Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40459.t1 | AES90515.1 | 98.3 | 303 | 5 | 0 | 1 | 303 | 17 | 319 | 2.10E-167 | 598.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40459.t1 | Q9LPM9 | 66.1 | 298 | 98 | 2 | 6 | 302 | 18 | 313 | 4.7e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40459.t1 | G7JT01 | 98.3 | 303 | 5 | 0 | 1 | 303 | 17 | 319 | 1.5e-167 | 598.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene40459 | -0.808318 | 3.28E-50 | -1.69E-46 |
| MS.gene053638 | MS.gene40459 | 0.905473 | 4.13E-80 | -1.69E-46 |
| MS.gene058382 | MS.gene40459 | 0.809273 | 2.05E-50 | -1.69E-46 |
| MS.gene061044 | MS.gene40459 | 0.811535 | 6.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCATTGATTTGGGTTATA+AGG | 0.149101 | 4.3:-21688370 | MS.gene40459:intron |
| AATACATACCCAACGTTTAT+TGG | 0.212789 | 4.3:+21689596 | None:intergenic |
| CATAGACATCGCCATTGATT+TGG | 0.259021 | 4.3:-21688379 | MS.gene40459:CDS |
| CATAATTTCCTCCACTGATA+TGG | 0.286519 | 4.3:+21688217 | None:intergenic |
| TGTTGCATCTGTAACATATA+AGG | 0.310394 | 4.3:-21688147 | MS.gene40459:CDS |
| GAAATTATGCTGACATCAAT+TGG | 0.320437 | 4.3:-21690431 | MS.gene40459:CDS |
| GGAAAGGGACGCTTTATCTT+AGG | 0.336223 | 4.3:-21689273 | MS.gene40459:CDS |
| TTGTTCTTGGATTCAGCAAC+TGG | 0.355547 | 4.3:-21688648 | MS.gene40459:CDS |
| ATAGACATCGCCATTGATTT+GGG | 0.368721 | 4.3:-21688378 | MS.gene40459:CDS |
| ACCTCGTGGTACTTTCCAAC+AGG | 0.385531 | 4.3:+21689175 | None:intergenic |
| AGGCCTTTGCTGATGGGAAC+AGG | 0.410408 | 4.3:-21689253 | MS.gene40459:CDS |
| GCTGCTGGTATCATAAACTA+TGG | 0.421561 | 4.3:-21690291 | MS.gene40459:CDS |
| TATTTATAGGGAATCTTTGA+GGG | 0.423848 | 4.3:-21689768 | MS.gene40459:intron |
| TTATTTATAGGGAATCTTTG+AGG | 0.451052 | 4.3:-21689769 | MS.gene40459:intron |
| TTATCTTAGGCCTTTGCTGA+TGG | 0.459569 | 4.3:-21689260 | MS.gene40459:CDS |
| ATAGCTGGCAGTGGTGGAAC+AGG | 0.460699 | 4.3:-21688982 | MS.gene40459:CDS |
| CAATGTTTCCATAGCGAATG+AGG | 0.461717 | 4.3:+21690325 | None:intergenic |
| TCTCCTCTGGTCGGAAAAGA+AGG | 0.461828 | 4.3:+21689712 | None:intergenic |
| TATCTTAGGCCTTTGCTGAT+GGG | 0.462963 | 4.3:-21689259 | MS.gene40459:CDS |
| CATGTCATGAAATGCACAAA+AGG | 0.463428 | 4.3:-21690369 | MS.gene40459:CDS |
| AGAATAGATCCATCTATTGC+CGG | 0.463647 | 4.3:+21688426 | None:intergenic |
| CTCATTTATTGCTCCCCTGT+TGG | 0.463936 | 4.3:-21689190 | MS.gene40459:CDS |
| TTGAAACAGGTACCTCCTCC+AGG | 0.466899 | 4.3:-21689295 | MS.gene40459:intron |
| AAGAAGGATTCGCCCATCTT+CGG | 0.471480 | 4.3:+21689728 | None:intergenic |
| AGTTCTTGCCAATAAACGTT+GGG | 0.472787 | 4.3:-21689604 | MS.gene40459:intron |
| GAATGCTCTACGCATGAAGA+TGG | 0.475110 | 4.3:-21689691 | MS.gene40459:CDS |
| ATCAATGGCGATGTCTATGA+TGG | 0.477143 | 4.3:+21688383 | None:intergenic |
| AGATAAAGCGTCCCTTTCCC+TGG | 0.488127 | 4.3:+21689277 | None:intergenic |
| AAAGCATATAGAACCGAAGA+TGG | 0.494591 | 4.3:-21689741 | MS.gene40459:CDS |
| TGTACTCAGGTGATGGAGCC+GGG | 0.495014 | 4.3:+21689218 | None:intergenic |
| AACAGGAGCTGCATTAGGCC+CGG | 0.496200 | 4.3:-21689236 | MS.gene40459:CDS |
| ATAGATGGATCTATTCTGCC+TGG | 0.500850 | 4.3:-21688420 | MS.gene40459:CDS |
| TACCTTATAACCCAAATCAA+TGG | 0.507754 | 4.3:+21688368 | None:intergenic |
| GTGTACTCAGGTGATGGAGC+CGG | 0.507861 | 4.3:+21689217 | None:intergenic |
| AATGCTCTACGCATGAAGAT+GGG | 0.515215 | 4.3:-21689690 | MS.gene40459:CDS |
| ATGCGTAGAGCATTCTCCTC+TGG | 0.524923 | 4.3:+21689699 | None:intergenic |
| ATGGGAACAGGAGCTGCATT+AGG | 0.526658 | 4.3:-21689241 | MS.gene40459:CDS |
| TAGATGGATCTATTCTGCCT+GGG | 0.527089 | 4.3:-21688419 | MS.gene40459:CDS |
| CGATCAATAGCTGGCAGTGG+TGG | 0.529542 | 4.3:-21688988 | MS.gene40459:CDS |
| AGGTACCTCCTCCAGGGAAA+GGG | 0.530899 | 4.3:-21689288 | MS.gene40459:CDS |
| AAATTATGCTGACATCAATT+GGG | 0.535395 | 4.3:-21690430 | MS.gene40459:CDS |
| ATGACATGCATGTAATCTGT+TGG | 0.538379 | 4.3:+21690384 | None:intergenic |
| CAGGTACCTCCTCCAGGGAA+AGG | 0.544439 | 4.3:-21689289 | MS.gene40459:CDS |
| CAAGGATCCCTCATTCGCTA+TGG | 0.546856 | 4.3:-21690333 | MS.gene40459:CDS |
| AAATTTCATCGATCAATAGC+TGG | 0.549508 | 4.3:-21688997 | MS.gene40459:CDS |
| TAGTTTATGATACCAGCAGC+CGG | 0.554250 | 4.3:+21690294 | None:intergenic |
| CGGAAGACTAAACTTAAAAG+TGG | 0.556487 | 4.3:-21689025 | MS.gene40459:CDS |
| AGCGTCCCTTTCCCTGGAGG+AGG | 0.558749 | 4.3:+21689283 | None:intergenic |
| ATTGAGATAAGCCCGGCTGC+TGG | 0.560098 | 4.3:-21690306 | MS.gene40459:CDS |
| TCAACAAACTGCTCAACTGA+TGG | 0.571107 | 4.3:+21689642 | None:intergenic |
| CTGTAACATATAAGGAAACA+AGG | 0.572784 | 4.3:-21688139 | None:intergenic |
| CAAGACATCAGAAAATCCAT+TGG | 0.572958 | 4.3:+21688668 | None:intergenic |
| TGGTATCATAAACTATGGAC+AGG | 0.579973 | 4.3:-21690286 | MS.gene40459:intron |
| TAAATGAGAAATGTGTACTC+AGG | 0.581598 | 4.3:+21689205 | None:intergenic |
| GTAACTGAAGCAAAAGCCAA+TGG | 0.582493 | 4.3:-21688684 | MS.gene40459:CDS |
| ATGCTCTACGCATGAAGATG+GGG | 0.583009 | 4.3:-21689689 | MS.gene40459:CDS |
| AGTTTATGATACCAGCAGCC+GGG | 0.586157 | 4.3:+21690295 | None:intergenic |
| TGGAAACATTGAGATAAGCC+CGG | 0.589471 | 4.3:-21690313 | MS.gene40459:CDS |
| GCTGGCAGTGGTGGAACAGG+AGG | 0.602903 | 4.3:-21688979 | MS.gene40459:CDS |
| AAGCATATAGAACCGAAGAT+GGG | 0.603146 | 4.3:-21689740 | MS.gene40459:CDS |
| CATCGATCAATAGCTGGCAG+TGG | 0.604641 | 4.3:-21688991 | MS.gene40459:CDS |
| GCTCCTGTTCCCATCAGCAA+AGG | 0.605225 | 4.3:+21689250 | None:intergenic |
| GTGCAATATATTTGTTGTGA+AGG | 0.605535 | 4.3:-21688601 | MS.gene40459:intron |
| CATAGAACGTTCCATATCAG+TGG | 0.605813 | 4.3:-21688228 | MS.gene40459:CDS |
| AGAAATGTGTACTCAGGTGA+TGG | 0.612357 | 4.3:+21689211 | None:intergenic |
| GCTGATGAAGTGTTCTGCAC+AGG | 0.613446 | 4.3:-21688191 | MS.gene40459:CDS |
| TATGCTGACATCAATTGGGA+AGG | 0.614608 | 4.3:-21690426 | MS.gene40459:CDS |
| CAGTTCTTGCCAATAAACGT+TGG | 0.616405 | 4.3:-21689605 | MS.gene40459:CDS |
| AACTGCTCAACTGATGGTGA+TGG | 0.617477 | 4.3:+21689648 | None:intergenic |
| AATGTTTCCATAGCGAATGA+GGG | 0.619575 | 4.3:+21690326 | None:intergenic |
| AAGACTAAACTTAAAAGTGG+AGG | 0.620669 | 4.3:-21689022 | MS.gene40459:CDS |
| GAGTGTTACTAATTATGCCC+CGG | 0.621088 | 4.3:-21688950 | MS.gene40459:intron |
| TGCTCTACGCATGAAGATGG+GGG | 0.622391 | 4.3:-21689688 | MS.gene40459:CDS |
| TGAAACAGGTACCTCCTCCA+GGG | 0.635669 | 4.3:-21689294 | MS.gene40459:intron |
| AGAACGTTCCATATCAGTGG+AGG | 0.645297 | 4.3:-21688225 | MS.gene40459:CDS |
| GTAGAGCATTCTCCTCTGGT+CGG | 0.659032 | 4.3:+21689703 | None:intergenic |
| AGATGGATCTATTCTGCCTG+GGG | 0.660994 | 4.3:-21688418 | MS.gene40459:CDS |
| CCTCGTGGTACTTTCCAACA+GGG | 0.667858 | 4.3:+21689176 | None:intergenic |
| TAAAGCGTCCCTTTCCCTGG+AGG | 0.677703 | 4.3:+21689280 | None:intergenic |
| ATATGTTACAGATGCAACAG+AGG | 0.681902 | 4.3:+21688151 | None:intergenic |
| CTCGTGGTACTTTCCAACAG+GGG | 0.704735 | 4.3:+21689177 | None:intergenic |
| CCCTGTTGGAAAGTACCACG+AGG | 0.738152 | 4.3:-21689176 | MS.gene40459:intron |
| GTTCTGCACAGGAACTGCAG+TGG | 0.751564 | 4.3:-21688180 | MS.gene40459:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATATATAAAGTAAACTT+GGG | - | chr4.3:21688642-21688661 | MS.gene40459:CDS | 15.0% |
| !! | ATATATAATATTCAATTTGG+AGG | + | chr4.3:21689717-21689736 | None:intergenic | 15.0% |
| !! | TACTATATATAAAGTAAACT+TGG | - | chr4.3:21688641-21688660 | MS.gene40459:CDS | 15.0% |
| !! | TATAGATGATTAATGATTTA+TGG | - | chr4.3:21690286-21690305 | MS.gene40459:intron | 15.0% |
| !!! | AAAATGGTTTCTTTATTTAT+AGG | - | chr4.3:21688801-21688820 | MS.gene40459:intron | 15.0% |
| !!! | AAATGGTTTCTTTATTTATA+GGG | - | chr4.3:21688802-21688821 | MS.gene40459:intron | 15.0% |
| !!! | TGAATATTATATATTTTCCT+TGG | - | chr4.3:21689723-21689742 | MS.gene40459:CDS | 15.0% |
| !! | AAAATAAAAATTTAACAGGG+CGG | - | chr4.3:21689537-21689556 | MS.gene40459:intron | 20.0% |
| !! | AGAAAATAATGACAAACATT+GGG | + | chr4.3:21690253-21690272 | None:intergenic | 20.0% |
| !! | CTATATATAAAGTAAACTTG+GGG | - | chr4.3:21688643-21688662 | MS.gene40459:CDS | 20.0% |
| !! | GTTTCATATTAATCTTGTTA+AGG | - | chr4.3:21690116-21690135 | MS.gene40459:intron | 20.0% |
| !! | TAGAAAATAATGACAAACAT+TGG | + | chr4.3:21690254-21690273 | None:intergenic | 20.0% |
| !! | TATAAGTAAATTCAAATCCA+TGG | + | chr4.3:21689436-21689455 | None:intergenic | 20.0% |
| !! | TATATATAAAGTAAACTTGG+GGG | - | chr4.3:21688644-21688663 | MS.gene40459:CDS | 20.0% |
| !! | TTATATTACAGTCACAATTA+CGG | - | chr4.3:21688474-21688493 | MS.gene40459:intron | 20.0% |
| !!! | CTTATATTGTTTTGTTACTA+AGG | - | chr4.3:21689450-21689469 | MS.gene40459:intron | 20.0% |
| ! | AAATTATGCTGACATCAATT+GGG | - | chr4.3:21688152-21688171 | MS.gene40459:CDS | 25.0% |
| ! | CAATTTAATATCATGACTTC+AGG | - | chr4.3:21689208-21689227 | MS.gene40459:CDS | 25.0% |
| ! | GAAGTCATGATATTAAATTG+CGG | + | chr4.3:21689208-21689227 | None:intergenic | 25.0% |
| ! | TATTTATAGGGAATCTTTGA+GGG | - | chr4.3:21688814-21688833 | MS.gene40459:intron | 25.0% |
| ! | TGTCTAAAAATGCACTAAAA+TGG | - | chr4.3:21688785-21688804 | MS.gene40459:intron | 25.0% |
| ! | TTATTTATAGGGAATCTTTG+AGG | - | chr4.3:21688813-21688832 | MS.gene40459:intron | 25.0% |
| ! | TTTGTAACAAAACTATGTTC+AGG | - | chr4.3:21690330-21690349 | MS.gene40459:CDS | 25.0% |
| !! | AATGATGCATATTGTTACTT+AGG | - | chr4.3:21689795-21689814 | MS.gene40459:intron | 25.0% |
| !! | AATTTAAAACCATCGTACAA+GGG | + | chr4.3:21688354-21688373 | None:intergenic | 25.0% |
| !! | CTGTAATATAACGAATTTTG+AGG | + | chr4.3:21688465-21688484 | None:intergenic | 25.0% |
| !!! | ACTAACTTTCATGTTTTAAC+AGG | + | chr4.3:21688560-21688579 | None:intergenic | 25.0% |
| !!! | TTAGTGCATTTTTAGACATT+TGG | + | chr4.3:21688783-21688802 | None:intergenic | 25.0% |
| AAATAATGACAAACATTGGG+AGG | + | chr4.3:21690250-21690269 | None:intergenic | 30.0% | |
| AAATTTCATCGATCAATAGC+TGG | - | chr4.3:21689585-21689604 | MS.gene40459:intron | 30.0% | |
| AACTGGAAAAAATATTGAGG+AGG | - | chr4.3:21689951-21689970 | MS.gene40459:intron | 30.0% | |
| AAGACTAAACTTAAAAGTGG+AGG | - | chr4.3:21689560-21689579 | MS.gene40459:intron | 30.0% | |
| AATAATGACAAACATTGGGA+GGG | + | chr4.3:21690249-21690268 | None:intergenic | 30.0% | |
| AATACATACCCAACGTTTAT+TGG | + | chr4.3:21688989-21689008 | None:intergenic | 30.0% | |
| ACTATATCCGAAGCAAAAAT+TGG | - | chr4.3:21690081-21690100 | MS.gene40459:intron | 30.0% | |
| AGCAACTGGAAAAAATATTG+AGG | - | chr4.3:21689948-21689967 | MS.gene40459:intron | 30.0% | |
| CTTAAGTGTAAAGTAGTACA+AGG | + | chr4.3:21688525-21688544 | None:intergenic | 30.0% | |
| GAAATTATGCTGACATCAAT+TGG | - | chr4.3:21688151-21688170 | MS.gene40459:CDS | 30.0% | |
| GCTTCGGATATAGTAAAATA+TGG | + | chr4.3:21690075-21690094 | None:intergenic | 30.0% | |
| TAAATGAGAAATGTGTACTC+AGG | + | chr4.3:21689380-21689399 | None:intergenic | 30.0% | |
| TACCTTATAACCCAAATCAA+TGG | + | chr4.3:21690217-21690236 | None:intergenic | 30.0% | |
| TGAGCTTTCAAAATTGAAAC+AGG | - | chr4.3:21689274-21689293 | MS.gene40459:CDS | 30.0% | |
| TGTTGCATCTGTAACATATA+AGG | - | chr4.3:21690435-21690454 | MS.gene40459:CDS | 30.0% | |
| ! | AAAGGAGAAAAGTTTTCACA+AGG | - | chr4.3:21688231-21688250 | MS.gene40459:CDS | 30.0% |
| ! | CAATTTAAAACCATCGTACA+AGG | + | chr4.3:21688355-21688374 | None:intergenic | 30.0% |
| ! | CATTAGACCAATTTTTGCTT+CGG | + | chr4.3:21690091-21690110 | None:intergenic | 30.0% |
| ! | GGAAAATGATATTTTCACTC+CGG | - | chr4.3:21690137-21690156 | MS.gene40459:intron | 30.0% |
| !! | ATTTTCTGATGTCTTGTTCT+TGG | - | chr4.3:21689921-21689940 | MS.gene40459:intron | 30.0% |
| !! | GTGCAATATATTTGTTGTGA+AGG | - | chr4.3:21689981-21690000 | MS.gene40459:intron | 30.0% |
| !! | GTTACACTGGTTTATATTGT+TGG | - | chr4.3:21688389-21688408 | MS.gene40459:CDS | 30.0% |
| !!! | ATGGTTTTAAATTGAGGTTG+CGG | - | chr4.3:21688361-21688380 | MS.gene40459:intron | 30.0% |
| !!! | TGTACGATGGTTTTAAATTG+AGG | - | chr4.3:21688355-21688374 | MS.gene40459:intron | 30.0% |
| AAAGCATATAGAACCGAAGA+TGG | - | chr4.3:21688841-21688860 | MS.gene40459:intron | 35.0% | |
| AAGCATATAGAACCGAAGAT+GGG | - | chr4.3:21688842-21688861 | MS.gene40459:intron | 35.0% | |
| AATGTTTCCATAGCGAATGA+GGG | + | chr4.3:21688259-21688278 | None:intergenic | 35.0% | |
| AGAATAGATCCATCTATTGC+CGG | + | chr4.3:21690159-21690178 | None:intergenic | 35.0% | |
| AGTTCTTGCCAATAAACGTT+GGG | - | chr4.3:21688978-21688997 | MS.gene40459:CDS | 35.0% | |
| ATATGTTACAGATGCAACAG+AGG | + | chr4.3:21690434-21690453 | None:intergenic | 35.0% | |
| ATCGCCAAAAACTTATGTTG+TGG | - | chr4.3:21689163-21689182 | MS.gene40459:intron | 35.0% | |
| ATGACATGCATGTAATCTGT+TGG | + | chr4.3:21688201-21688220 | None:intergenic | 35.0% | |
| ATTACAGTCACAATTACGGT+TGG | - | chr4.3:21688478-21688497 | MS.gene40459:intron | 35.0% | |
| CAAGACATCAGAAAATCCAT+TGG | + | chr4.3:21689917-21689936 | None:intergenic | 35.0% | |
| CATAATTTCCTCCACTGATA+TGG | + | chr4.3:21690368-21690387 | None:intergenic | 35.0% | |
| CATGTCATGAAATGCACAAA+AGG | - | chr4.3:21688213-21688232 | MS.gene40459:CDS | 35.0% | |
| CATTGCGATATTTCATATCG+TGG | - | chr4.3:21689086-21689105 | MS.gene40459:intron | 35.0% | |
| CGGAAGACTAAACTTAAAAG+TGG | - | chr4.3:21689557-21689576 | MS.gene40459:intron | 35.0% | |
| GAGGAAAAAACACCATCAAA+CGG | + | chr4.3:21689698-21689717 | None:intergenic | 35.0% | |
| TCATATACATCACCGTTTGA+TGG | - | chr4.3:21689683-21689702 | MS.gene40459:CDS | 35.0% | |
| TGGTATCATAAACTATGGAC+AGG | - | chr4.3:21688296-21688315 | MS.gene40459:intron | 35.0% | |
| TTGAGAAGAAATCACATCGA+AGG | - | chr4.3:21689772-21689791 | MS.gene40459:intron | 35.0% | |
| TTTCCTCTTATCTCTCTTTG+TGG | - | chr4.3:21689007-21689026 | MS.gene40459:CDS | 35.0% | |
| ! | TGTGACTTGTGAAAAGTTGT+GGG | - | chr4.3:21689747-21689766 | MS.gene40459:CDS | 35.0% |
| ! | TTGTGACTTGTGAAAAGTTG+TGG | - | chr4.3:21689746-21689765 | MS.gene40459:CDS | 35.0% |
| !! | ATAGACATCGCCATTGATTT+GGG | - | chr4.3:21690204-21690223 | MS.gene40459:intron | 35.0% |
| AATGCTCTACGCATGAAGAT+GGG | - | chr4.3:21688892-21688911 | MS.gene40459:intron | 40.0% | |
| AGAAATGTGTACTCAGGTGA+TGG | + | chr4.3:21689374-21689393 | None:intergenic | 40.0% | |
| AGACCACAAAGAGAGATAAG+AGG | + | chr4.3:21689013-21689032 | None:intergenic | 40.0% | |
| AGTCTAATCAGCTTCATGCA+TGG | - | chr4.3:21689037-21689056 | MS.gene40459:intron | 40.0% | |
| ATAGATGGATCTATTCTGCC+TGG | - | chr4.3:21690162-21690181 | MS.gene40459:intron | 40.0% | |
| ATCAATGGCGATGTCTATGA+TGG | + | chr4.3:21690202-21690221 | None:intergenic | 40.0% | |
| ATCACTATTGCCATGCATAC+CGG | + | chr4.3:21689654-21689673 | None:intergenic | 40.0% | |
| CAATGTTTCCATAGCGAATG+AGG | + | chr4.3:21688260-21688279 | None:intergenic | 40.0% | |
| CAGTTCTTGCCAATAAACGT+TGG | - | chr4.3:21688977-21688996 | MS.gene40459:CDS | 40.0% | |
| CATAGAACGTTCCATATCAG+TGG | - | chr4.3:21690354-21690373 | MS.gene40459:CDS | 40.0% | |
| GACAGATGCAGCTTCAATTT+CGG | - | chr4.3:21689118-21689137 | MS.gene40459:intron | 40.0% | |
| GCTGCTGGTATCATAAACTA+TGG | - | chr4.3:21688291-21688310 | MS.gene40459:intron | 40.0% | |
| GTAACTGAAGCAAAAGCCAA+TGG | - | chr4.3:21689898-21689917 | MS.gene40459:intron | 40.0% | |
| GTTGAAATACCCTTGTACGA+TGG | - | chr4.3:21688342-21688361 | MS.gene40459:intron | 40.0% | |
| TAGATGGATCTATTCTGCCT+GGG | - | chr4.3:21690163-21690182 | MS.gene40459:intron | 40.0% | |
| TAGTTTATGATACCAGCAGC+CGG | + | chr4.3:21688291-21688310 | None:intergenic | 40.0% | |
| TATCTTAGGCCTTTGCTGAT+GGG | - | chr4.3:21689323-21689342 | MS.gene40459:intron | 40.0% | |
| TATGCTGACATCAATTGGGA+AGG | - | chr4.3:21688156-21688175 | MS.gene40459:CDS | 40.0% | |
| TCAACAAACTGCTCAACTGA+TGG | + | chr4.3:21688943-21688962 | None:intergenic | 40.0% | |
| TGGAAACATTGAGATAAGCC+CGG | - | chr4.3:21688269-21688288 | MS.gene40459:intron | 40.0% | |
| TTATCTTAGGCCTTTGCTGA+TGG | - | chr4.3:21689322-21689341 | MS.gene40459:intron | 40.0% | |
| TTGTTCTTGGATTCAGCAAC+TGG | - | chr4.3:21689934-21689953 | MS.gene40459:intron | 40.0% | |
| ! | AGGGCCACAACATAAGTTTT+TGG | + | chr4.3:21689170-21689189 | None:intergenic | 40.0% |
| ! | ATTTTCACTCCGGCAATAGA+TGG | - | chr4.3:21690147-21690166 | MS.gene40459:intron | 40.0% |
| ! | CATAGACATCGCCATTGATT+TGG | - | chr4.3:21690203-21690222 | MS.gene40459:intron | 40.0% |
| ! | CTTTTCACAAGTCACAACCA+AGG | + | chr4.3:21689743-21689762 | None:intergenic | 40.0% |
| ! | GAGTGTTACTAATTATGCCC+CGG | - | chr4.3:21689632-21689651 | MS.gene40459:CDS | 40.0% |
| !! | CGCCATTGATTTGGGTTATA+AGG | - | chr4.3:21690212-21690231 | MS.gene40459:intron | 40.0% |
| !! | TCATGCATGGTTTTACGTTG+CGG | - | chr4.3:21689050-21689069 | MS.gene40459:intron | 40.0% |
| !!! | AGTTTTTGGCGATCTCCAAA+AGG | + | chr4.3:21689156-21689175 | None:intergenic | 40.0% |
| AAGAAGGATTCGCCCATCTT+CGG | + | chr4.3:21688857-21688876 | None:intergenic | 45.0% | |
| AGAACGTTCCATATCAGTGG+AGG | - | chr4.3:21690357-21690376 | MS.gene40459:CDS | 45.0% | |
| AGATGGATCTATTCTGCCTG+GGG | - | chr4.3:21690164-21690183 | MS.gene40459:intron | 45.0% | |
| AGTAAACTTGGGGGATACCA+TGG | - | chr4.3:21688653-21688672 | MS.gene40459:CDS | 45.0% | |
| AGTTTATGATACCAGCAGCC+GGG | + | chr4.3:21688290-21688309 | None:intergenic | 45.0% | |
| ATGCTCTACGCATGAAGATG+GGG | - | chr4.3:21688893-21688912 | MS.gene40459:intron | 45.0% | |
| CAAACACACCCTATATCCAG+TGG | + | chr4.3:21688705-21688724 | None:intergenic | 45.0% | |
| CAAGTTCTCAGTTGTTGCAG+TGG | + | chr4.3:21688603-21688622 | None:intergenic | 45.0% | |
| CTCATTTATTGCTCCCCTGT+TGG | - | chr4.3:21689392-21689411 | MS.gene40459:intron | 45.0% | |
| GAATGCTCTACGCATGAAGA+TGG | - | chr4.3:21688891-21688910 | MS.gene40459:intron | 45.0% | |
| GACTGATGCAGTCAAAACTG+CGG | - | chr4.3:21688419-21688438 | MS.gene40459:CDS | 45.0% | |
| GGAAAGGGACGCTTTATCTT+AGG | - | chr4.3:21689309-21689328 | MS.gene40459:intron | 45.0% | |
| GGTTGCGGTTATTGTTACAC+TGG | - | chr4.3:21688376-21688395 | MS.gene40459:CDS | 45.0% | |
| TAATTATGCCCCGGTATGCA+TGG | - | chr4.3:21689641-21689660 | MS.gene40459:CDS | 45.0% | |
| TAGATCCGCCACTGGATATA+GGG | - | chr4.3:21688694-21688713 | MS.gene40459:CDS | 45.0% | |
| TCACTATTGCCATGCATACC+GGG | + | chr4.3:21689653-21689672 | None:intergenic | 45.0% | |
| TTATGTTGTGGCCCTAACAG+TGG | - | chr4.3:21689175-21689194 | MS.gene40459:intron | 45.0% | |
| ! | AACTGCTCAACTGATGGTGA+TGG | + | chr4.3:21688937-21688956 | None:intergenic | 45.0% |
| ! | AATCCTTCTTTTCCGACCAG+AGG | - | chr4.3:21688867-21688886 | MS.gene40459:intron | 45.0% |
| ! | CGGTTGCGATTTTCACCTTT+TGG | - | chr4.3:21689138-21689157 | MS.gene40459:intron | 45.0% |
| !! | AAAAAAAATAAAAATTTAAC+AGG | - | chr4.3:21689533-21689552 | MS.gene40459:intron | 5.0% |
| !! | AAAAAAATAAAAATTTAACA+GGG | - | chr4.3:21689534-21689553 | MS.gene40459:intron | 5.0% |
| !! | AAAATATATAATATTCAATT+TGG | + | chr4.3:21689720-21689739 | None:intergenic | 5.0% |
| !!! | TTTTTTAAAATTAAAAAAGA+AGG | + | chr4.3:21689519-21689538 | None:intergenic | 5.0% |
| ACACACCCTATATCCAGTGG+CGG | + | chr4.3:21688702-21688721 | None:intergenic | 50.0% | |
| ACCTCGTGGTACTTTCCAAC+AGG | + | chr4.3:21689410-21689429 | None:intergenic | 50.0% | |
| ATGGGAACAGGAGCTGCATT+AGG | - | chr4.3:21689341-21689360 | MS.gene40459:intron | 50.0% | |
| CAAGGATCCCTCATTCGCTA+TGG | - | chr4.3:21688249-21688268 | MS.gene40459:intron | 50.0% | |
| CACTATTGCCATGCATACCG+GGG | + | chr4.3:21689652-21689671 | None:intergenic | 50.0% | |
| CATCGATCAATAGCTGGCAG+TGG | - | chr4.3:21689591-21689610 | MS.gene40459:intron | 50.0% | |
| CCTCGTGGTACTTTCCAACA+GGG | + | chr4.3:21689409-21689428 | None:intergenic | 50.0% | |
| CTCGTGGTACTTTCCAACAG+GGG | + | chr4.3:21689408-21689427 | None:intergenic | 50.0% | |
| GCGGTTCAGAACCACTGTTA+GGG | + | chr4.3:21689189-21689208 | None:intergenic | 50.0% | |
| GTAGATCCGCCACTGGATAT+AGG | - | chr4.3:21688693-21688712 | MS.gene40459:CDS | 50.0% | |
| TCTCCTCTGGTCGGAAAAGA+AGG | + | chr4.3:21688873-21688892 | None:intergenic | 50.0% | |
| TGAAACAGGTACCTCCTCCA+GGG | - | chr4.3:21689288-21689307 | MS.gene40459:CDS | 50.0% | |
| TGCGGTTCAGAACCACTGTT+AGG | + | chr4.3:21689190-21689209 | None:intergenic | 50.0% | |
| TGCTCTACGCATGAAGATGG+GGG | - | chr4.3:21688894-21688913 | MS.gene40459:intron | 50.0% | |
| TTGAAACAGGTACCTCCTCC+AGG | - | chr4.3:21689287-21689306 | MS.gene40459:CDS | 50.0% | |
| ! | AGATAAAGCGTCCCTTTCCC+TGG | + | chr4.3:21689308-21689327 | None:intergenic | 50.0% |
| ! | ATGCGTAGAGCATTCTCCTC+TGG | + | chr4.3:21688886-21688905 | None:intergenic | 50.0% |
| ! | ATGGATTTTCGTGTGACCCC+AGG | + | chr4.3:21690183-21690202 | None:intergenic | 50.0% |
| ! | GCTGATGAAGTGTTCTGCAC+AGG | - | chr4.3:21690391-21690410 | MS.gene40459:CDS | 50.0% |
| ! | GTAGAGCATTCTCCTCTGGT+CGG | + | chr4.3:21688882-21688901 | None:intergenic | 50.0% |
| !! | ATCCAGTGGCGGATCTACTT+GGG | + | chr4.3:21688691-21688710 | None:intergenic | 50.0% |
| !! | TATCCAGTGGCGGATCTACT+TGG | + | chr4.3:21688692-21688711 | None:intergenic | 50.0% |
| AACAGGAGCTGCATTAGGCC+CGG | - | chr4.3:21689346-21689365 | MS.gene40459:intron | 55.0% | |
| AAGTACCACGAGGTCAGCCA+TGG | - | chr4.3:21689416-21689435 | MS.gene40459:intron | 55.0% | |
| AGGCCTTTGCTGATGGGAAC+AGG | - | chr4.3:21689329-21689348 | MS.gene40459:intron | 55.0% | |
| AGGTACCTCCTCCAGGGAAA+GGG | - | chr4.3:21689294-21689313 | MS.gene40459:intron | 55.0% | |
| ATTGAGATAAGCCCGGCTGC+TGG | - | chr4.3:21688276-21688295 | MS.gene40459:intron | 55.0% | |
| CAAATCCATGGCTGACCTCG+TGG | + | chr4.3:21689424-21689443 | None:intergenic | 55.0% | |
| CGATCAATAGCTGGCAGTGG+TGG | - | chr4.3:21689594-21689613 | MS.gene40459:intron | 55.0% | |
| GCATGAAGATGGGGGCTGAT+AGG | - | chr4.3:21688902-21688921 | MS.gene40459:intron | 55.0% | |
| GCTCCTGTTCCCATCAGCAA+AGG | + | chr4.3:21689335-21689354 | None:intergenic | 55.0% | |
| GGATCTACTTGGGGACCCAT+GGG | + | chr4.3:21688681-21688700 | None:intergenic | 55.0% | |
| GTTCTGCACAGGAACTGCAG+TGG | - | chr4.3:21690402-21690421 | MS.gene40459:CDS | 55.0% | |
| ! | ATAGCTGGCAGTGGTGGAAC+AGG | - | chr4.3:21689600-21689619 | MS.gene40459:intron | 55.0% |
| ! | TAAAGCGTCCCTTTCCCTGG+AGG | + | chr4.3:21689305-21689324 | None:intergenic | 55.0% |
| !! | CCCTGTTGGAAAGTACCACG+AGG | - | chr4.3:21689406-21689425 | MS.gene40459:intron | 55.0% |
| !! | GTGTACTCAGGTGATGGAGC+CGG | + | chr4.3:21689368-21689387 | None:intergenic | 55.0% |
| !! | TCCAGTGGCGGATCTACTTG+GGG | + | chr4.3:21688690-21688709 | None:intergenic | 55.0% |
| !! | TGTACTCAGGTGATGGAGCC+GGG | + | chr4.3:21689367-21689386 | None:intergenic | 55.0% |
| CAGGTACCTCCTCCAGGGAA+AGG | - | chr4.3:21689293-21689312 | MS.gene40459:intron | 60.0% | |
| CGGATCTACTTGGGGACCCA+TGG | + | chr4.3:21688682-21688701 | None:intergenic | 60.0% | |
| GGGGATACCATGGCTCCCAT+GGG | - | chr4.3:21688663-21688682 | MS.gene40459:CDS | 60.0% | |
| TCCCCAAGTAGATCCGCCAC+TGG | - | chr4.3:21688686-21688705 | MS.gene40459:CDS | 60.0% | |
| AGCGTCCCTTTCCCTGGAGG+AGG | + | chr4.3:21689302-21689321 | None:intergenic | 65.0% | |
| GGGGGATACCATGGCTCCCA+TGG | - | chr4.3:21688662-21688681 | MS.gene40459:CDS | 65.0% | |
| TTGGGGACCCATGGGAGCCA+TGG | + | chr4.3:21688673-21688692 | None:intergenic | 65.0% | |
| ! | GCTGGCAGTGGTGGAACAGG+AGG | - | chr4.3:21689603-21689622 | MS.gene40459:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 21688140 | 21690464 | 21688140 | ID=MS.gene40459 |
| chr4.3 | mRNA | 21688140 | 21690464 | 21688140 | ID=MS.gene40459.t1;Parent=MS.gene40459 |
| chr4.3 | exon | 21690287 | 21690464 | 21690287 | ID=MS.gene40459.t1.exon1;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21690287 | 21690464 | 21690287 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21689605 | 21689781 | 21689605 | ID=MS.gene40459.t1.exon2;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21689605 | 21689781 | 21689605 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21689177 | 21689308 | 21689177 | ID=MS.gene40459.t1.exon3;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21689177 | 21689308 | 21689177 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21688951 | 21689049 | 21688951 | ID=MS.gene40459.t1.exon4;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21688951 | 21689049 | 21688951 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21688602 | 21688718 | 21688602 | ID=MS.gene40459.t1.exon5;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21688602 | 21688718 | 21688602 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21688371 | 21688466 | 21688371 | ID=MS.gene40459.t1.exon6;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21688371 | 21688466 | 21688371 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| chr4.3 | exon | 21688140 | 21688252 | 21688140 | ID=MS.gene40459.t1.exon7;Parent=MS.gene40459.t1 |
| chr4.3 | CDS | 21688140 | 21688252 | 21688140 | ID=cds.MS.gene40459.t1;Parent=MS.gene40459.t1 |
| Gene Sequence |
| Protein sequence |
