AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40523

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40523.t1 MTR_5g005050 95.801 381 10 2 1 376 1 380 0.0 749
MS.gene40523.t1 MTR_5g005050 86.877 381 9 3 1 376 1 345 0.0 662
MS.gene40523.t1 MTR_5g079860 40.357 280 151 6 82 357 117 384 4.98e-55 187
MS.gene40523.t1 MTR_8g064490 34.078 358 193 11 11 353 92 421 2.41e-48 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40523.t1 AT3G19630 71.353 377 102 4 1 376 1 372 0.0 541
MS.gene40523.t1 AT2G39670 42.149 242 133 6 116 353 163 401 1.59e-51 177
MS.gene40523.t1 AT2G39670 42.149 242 133 6 116 353 166 404 1.91e-51 177
MS.gene40523.t1 AT1G60230 35.159 347 186 11 20 353 113 433 5.67e-50 174

Find 80 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAGATGCTTCCATATAAT+TGG 0.210141 5.2:-439817 None:intergenic
TTCTCAGGTTGGATGCAAAA+TGG 0.233494 5.2:+440113 MS.gene40523:CDS
CAAAGTTCATTCCAATTATA+TGG 0.237394 5.2:+439806 MS.gene40523:CDS
ATTCTGTGCAACTGGAAGTA+TGG 0.286571 5.2:+440143 MS.gene40523:CDS
TTGATACCTTTCAACTCTAT+TGG 0.301051 5.2:+441643 MS.gene40523:CDS
CACGGGCAGCAGGCATTATC+TGG 0.316832 5.2:-441206 None:intergenic
TGCTGCCCGTGCTTTCCCTT+TGG 0.319573 5.2:+441218 MS.gene40523:CDS
TTCAAGCTTGATCACAAGTT+TGG 0.320954 5.2:-439986 None:intergenic
GACTGTTGTTCGAATATTAT+AGG 0.343108 5.2:-441734 None:intergenic
TACTTTATGTATTTCTTCTC+AGG 0.346947 5.2:+440098 MS.gene40523:CDS
CATATAATTGGAATGAACTT+TGG 0.355589 5.2:-439805 None:intergenic
TATCCGTAATGTTGTCTTCA+TGG 0.357605 5.2:+440233 MS.gene40523:CDS
GAAGAAACAATAATTCTGAT+TGG 0.377330 5.2:+439842 MS.gene40523:CDS
GAATCTGTGCGCATCATGAC+TGG 0.379358 5.2:+440374 MS.gene40523:CDS
TGTCCTCACCCATCTGCTTC+CGG 0.386591 5.2:-441756 None:intergenic
TATGAGATATGATACTCGTT+TGG 0.402274 5.2:+440035 MS.gene40523:CDS
ATTGAATACATAATGCTTGA+TGG 0.402824 5.2:+441388 MS.gene40523:CDS
ATGAGATATGATACTCGTTT+GGG 0.407618 5.2:+440036 MS.gene40523:CDS
GGTTGTAAATTCTGTGCAAC+TGG 0.417325 5.2:+440135 MS.gene40523:CDS
AAGATCTTCTATATCCGTTA+GGG 0.419980 5.2:-441842 None:intergenic
TTATCTGGCAACGGATGTCT+TGG 0.422082 5.2:-441191 None:intergenic
CAAGATCTTCTATATCCGTT+AGG 0.423990 5.2:-441843 None:intergenic
TCTCAGGTTGGATGCAAAAT+GGG 0.425113 5.2:+440114 MS.gene40523:CDS
CATTTCAGTTGTCATTGAAA+AGG 0.427528 5.2:+440402 MS.gene40523:CDS
AAGAAACAATAATTCTGATT+GGG 0.429002 5.2:+439843 MS.gene40523:CDS
TTATGTATTTCTTCTCAGGT+TGG 0.448424 5.2:+440102 MS.gene40523:CDS
AAAGGGAAAGCACGGGCAGC+AGG 0.451798 5.2:-441216 None:intergenic
GAGCAGCATGCCCACCTACT+AGG 0.453566 5.2:+441424 MS.gene40523:CDS
ACAATAATTCTGATTGGGAA+TGG 0.456253 5.2:+439848 MS.gene40523:CDS
TCTCCAGCAGCTTTCCTAGT+AGG 0.463335 5.2:-441438 None:intergenic
CAATAATTCTGATTGGGAAT+GGG 0.463962 5.2:+439849 MS.gene40523:CDS
TGCAAGAATATCAAAGGAAA+AGG 0.469220 5.2:+441259 MS.gene40523:CDS
TTCTGTGCAACTGGAAGTAT+GGG 0.477827 5.2:+440144 MS.gene40523:CDS
GATACTCGTTTGGGTAAATA+CGG 0.499611 5.2:+440045 MS.gene40523:CDS
CCAGCAGCTTTCCTAGTAGG+TGG 0.502107 5.2:-441435 None:intergenic
TATCTGGCAACGGATGTCTT+GGG 0.508433 5.2:-441190 None:intergenic
ATGAAGAGAAGAAGAGAGAG+GGG 0.513472 5.2:-439932 None:intergenic
AAGTGGTGCGTGCGGACAAT+TGG 0.513561 5.2:+441780 MS.gene40523:CDS
TTTAAAAGTAACTTATCCTC+TGG 0.519468 5.2:+440168 MS.gene40523:CDS
TTACCATGAAGACAACATTA+CGG 0.521555 5.2:-440236 None:intergenic
CTTGTGATCAAGCTTGAAAA+CGG 0.521991 5.2:+439991 MS.gene40523:CDS
TGACGTGCCTGGTTTGAACT+TGG 0.522727 5.2:+441146 MS.gene40523:CDS
GCATTTCCGAGAGACTTGTC+AGG 0.526946 5.2:-441814 None:intergenic
AATGAAGAGAAGAAGAGAGA+GGG 0.528611 5.2:-439933 None:intergenic
AAGCTTCATAATGACGTGCC+TGG 0.529075 5.2:+441135 MS.gene40523:CDS
TAAGCTGAAGAAGGCAGAGA+AGG 0.540953 5.2:-439883 None:intergenic
TACGGTGGTCAACCTCGTCC+TGG 0.541461 5.2:+440063 MS.gene40523:CDS
TGGTGCGTGCGGACAATTGG+TGG 0.546775 5.2:+441783 MS.gene40523:CDS
TGGCAACGGATGTCTTGGGC+TGG 0.557842 5.2:-441186 None:intergenic
CAGCAGCTTTCCTAGTAGGT+GGG 0.560215 5.2:-441434 None:intergenic
CTTCACTGCAAGAATATCAA+AGG 0.561777 5.2:+441253 MS.gene40523:CDS
AACAACAGTCCGGAAGCAGA+TGG 0.563846 5.2:+441747 MS.gene40523:CDS
AACTTACCTGACAAGTCTCT+CGG 0.568451 5.2:+441808 MS.gene40523:CDS
AGTCCGGAAGCAGATGGGTG+AGG 0.575221 5.2:+441753 MS.gene40523:CDS
TGGTGAAATTGTCGAGCAGT+TGG 0.575340 5.2:+440188 MS.gene40523:CDS
GAATGAAGAGAAGAAGAGAG+AGG 0.577552 5.2:-439934 None:intergenic
AATGTACCAATAGAGTTGAA+AGG 0.587561 5.2:-441649 None:intergenic
ATAATATTCGAACAACAGTC+CGG 0.589378 5.2:+441737 MS.gene40523:CDS
AGGAATGAATAAGCTGAAGA+AGG 0.591039 5.2:-439892 None:intergenic
CCACCTACTAGGAAAGCTGC+TGG 0.593678 5.2:+441435 MS.gene40523:CDS
CAGCAGGCATTATCTGGCAA+CGG 0.603912 5.2:-441200 None:intergenic
AAAGTAGCTCTCAGACCACC+AGG 0.606040 5.2:-440081 None:intergenic
ACAACAGTCCGGAAGCAGAT+GGG 0.608173 5.2:+441748 MS.gene40523:CDS
GATCTTCTATATCCGTTAGG+GGG 0.613539 5.2:-441840 None:intergenic
ACAGCAGAATAGTTGTTCAA+AGG 0.614724 5.2:-440347 None:intergenic
AATCTGTGCGCATCATGACT+GGG 0.616777 5.2:+440375 MS.gene40523:CDS
AAGTGACGTTATCAGAAGAG+TGG 0.616950 5.2:-439963 None:intergenic
GCTCTCAGACCACCAGGACG+AGG 0.621474 5.2:-440075 None:intergenic
GAGACTGCCAAGTTCAAACC+AGG 0.629568 5.2:-441153 None:intergenic
TTTGAACAACTATTCTGCTG+TGG 0.630303 5.2:+440349 MS.gene40523:CDS
AGATCTTCTATATCCGTTAG+GGG 0.635379 5.2:-441841 None:intergenic
AAAATCCGATCGGTATTCGA+CGG 0.647476 5.2:+439742 MS.gene40523:CDS
GCTGCTGGAGACATTTGAAG+TGG 0.655494 5.2:+441450 MS.gene40523:CDS
CGACGCCGTCGAATACCGAT+CGG 0.667352 5.2:-439747 None:intergenic
CAGATGGGTGAGGACATAAG+TGG 0.670930 5.2:+441763 MS.gene40523:CDS
GAGGACATAAGTGGTGCGTG+CGG 0.673751 5.2:+441772 MS.gene40523:CDS
GGTGGTCAACCTCGTCCTGG+TGG 0.679750 5.2:+440066 MS.gene40523:CDS
AGTAAGAATGAAAATCCGAT+CGG 0.681003 5.2:+439732 None:intergenic
CTGCTCGACAATTTCACCAG+AGG 0.696718 5.2:-440184 None:intergenic
ACTCGTTTGGGTAAATACGG+TGG 0.734631 5.2:+440048 MS.gene40523:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTCAGAAAATTTTAA+GGG + chr5.2:441708-441727 MS.gene40523:CDS 10.0%
!! TTAATAAAGAAGATATGATT+TGG - chr5.2:440550-440569 None:intergenic 15.0%
!!! AAATTTCAGAAAATTTTAAG+GGG + chr5.2:441709-441728 MS.gene40523:CDS 15.0%
!!! CTAAATTTCAGAAAATTTTA+AGG + chr5.2:441707-441726 MS.gene40523:CDS 15.0%
!!! TTGTTTTTATTCCATTAATT+GGG + chr5.2:440470-440489 MS.gene40523:intron 15.0%
!!! TTTGTTTTTATTCCATTAAT+TGG + chr5.2:440469-440488 MS.gene40523:intron 15.0%
!! AAGAAACAATAATTCTGATT+GGG + chr5.2:439843-439862 MS.gene40523:CDS 20.0%
!!! ACATTTTAAAGTTTTTCAAG+TGG + chr5.2:440697-440716 MS.gene40523:intron 20.0%
!!! AGATAAGTTAATTTTGTGTT+TGG - chr5.2:440867-440886 None:intergenic 20.0%
!!! TTTTTTTTATTACAGGGAAT+GGG + chr5.2:440320-440339 MS.gene40523:intron 20.0%
!!! TTTTTTTTTATTACAGGGAA+TGG + chr5.2:440319-440338 MS.gene40523:intron 20.0%
! AACAAATTAATGCAAGTCAA+TGG - chr5.2:440455-440474 None:intergenic 25.0%
! ATTGAATACATAATGCTTGA+TGG + chr5.2:441388-441407 MS.gene40523:CDS 25.0%
! CAAAGTTCATTCCAATTATA+TGG + chr5.2:439806-439825 MS.gene40523:CDS 25.0%
! CATATAATTGGAATGAACTT+TGG - chr5.2:439808-439827 None:intergenic 25.0%
! GAAGAAACAATAATTCTGAT+TGG + chr5.2:439842-439861 MS.gene40523:CDS 25.0%
! TACTTCAAAATTCAAACTTC+AGG - chr5.2:441521-441540 None:intergenic 25.0%
! TACTTTATGTATTTCTTCTC+AGG + chr5.2:440098-440117 MS.gene40523:CDS 25.0%
! TTTAAAAGTAACTTATCCTC+TGG + chr5.2:440168-440187 MS.gene40523:CDS 25.0%
!! CATTGTTAAGTCATTTCTTT+TGG + chr5.2:441027-441046 MS.gene40523:intron 25.0%
!! TTTTGGTAAAAGTTCTTGAA+CGG + chr5.2:441044-441063 MS.gene40523:intron 25.0%
!!! AGTCAATGGTTGATATTTTA+CGG - chr5.2:440441-440460 None:intergenic 25.0%
!!! TATACCCATTTTTGAGAATT+CGG - chr5.2:439782-439801 None:intergenic 25.0%
AACAGATGCTTCCATATAAT+TGG - chr5.2:439820-439839 None:intergenic 30.0%
AAGATCTTCTATATCCGTTA+GGG - chr5.2:441845-441864 None:intergenic 30.0%
AATGTACCAATAGAGTTGAA+AGG - chr5.2:441652-441671 None:intergenic 30.0%
ACAATAATTCTGATTGGGAA+TGG + chr5.2:439848-439867 MS.gene40523:CDS 30.0%
ATAATATTCGAACAACAGTC+CGG + chr5.2:441737-441756 MS.gene40523:CDS 30.0%
ATGAGATATGATACTCGTTT+GGG + chr5.2:440036-440055 MS.gene40523:CDS 30.0%
CAATAATTCTGATTGGGAAT+GGG + chr5.2:439849-439868 MS.gene40523:CDS 30.0%
CACTCAAATAGTAATTGCTA+TGG - chr5.2:440573-440592 None:intergenic 30.0%
CATTTCAGTTGTCATTGAAA+AGG + chr5.2:440402-440421 MS.gene40523:CDS 30.0%
CATTTGCATCTATAATAGGT+TGG + chr5.2:441093-441112 MS.gene40523:intron 30.0%
GACTGTTGTTCGAATATTAT+AGG - chr5.2:441737-441756 None:intergenic 30.0%
GGTACATTTGCATCTATAAT+AGG + chr5.2:441089-441108 MS.gene40523:intron 30.0%
TATGAGATATGATACTCGTT+TGG + chr5.2:440035-440054 MS.gene40523:CDS 30.0%
TATTGTCTGAATTGTTATGC+AGG + chr5.2:441612-441631 MS.gene40523:intron 30.0%
TGCAAGAATATCAAAGGAAA+AGG + chr5.2:441259-441278 MS.gene40523:CDS 30.0%
TTACCATGAAGACAACATTA+CGG - chr5.2:440239-440258 None:intergenic 30.0%
TTATGTATTTCTTCTCAGGT+TGG + chr5.2:440102-440121 MS.gene40523:CDS 30.0%
TTGATACCTTTCAACTCTAT+TGG + chr5.2:441643-441662 MS.gene40523:CDS 30.0%
! CATATGAAAAATCCTTTTCC+TGG - chr5.2:440923-440942 None:intergenic 30.0%
! CTTTTCAATGACAACTGAAA+TGG - chr5.2:440404-440423 None:intergenic 30.0%
! GTGAACAGTTTCAATGATTT+TGG + chr5.2:441331-441350 MS.gene40523:intron 30.0%
! TAAAGAAGATATGATTTGGC+TGG - chr5.2:440546-440565 None:intergenic 30.0%
! TTGATATTTTACGGTTGAGA+CGG - chr5.2:440432-440451 None:intergenic 30.0%
! TTTCCCTTTGGAAAAACTAA+TGG + chr5.2:441230-441249 MS.gene40523:CDS 30.0%
!! AAGAAATTTCTGGCTTATGA+AGG + chr5.2:441067-441086 MS.gene40523:intron 30.0%
!! AGAAATTTCTGGCTTATGAA+GGG + chr5.2:441068-441087 MS.gene40523:intron 30.0%
!!! AAAGTTTTTCAAGTGGTGTT+TGG + chr5.2:440704-440723 MS.gene40523:intron 30.0%
!!! AAGCCATTAGTTTTTCCAAA+GGG - chr5.2:441236-441255 None:intergenic 30.0%
AATGAAGAGAAGAAGAGAGA+GGG - chr5.2:439936-439955 None:intergenic 35.0%
ACAGCAGAATAGTTGTTCAA+AGG - chr5.2:440350-440369 None:intergenic 35.0%
AGAATCATGCAGAAAAGCTT+AGG + chr5.2:440760-440779 MS.gene40523:intron 35.0%
AGATCTTCTATATCCGTTAG+GGG - chr5.2:441844-441863 None:intergenic 35.0%
AGGAATGAATAAGCTGAAGA+AGG - chr5.2:439895-439914 None:intergenic 35.0%
ATGCTTGATCATAAGCTCTT+GGG - chr5.2:440841-440860 None:intergenic 35.0%
CAAGAGTTTGCAACATTAAC+AGG + chr5.2:440636-440655 MS.gene40523:intron 35.0%
CAAGATCTTCTATATCCGTT+AGG - chr5.2:441846-441865 None:intergenic 35.0%
CGAACCGAATTCTCAAAAAT+GGG + chr5.2:439775-439794 MS.gene40523:CDS 35.0%
CTGTTAATGTTGCAAACTCT+TGG - chr5.2:440638-440657 None:intergenic 35.0%
CTTCACTGCAAGAATATCAA+AGG + chr5.2:441253-441272 MS.gene40523:CDS 35.0%
CTTGTGATCAAGCTTGAAAA+CGG + chr5.2:439991-440010 MS.gene40523:CDS 35.0%
GATACTCGTTTGGGTAAATA+CGG + chr5.2:440045-440064 MS.gene40523:CDS 35.0%
TATCCGTAATGTTGTCTTCA+TGG + chr5.2:440233-440252 MS.gene40523:CDS 35.0%
TCTTGAACGGAAGAAATTTC+TGG + chr5.2:441057-441076 MS.gene40523:intron 35.0%
TGCAACATTAACAGGTCTTA+GGG + chr5.2:440644-440663 MS.gene40523:intron 35.0%
TTCAAGCTTGATCACAAGTT+TGG - chr5.2:439989-440008 None:intergenic 35.0%
TTGCAACATTAACAGGTCTT+AGG + chr5.2:440643-440662 MS.gene40523:intron 35.0%
TTTGAACAACTATTCTGCTG+TGG + chr5.2:440349-440368 MS.gene40523:CDS 35.0%
!! TCTATTGCGAAAGCTAGTTT+TGG - chr5.2:440896-440915 None:intergenic 35.0%
!!! GAAGCCATTAGTTTTTCCAA+AGG - chr5.2:441237-441256 None:intergenic 35.0%
AAAATCCGATCGGTATTCGA+CGG + chr5.2:439742-439761 MS.gene40523:CDS 40.0%
AACTTACCTGACAAGTCTCT+CGG + chr5.2:441808-441827 MS.gene40523:CDS 40.0%
AAGTGACGTTATCAGAAGAG+TGG - chr5.2:439966-439985 None:intergenic 40.0%
ATGAAGAGAAGAAGAGAGAG+GGG - chr5.2:439935-439954 None:intergenic 40.0%
ATTCTGTGCAACTGGAAGTA+TGG + chr5.2:440143-440162 MS.gene40523:CDS 40.0%
CATGCAGAAAAGCTTAGGTT+AGG + chr5.2:440765-440784 MS.gene40523:intron 40.0%
GAATGAAGAGAAGAAGAGAG+AGG - chr5.2:439937-439956 None:intergenic 40.0%
GATCTTCTATATCCGTTAGG+GGG - chr5.2:441843-441862 None:intergenic 40.0%
GATGCTTGATCATAAGCTCT+TGG - chr5.2:440842-440861 None:intergenic 40.0%
GCAATAGAACTTCCAGGAAA+AGG + chr5.2:440908-440927 MS.gene40523:intron 40.0%
GCGAACCGAATTCTCAAAAA+TGG + chr5.2:439774-439793 MS.gene40523:CDS 40.0%
GCTTCTCTATTCTCAACCAA+TGG + chr5.2:440806-440825 MS.gene40523:intron 40.0%
GGTTGTAAATTCTGTGCAAC+TGG + chr5.2:440135-440154 MS.gene40523:CDS 40.0%
GTGCAGTTCAACCCAATTAA+TGG - chr5.2:440484-440503 None:intergenic 40.0%
TGAAATCTGAGAATTCCCTG+AGG + chr5.2:440591-440610 MS.gene40523:intron 40.0%
TGCTTGATCATAAGCTCTTG+GGG - chr5.2:440840-440859 None:intergenic 40.0%
TTTAATAGCACTGCGCAACA+AGG - chr5.2:441584-441603 None:intergenic 40.0%
! ACATAATCTGCATTAGCCTC+AGG - chr5.2:440610-440629 None:intergenic 40.0%
! CATAATCTGCATTAGCCTCA+GGG - chr5.2:440609-440628 None:intergenic 40.0%
! GTTTTTCCAAAGGGAAAGCA+CGG - chr5.2:441227-441246 None:intergenic 40.0%
! TTCTGTGCAACTGGAAGTAT+GGG + chr5.2:440144-440163 MS.gene40523:CDS 40.0%
!! TCTCAGGTTGGATGCAAAAT+GGG + chr5.2:440114-440133 MS.gene40523:CDS 40.0%
!! TTCTCAGGTTGGATGCAAAA+TGG + chr5.2:440113-440132 MS.gene40523:CDS 40.0%
!! TTTTTCCAAAGGGAAAGCAC+GGG - chr5.2:441226-441245 None:intergenic 40.0%
!!! GAGGGGTTTTGAAGTTTGAA+CGG - chr5.2:439918-439937 None:intergenic 40.0%
AAGCTTCATAATGACGTGCC+TGG + chr5.2:441135-441154 MS.gene40523:CDS 45.0%
AATCTGTGCGCATCATGACT+GGG + chr5.2:440375-440394 MS.gene40523:CDS 45.0%
ACTCGTTTGGGTAAATACGG+TGG + chr5.2:440048-440067 MS.gene40523:CDS 45.0%
GCAGAAAAGCTTAGGTTAGG+TGG + chr5.2:440768-440787 MS.gene40523:intron 45.0%
GCTTTCGCAATAGAACTTCC+AGG + chr5.2:440902-440921 MS.gene40523:intron 45.0%
TAAGCTGAAGAAGGCAGAGA+AGG - chr5.2:439886-439905 None:intergenic 45.0%
TATCTGGCAACGGATGTCTT+GGG - chr5.2:441193-441212 None:intergenic 45.0%
TGGTGAAATTGTCGAGCAGT+TGG + chr5.2:440188-440207 MS.gene40523:CDS 45.0%
TTATCTGGCAACGGATGTCT+TGG - chr5.2:441194-441213 None:intergenic 45.0%
!!! GGGTTTTGAAGTTTGAACGG+AGG - chr5.2:439915-439934 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTATTACA+GGG + chr5.2:440314-440333 MS.gene40523:intron 5.0%
!!! TTTTTTTTTTTTTTTATTAC+AGG + chr5.2:440313-440332 MS.gene40523:intron 5.0%
AAAGTAGCTCTCAGACCACC+AGG - chr5.2:440084-440103 None:intergenic 50.0%
AACAACAGTCCGGAAGCAGA+TGG + chr5.2:441747-441766 MS.gene40523:CDS 50.0%
ACAACAGTCCGGAAGCAGAT+GGG + chr5.2:441748-441767 MS.gene40523:CDS 50.0%
CAGATGGGTGAGGACATAAG+TGG + chr5.2:441763-441782 MS.gene40523:CDS 50.0%
CAGCAGCTTTCCTAGTAGGT+GGG - chr5.2:441437-441456 None:intergenic 50.0%
CAGCAGGCATTATCTGGCAA+CGG - chr5.2:441203-441222 None:intergenic 50.0%
CGGAAATGCTAACCCCCTAA+CGG + chr5.2:441828-441847 MS.gene40523:CDS 50.0%
CTGCTCGACAATTTCACCAG+AGG - chr5.2:440187-440206 None:intergenic 50.0%
GAATCTGTGCGCATCATGAC+TGG + chr5.2:440374-440393 MS.gene40523:CDS 50.0%
GAGACTGCCAAGTTCAAACC+AGG - chr5.2:441156-441175 None:intergenic 50.0%
GCATTTCCGAGAGACTTGTC+AGG - chr5.2:441817-441836 None:intergenic 50.0%
GCTGCTGGAGACATTTGAAG+TGG + chr5.2:441450-441469 MS.gene40523:CDS 50.0%
TCTCCAGCAGCTTTCCTAGT+AGG - chr5.2:441441-441460 None:intergenic 50.0%
TCTTGGGGAAGCTGTTCCAT+TGG - chr5.2:440825-440844 None:intergenic 50.0%
! TGACGTGCCTGGTTTGAACT+TGG + chr5.2:441146-441165 MS.gene40523:CDS 50.0%
AAGTGGTGCGTGCGGACAAT+TGG + chr5.2:441780-441799 MS.gene40523:CDS 55.0%
CCACCTACTAGGAAAGCTGC+TGG + chr5.2:441435-441454 MS.gene40523:CDS 55.0%
CCAGCAGCTTTCCTAGTAGG+TGG - chr5.2:441438-441457 None:intergenic 55.0%
GAGGACATAAGTGGTGCGTG+CGG + chr5.2:441772-441791 MS.gene40523:CDS 55.0%
TGTCCTCACCCATCTGCTTC+CGG - chr5.2:441759-441778 None:intergenic 55.0%
AGTCCGGAAGCAGATGGGTG+AGG + chr5.2:441753-441772 MS.gene40523:CDS 60.0%
CACGGGCAGCAGGCATTATC+TGG - chr5.2:441209-441228 None:intergenic 60.0%
CGACGCCGTCGAATACCGAT+CGG - chr5.2:439750-439769 None:intergenic 60.0%
GAGCAGCATGCCCACCTACT+AGG + chr5.2:441424-441443 MS.gene40523:CDS 60.0%
TACGGTGGTCAACCTCGTCC+TGG + chr5.2:440063-440082 MS.gene40523:CDS 60.0%
TGCTGCCCGTGCTTTCCCTT+TGG + chr5.2:441218-441237 MS.gene40523:CDS 60.0%
TGGCAACGGATGTCTTGGGC+TGG - chr5.2:441189-441208 None:intergenic 60.0%
TGGTGCGTGCGGACAATTGG+TGG + chr5.2:441783-441802 MS.gene40523:CDS 60.0%
! AAAGGGAAAGCACGGGCAGC+AGG - chr5.2:441219-441238 None:intergenic 60.0%
GCTCTCAGACCACCAGGACG+AGG - chr5.2:440078-440097 None:intergenic 65.0%
GGTGGTCAACCTCGTCCTGG+TGG + chr5.2:440066-440085 MS.gene40523:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 439739 441873 439739 ID=MS.gene40523
chr5.2 mRNA 439739 441873 439739 ID=MS.gene40523.t1;Parent=MS.gene40523
chr5.2 exon 439739 440254 439739 ID=MS.gene40523.t1.exon1;Parent=MS.gene40523.t1
chr5.2 CDS 439739 440254 439739 ID=cds.MS.gene40523.t1;Parent=MS.gene40523.t1
chr5.2 exon 440335 440439 440335 ID=MS.gene40523.t1.exon2;Parent=MS.gene40523.t1
chr5.2 CDS 440335 440439 440335 ID=cds.MS.gene40523.t1;Parent=MS.gene40523.t1
chr5.2 exon 441111 441280 441111 ID=MS.gene40523.t1.exon3;Parent=MS.gene40523.t1
chr5.2 CDS 441111 441280 441111 ID=cds.MS.gene40523.t1;Parent=MS.gene40523.t1
chr5.2 exon 441372 441471 441372 ID=MS.gene40523.t1.exon4;Parent=MS.gene40523.t1
chr5.2 CDS 441372 441471 441372 ID=cds.MS.gene40523.t1;Parent=MS.gene40523.t1
chr5.2 exon 441634 441873 441634 ID=MS.gene40523.t1.exon5;Parent=MS.gene40523.t1
chr5.2 CDS 441634 441873 441634 ID=cds.MS.gene40523.t1;Parent=MS.gene40523.t1
Gene Sequence

>MS.gene40523

ATGAAAATCCGATCGGTATTCGACGGCGTCGAGTTGCGAACCGAATTCTCAAAAATGGGTATAGATCCAAAGTTCATTCCAATTATATGGAAGCATCTGTTTCGAAGAAACAATAATTCTGATTGGGAATGGGAAAAACACGTTCCTTCTCTGCCTTCTTCAGCTTATTCATTCCTCCGTTCAAACTTCAAAACCCCTCTCTCTTCTTCTCTTCATTCAGTTTTCCACTCTTCTGATAACGTCACTTCCAAACTTGTGATCAAGCTTGAAAACGGTGAATTTGTTGAAGCTGTGATTATGAGATATGATACTCGTTTGGGTAAATACGGTGGTCAACCTCGTCCTGGTGGTCTGAGAGCTACTTTATGTATTTCTTCTCAGGTTGGATGCAAAATGGGTTGTAAATTCTGTGCAACTGGAAGTATGGGATTTAAAAGTAACTTATCCTCTGGTGAAATTGTCGAGCAGTTGGTTCATGCTTCTACTTTTGCACATATCCGTAATGTTGTCTTCATGGTAATTAATTCTACTTTTTCTATGATTCGTAATGTCATGTTTTCTGTGTAATAAACTGTTTTTTTTTTTTTTTATTACAGGGAATGGGAGAGCCTTTGAACAACTATTCTGCTGTGGTAGAATCTGTGCGCATCATGACTGGGTCACCATTTCAGTTGTCATTGAAAAGGATTACCGTCTCAACCGTAAAATATCAACCATTGACTTGCATTAATTTGTTTTTATTCCATTAATTGGGTTGAACTGCACAAGATGATATACAACATACTTACTTTGTTTTAGAGTATTCCAGCCAAATCATATCTTCTTTATTAACCATAGCAATTACTATTTGAGTGAAATCTGAGAATTCCCTGAGGCTAATGCAGATTATGTTTATACCAAGAGTTTGCAACATTAACAGGTCTTAGGGTGCTTCTAAGAGCTTCTATATAACAAAAACACATTTTAAAGTTTTTCAAGTGGTGTTTGGTGTAATTTAATGTTTTTAGCTTTTGACTTTTAGAGAATCATGCAGAAAAGCTTAGGTTAGGTGGAAGTTTATTTTAAATGCTTCTCTATTCTCAACCAATGGAACAGCTTCCCCAAGAGCTTATGATCAAGCATCATCCAAACACAAAATTAACTTATCTAGAAGACCAAAACTAGCTTTCGCAATAGAACTTCCAGGAAAAGGATTTTTCATATGAACTTTTCTATCTAGATAAGCTTATCAACATCAAAAAAATATACATAAGTTTATCAAAACAGATATTTGCATTATCTGTTATTACATTGTTAAGTCATTTCTTTTGGTAAAAGTTCTTGAACGGAAGAAATTTCTGGCTTATGAAGGGTACATTTGCATCTATAATAGGTTGGCATCATTCATTCTATCAACAAGCTTCATAATGACGTGCCTGGTTTGAACTTGGCAGTCTCACTACATGCACCAGCCCAAGACATCCGTTGCCAGATAATGCCTGCTGCCCGTGCTTTCCCTTTGGAAAAACTAATGGCTTCACTGCAAGAATATCAAAGGAAAAGGTGATTATTCTACTTCTGAGTATACAGAAACTTCTTTTCTTTTTAGTGTTGTGAACAGTTTCAATGATTTTGGAGTCTGCGTTAATTACAGTCTGCAGAAAATATTAATTGAATACATAATGCTTGATGGTGTGAATGATGAAGAGCAGCATGCCCACCTACTAGGAAAGCTGCTGGAGACATTTGAAGTGGTAAATACTCAAACTTTACTTGATAGCAATTAGCATATCAGAAATTCCTGAAGTTTGAATTTTGAAGTAATTCTCAAATTGCGTTTGTTGATTTCTGAAGCAGACAATTCCTTGTTGCGCAGTGCTATTAAACTCTTGCTTATTGTCTGAATTGTTATGCAGGTAGTGAACTTGATACCTTTCAACTCTATTGGTACATTGAGTCAATTCAAATCTACTAGTGAGCAGAAAGTGTCTAAATTTCAGAAAATTTTAAGGGGTACCTATAATATTCGAACAACAGTCCGGAAGCAGATGGGTGAGGACATAAGTGGTGCGTGCGGACAATTGGTGGTTAACTTACCTGACAAGTCTCTCGGAAATGCTAACCCCCTAACGGATATAGAAGATCTTGTTATTTGA
Protein sequence

>MS.gene40523.t1

MKIRSVFDGVELRTEFSKMGIDPKFIPIIWKHLFRRNNNSDWEWEKHVPSLPSSAYSFLRSNFKTPLSSSLHSVFHSSDNVTSKLVIKLENGEFVEAVIMRYDTRLGKYGGQPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASTFAHIRNVVFMGMGEPLNNYSAVVESVRIMTGSPFQLSLKRITVSTVGIIHSINKLHNDVPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNLIPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPDKSLGNANPLTDIEDLVI