Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40376.t1 | XP_003603554.2 | 99.1 | 704 | 6 | 0 | 1 | 704 | 23 | 726 | 0.00E+00 | 1389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40376.t1 | Q9SJA4 | 71.4 | 683 | 187 | 2 | 24 | 700 | 45 | 725 | 3.0e-282 | 972.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40376.t1 | G7J2T6 | 99.1 | 704 | 6 | 0 | 1 | 704 | 23 | 726 | 0.0e+00 | 1389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40376 | MS.gene45237 | PPI |
| MS.gene40376 | MS.gene03802 | PPI |
| MS.gene97592 | MS.gene40376 | PPI |
| MS.gene40376 | MS.gene057537 | PPI |
| MS.gene40376 | MS.gene78111 | PPI |
| MS.gene40376 | MS.gene99360 | PPI |
| MS.gene40376 | MS.gene66800 | PPI |
| MS.gene40376 | MS.gene021807 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40376.t1 | MTR_3g109030 | 99.148 | 704 | 6 | 0 | 1 | 704 | 23 | 726 | 0.0 | 1451 |
| MS.gene40376.t1 | MTR_2g460590 | 74.963 | 671 | 161 | 5 | 35 | 704 | 27 | 691 | 0.0 | 1050 |
| MS.gene40376.t1 | MTR_7g034605 | 62.310 | 658 | 223 | 7 | 47 | 698 | 40 | 678 | 0.0 | 857 |
| MS.gene40376.t1 | MTR_3g088875 | 59.104 | 670 | 254 | 8 | 46 | 703 | 31 | 692 | 0.0 | 808 |
| MS.gene40376.t1 | MTR_2g094860 | 57.485 | 668 | 253 | 7 | 38 | 700 | 62 | 703 | 0.0 | 775 |
| MS.gene40376.t1 | MTR_4g058730 | 62.326 | 576 | 207 | 4 | 38 | 611 | 44 | 611 | 0.0 | 751 |
| MS.gene40376.t1 | MTR_4g130820 | 55.126 | 673 | 266 | 9 | 39 | 703 | 87 | 731 | 0.0 | 725 |
| MS.gene40376.t1 | MTR_1g064240 | 53.313 | 664 | 292 | 6 | 38 | 698 | 58 | 706 | 0.0 | 721 |
| MS.gene40376.t1 | MTR_1g028370 | 53.144 | 668 | 269 | 10 | 48 | 702 | 80 | 716 | 0.0 | 711 |
| MS.gene40376.t1 | MTR_3g091080 | 53.223 | 667 | 269 | 9 | 48 | 702 | 78 | 713 | 0.0 | 706 |
| MS.gene40376.t1 | MTR_7g117310 | 49.852 | 676 | 277 | 11 | 48 | 700 | 80 | 716 | 0.0 | 638 |
| MS.gene40376.t1 | MTR_7g117310 | 49.852 | 676 | 277 | 11 | 48 | 700 | 92 | 728 | 0.0 | 637 |
| MS.gene40376.t1 | MTR_7g117310 | 49.852 | 676 | 277 | 11 | 48 | 700 | 26 | 662 | 0.0 | 637 |
| MS.gene40376.t1 | MTR_8g027755 | 47.951 | 659 | 305 | 8 | 51 | 697 | 85 | 717 | 0.0 | 624 |
| MS.gene40376.t1 | MTR_6g477760 | 40.809 | 593 | 316 | 12 | 51 | 624 | 123 | 699 | 1.35e-132 | 407 |
| MS.gene40376.t1 | MTR_5g007630 | 40.536 | 597 | 311 | 15 | 51 | 630 | 172 | 741 | 7.75e-131 | 404 |
| MS.gene40376.t1 | MTR_8g464570 | 39.562 | 594 | 316 | 14 | 52 | 623 | 63 | 635 | 8.03e-129 | 397 |
| MS.gene40376.t1 | MTR_6g075440 | 37.124 | 598 | 334 | 14 | 51 | 628 | 169 | 744 | 2.36e-126 | 393 |
| MS.gene40376.t1 | MTR_6g075440 | 37.124 | 598 | 334 | 14 | 51 | 628 | 169 | 744 | 2.73e-126 | 394 |
| MS.gene40376.t1 | MTR_6g075290 | 39.626 | 588 | 317 | 11 | 46 | 615 | 188 | 755 | 1.13e-120 | 379 |
| MS.gene40376.t1 | MTR_2g081110 | 38.031 | 589 | 333 | 15 | 49 | 623 | 61 | 631 | 1.26e-116 | 365 |
| MS.gene40376.t1 | MTR_7g012260 | 37.607 | 585 | 349 | 9 | 50 | 625 | 108 | 685 | 5.38e-113 | 357 |
| MS.gene40376.t1 | MTR_6g075290 | 39.891 | 549 | 296 | 11 | 85 | 615 | 21 | 553 | 7.58e-111 | 347 |
| MS.gene40376.t1 | MTR_6g075290 | 40.111 | 541 | 290 | 10 | 93 | 615 | 190 | 714 | 7.17e-109 | 347 |
| MS.gene40376.t1 | MTR_6g075390 | 37.057 | 564 | 320 | 14 | 50 | 597 | 114 | 658 | 3.68e-107 | 340 |
| MS.gene40376.t1 | MTR_6g075410 | 32.759 | 580 | 357 | 12 | 50 | 615 | 97 | 657 | 8.65e-94 | 305 |
| MS.gene40376.t1 | MTR_6g076060 | 36.059 | 477 | 275 | 12 | 172 | 632 | 14 | 476 | 4.07e-82 | 270 |
| MS.gene40376.t1 | MTR_2g094810 | 64.220 | 109 | 39 | 0 | 134 | 242 | 12 | 120 | 7.95e-42 | 148 |
| MS.gene40376.t1 | MTR_6g075320 | 32.520 | 123 | 79 | 1 | 50 | 172 | 148 | 266 | 1.75e-20 | 93.2 |
| MS.gene40376.t1 | MTR_6g075460 | 41.379 | 87 | 50 | 1 | 550 | 635 | 45 | 131 | 3.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40376.t1 | AT2G24610 | 71.449 | 683 | 187 | 2 | 24 | 700 | 45 | 725 | 0.0 | 1020 |
| MS.gene40376.t1 | AT2G24610 | 71.449 | 683 | 187 | 2 | 24 | 700 | 60 | 740 | 0.0 | 1017 |
| MS.gene40376.t1 | AT4G30360 | 68.835 | 661 | 195 | 5 | 47 | 703 | 67 | 720 | 0.0 | 953 |
| MS.gene40376.t1 | AT5G14870 | 59.704 | 675 | 249 | 6 | 47 | 703 | 36 | 705 | 0.0 | 842 |
| MS.gene40376.t1 | AT3G48010 | 59.940 | 669 | 244 | 7 | 48 | 697 | 41 | 704 | 0.0 | 813 |
| MS.gene40376.t1 | AT2G28260 | 56.410 | 663 | 250 | 6 | 38 | 700 | 15 | 638 | 0.0 | 757 |
| MS.gene40376.t1 | AT2G28260 | 55.588 | 680 | 256 | 7 | 28 | 700 | 38 | 678 | 0.0 | 757 |
| MS.gene40376.t1 | AT1G15990 | 55.804 | 672 | 276 | 11 | 39 | 700 | 78 | 738 | 0.0 | 733 |
| MS.gene40376.t1 | AT5G57940 | 53.502 | 671 | 274 | 7 | 39 | 700 | 76 | 717 | 0.0 | 715 |
| MS.gene40376.t1 | AT5G57940 | 53.502 | 671 | 274 | 7 | 39 | 700 | 76 | 717 | 0.0 | 715 |
| MS.gene40376.t1 | AT5G57940 | 53.502 | 671 | 274 | 7 | 39 | 700 | 69 | 710 | 0.0 | 714 |
| MS.gene40376.t1 | AT1G19780 | 54.451 | 674 | 292 | 7 | 39 | 704 | 85 | 751 | 0.0 | 712 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 64 | 718 | 0.0 | 708 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 91 | 745 | 0.0 | 708 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 91 | 745 | 0.0 | 708 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 91 | 745 | 0.0 | 708 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 91 | 745 | 0.0 | 708 |
| MS.gene40376.t1 | AT2G23980 | 53.314 | 679 | 276 | 6 | 39 | 700 | 91 | 745 | 0.0 | 708 |
| MS.gene40376.t1 | AT4G30560 | 53.869 | 672 | 268 | 9 | 39 | 700 | 91 | 730 | 0.0 | 705 |
| MS.gene40376.t1 | AT4G30560 | 53.869 | 672 | 268 | 9 | 39 | 700 | 65 | 704 | 0.0 | 705 |
| MS.gene40376.t1 | AT4G30560 | 53.869 | 672 | 268 | 9 | 39 | 700 | 65 | 704 | 0.0 | 705 |
| MS.gene40376.t1 | AT4G30560 | 53.869 | 672 | 268 | 9 | 39 | 700 | 65 | 704 | 0.0 | 705 |
| MS.gene40376.t1 | AT4G30560 | 53.869 | 672 | 268 | 9 | 39 | 700 | 91 | 730 | 0.0 | 705 |
| MS.gene40376.t1 | AT2G23980 | 51.709 | 702 | 275 | 7 | 39 | 700 | 91 | 768 | 0.0 | 695 |
| MS.gene40376.t1 | AT2G23980 | 51.709 | 702 | 275 | 7 | 39 | 700 | 91 | 768 | 0.0 | 695 |
| MS.gene40376.t1 | AT2G23980 | 51.709 | 702 | 275 | 7 | 39 | 700 | 91 | 768 | 0.0 | 695 |
| MS.gene40376.t1 | AT2G23980 | 51.709 | 702 | 275 | 7 | 39 | 700 | 91 | 768 | 0.0 | 695 |
| MS.gene40376.t1 | AT5G53130 | 52.474 | 667 | 267 | 7 | 50 | 700 | 83 | 715 | 0.0 | 692 |
| MS.gene40376.t1 | AT1G01340 | 48.755 | 683 | 324 | 7 | 29 | 704 | 47 | 710 | 0.0 | 668 |
| MS.gene40376.t1 | AT4G01010 | 50.379 | 659 | 290 | 10 | 48 | 699 | 65 | 693 | 0.0 | 667 |
| MS.gene40376.t1 | AT4G01010 | 50.379 | 659 | 290 | 10 | 48 | 699 | 65 | 693 | 0.0 | 667 |
| MS.gene40376.t1 | AT1G01340 | 48.755 | 683 | 324 | 7 | 29 | 704 | 42 | 705 | 0.0 | 667 |
| MS.gene40376.t1 | AT2G46430 | 48.182 | 660 | 307 | 8 | 50 | 700 | 71 | 704 | 0.0 | 625 |
| MS.gene40376.t1 | AT2G46430 | 48.182 | 660 | 307 | 8 | 50 | 700 | 71 | 704 | 0.0 | 625 |
| MS.gene40376.t1 | AT1G19780 | 55.166 | 542 | 232 | 6 | 171 | 704 | 2 | 540 | 0.0 | 577 |
| MS.gene40376.t1 | AT2G46440 | 43.699 | 611 | 310 | 9 | 62 | 667 | 40 | 621 | 3.14e-166 | 491 |
| MS.gene40376.t1 | AT2G46450 | 38.556 | 651 | 341 | 12 | 62 | 698 | 40 | 645 | 4.87e-148 | 446 |
| MS.gene40376.t1 | AT2G46450 | 38.556 | 651 | 341 | 12 | 62 | 698 | 40 | 645 | 4.87e-148 | 446 |
| MS.gene40376.t1 | AT2G46450 | 37.481 | 651 | 325 | 14 | 62 | 698 | 27 | 609 | 1.82e-137 | 417 |
| MS.gene40376.t1 | AT2G46450 | 37.481 | 651 | 325 | 14 | 62 | 698 | 40 | 622 | 2.06e-137 | 417 |
| MS.gene40376.t1 | AT2G46440 | 47.742 | 465 | 216 | 7 | 208 | 667 | 1 | 443 | 2.48e-136 | 408 |
| MS.gene40376.t1 | AT5G54250 | 37.604 | 601 | 344 | 12 | 42 | 623 | 68 | 656 | 2.58e-122 | 380 |
| MS.gene40376.t1 | AT5G54250 | 37.604 | 601 | 344 | 12 | 42 | 623 | 68 | 656 | 2.58e-122 | 380 |
| MS.gene40376.t1 | AT5G54250 | 37.604 | 601 | 344 | 12 | 42 | 623 | 68 | 656 | 2.58e-122 | 380 |
| MS.gene40376.t1 | AT3G17690 | 38.103 | 580 | 326 | 15 | 51 | 617 | 158 | 717 | 5.11e-120 | 376 |
| MS.gene40376.t1 | AT5G54250 | 37.105 | 601 | 342 | 13 | 42 | 623 | 68 | 651 | 2.28e-117 | 368 |
| MS.gene40376.t1 | AT5G15410 | 39.229 | 571 | 329 | 10 | 51 | 609 | 112 | 676 | 2.58e-116 | 366 |
| MS.gene40376.t1 | AT5G15410 | 39.229 | 571 | 329 | 10 | 51 | 609 | 113 | 677 | 5.11e-116 | 365 |
| MS.gene40376.t1 | AT3G17700 | 38.957 | 575 | 314 | 15 | 51 | 609 | 192 | 745 | 1.27e-114 | 363 |
| MS.gene40376.t1 | AT3G17690 | 37.854 | 494 | 284 | 10 | 51 | 540 | 158 | 632 | 2.95e-105 | 335 |
| MS.gene40376.t1 | AT3G17700 | 38.922 | 501 | 281 | 12 | 51 | 547 | 192 | 671 | 4.90e-102 | 327 |
| MS.gene40376.t1 | AT3G17690 | 36.658 | 371 | 219 | 8 | 51 | 417 | 158 | 516 | 1.24e-70 | 239 |
Find 0 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGATATTATTTACATAT+AGG | + | 24210:19760-19779 | MS.gene40376:intron | 10.0% |
| !! | ACATTGTAAATAAAATATCT+AGG | - | 24210:20664-20683 | MS.gene40376:intergenic | 15.0% |
| !! | ATAAATCAAAAACAAATGAA+TGG | + | 24210:20066-20085 | MS.gene40376:intron | 15.0% |
| !! | CAAAATCTTGTATTATATAT+TGG | - | 24210:19995-20014 | MS.gene40376:intergenic | 15.0% |
| !! | TATTGTCTCAAAAAAAAAAA+GGG | - | 24210:19971-19990 | MS.gene40376:intergenic | 15.0% |
| !! | TTATTGTCTCAAAAAAAAAA+AGG | - | 24210:19972-19991 | MS.gene40376:intergenic | 15.0% |
| !!! | CTAGCTTTAAATTATAAAAA+AGG | - | 24210:20623-20642 | MS.gene40376:intergenic | 15.0% |
| !!! | TTTTTTCTTGTTCTAATTAA+AGG | + | 24210:19908-19927 | MS.gene40376:intron | 15.0% |
| !! | AAAAAAAATCCTATACTTGT+AGG | + | 24210:20687-20706 | MS.gene40376:intron | 20.0% |
| !! | ATTGAGAAAGAAAAAAAACA+AGG | - | 24210:21037-21056 | MS.gene40376:intergenic | 20.0% |
| !! | TTGAGAAAGAAAAAAAACAA+GGG | - | 24210:21036-21055 | MS.gene40376:intergenic | 20.0% |
| ! | AAATGTGCATTGTTTATCAA+TGG | + | 24210:21300-21319 | MS.gene40376:intron | 25.0% |
| ! | ACCATATAACATCTCTTTAA+GGG | - | 24210:20326-20345 | MS.gene40376:intergenic | 25.0% |
| ! | ACTATTATAGTTCAAATGCA+AGG | - | 24210:21887-21906 | MS.gene40376:intergenic | 25.0% |
| ! | ACTGAACAAAGATTAATTGT+TGG | - | 24210:21672-21691 | MS.gene40376:intergenic | 25.0% |
| ! | ATAGATAAGTTACGTAACAT+TGG | - | 24210:19947-19966 | MS.gene40376:intergenic | 25.0% |
| ! | ATGAATGGAATAGTTAGAAA+TGG | + | 24210:20081-20100 | MS.gene40376:intron | 25.0% |
| ! | CATCATAAAATTTACTCAGA+GGG | - | 24210:19878-19897 | MS.gene40376:intergenic | 25.0% |
| ! | CTGAACAAAGATTAATTGTT+GGG | - | 24210:21671-21690 | MS.gene40376:intergenic | 25.0% |
| ! | GAAAAATCATATACAATCTG+GGG | - | 24210:20472-20491 | MS.gene40376:intergenic | 25.0% |
| ! | GAAATGTATTCTTAACTACT+TGG | + | 24210:20795-20814 | MS.gene40376:CDS | 25.0% |
| ! | GATTCAGAAAATTCTTAATC+CGG | + | 24210:19233-19252 | MS.gene40376:CDS | 25.0% |
| ! | GGAAAAATCATATACAATCT+GGG | - | 24210:20473-20492 | MS.gene40376:intergenic | 25.0% |
| ! | TAAGAACTGAAAATACACAA+AGG | - | 24210:21150-21169 | MS.gene40376:intergenic | 25.0% |
| ! | TAATAAGAATTCATCATGCA+TGG | + | 24210:19488-19507 | MS.gene40376:CDS | 25.0% |
| ! | TACCATATAACATCTCTTTA+AGG | - | 24210:20327-20346 | MS.gene40376:intergenic | 25.0% |
| ! | TAGTTAAGAATACATTTCAC+AGG | - | 24210:20793-20812 | MS.gene40376:intergenic | 25.0% |
| ! | TATTCTATCAAAGTCATGTT+TGG | - | 24210:21848-21867 | MS.gene40376:intergenic | 25.0% |
| ! | TCATCATAAAATTTACTCAG+AGG | - | 24210:19879-19898 | MS.gene40376:intergenic | 25.0% |
| ! | TGAACAAGCAATATATCAAA+TGG | + | 24210:22474-22493 | MS.gene40376:CDS | 25.0% |
| ! | TGGAAAAATCATATACAATC+TGG | - | 24210:20474-20493 | MS.gene40376:intergenic | 25.0% |
| ! | TTAACTATCTGAGAACTTAA+TGG | - | 24210:20494-20513 | MS.gene40376:intergenic | 25.0% |
| !! | ACCTTAAACTTTTCAAAAGT+TGG | - | 24210:19315-19334 | MS.gene40376:intergenic | 25.0% |
| !! | GTTTTCAACTATGGAATTTT+TGG | + | 24210:20904-20923 | MS.gene40376:CDS | 25.0% |
| !! | TGTTTAGTGTGTCTATTTTA+TGG | - | 24210:20113-20132 | MS.gene40376:intergenic | 25.0% |
| !! | TTGTGTATTTTCAGTTCTTA+TGG | + | 24210:21150-21169 | MS.gene40376:intron | 25.0% |
| !!! | ATGGTTACTGATTTGAATTT+AGG | + | 24210:19507-19526 | MS.gene40376:CDS | 25.0% |
| !!! | TCCAACTTTTGAAAAGTTTA+AGG | + | 24210:19311-19330 | MS.gene40376:CDS | 25.0% |
| AACAAAGATTAATTGTTGGG+AGG | - | 24210:21668-21687 | MS.gene40375:intergenic | 30.0% | |
| AATCTTATGTTATCAGTCAG+TGG | + | 24210:20034-20053 | MS.gene40376:intron | 30.0% | |
| ACAAGCAATATATCAAATGG+AGG | + | 24210:22477-22496 | MS.gene40376:CDS | 30.0% | |
| ACACAAGTAAAACAGAATCT+AGG | + | 24210:22544-22563 | MS.gene40376:CDS | 30.0% | |
| ACTTGTACTGAACAAATCTT+CGG | - | 24210:21534-21553 | MS.gene40376:intergenic | 30.0% | |
| ATCATCCATTTGTGAGAAAA+AGG | - | 24210:21966-21985 | MS.gene40376:intergenic | 30.0% | |
| ATTGTTGGTATGATCATCAT+GGG | - | 24210:20417-20436 | MS.gene40376:intergenic | 30.0% | |
| ATTTGCAATCTATTACTGTG+AGG | + | 24210:21425-21444 | MS.gene40376:CDS | 30.0% | |
| CAATACAAAACCAAGCAAAT+AGG | - | 24210:20289-20308 | MS.gene40376:intergenic | 30.0% | |
| CACAGTAATAGATTGCAAAT+AGG | - | 24210:21425-21444 | MS.gene40376:intergenic | 30.0% | |
| CACTAAACACAATACAAATG+CGG | + | 24210:20193-20212 | MS.gene40376:intron | 30.0% | |
| GAGTTATGTTTGAGAACTTA+TGG | - | 24210:21762-21781 | MS.gene40376:intergenic | 30.0% | |
| GATGGTAGATAGAAAAACAA+TGG | - | 24210:19453-19472 | MS.gene40376:intergenic | 30.0% | |
| GTACTTCTCTATAAACATAG+AGG | - | 24210:20956-20975 | MS.gene40376:intergenic | 30.0% | |
| TATTGCTTGTTCATCAATGA+AGG | - | 24210:22467-22486 | MS.gene40376:intergenic | 30.0% | |
| TCATCCATTTGTGAGAAAAA+GGG | - | 24210:21965-21984 | MS.gene40376:intergenic | 30.0% | |
| TCCCTTAAAGAGATGTTATA+TGG | + | 24210:20322-20341 | MS.gene40376:intron | 30.0% | |
| TGAACATGGTCATAAAGTTT+AGG | + | 24210:19577-19596 | MS.gene40376:CDS | 30.0% | |
| TGTTTGAATTCAACAAACTG+CGG | - | 24210:22522-22541 | MS.gene40376:intergenic | 30.0% | |
| TTAACTGTTCTTGTAGAAGA+AGG | - | 24210:22229-22248 | MS.gene40376:intergenic | 30.0% | |
| ! | AGTAGCAAAGTTTTCAACTA+TGG | + | 24210:20895-20914 | MS.gene40376:CDS | 30.0% |
| ! | GAATTGTTGTCACATGTTTT+CGG | + | 24210:19529-19548 | MS.gene40376:CDS | 30.0% |
| ! | TAGATTCTGTTTTACTTGTG+TGG | - | 24210:22545-22564 | MS.gene40376:intergenic | 30.0% |
| !! | AGAACTTGAGGTTTGATTTT+AGG | + | 24210:21001-21020 | MS.gene40376:intron | 30.0% |
| !! | AGATGCTTTTTATCATCAGA+GGG | + | 24210:22074-22093 | MS.gene40376:CDS | 30.0% |
| !! | ATATCTTTCTGGAATGGAAA+AGG | + | 24210:19388-19407 | MS.gene40376:CDS | 30.0% |
| !! | GGTATTTGTTGTCAATTGAA+AGG | + | 24210:20725-20744 | MS.gene40376:CDS | 30.0% |
| !! | TAATGCTTGCTTTTCTTTGT+TGG | + | 24210:20351-20370 | MS.gene40376:intron | 30.0% |
| !! | TATCTTTCTGGAATGGAAAA+GGG | + | 24210:19389-19408 | MS.gene40376:CDS | 30.0% |
| !! | TCTGATGATAAAAAGCATCT+CGG | - | 24210:22074-22093 | MS.gene40376:intergenic | 30.0% |
| !! | TGTGATTTGGTTTATTATGC+CGG | + | 24210:20379-20398 | MS.gene40376:CDS | 30.0% |
| !! | TTGAAAACTTTGCTACTTTC+AGG | - | 24210:20892-20911 | MS.gene40376:intergenic | 30.0% |
| !!! | ATTTTTTGAGCCTATTTGCT+TGG | + | 24210:20276-20295 | MS.gene40376:intron | 30.0% |
| AACTCTATTACCTTAAAGCC+TGG | + | 24210:22142-22161 | MS.gene40376:CDS | 35.0% | |
| AAGAAGAGAATTCTTGATCC+AGG | + | 24210:19360-19379 | MS.gene40376:CDS | 35.0% | |
| AGAAAAAGGGAACCTGTAAT+TGG | - | 24210:21952-21971 | MS.gene40376:intergenic | 35.0% | |
| ATATCAAATGGAGGAACATG+AGG | + | 24210:22486-22505 | MS.gene40376:CDS | 35.0% | |
| ATCCTATACTTGTAGGTCTT+AGG | + | 24210:20694-20713 | MS.gene40376:intron | 35.0% | |
| CAGAAAATTCTTAATCCGGA+AGG | + | 24210:19237-19256 | MS.gene40376:CDS | 35.0% | |
| CATTGTTGGTATGATCATCA+TGG | - | 24210:20418-20437 | MS.gene40376:intergenic | 35.0% | |
| CTCAATATCTATAGCCTACA+TGG | - | 24210:21345-21364 | MS.gene40376:intergenic | 35.0% | |
| GATTGCAGTACTATAAACGA+TGG | + | 24210:20817-20836 | MS.gene40376:CDS | 35.0% | |
| GCAATACTCATAGCTATCTT+AGG | + | 24210:21216-21235 | MS.gene40376:CDS | 35.0% | |
| GTGATAGTATGCAAGAACAT+AGG | - | 24210:19419-19438 | MS.gene40376:intergenic | 35.0% | |
| TAAAAGATTGTAAGCAGCTC+CGG | - | 24210:20549-20568 | MS.gene40376:intergenic | 35.0% | |
| TCAAGAATTCTCTTCTTCCA+TGG | - | 24210:19357-19376 | MS.gene40376:intergenic | 35.0% | |
| TCCAAGAAAATCATGAACCA+TGG | + | 24210:19337-19356 | MS.gene40376:CDS | 35.0% | |
| TCCAATGGTAAGAGTAGAAA+CGG | - | 24210:22354-22373 | MS.gene40376:intergenic | 35.0% | |
| TCCTATACTTGTAGGTCTTA+GGG | + | 24210:20695-20714 | MS.gene40376:intron | 35.0% | |
| TCTCAGATAGTTAAAGCTAC+TGG | + | 24210:20500-20519 | MS.gene40376:CDS | 35.0% | |
| TGACTTTCTCTACCAATTAC+AGG | + | 24210:21937-21956 | MS.gene40376:intron | 35.0% | |
| TTGAAAGCTCAACCACAAAT+GGG | + | 24210:22101-22120 | MS.gene40376:CDS | 35.0% | |
| TTTGTTGGCAGATTGTGATT+TGG | + | 24210:20366-20385 | MS.gene40376:intron | 35.0% | |
| ! | AAGTTCAAGGATTTTCGGAA+GGG | + | 24210:19617-19636 | MS.gene40376:CDS | 35.0% |
| ! | ATCTTCTGCTCTAAGTTCAA+AGG | - | 24210:22272-22291 | MS.gene40376:intergenic | 35.0% |
| ! | ATGCTACTAATTTTGCCTTC+CGG | - | 24210:19255-19274 | MS.gene40376:intergenic | 35.0% |
| ! | GAAGATTTGTTCAGTACAAG+TGG | + | 24210:21533-21552 | MS.gene40376:CDS | 35.0% |
| ! | GAAGTGATATCTTTCTGGAA+TGG | + | 24210:19382-19401 | MS.gene40376:CDS | 35.0% |
| ! | GTTTTTCTATCTACCATCTG+TGG | + | 24210:19455-19474 | MS.gene40376:CDS | 35.0% |
| ! | TCACCAAGTTCAAGGATTTT+CGG | + | 24210:19612-19631 | MS.gene40376:CDS | 35.0% |
| ! | TCCATGGTTCATGATTTTCT+TGG | - | 24210:19341-19360 | MS.gene40376:intergenic | 35.0% |
| ! | TGTTTTCTATCTGCTGAACA+TGG | + | 24210:19563-19582 | MS.gene40376:CDS | 35.0% |
| ! | TTAGTTGATATTGCCACAGA+TGG | - | 24210:19471-19490 | MS.gene40376:intergenic | 35.0% |
| !! | AATCAGTACAAGAGCATTGT+TGG | - | 24210:20432-20451 | MS.gene40376:intergenic | 35.0% |
| !! | AGAAGTACCTCTATTGTTTG+TGG | + | 24210:20968-20987 | MS.gene40376:CDS | 35.0% |
| !! | ATAAAAAGCATCTCGGTAAC+TGG | - | 24210:22067-22086 | MS.gene40376:intergenic | 35.0% |
| !! | GAATCTAGGTGTCACTATAT+TGG | + | 24210:22558-22577 | MS.gene40376:CDS | 35.0% |
| !! | GAGATGCTTTTTATCATCAG+AGG | + | 24210:22073-22092 | MS.gene40376:CDS | 35.0% |
| !! | GGAGAGAACATTATTTTGCA+CGG | - | 24210:20935-20954 | MS.gene40376:intergenic | 35.0% |
| !!! | GTTTTGTTTGCCCACTTAAT+CGG | + | 24210:21243-21262 | MS.gene40376:CDS | 35.0% |
| ACTCATAGCTATCTTAGGTC+TGG | + | 24210:21221-21240 | MS.gene40376:CDS | 40.0% | |
| AGTACCTCTATTGTTTGTGG+TGG | + | 24210:20971-20990 | MS.gene40376:CDS | 40.0% | |
| ATATCTCTACGAAGGTCTGT+AGG | - | 24210:21604-21623 | MS.gene40376:intergenic | 40.0% | |
| ATGTGCTTGTAGTCAAACTC+TGG | - | 24210:21176-21195 | MS.gene40376:intergenic | 40.0% | |
| CCTATACTTGTAGGTCTTAG+GGG | + | 24210:20696-20715 | MS.gene40376:intron | 40.0% | |
| CGGAAGAATGGATGAAACAT+CGG | + | 24210:21479-21498 | MS.gene40376:CDS | 40.0% | |
| CTTCCGAAAATCCTTGAACT+TGG | - | 24210:19618-19637 | MS.gene40376:intergenic | 40.0% | |
| CTTGAAAGCTCAACCACAAA+TGG | + | 24210:22100-22119 | MS.gene40376:CDS | 40.0% | |
| GACTACAAGCACATTTGTGT+GGG | + | 24210:21182-21201 | MS.gene40376:CDS | 40.0% | |
| GATGAAGAAACAATCCTGAG+AGG | + | 24210:21574-21593 | MS.gene40376:CDS | 40.0% | |
| GCGAATACTACTTCTGTGTT+TGG | + | 24210:20856-20875 | MS.gene40376:CDS | 40.0% | |
| GCTTAGAGACAACTTCATAG+TGG | + | 24210:19812-19831 | MS.gene40376:intron | 40.0% | |
| GTACCTCTATTGTTTGTGGT+GGG | + | 24210:20972-20991 | MS.gene40376:CDS | 40.0% | |
| GTATCATCCTTGAGTACTCA+AGG | + | 24210:22016-22035 | MS.gene40376:CDS | 40.0% | |
| GTTTCTACTCTTACCATTGG+AGG | + | 24210:22353-22372 | MS.gene40376:CDS | 40.0% | |
| TACCTCTATTGTTTGTGGTG+GGG | + | 24210:20973-20992 | MS.gene40376:CDS | 40.0% | |
| TATCTCTACGAAGGTCTGTA+GGG | - | 24210:21603-21622 | MS.gene40376:intergenic | 40.0% | |
| TATGCTGTAACTTCTTGCTG+TGG | - | 24210:22327-22346 | MS.gene40376:intergenic | 40.0% | |
| TCAAGAACAAGCTTCCATGT+AGG | + | 24210:21328-21347 | MS.gene40376:intron | 40.0% | |
| TCCAGAAAGATATCACTTCC+TGG | - | 24210:19381-19400 | MS.gene40376:intergenic | 40.0% | |
| TCCAGGAAGTGATATCTTTC+TGG | + | 24210:19377-19396 | MS.gene40376:CDS | 40.0% | |
| TCCGTTTCTACTCTTACCAT+TGG | + | 24210:22350-22369 | MS.gene40376:CDS | 40.0% | |
| TGAAAGCTCAACCACAAATG+GGG | + | 24210:22102-22121 | MS.gene40376:CDS | 40.0% | |
| TGACTACAAGCACATTTGTG+TGG | + | 24210:21181-21200 | MS.gene40376:CDS | 40.0% | |
| TGGTAGAGAAAGTCATGACA+TGG | - | 24210:21932-21951 | MS.gene40376:intergenic | 40.0% | |
| TTAAAGCCTGGTGATTTCTG+CGG | + | 24210:22154-22173 | MS.gene40376:CDS | 40.0% | |
| TTGCTGCAAACACAAGGAAA+GGG | + | 24210:22590-22609 | MS.gene40376:CDS | 40.0% | |
| TTTGCTGCAAACACAAGGAA+AGG | + | 24210:22589-22608 | MS.gene40376:CDS | 40.0% | |
| ! | AGTTCAAGGATTTTCGGAAG+GGG | + | 24210:19618-19637 | MS.gene40376:CDS | 40.0% |
| ! | CAAGTTCAAGGATTTTCGGA+AGG | + | 24210:19616-19635 | MS.gene40376:CDS | 40.0% |
| ! | CAGCTACTTACGACTTGTTT+CGG | + | 24210:21708-21727 | MS.gene40376:intron | 40.0% |
| ! | GGTTCCCTTTTTCTCACAAA+TGG | + | 24210:21958-21977 | MS.gene40376:intron | 40.0% |
| ! | TCTTCAGGCTTTTGCAACTT+GGG | - | 24210:22643-22662 | MS.gene40376:intergenic | 40.0% |
| !! | CAAGATTTGCTGCAAACACA+AGG | + | 24210:22584-22603 | MS.gene40376:CDS | 40.0% |
| !! | CTTGTTTCATTCAGGTTGCT+TGG | + | 24210:22386-22405 | MS.gene40376:CDS | 40.0% |
| !! | GGCAAGTTGAGAGTAGATTT+TGG | - | 24210:22208-22227 | MS.gene40376:intergenic | 40.0% |
| !! | TACTGGTGTTGTCACAAAGA+CGG | + | 24210:20517-20536 | MS.gene40376:CDS | 40.0% |
| ACACGCTCTCTCAGAAATTG+TGG | - | 24210:21511-21530 | MS.gene40376:intergenic | 45.0% | |
| AGGAACATACACGTCGAACA+AGG | - | 24210:21648-21667 | MS.gene40376:intergenic | 45.0% | |
| AGTTCCTGATCTAGTACCTG+GGG | - | 24210:19729-19748 | MS.gene40376:intergenic | 45.0% | |
| ATCTGGGGACATATTGAAGC+AGG | - | 24210:20457-20476 | MS.gene40376:intergenic | 45.0% | |
| CACGCTCTCTCAGAAATTGT+GGG | - | 24210:21510-21529 | MS.gene40376:intergenic | 45.0% | |
| CAGTTCCTGATCTAGTACCT+GGG | - | 24210:19730-19749 | MS.gene40376:intergenic | 45.0% | |
| CCAATGCTCTCTTCTTGAAC+CGG | - | 24210:22414-22433 | MS.gene40376:intergenic | 45.0% | |
| CCCCTAAGACCTACAAGTAT+AGG | - | 24210:20699-20718 | MS.gene40376:intergenic | 45.0% | |
| CCTTTGTGTCACCAAGTTCA+AGG | + | 24210:19604-19623 | MS.gene40376:CDS | 45.0% | |
| CGGAGAAGAGTTACTTGCTT+GGG | + | 24210:22174-22193 | MS.gene40376:CDS | 45.0% | |
| GAAAGCTCAACCACAAATGG+GGG | + | 24210:22103-22122 | MS.gene40376:CDS | 45.0% | |
| GAAAGGGGTTCAGAAGATCA+AGG | + | 24210:22606-22625 | MS.gene40376:CDS | 45.0% | |
| GAACAAGGTCTAAGCAAAGG+TGG | - | 24210:21633-21652 | MS.gene40376:intergenic | 45.0% | |
| GCAGAAATCACCAGGCTTTA+AGG | - | 24210:22155-22174 | MS.gene40376:intergenic | 45.0% | |
| GCAGTGCAGCAAAAAGATCT+AGG | - | 24210:19701-19720 | MS.gene40376:intergenic | 45.0% | |
| GGCACATACATTGTCAGAGA+AGG | + | 24210:22037-22056 | MS.gene40376:CDS | 45.0% | |
| GTATGTGCCTTGAGTACTCA+AGG | - | 24210:22026-22045 | MS.gene40376:intergenic | 45.0% | |
| GTCGAACAAGGTCTAAGCAA+AGG | - | 24210:21636-21655 | MS.gene40376:intergenic | 45.0% | |
| GTGAACTTGTCATGGATCCT+AGG | + | 24210:19640-19659 | MS.gene40376:CDS | 45.0% | |
| TCAGTTCCTGATCTAGTACC+TGG | - | 24210:19731-19750 | MS.gene40376:intergenic | 45.0% | |
| TCATGGGAGCTTCTAATTGC+CGG | - | 24210:20401-20420 | MS.gene40376:intergenic | 45.0% | |
| TGATGCAATATGCGAGCGAT+TGG | + | 24210:21994-22013 | MS.gene40376:CDS | 45.0% | |
| TGCTGCAAACACAAGGAAAG+GGG | + | 24210:22591-22610 | MS.gene40376:CDS | 45.0% | |
| TGTTGTCACAAAGACGGCTT+GGG | + | 24210:20523-20542 | MS.gene40376:CDS | 45.0% | |
| TTACTGTGAGGCTTGAAGAG+TGG | + | 24210:21437-21456 | MS.gene40376:CDS | 45.0% | |
| ! | CCTTGAACTTGGTGACACAA+AGG | - | 24210:19607-19626 | MS.gene40376:intergenic | 45.0% |
| ! | CTCTTCAGGCTTTTGCAACT+TGG | - | 24210:22644-22663 | MS.gene40376:intergenic | 45.0% |
| ! | CTGCATGTTGCCGATTAAGT+GGG | - | 24210:21256-21275 | MS.gene40376:intergenic | 45.0% |
| ! | GGCAAGTAGTCTTAGCTTGA+GGG | + | 24210:22432-22451 | MS.gene40376:CDS | 45.0% |
| ! | TGCATAAAGCTCTAGCCTAG+TGG | - | 24210:20239-20258 | MS.gene40376:intergenic | 45.0% |
| ! | TGCGAGACGGTATTTGAGAT+CGG | + | 24210:19668-19687 | MS.gene40376:CDS | 45.0% |
| ! | TGGCAAGTAGTCTTAGCTTG+AGG | + | 24210:22431-22450 | MS.gene40376:CDS | 45.0% |
| ! | TTGAAAGGCATGCTACTTGC+TGG | + | 24210:20740-20759 | MS.gene40376:CDS | 45.0% |
| !! | ATCCTAGGTTGATTGCGAGA+CGG | + | 24210:19655-19674 | MS.gene40376:CDS | 45.0% |
| ACTCTTACCATTGGAGGACG+TGG | + | 24210:22359-22378 | MS.gene40376:CDS | 50.0% | |
| ACTTCCCCAGGTACTAGATC+AGG | + | 24210:19722-19741 | MS.gene40376:intron | 50.0% | |
| AGCCCCACCACAAACAATAG+AGG | - | 24210:20978-20997 | MS.gene40376:intergenic | 50.0% | |
| CCACTTAATCGGCAACATGC+AGG | + | 24210:21254-21273 | MS.gene40376:CDS | 50.0% | |
| CTCTTACCATTGGAGGACGT+GGG | + | 24210:22360-22379 | MS.gene40376:CDS | 50.0% | |
| GCCTGAAGAGCCAGATTTCT+CGG | + | 24210:22654-22673 | MS.gene40376:CDS | 50.0% | |
| GCGGAGAAGAGTTACTTGCT+TGG | + | 24210:22173-22192 | MS.gene40376:CDS | 50.0% | |
| GTGTTGTCACAAAGACGGCT+TGG | + | 24210:20522-20541 | MS.gene40376:CDS | 50.0% | |
| TACCGTCTCGCAATCAACCT+AGG | - | 24210:19660-19679 | MS.gene40376:intergenic | 50.0% | |
| TCAGGCTCTACCGAGAAATC+TGG | - | 24210:22667-22686 | MS.gene40376:intergenic | 50.0% | |
| TCTTCTCCGCAGAAATCACC+AGG | - | 24210:22163-22182 | MS.gene40376:intergenic | 50.0% | |
| TGATCTAGTACCTGGGGAAG+TGG | - | 24210:19723-19742 | MS.gene40376:intergenic | 50.0% | |
| ! | CCGGTTCAAGAAGAGAGCAT+TGG | + | 24210:22411-22430 | MS.gene40376:CDS | 50.0% |
| ! | CCTGCATGTTGCCGATTAAG+TGG | - | 24210:21257-21276 | MS.gene40376:intergenic | 50.0% |
| ! | GGCGTTGGATATCTCTACGA+AGG | - | 24210:21612-21631 | MS.gene40376:intergenic | 50.0% |
| ! | GTGGGCTGCTTGTTTCATTC+AGG | + | 24210:22378-22397 | MS.gene40376:CDS | 50.0% |
| ! | TACAAGTGGCTTGCAACTCG+AGG | + | 24210:21547-21566 | MS.gene40376:CDS | 50.0% |
| !! | ACCGAGAAATCTGGCTCTTC+AGG | - | 24210:22658-22677 | MS.gene40376:intergenic | 50.0% |
| ACCACAAATGGGGGCAGAAC+TGG | + | 24210:22112-22131 | MS.gene40376:CDS | 55.0% | |
| ACCAGTTCTGCCCCCATTTG+TGG | - | 24210:22116-22135 | MS.gene40376:intergenic | 55.0% | |
| ACGATGGTGATCGCGTGAAG+TGG | + | 24210:20833-20852 | MS.gene40376:CDS | 55.0% | |
| AGCGACGTGACACGGAAGAA+TGG | + | 24210:21467-21486 | MS.gene40376:CDS | 55.0% | |
| CCTAGTGGTCACTCGCATTC+AGG | - | 24210:20224-20243 | MS.gene40376:intergenic | 55.0% | |
| CCTGAATGCGAGTGACCACT+AGG | + | 24210:20221-20240 | MS.gene40376:intron | 55.0% | |
| CGATGGTGATCGCGTGAAGT+GGG | + | 24210:20834-20853 | MS.gene40376:CDS | 55.0% | |
| CGGAAGGGGTGAACTTGTCA+TGG | + | 24210:19632-19651 | MS.gene40376:CDS | 55.0% | |
| CTCTACGAAGGTCTGTAGGG+AGG | - | 24210:21600-21619 | MS.gene40376:intergenic | 55.0% | |
| CTGTGAGGCTTGAAGAGTGG+AGG | + | 24210:21440-21459 | MS.gene40376:CDS | 55.0% | |
| GGTCTAAGCAAAGGTGGCGT+TGG | - | 24210:21627-21646 | MS.gene40376:intergenic | 55.0% | |
| !! | TCATTCAGGTTGCTTGGCGC+CGG | + | 24210:22392-22411 | MS.gene40376:CDS | 55.0% |
| !! | TGTAGGTCTTAGGGGCATCG+TGG | + | 24210:20704-20723 | MS.gene40376:intron | 55.0% |
| AAGCAGCCCACGTCCTCCAA+TGG | - | 24210:22369-22388 | MS.gene40376:intergenic | 60.0% | |
| GAGGCTCAAGCGACGTGACA+CGG | + | 24210:21459-21478 | MS.gene40376:CDS | 60.0% | |
| GGTGGGGCTTGCAGAACTTG+AGG | + | 24210:20989-21008 | MS.gene40376:CDS | 60.0% | |
| ! | GTCACAAAGACGGCTTGGGC+CGG | + | 24210:20527-20546 | MS.gene40376:CDS | 60.0% |
| GGTCTGTAGGGAGGCCTCTC+AGG | - | 24210:21591-21610 | MS.gene40376:intergenic | 65.0% | |
| ! | TGCTGCACTGCCACTTCCCC+AGG | + | 24210:19710-19729 | MS.gene40376:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24210 | gene | 19219 | 22696 | 19219 | ID=MS.gene40376 |
| 24210 | mRNA | 19219 | 22696 | 19219 | ID=MS.gene40376.t1;Parent=MS.gene40376 |
| 24210 | exon | 19219 | 19731 | 19219 | ID=MS.gene40376.t1.exon1;Parent=MS.gene40376.t1 |
| 24210 | CDS | 19219 | 19731 | 19219 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| 24210 | exon | 20377 | 20589 | 20377 | ID=MS.gene40376.t1.exon2;Parent=MS.gene40376.t1 |
| 24210 | CDS | 20377 | 20589 | 20377 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| 24210 | exon | 20709 | 21010 | 20709 | ID=MS.gene40376.t1.exon3;Parent=MS.gene40376.t1 |
| 24210 | CDS | 20709 | 21010 | 20709 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| 24210 | exon | 21164 | 21275 | 21164 | ID=MS.gene40376.t1.exon4;Parent=MS.gene40376.t1 |
| 24210 | CDS | 21164 | 21275 | 21164 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| 24210 | exon | 21421 | 21657 | 21421 | ID=MS.gene40376.t1.exon5;Parent=MS.gene40376.t1 |
| 24210 | CDS | 21421 | 21657 | 21421 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| 24210 | exon | 21959 | 22696 | 21959 | ID=MS.gene40376.t1.exon6;Parent=MS.gene40376.t1 |
| 24210 | CDS | 21959 | 22696 | 21959 | ID=cds.MS.gene40376.t1;Parent=MS.gene40376.t1 |
| Gene Sequence |
| Protein sequence |
