenic 55.0%
CACCACCAACACCTATGCCA+TGG - chr3.3:89768771-89768790 None:intergenic 55.0%
GGAGGGCTTGGACATGGTAT+TGG + chr3.3:89768259-89768278 MS.gene40346:CDS 55.0%
GGGATTGGACATGGTGTAGG+TGG + chr3.3:89768502-89768521 MS.gene40346:CDS 55.0%
GGTGGGATTGGACATGGTGT+AGG + chr3.3:89768499-89768518 MS.gene40346:CDS 55.0%
GTGGTATAGGAGCAGGTGGT+GGG + chr3.3:89768908-89768927 MS.gene40346:CDS 55.0%
TTTGGAGGTGGAGGTGGAGT+TGG + chr3.3:89768187-89768206 MS.gene40346:CDS 55.0%
! ATTGGAGGCGGAGGTGGTTT+TGG + chr3.3:89768931-89768950 MS.gene40346:CDS 55.0%
! CATGGTGTAGGTGGTGGCAT+TGG + chr3.3:89768511-89768530 MS.gene40346:CDS 55.0%
! CATGGTGTTGGAGGAGGCAT+TGG + chr3.3:89768337-89768356 MS.gene40346:CDS 55.0%
! CTTGGAGGTGGAGATGGACT+TGG + chr3.3:89768469-89768488 MS.gene40346:CDS 55.0%
! CTTGGTCATGGTGTTGGAGG+AGG + chr3.3:89768331-89768350 MS.gene40346:CDS 55.0%
! GCTGGTGGAGGTTTAGGACT+AGG + chr3.3:89768133-89768152 MS.gene40346:CDS 55.0%
! GGAGGTTTAGGACTAGGAGG+TGG + chr3.3:89768139-89768158 MS.gene40346:CDS 55.0%
! GGATTGGGTCATGGTATCGG+TGG + chr3.3:89768604-89768623 MS.gene40346:CDS 55.0%
! GGCTTGTTTGAAGTGGCGGA+TGG + chr3.3:89768001-89768020 MS.gene40346:CDS 55.0%
! GGGCTTGGACATGGTATTGG+TGG + chr3.3:89768262-89768281 MS.gene40346:CDS 55.0%
! GGTGGAGGTTTAGGACTAGG+AGG + chr3.3:89768136-89768155 MS.gene40346:CDS 55.0%
! GTGGACTTGGTCATGGTGGT+GGG + chr3.3:89768416-89768435 MS.gene40346:CDS 55.0%
!! AAAGGAGTAGGCATTGGGGG+AGG + chr3.3:89768997-89769016 MS.gene40346:CDS 55.0%
!! AGGTTTGGTGGCGGTGGTAT+TGG + chr3.3:89768109-89768128 MS.gene40346:CDS 55.0%
!! AGTTGGTGGTGGCATTGGTG+GGG + chr3.3:89768204-89768223 MS.gene40346:CDS 55.0%
!! ATAGGAGCAGGTGGTGGGAT+TGG + chr3.3:89768913-89768932 MS.gene40346:CDS 55.0%
!! ATAGGTGTTGGTGGTGGAGG+TGG + chr3.3:89768775-89768794 MS.gene40346:CDS 55.0%
!! ATGGACTTGGTGGTGGTGGT+GGG + chr3.3:89768482-89768501 MS.gene40346:CDS 55.0%
!! ATTGGTGGTGGCATTGGTGG+AGG + chr3.3:89768277-89768296 MS.gene40346:CDS 55.0%
!! ATTGGTGGTGGGGGAGGATT+GGG + chr3.3:89768589-89768608 MS.gene40346:CDS 55.0%
!! CATGGCATAGGTGTTGGTGG+TGG + chr3.3:89768769-89768788 MS.gene40346:CDS 55.0%
!! CATGGTATCGGTGGTGGCAT+TGG + chr3.3:89768613-89768632 MS.gene40346:CDS 55.0%
!! CATTGGTGGTGGAGGAGGAT+TGG + chr3.3:89768660-89768679 MS.gene40346:CDS 55.0%
!! CTTGGTCATGGTGGTGGGAT+TGG + chr3.3:89768421-89768440 MS.gene40346:CDS 55.0%
!! GAGTTGGTGGTGGCATTGGT+GGG + chr3.3:89768203-89768222 MS.gene40346:CDS 55.0%
!! GGTATTGGTGGTGGCATTGG+TGG + chr3.3:89768274-89768293 MS.gene40346:CDS 55.0%
!! GGTGGAGGTGGATTAGGTCA+TGG + chr3.3:89768787-89768806 MS.gene40346:CDS 55.0%
!! GGTGGATTAGGCCATGGCAT+AGG + chr3.3:89768757-89768776 MS.gene40346:CDS 55.0%
!! GTTGGTGGTGGAGGTGGATT+AGG + chr3.3:89768781-89768800 MS.gene40346:CDS 55.0%
!! TTGGGTCATGGTATCGGTGG+TGG + chr3.3:89768607-89768626 MS.gene40346:CDS 55.0%
ATTGGCGGAGGAGTAGGTGG+TGG + chr3.3:89768439-89768458 MS.gene40346:CDS 60.0%
ATTGGTGGAGGAGCAGGAGG+TGG + chr3.3:89768631-89768650 MS.gene40346:CDS 60.0%
ATTGGTGGAGGTGGAGGGAG+TGG + chr3.3:89768289-89768308 MS.gene40346:CDS 60.0%
GCAGGAGGTGGAGGTGGTAT+AGG + chr3.3:89768895-89768914 MS.gene40346:CDS 60.0%
GGACTAGGAGGTGGGATTGG+TGG + chr3.3:89768148-89768167 MS.gene40346:CDS 60.0%
GGAGGTGGTATAGGAGCAGG+TGG + chr3.3:89768904-89768923 MS.gene40346:CDS 60.0%
GGTGGAGGAGGATTGGGTCA+TGG + chr3.3:89768667-89768686 MS.gene40346:CDS 60.0%
GGTGGAGGTGGTATAGGAGC+AGG + chr3.3:89768901-89768920 MS.gene40346:CDS 60.0%
GGTGGTATAGGAGCAGGTGG+TGG + chr3.3:89768907-89768926 MS.gene40346:CDS 60.0%
GGTGGTTTAGGAGGTGGAGG+TGG + chr3.3:89768373-89768392 MS.gene40346:CDS 60.0%
! ATTGGAGTTGGCGCTGGAGC+CGG + chr3.3:89769081-89769100 MS.gene40346:CDS 60.0%
! ATTGGTGGAGGTGCAGGTGG+TGG + chr3.3:89768355-89768374 MS.gene40346:CDS 60.0%
! CATGGTGTTGGAGGGGGCAT+TGG + chr3.3:89768571-89768590 MS.gene40346:CDS 60.0%
! CTAGGAGGTGGGATTGGTGG+AGG + chr3.3:89768151-89768170 MS.gene40346:CDS 60.0%
! GCAGGAGGTGGAGGTGGATT+AGG + chr3.3:89768745-89768764 MS.gene40346:CDS 60.0%
! GCAGGTGGTGGTTTAGGAGG+TGG + chr3.3:89768367-89768386 MS.gene40346:CDS 60.0%
! GCTGGTATTGGAGTTGGCGC+TGG + chr3.3:89769075-89769094 MS.gene40346:CDS 60.0%
! GGAGGTGCAGGTGGTGGTTT+AGG + chr3.3:89768361-89768380 MS.gene40346:CDS 60.0%
! GGAGGTGGAGATGGACTTGG+TGG + chr3.3:89768472-89768491 MS.gene40346:CDS 60.0%
! GGAGGTGGAGGTGGATTTGG+TGG + chr3.3:89768382-89768401 MS.gene40346:CDS 60.0%
! GGGCTTGGTCATGGTGTTGG+AGG + chr3.3:89768328-89768347 MS.gene40346:CDS 60.0%
! GGTGCAGGTGGTGGTTTAGG+AGG + chr3.3:89768364-89768383 MS.gene40346:CDS 60.0%
! GGTGGACTTGGTCATGGTGG+TGG + chr3.3:89768415-89768434 MS.gene40346:CDS 60.0%
! GGTGGGCTTGGTCATGGTGT+TGG + chr3.3:89768325-89768344 MS.gene40346:CDS 60.0%
! GGTGGTGGTTTAGGAGGTGG+AGG + chr3.3:89768370-89768389 MS.gene40346:CDS 60.0%
! GGTGTAGGTGGTGGCATTGG+CGG + chr3.3:89768514-89768533 MS.gene40346:CDS 60.0%
! TTTGGCGGGGGTAGTGGTGT+AGG + chr3.3:89768949-89768968 MS.gene40346:CDS 60.0%
!! AGGTGGAGGACTTGGTGCTG+GGG + chr3.3:89768237-89768256 MS.gene40346:CDS 60.0%
!! ATCGGTGGTGGCATTGGTGG+AGG + chr3.3:89768619-89768638 MS.gene40346:CDS 60.0%
!! ATTGGTGGAGGTGCTGGTGG+GGG + chr3.3:89768163-89768182 MS.gene40346:CDS 60.0%
!! ATTGGTGGTGGAGCAGGAGG+TGG + chr3.3:89768733-89768752 MS.gene40346:CDS 60.0%
!! CATGGAAGGTTTGGTGGCGG+TGG + chr3.3:89768103-89768122 MS.gene40346:CDS 60.0%
!! CATTGGTGGTGGGGGAGGAT+TGG + chr3.3:89768588-89768607 MS.gene40346:CDS 60.0%
!! CTTGGTGGTGGTGGTGGGAT+TGG + chr3.3:89768487-89768506 MS.gene40346:CDS 60.0%
!! GAGGTGGAGGACTTGGTGCT+GGG + chr3.3:89768236-89768255 MS.gene40346:CDS 60.0%
!! GATGGACTTGGTGGTGGTGG+TGG + chr3.3:89768481-89768500 MS.gene40346:CDS 60.0%
!! GATTGGTGGAGGTGCTGGTG+GGG + chr3.3:89768162-89768181 MS.gene40346:CDS 60.0%
!! GGAGATGGACTTGGTGGTGG+TGG + chr3.3:89768478-89768497 MS.gene40346:CDS 60.0%
!! GGAGGTGCTGGTGGAGGATT+TGG + chr3.3:89768973-89768992 MS.gene40346:CDS 60.0%
!! GGAGTTGGTGGTGGCATTGG+TGG + chr3.3:89768202-89768221 MS.gene40346:CDS 60.0%
!! GGATTGGTGGAGGTGCTGGT+GGG + chr3.3:89768161-89768180 MS.gene40346:CDS 60.0%
!! GGCATAGGTGTTGGTGGTGG+AGG + chr3.3:89768772-89768791 MS.gene40346:CDS 60.0%
!! GGCCATGGCATAGGTGTTGG+TGG + chr3.3:89768766-89768785 MS.gene40346:CDS 60.0%
!! GGTATCGGTGGTGGCATTGG+TGG + chr3.3:89768616-89768635 MS.gene40346:CDS 60.0%
!! GGTATTGGTGGTGGAGCAGG+AGG + chr3.3:89768730-89768749 MS.gene40346:CDS 60.0%
!! GGTCATGGTGGTGGGATTGG+CGG + chr3.3:89768424-89768443 MS.gene40346:CDS 60.0%
!! GGTGGAGATGGACTTGGTGG+TGG + chr3.3:89768475-89768494 MS.gene40346:CDS 60.0%
!! GGTGGAGGTGGATTAGGCCA+TGG + chr3.3:89768751-89768770 MS.gene40346:CDS 60.0%
!! GGTGGAGGTGGATTTGGTGG+TGG + chr3.3:89768385-89768404 MS.gene40346:CDS 60.0%
!! GGTGGAGTTGGTGGTGGCAT+TGG + chr3.3:89768199-89768218 MS.gene40346:CDS 60.0%
!! GGTGGATTTGGTGGTGGTGC+CGG + chr3.3:89768391-89768410 MS.gene40346:CDS 60.0%
!! GGTGGTATTGGTGCTGGTGG+AGG + chr3.3:89768121-89768140 MS.gene40346:CDS 60.0%
!! GGTGGTGGACTTGGTCATGG+TGG + chr3.3:89768412-89768431 MS.gene40346:CDS 60.0%
!! GGTGGTGGTGGGATTGGACA+TGG + chr3.3:89768493-89768512 MS.gene40346:CDS 60.0%
!! GGTGTTGGAGGAGGCATTGG+TGG + chr3.3:89768340-89768359 MS.gene40346:CDS 60.0%
!! GTAGGCATTGGGGGAGGAGT+CGG + chr3.3:89769003-89769022 MS.gene40346:CDS 60.0%
!! GTGGCATTGGTGGAGGTGGA+GGG + chr3.3:89768284-89768303 MS.gene40346:CDS 60.0%
!! GTTGGAGGAGGCATTGGTGG+AGG + chr3.3:89768343-89768362 MS.gene40346:CDS 60.0%
!! GTTGGTGGTGGCATTGGTGG+GGG + chr3.3:89768205-89768224 MS.gene40346:CDS 60.0%
!! TCGGTGGTGGCATTGGTGGA+GGG + chr3.3:89768620-89768639 MS.gene40346:CDS 60.0%
!! TTGGAGGGGGCATTGGTGGT+GGG + chr3.3:89768578-89768597 MS.gene40346:CDS 60.0%
!!! GGTGGAGGAGGTGGTTTTGG+CGG + chr3.3:89769030-89769049 MS.gene40346:CDS 60.0%
!!! GGTGGTGGAGGAGGTGGTTT+TGG + chr3.3:89769027-89769046 MS.gene40346:CDS 60.0%
ATTGGTGGAGGGGCAGGAGG+TGG + chr3.3:89768883-89768902 MS.gene40346:CDS 65.0%
ATTGGTGGGGGAGCAGGAGG+AGG + chr3.3:89768853-89768872 MS.gene40346:CDS 65.0%
ATTGGTGGGGGTCTCGGAGG+AGG + chr3.3:89768217-89768236 MS.gene40346:CDS 65.0%
CTCGGAGGAGGTGGAGGACT+TGG + chr3.3:89768229-89768248 MS.gene40346:CDS 65.0%
GGAGGTGGAGGTGGAGTTGG+TGG + chr3.3:89768190-89768209 MS.gene40346:CDS 65.0%
GGGGGTCTTGGAGGTGGAGA+TGG + chr3.3:89768463-89768482 MS.gene40346:CDS 65.0%
GGTGGGGGAGGATTGGGTCA+TGG + chr3.3:89768595-89768614 MS.gene40346:CDS 65.0%
TTTGGCGGAGGAGGCGGCTT+TGG + chr3.3:89769045-89769064 MS.gene40346:CDS 65.0%
! AGTGGTGTAGGCGGAGGTGC+TGG + chr3.3:89768961-89768980 MS.gene40346:CDS 65.0%
! CGGAGGAGTAGGTGGTGGTG+GGG + chr3.3:89768444-89768463 MS.gene40346:CDS 65.0%
! GCGGAGGAGTAGGTGGTGGT+GGG + chr3.3:89768443-89768462 MS.gene40346:CDS 65.0%
! GGAGGTGGAGGGAGTGGACT+TGG + chr3.3:89768295-89768314 MS.gene40346:CDS 65.0%
! GGGATTGGCGGAGGAGTAGG+TGG + chr3.3:89768436-89768455 MS.gene40346:CDS 65.0%
! GGTGGAGGGAGTGGACTTGG+TGG + chr3.3:89768298-89768317 MS.gene40346:CDS 65.0%
! GGTGGGATTGGCGGAGGAGT+AGG + chr3.3:89768433-89768452 MS.gene40346:CDS 65.0%
! GGTGGGATTGGTGGAGGTGC+TGG + chr3.3:89768157-89768176 MS.gene40346:CDS 65.0%
! GGTGGGCTTGGTCATGGTGG+AGG + chr3.3:89768541-89768560 MS.gene40346:CDS 65.0%
!! AGGTGGCGGCATTGGTGGAG+GGG + chr3.3:89768873-89768892 MS.gene40346:CDS 65.0%
!! AGTGGACTTGGTGGCGGTGG+TGG + chr3.3:89768307-89768326 MS.gene40346:CDS 65.0%
!! ATTGGCGGAGGTGGTGGGCT+TGG + chr3.3:89768529-89768548 MS.gene40346:CDS 65.0%
!! CATGGTGGTGGGATTGGCGG+AGG + chr3.3:89768427-89768446 MS.gene40346:CDS 65.0%
!! CGGTGGTGGCATTGGTGGAG+GGG + chr3.3:89768621-89768640 MS.gene40346:CDS 65.0%
!! GAGGACTTGGTGCTGGGGGA+GGG + chr3.3:89768242-89768261 MS.gene40346:CDS 65.0%
!! GAGGTGGCGGCATTGGTGGA+GGG + chr3.3:89768872-89768891 MS.gene40346:CDS 65.0%
!! GCAGGAGGTGGTGGCGGTAT+TGG + chr3.3:89768715-89768734 MS.gene40346:CDS 65.0%
!! GCAGGAGGTGGTGGTGGCAT+TGG + chr3.3:89768643-89768662 MS.gene40346:CDS 65.0%
!! GCAGGTGGTGGGATTGGAGG+CGG + chr3.3:89768919-89768938 MS.gene40346:CDS 65.0%
!! GCCGGTGGTGGACTTGGTCA+TGG + chr3.3:89768409-89768428 MS.gene40346:CDS 65.0%
!! GGAGCAGGTGGTGGGATTGG+AGG + chr3.3:89768916-89768935 MS.gene40346:CDS 65.0%
!! GGAGGAGGCGGCTTTGGAGT+TGG + chr3.3:89769051-89769070 MS.gene40346:CDS 65.0%
!! GGAGGAGTAGGTGGTGGTGG+GGG + chr3.3:89768445-89768464 MS.gene40346:CDS 65.0%
!! GGAGGCATTGGTGGAGGTGC+AGG + chr3.3:89768349-89768368 MS.gene40346:CDS 65.0%
!! GGAGGGAGTGGACTTGGTGG+CGG + chr3.3:89768301-89768320 MS.gene40346:CDS 65.0%
!! GGAGGTGGAGGACTTGGTGC+TGG + chr3.3:89768235-89768254 MS.gene40346:CDS 65.0%
!! GGAGGTGGTGGCGGTATTGG+TGG + chr3.3:89768718-89768737 MS.gene40346:CDS 65.0%
!! GGAGGTGGTGGGCTTGGTCA+TGG + chr3.3:89768535-89768554 MS.gene40346:CDS 65.0%
!! GGAGGTGGTGGTGGCATTGG+TGG + chr3.3:89768646-89768665 MS.gene40346:CDS 65.0%
!! GGATTTGGTGGTGGTGCCGG+TGG + chr3.3:89768394-89768413 MS.gene40346:CDS 65.0%
!! GGCATTGGTGGAGGAGCAGG+AGG + chr3.3:89768628-89768647 MS.gene40346:CDS 65.0%
!! GGCATTGGTGGAGGTGCAGG+TGG + chr3.3:89768352-89768371 MS.gene40346:CDS 65.0%
!! GGCGGCTTTGGAGTTGGTGC+TGG + chr3.3:89769057-89769076 MS.gene40346:CDS 65.0%
!! GGCGGTATTGGTGGTGGAGC+AGG + chr3.3:89768727-89768746 MS.gene40346:CDS 65.0%
!! GGCGGTGGTATTGGTGCTGG+TGG + chr3.3:89768118-89768137 MS.gene40346:CDS 65.0%
!! GGGATTGGTGGAGGTGCTGG+TGG + chr3.3:89768160-89768179 MS.gene40346:CDS 65.0%
!! GGTGGAGGACTTGGTGCTGG+GGG + chr3.3:89768238-89768257 MS.gene40346:CDS 65.0%
!! GGTGGAGGTGGAGTTGGTGG+TGG + chr3.3:89768193-89768212 MS.gene40346:CDS 65.0%
!! GGTGGCATTGGTGGAGGAGC+AGG + chr3.3:89768625-89768644 MS.gene40346:CDS 65.0%
!! GGTGGCATTGGTGGAGGTGG+AGG + chr3.3:89768283-89768302 MS.gene40346:CDS 65.0%
!! GGTGGCATTGGTGGGGGTCT+CGG + chr3.3:89768211-89768230 MS.gene40346:CDS 65.0%
!! GGTGGCATTGGTGGTGGAGG+AGG + chr3.3:89768655-89768674 MS.gene40346:CDS 65.0%
!! GGTGGCGGTGGTATTGGTGC+TGG + chr3.3:89768115-89768134 MS.gene40346:CDS 65.0%
!! GGTGGTGGCATTGGTGGAGG+TGG + chr3.3:89768280-89768299 MS.gene40346:CDS 65.0%
!! GGTGGTGGCATTGGTGGTGG+AGG + chr3.3:89768652-89768671 MS.gene40346:CDS 65.0%
!! GGTGGTGGCGGTATTGGTGG+TGG + chr3.3:89768721-89768740 MS.gene40346:CDS 65.0%
!! GGTGGTGGGCTTGGTCATGG+TGG + chr3.3:89768322-89768341 MS.gene40346:CDS 65.0%
!! GGTGGTGGTGGCATTGGTGG+TGG + chr3.3:89768649-89768668 MS.gene40346:CDS 65.0%
!! GGTGTTGGAGGGGGCATTGG+TGG + chr3.3:89768574-89768593 MS.gene40346:CDS 65.0%
!! GTAGGTGGTGGCATTGGCGG+AGG + chr3.3:89768517-89768536 MS.gene40346:CDS 65.0%
!! GTAGGTGGTGGTGGGGGTCT+TGG + chr3.3:89768451-89768470 MS.gene40346:CDS 65.0%
!! GTGGACTTGGTGGCGGTGGT+GGG + chr3.3:89768308-89768327 MS.gene40346:CDS 65.0%
!! GTGGCATTGGCGGAGGTGGT+GGG + chr3.3:89768524-89768543 MS.gene40346:CDS 65.0%
!! GTGGCATTGGTGGAGGGGCA+GGG + chr3.3:89768818-89768837 MS.gene40346:CDS 65.0%
!! GTTGGAGGGGGCATTGGTGG+TGG + chr3.3:89768577-89768596 MS.gene40346:CDS 65.0%
!! TGGAGGGGGCATTGGTGGTG+GGG + chr3.3:89768579-89768598 MS.gene40346:CDS 65.0%
!! TGGCATTGGTGGAGGGGCAG+GGG + chr3.3:89768819-89768838 MS.gene40346:CDS 65.0%
!! TTTGGTGGTGGTGCCGGTGG+TGG + chr3.3:89768397-89768416 MS.gene40346:CDS 65.0%
!!! AGGCGGAGGTGGTTTTGGCG+GGG + chr3.3:89768936-89768955 MS.gene40346:CDS 65.0%
!!! GAGGCGGAGGTGGTTTTGGC+GGG + chr3.3:89768935-89768954 MS.gene40346:CDS 65.0%
!!! GCTGGTGGGGGTTTTGGAGG+TGG + chr3.3:89768175-89768194 MS.gene40346:CDS 65.0%
!!! GGAGGAGGTGGTTTTGGCGG+AGG + chr3.3:89769033-89769052 MS.gene40346:CDS 65.0%
!!! GGAGGCGGAGGTGGTTTTGG+CGG + chr3.3:89768934-89768953 MS.gene40346:CDS 65.0%
!!! GGAGGTGCTGGTGGGGGTTT+TGG + chr3.3:89768169-89768188 MS.gene40346:CDS 65.0%
!!! GGAGGTGGTTTTGGCGGAGG+AGG + chr3.3:89769036-89769055 MS.gene40346:CDS 65.0%
!!! GGGGGTTTTGGAGGTGGAGG+TGG + chr3.3:89768181-89768200 MS.gene40346:CDS 65.0%
!!! GGTGCTGGTGGGGGTTTTGG+AGG + chr3.3:89768172-89768191 MS.gene40346:CDS 65.0%
!!! GGTGGGGGTTTTGGAGGTGG+AGG + chr3.3:89768178-89768197 MS.gene40346:CDS 65.0%
!!! GGTGGTTTTGGCGGAGGAGG+CGG + chr3.3:89769039-89769058 MS.gene40346:CDS 65.0%
!!! GGTGGTTTTGGCGGGGGTAG+TGG + chr3.3:89768943-89768962 MS.gene40346:CDS 65.0%
ATTGGGGGAGGAGTCGGCGG+TGG + chr3.3:89769009-89769028 MS.gene40346:CDS 70.0%
ATTGGTGGAGGGGCAGGGGG+TGG + chr3.3:89768823-89768842 MS.gene40346:CDS 70.0%
GCTGGGGGAGGGCTTGGACA+TGG + chr3.3:89768253-89768272 MS.gene40346:CDS 70.0%
GGTGGAGCAGGAGGTGGAGG+TGG + chr3.3:89768739-89768758 MS.gene40346:CDS 70.0%
GGTGGAGGAGCAGGAGGTGG+TGG + chr3.3:89768634-89768653 MS.gene40346:CDS 70.0%
GGTGGGATTGGAGGCGGAGG+TGG + chr3.3:89768925-89768944 MS.gene40346:CDS 70.0%
! GCAGGAGGAGGTGGCGGCAT+TGG + chr3.3:89768865-89768884 MS.gene40346:CDS 70.0%
! GGAGGAGCAGGAGGTGGTGG+CGG + chr3.3:89768637-89768656 MS.gene40346:CDS 70.0%
! GGAGGAGCAGGAGGTGGTGG+TGG + chr3.3:89768637-89768656 MS.gene40346:CDS 70.0%
! GGAGGAGGTGGCGGCATTGG+TGG + chr3.3:89768868-89768887 MS.gene40346:CDS 70.0%
! GGCATTGGGGGAGGAGTCGG+CGG + chr3.3:89769006-89769025 MS.gene40346:CDS 70.0%
! GGCGGAGGAGTAGGTGGTGG+TGG + chr3.3:89768442-89768461 MS.gene40346:CDS 70.0%
! GGCGGGGGTAGTGGTGTAGG+CGG + chr3.3:89768952-89768971 MS.gene40346:CDS 70.0%
! GGGGGTAGTGGTGTAGGCGG+AGG + chr3.3:89768955-89768974 MS.gene40346:CDS 70.0%
!! CTTGGTGCTGGGGGAGGGCT+TGG + chr3.3:89768247-89768266 MS.gene40346:CDS 70.0%
!! CTTGGTGGCGGTGGTGGGCT+TGG + chr3.3:89768313-89768332 MS.gene40346:CDS 70.0%
!! GGAGGACTTGGTGCTGGGGG+AGG + chr3.3:89768241-89768260 MS.gene40346:CDS 70.0%
!! GGAGGGGGCATTGGTGGTGG+GGG + chr3.3:89768580-89768599 MS.gene40346:CDS 70.0%
!! GGAGGTGGCGGCATTGGTGG+AGG + chr3.3:89768871-89768890 MS.gene40346:CDS 70.0%
!! GGCATTGGTGGAGGGGCAGG+AGG + chr3.3:89768820-89768839 MS.gene40346:CDS 70.0%
!! GGCATTGGTGGAGGGGCAGG+GGG + chr3.3:89768820-89768839 MS.gene40346:CDS 70.0%
!! GGCATTGGTGGGGGAGCAGG+AGG + chr3.3:89768850-89768869 MS.gene40346:CDS 70.0%
!! GGCATTGGTGGGGGTCTCGG+AGG + chr3.3:89768214-89768233 MS.gene40346:CDS 70.0%
!! GGCGGTGGTGGGCTTGGTCA+TGG + chr3.3:89768319-89768338 MS.gene40346:CDS 70.0%
!! GGGAGTGGACTTGGTGGCGG+TGG + chr3.3:89768304-89768323 MS.gene40346:CDS 70.0%
!! GGTGGCATTGGCGGAGGTGG+TGG + chr3.3:89768523-89768542 MS.gene40346:CDS 70.0%
!! GGTGGCATTGGTGGAGGGGC+AGG + chr3.3:89768817-89768836 MS.gene40346:CDS 70.0%
!! GGTGGTGCCGGTGGTGGACT+TGG + chr3.3:89768403-89768422 MS.gene40346:CDS 70.0%
!! GGTGGTGGAGCAGGAGGTGG+AGG + chr3.3:89768736-89768755 MS.gene40346:CDS 70.0%
!! GGTGGTGGCATTGGCGGAGG+TGG + chr3.3:89768520-89768539 MS.gene40346:CDS 70.0%
!! GGTGGTGGGATTGGAGGCGG+AGG + chr3.3:89768922-89768941 MS.gene40346:CDS 70.0%
!! GGTGGTGGGGGTCTTGGAGG+TGG + chr3.3:89768457-89768476 MS.gene40346:CDS 70.0%
!! GGTGGTGGTGGGGGTCTTGG+AGG + chr3.3:89768454-89768473 MS.gene40346:CDS 70.0%
!! GGTGTAGGCGGAGGTGCTGG+TGG + chr3.3:89768964-89768983 MS.gene40346:CDS 70.0%
!! GTAGGCGGAGGTGCTGGTGG+AGG + chr3.3:89768967-89768986 MS.gene40346:CDS 70.0%
!!! GGCGGAGGTGGTTTTGGCGG+GGG + chr3.3:89768937-89768956 MS.gene40346:CDS 70.0%
CTAAGGGCCGCCGCCACCAC+CGG - chr3.3:89769103-89769122 None:intergenic 75.0%
GGAGGGGCAGGAGGTGGAGG+TGG + chr3.3:89768889-89768908 MS.gene40346:CDS 75.0%
GGGGGAGCAGGAGGAGGTGG+CGG + chr3.3:89768859-89768878 MS.gene40346:CDS 75.0%
GGGGGTCTCGGAGGAGGTGG+AGG + chr3.3:89768223-89768242 MS.gene40346:CDS 75.0%
GGTGGAGGGGCAGGAGGTGG+AGG + chr3.3:89768886-89768905 MS.gene40346:CDS 75.0%
GGTGGGGGAGCAGGAGGAGG+TGG + chr3.3:89768856-89768875 MS.gene40346:CDS 75.0%
GGTGGGGGTCTCGGAGGAGG+TGG + chr3.3:89768220-89768239 MS.gene40346:CDS 75.0%
! GGAGGAGTCGGCGGTGGTGG+AGG + chr3.3:89769015-89769034 MS.gene40346:CDS 75.0%
! GGAGTTGGCGCTGGAGCCGG+TGG + chr3.3:89769084-89769103 MS.gene40346:CDS 75.0%
! GTTGGCGCTGGAGCCGGTGG+TGG + chr3.3:89769087-89769106 MS.gene40346:CDS 75.0%
!! GGAGTCGGCGGTGGTGGAGG+AGG + chr3.3:89769018-89769037 MS.gene40346:CDS 75.0%
!! GGCGGCATTGGTGGAGGGGC+AGG + chr3.3:89768877-89768896 MS.gene40346:CDS 75.0%
!! GGCGGCATTGGTGGGGGAGC+AGG + chr3.3:89768847-89768866 MS.gene40346:CDS 75.0%
!! GGGGGCATTGGTGGTGGGGG+AGG + chr3.3:89768583-89768602 MS.gene40346:CDS 75.0%
!! GGGGTGGCGGCGGCATTGGT+GGG + chr3.3:89768839-89768858 MS.gene40346:CDS 75.0%
!! GGGTGGCGGCGGCATTGGTG+GGG + chr3.3:89768840-89768859 MS.gene40346:CDS 75.0%
!! GGTGGCGGCGGCATTGGTGG+GGG + chr3.3:89768841-89768860 MS.gene40346:CDS 75.0%
!! GTCGGCGGTGGTGGAGGAGG+TGG + chr3.3:89769021-89769040 MS.gene40346:CDS 75.0%
! GGGGGAGGAGTCGGCGGTGG+TGG + chr3.3:89769012-89769031 MS.gene40346:CDS 80.0%
! GGTGGAGGGGCAGGGGGTGG+CGG + chr3.3:89768826-89768845 MS.gene40346:CDS 80.0%
!! GCAGGGGGTGGCGGCGGCAT+TGG + chr3.3:89768835-89768854 MS.gene40346:CDS 80.0%
!! GGCGCTGGAGCCGGTGGTGG+CGG + chr3.3:89769090-89769109 MS.gene40346:CDS 80.0%
!! GGGGGTGGCGGCGGCATTGG+TGG + chr3.3:89768838-89768857 MS.gene40346:CDS 80.0%
!!! GCTGGAGCCGGTGGTGGCGG+CGG + chr3.3:89769093-89769112 MS.gene40346:CDS 80.0%
!! GGAGGGGCAGGGGGTGGCGG+CGG + chr3.3:89768829-89768848 MS.gene40346:CDS 85.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 89767938 89769122 89767938 ID=MS.gene40346
chr3.3 mRNA 89767938 89769122 89767938 ID=MS.gene40346.t1;Parent=MS.gene40346
chr3.3 exon 89767938 89769122 89767938 ID=MS.gene40346.t1.exon1;Parent=MS.gene40346.t1
chr3.3 CDS 89767938 89769122 89767938 ID=cds.MS.gene40346.t1;Parent=MS.gene40346.t1
Gene Sequence

>MS.gene40346

ATGAGAGTTTTTTCTAATGACGTTGTGGTTGCTTTCATCCTGTGCAATATTCTACTTGTCACTGGCTTGTTTGAAGTGGCGGATGGTAGACAAGTTAAGGATGATAAGCATTTGATTCATCCACCATTCATTCATCCACCACATTTGTTAGGTCCTGGATTCAAACATGGAAGGTTTGGTGGCGGTGGTATTGGTGCTGGTGGAGGTTTAGGACTAGGAGGTGGGATTGGTGGAGGTGCTGGTGGGGGTTTTGGAGGTGGAGGTGGAGTTGGTGGTGGCATTGGTGGGGGTCTCGGAGGAGGTGGAGGACTTGGTGCTGGGGGAGGGCTTGGACATGGTATTGGTGGTGGCATTGGTGGAGGTGGAGGGAGTGGACTTGGTGGCGGTGGTGGGCTTGGTCATGGTGTTGGAGGAGGCATTGGTGGAGGTGCAGGTGGTGGTTTAGGAGGTGGAGGTGGATTTGGTGGTGGTGCCGGTGGTGGACTTGGTCATGGTGGTGGGATTGGCGGAGGAGTAGGTGGTGGTGGGGGTCTTGGAGGTGGAGATGGACTTGGTGGTGGTGGTGGGATTGGACATGGTGTAGGTGGTGGCATTGGCGGAGGTGGTGGGCTTGGTCATGGTGGAGGATTAGGTCATGGTGTTGGAGGGGGCATTGGTGGTGGGGGAGGATTGGGTCATGGTATCGGTGGTGGCATTGGTGGAGGAGCAGGAGGTGGTGGTGGCATTGGTGGTGGAGGAGGATTGGGTCATGGTATTGGTGGTGGCATTGGTGGAGGAGCAGGAGGTGGTGGCGGTATTGGTGGTGGAGCAGGAGGTGGAGGTGGATTAGGCCATGGCATAGGTGTTGGTGGTGGAGGTGGATTAGGTCATGGTATCGGTGGTGGCATTGGTGGAGGGGCAGGGGGTGGCGGCGGCATTGGTGGGGGAGCAGGAGGAGGTGGCGGCATTGGTGGAGGGGCAGGAGGTGGAGGTGGTATAGGAGCAGGTGGTGGGATTGGAGGCGGAGGTGGTTTTGGCGGGGGTAGTGGTGTAGGCGGAGGTGCTGGTGGAGGATTTGGAAAAGGAGTAGGCATTGGGGGAGGAGTCGGCGGTGGTGGAGGAGGTGGTTTTGGCGGAGGAGGCGGCTTTGGAGTTGGTGCTGGTATTGGAGTTGGCGCTGGAGCCGGTGGTGGCGGCGGCCCTTAG

Protein sequence

>MS.gene40346.t1

MRVFSNDVVVAFILCNILLVTGLFEVADGRQVKDDKHLIHPPFIHPPHLLGPGFKHGRFGGGGIGAGGGLGLGGGIGGGAGGGFGGGGGVGGGIGGGLGGGGGLGAGGGLGHGIGGGIGGGGGSGLGGGGGLGHGVGGGIGGGAGGGLGGGGGFGGGAGGGLGHGGGIGGGVGGGGGLGGGDGLGGGGGIGHGVGGGIGGGGGLGHGGGLGHGVGGGIGGGGGLGHGIGGGIGGGAGGGGGIGGGGGLGHGIGGGIGGGAGGGGGIGGGAGGGGGLGHGIGVGGGGGLGHGIGGGIGGGAGGGGGIGGGAGGGGGIGGGAGGGGGIGAGGGIGGGGGFGGGSGVGGGAGGGFGKGVGIGGGVGGGGGGGFGGGGGFGVGAGIGVGAGAGGGGGP