Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40738.t1 | CAB65283.1 | 100 | 84 | 0 | 0 | 1 | 84 | 1 | 84 | 3.70E-37 | 163.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40738.t1 | Q02921 | 61.4 | 57 | 22 | 0 | 27 | 83 | 17 | 73 | 6.0e-12 | 71.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40738.t1 | Q9SBR6 | 100.0 | 84 | 0 | 0 | 1 | 84 | 1 | 84 | 2.7e-37 | 163.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene40738 | -0.805432 | 1.34E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene40738 | 0.803558 | 3.29E-49 | -1.69E-46 |
| MS.gene055202 | MS.gene40738 | 0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene40738 | -0.803538 | 3.32E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene40738 | 0.823817 | 1.13E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene40738 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene40738 | 0.818474 | 1.92E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene40738 | 0.812605 | 3.90E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40738.t1 | MTR_3g110390 | 96.429 | 84 | 3 | 0 | 1 | 84 | 1 | 84 | 8.12e-55 | 166 |
| MS.gene40738.t1 | MTR_3g110390 | 95.238 | 84 | 3 | 1 | 1 | 84 | 1 | 83 | 3.62e-52 | 159 |
| MS.gene40738.t1 | MTR_1g007360 | 75.000 | 84 | 20 | 1 | 1 | 84 | 1 | 83 | 3.26e-43 | 136 |
| MS.gene40738.t1 | MTR_4g113820 | 56.140 | 57 | 25 | 0 | 27 | 83 | 21 | 77 | 8.78e-14 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40738.t1 | AT5G25940 | 59.091 | 66 | 27 | 0 | 19 | 84 | 16 | 81 | 1.05e-11 | 56.2 |
Find 23 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGTTCGGATGATTCCA+TGG | 0.467990 | 3.3:-91359510 | MS.gene40738:CDS |
| AACATCTTCTGCTCTTCTGC+GGG | 0.476450 | 3.3:+91361838 | None:intergenic |
| AGGTGTGCGTGCTGGATTCA+AGG | 0.476456 | 3.3:-91361516 | MS.gene40738:CDS |
| GGATTCAAGGCAGCCGGCAT+CGG | 0.492095 | 3.3:-91361503 | MS.gene40738:CDS |
| ATTCACAGTTGGTTGCAGTT+CGG | 0.494528 | 3.3:-91359522 | MS.gene40738:intron |
| AAACCTCAATTATACTGCTC+AGG | 0.499730 | 3.3:-91359479 | MS.gene40738:CDS |
| CGTGCTGGATTCAAGGCAGC+CGG | 0.500054 | 3.3:-91361509 | MS.gene40738:CDS |
| CACATGTCCCTCAGTTCTGA+TGG | 0.505127 | 3.3:+91361898 | None:intergenic |
| TTGAGGTTTGCCTTTGCCCA+TGG | 0.506394 | 3.3:+91359493 | None:intergenic |
| CAACATCTTCTGCTCTTCTG+CGG | 0.519948 | 3.3:+91361837 | None:intergenic |
| AGGTCTAGTCAATGTACAGC+TGG | 0.529239 | 3.3:-91361814 | MS.gene40738:intron |
| CAGGCGCTTATCATATCTGC+CGG | 0.532856 | 3.3:-91359460 | None:intergenic |
| TATGCAGAAGGTGTGCGTGC+TGG | 0.539033 | 3.3:-91361524 | MS.gene40738:intron |
| GCGCCTGAGCAGTATAATTG+AGG | 0.541209 | 3.3:+91359476 | None:intergenic |
| GGCAGCCGGCATCGGATGTG+TGG | 0.545487 | 3.3:-91361495 | MS.gene40738:CDS |
| ACTCGCCACACATCCGATGC+CGG | 0.574386 | 3.3:+91361490 | None:intergenic |
| TGCAGTTCGGATGATTCCAT+GGG | 0.575792 | 3.3:-91359509 | MS.gene40738:CDS |
| CATCAGAACTGAGGGACATG+TGG | 0.592369 | 3.3:-91361897 | MS.gene40738:CDS |
| GGGAATTCCATCAGAACTGA+GGG | 0.594629 | 3.3:-91361905 | MS.gene40738:CDS |
| CAGAAGAGCAGAAGATGTTG+AGG | 0.594698 | 3.3:-91361834 | MS.gene40738:CDS |
| TCGGATGATTCCATGGGCAA+AGG | 0.603271 | 3.3:-91359503 | MS.gene40738:CDS |
| AAGCTTACGTACAGTAGGCA+CGG | 0.644261 | 3.3:+91361466 | None:intergenic |
| TGGGAATTCCATCAGAACTG+AGG | 0.659138 | 3.3:-91361906 | MS.gene40738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATAATATTTTTTTT+CGG | + | chr3.3:91361264-91361283 | None:intergenic | 0.0% |
| !!! | TATTTTTTATTTTTTTAATA+GGG | - | chr3.3:91360329-91360348 | MS.gene40738:intron | 0.0% |
| !!! | TATTTTTTTTATTAAAAATA+AGG | - | chr3.3:91361568-91361587 | MS.gene40738:intron | 0.0% |
| !!! | TTATTTTTATTTTTTTAATA+AGG | + | chr3.3:91361607-91361626 | None:intergenic | 0.0% |
| !!! | TTATTTTTTATTTTTTTAAT+AGG | - | chr3.3:91360328-91360347 | MS.gene40738:intron | 0.0% |
| !!! | TTTTTTAATTATTAAAAAAT+AGG | + | chr3.3:91360368-91360387 | None:intergenic | 0.0% |
| !! | AAAAAAATGAAAAAAAATTC+TGG | - | chr3.3:91360462-91360481 | MS.gene40738:intron | 10.0% |
| !! | AAAAAAATGAAAAAAAATTC+TGG | + | chr3.3:91360481-91360462 | None:intergenic | 10.0% |
| !! | TAAAAATGAAAACAAAATTA+TGG | + | chr3.3:91361406-91361425 | None:intergenic | 10.0% |
| !! | TTAAAAAAATGAAAACATTA+TGG | + | chr3.3:91361349-91361368 | None:intergenic | 10.0% |
| !! | TTAAAAAAATGATAACATTA+TGG | - | chr3.3:91360581-91360600 | MS.gene40738:intron | 10.0% |
| !! | TTAAAAATAAAAGTAAAATC+TGG | + | chr3.3:91361377-91361396 | None:intergenic | 10.0% |
| !!! | AAAAAAATCATATCTTTTTT+CGG | - | chr3.3:91360666-91360685 | MS.gene40738:intron | 10.0% |
| !!! | ACTAAAAATACATATTTTTT+TGG | - | chr3.3:91359965-91359984 | MS.gene40738:intron | 10.0% |
| !!! | TATTAATTTTTCCAATTATT+CGG | + | chr3.3:91360505-91360524 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTTTCATTTTTC+CGG | - | chr3.3:91361274-91361293 | MS.gene40738:intron | 10.0% |
| !!! | TTTTATTTTTAAAATTTTCC+AGG | + | chr3.3:91361404-91361385 | None:intergenic | 10.0% |
| !! | AAAAAAACAGAAATTCTTTA+AGG | + | chr3.3:91360071-91360090 | None:intergenic | 15.0% |
| !! | AAAGCTTAACATTAAAAAAA+GGG | + | chr3.3:91361821-91361840 | None:intergenic | 15.0% |
| !! | ATAAAAAAATACCGAATAAT+TGG | - | chr3.3:91360491-91360510 | MS.gene40738:intron | 15.0% |
| !! | ATGAATAAGAAAATTAAAAC+TGG | + | chr3.3:91359615-91359634 | None:intergenic | 15.0% |
| !! | TAAAGCTTAACATTAAAAAA+AGG | + | chr3.3:91361822-91361841 | None:intergenic | 15.0% |
| !!! | AACAAACTTTAAGAAAATTA+TGG | - | chr3.3:91359992-91360011 | MS.gene40738:intron | 15.0% |
| !!! | TGATTTTTTTTTCATTTTTC+CGG | + | chr3.3:91360656-91360675 | None:intergenic | 15.0% |
| !!! | TTTTTCAAAAATTTCAAGAT+TGG | + | chr3.3:91360815-91360834 | None:intergenic | 15.0% |
| !! | ATGTAATATCTCAAATGTAA+CGG | + | chr3.3:91360120-91360139 | None:intergenic | 20.0% |
| !! | CATATTAAGAAAATGACAAA+CGG | + | chr3.3:91359828-91359847 | None:intergenic | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | - | chr3.3:91361220-91361239 | MS.gene40738:intron | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | + | chr3.3:91361239-91361220 | None:intergenic | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | - | chr3.3:91360709-91360728 | MS.gene40738:intron | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | + | chr3.3:91360728-91360709 | None:intergenic | 20.0% |
| !! | TAAAAATGAAAACAAAAACC+TGG | - | chr3.3:91360523-91360542 | MS.gene40738:intron | 20.0% |
| !! | TTTGTCAAAAATTTCAAGAT+TGG | - | chr3.3:91361115-91361134 | MS.gene40738:intron | 20.0% |
| ! | ATACATTGTATCCTGTTATT+CGG | - | chr3.3:91360743-91360762 | MS.gene40738:intron | 25.0% |
| ! | ATACATTGTATCCTGTTATT+CGG | + | chr3.3:91360762-91360743 | None:intergenic | 25.0% |
| !! | ATTTTCATCAATCAAGTCAT+AGG | - | chr3.3:91359713-91359732 | MS.gene40738:intron | 25.0% |
| !! | TCATTTTCTTAATATGCAGA+AGG | - | chr3.3:91359832-91359851 | MS.gene40738:intron | 25.0% |
| !!! | ATCGAAAGAATCTTTTTTAC+AGG | - | chr3.3:91361747-91361766 | MS.gene40738:intron | 25.0% |
| !!! | ATTTTTTTAATAAGGACACG+TGG | + | chr3.3:91361599-91361618 | None:intergenic | 25.0% |
| !!! | CGAAAGAATCTTTTTTACAA+GGG | + | chr3.3:91360180-91360199 | None:intergenic | 25.0% |
| !!! | GAAAGAATCTTTTTTACAAG+GGG | + | chr3.3:91360179-91360198 | None:intergenic | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+AGG | + | chr3.3:91361767-91361748 | None:intergenic | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+GGG | - | chr3.3:91361748-91361767 | MS.gene40738:intron | 25.0% |
| !!! | TTTCCAGATTTTTTCAATAC+CGG | - | chr3.3:91360634-91360653 | MS.gene40738:intron | 25.0% |
| !!! | TTTCCAGATTTTTTCAATAC+CGG | + | chr3.3:91360653-91360634 | None:intergenic | 25.0% |
| ATTAAAAGCTTACGTACAGT+AGG | + | chr3.3:91359910-91359929 | None:intergenic | 30.0% | |
| GACTTGATTGATGAAAATCT+TGG | + | chr3.3:91359711-91359730 | None:intergenic | 30.0% | |
| TTATGGATTTGAGAAAACCA+TGG | - | chr3.3:91360009-91360028 | MS.gene40738:intron | 30.0% | |
| ! | ATTTTTACCCCCTGTAATAT+AGG | + | chr3.3:91361791-91361810 | None:intergenic | 30.0% |
| ! | CAATGTATATTGATTGACAC+CGG | - | chr3.3:91361199-91361218 | MS.gene40738:intron | 30.0% |
| ! | CAATGTATATTGATTGACAC+CGG | + | chr3.3:91361218-91361199 | None:intergenic | 30.0% |
| ! | TACTGTACGTAAGCTTTTAA+TGG | - | chr3.3:91359909-91359928 | MS.gene40738:intron | 30.0% |
| ! | TTAGTGTCTACTAGTTTCAA+TGG | + | chr3.3:91360967-91360986 | None:intergenic | 30.0% |
| ! | TTTCCGGTATTGAAAAAATC+TGG | - | chr3.3:91361290-91361309 | MS.gene40738:intron | 30.0% |
| ! | TTTCCGGTATTGAAAAAATC+TGG | + | chr3.3:91361309-91361290 | None:intergenic | 30.0% |
| !! | AGCTTTAGAAAATTCACAGT+TGG | - | chr3.3:91361835-91361854 | MS.gene40738:CDS | 30.0% |
| !! | CAGCAAACTTGTGTTTTTAT+TGG | + | chr3.3:91359501-91359520 | None:intergenic | 30.0% |
| !! | GCTTTTAATGGACAAAACTT+AGG | - | chr3.3:91359921-91359940 | MS.gene40738:intron | 30.0% |
| !! | TATCTCAAATGTAACGGATA+AGG | + | chr3.3:91360114-91360133 | None:intergenic | 30.0% |
| !!! | AAAGAATCTTTTTTACAGGG+GGG | - | chr3.3:91361751-91361770 | MS.gene40738:intron | 30.0% |
| !!! | ATTTTTTTAATAGGGACACG+TGG | - | chr3.3:91360337-91360356 | MS.gene40738:intron | 30.0% |
| !!! | CGAAAGAATCTTTTTTACAG+GGG | - | chr3.3:91361749-91361768 | MS.gene40738:intron | 30.0% |
| !!! | GAAAGAATCTTTTTTACAGG+GGG | - | chr3.3:91361750-91361769 | MS.gene40738:intron | 30.0% |
| AAAAACCATGTCCGAATAAC+AGG | - | chr3.3:91361173-91361192 | MS.gene40738:intron | 35.0% | |
| AAAAACCATGTCCGAATAAC+AGG | + | chr3.3:91361192-91361173 | None:intergenic | 35.0% | |
| AAACCTCAATTATACTGCTC+AGG | - | chr3.3:91361889-91361908 | MS.gene40738:CDS | 35.0% | |
| CTTCTTAACTAAGCTATCCA+TGG | + | chr3.3:91360029-91360048 | None:intergenic | 35.0% | |
| GAATCTTCATATTTCAGGGT+TGG | - | chr3.3:91361723-91361742 | MS.gene40738:intron | 35.0% | |
| GAATCTTCATATTTCAGGGT+TGG | + | chr3.3:91361742-91361723 | None:intergenic | 35.0% | |
| GACGGAATCTTCATATTTCA+GGG | - | chr3.3:91361719-91361738 | MS.gene40738:intron | 35.0% | |
| GACGGAATCTTCATATTTCA+GGG | + | chr3.3:91361738-91361719 | None:intergenic | 35.0% | |
| TCAATCAAGTCATAGGTGAT+AGG | - | chr3.3:91359720-91359739 | MS.gene40738:intron | 35.0% | |
| ! | TTTTTACCCCCCTGTAATAT+AGG | - | chr3.3:91360139-91360158 | MS.gene40738:intron | 35.0% |
| !!! | CTTTTTTACAAGGGGAAAAC+CGG | + | chr3.3:91360171-91360190 | None:intergenic | 35.0% |
| ATTCACAGTTGGTTGCAGTT+CGG | - | chr3.3:91361846-91361865 | MS.gene40738:CDS | 40.0% | |
| CATAGGTGATAGGTATAGTG+TGG | - | chr3.3:91359730-91359749 | MS.gene40738:intron | 40.0% | |
| CGACGGAATCTTCATATTTC+AGG | - | chr3.3:91361718-91361737 | MS.gene40738:intron | 40.0% | |
| CGACGGAATCTTCATATTTC+AGG | + | chr3.3:91361737-91361718 | None:intergenic | 40.0% | |
| CGTCATCAAAAAAGATGACG+TGG | - | chr3.3:91361646-91361665 | MS.gene40738:intron | 40.0% | |
| TGTATCCTGTTATTCGGACA+TGG | - | chr3.3:91360749-91360768 | MS.gene40738:intron | 40.0% | |
| TGTATCCTGTTATTCGGACA+TGG | + | chr3.3:91360768-91360749 | None:intergenic | 40.0% | |
| ! | AGTTCTGATGGAATTCCCAT+CGG | + | chr3.3:91359461-91359480 | None:intergenic | 40.0% |
| !!! | CGTCATCTTTTTTGATGACG+TGG | + | chr3.3:91361646-91361665 | None:intergenic | 40.0% |
| !!! | TTTTTTACAGGGGGGAAAAC+CGG | - | chr3.3:91361759-91361778 | MS.gene40738:intron | 40.0% |
| AAAACACCCCTGGTCAAATC+TGG | - | chr3.3:91360231-91360250 | MS.gene40738:intron | 45.0% | |
| AAAACACCCCTGGTCAAATC+TGG | + | chr3.3:91360250-91360231 | None:intergenic | 45.0% | |
| AACATCTTCTGCTCTTCTGC+GGG | + | chr3.3:91359533-91359552 | None:intergenic | 45.0% | |
| AACTCGCCTATATTACAGGG+GGG | + | chr3.3:91361801-91361782 | None:intergenic | 45.0% | |
| AAGCTTACGTACAGTAGGCA+CGG | + | chr3.3:91359905-91359924 | None:intergenic | 45.0% | |
| AGGTCTAGTCAATGTACAGC+TGG | - | chr3.3:91359554-91359573 | MS.gene40738:intron | 45.0% | |
| CAACATCTTCTGCTCTTCTG+CGG | + | chr3.3:91359534-91359553 | None:intergenic | 45.0% | |
| CAGAAGAGCAGAAGATGTTG+AGG | - | chr3.3:91359534-91359553 | MS.gene40738:intron | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | - | chr3.3:91360149-91360168 | MS.gene40738:intron | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | + | chr3.3:91360168-91360149 | None:intergenic | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | - | chr3.3:91361779-91361798 | MS.gene40738:intron | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | + | chr3.3:91361798-91361779 | None:intergenic | 45.0% | |
| CGTCATCAAAAAAGGTGACG+TGG | + | chr3.3:91360283-91360302 | None:intergenic | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | - | chr3.3:91361781-91361800 | MS.gene40738:intron | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | + | chr3.3:91361800-91361781 | None:intergenic | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | - | chr3.3:91361780-91361799 | MS.gene40738:intron | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | + | chr3.3:91361799-91361780 | None:intergenic | 45.0% | |
| GGGAATTCCATCAGAACTGA+GGG | - | chr3.3:91359463-91359482 | MS.gene40738:CDS | 45.0% | |
| TGCAGTTCGGATGATTCCAT+GGG | - | chr3.3:91361859-91361878 | MS.gene40738:CDS | 45.0% | |
| TGGGAATTCCATCAGAACTG+AGG | - | chr3.3:91359462-91359481 | MS.gene40738:CDS | 45.0% | |
| TTGCAGTTCGGATGATTCCA+TGG | - | chr3.3:91361858-91361877 | MS.gene40738:CDS | 45.0% | |
| !!! | CGTCACCTTTTTTGATGACG+TGG | - | chr3.3:91360283-91360302 | MS.gene40738:intron | 45.0% |
| !! | AAAAAAGATAAAAAAAAATA+TGG | + | chr3.3:91361057-91361076 | None:intergenic | 5.0% |
| CATCAGAACTGAGGGACATG+TGG | - | chr3.3:91359471-91359490 | MS.gene40738:CDS | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | - | chr3.3:91361778-91361797 | MS.gene40738:intron | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | + | chr3.3:91361797-91361778 | None:intergenic | 50.0% | |
| GCGCCTGAGCAGTATAATTG+AGG | + | chr3.3:91361895-91361914 | None:intergenic | 50.0% | |
| GCGTGCCACGTCATCAAAAA+AGG | + | chr3.3:91361657-91361638 | None:intergenic | 50.0% | |
| TCGGATGATTCCATGGGCAA+AGG | - | chr3.3:91361865-91361884 | MS.gene40738:CDS | 50.0% | |
| TTGAGGTTTGCCTTTGCCCA+TGG | + | chr3.3:91361878-91361897 | None:intergenic | 50.0% | |
| ! | CACATGTCCCTCAGTTCTGA+TGG | + | chr3.3:91359473-91359492 | None:intergenic | 50.0% |
| !!! | TTGACCAGGGGTGTTTTCGA+CGG | - | chr3.3:91361701-91361720 | MS.gene40738:intron | 50.0% |
| !!! | TTGACCAGGGGTGTTTTCGA+CGG | + | chr3.3:91361720-91361701 | None:intergenic | 50.0% |
| AGGTGTGCGTGCTGGATTCA+AGG | - | chr3.3:91359852-91359871 | MS.gene40738:intron | 55.0% | |
| CGTGTGCCAGATTTGACCAG+GGG | - | chr3.3:91361689-91361708 | MS.gene40738:intron | 55.0% | |
| CGTGTGCCAGATTTGACCAG+GGG | + | chr3.3:91361708-91361689 | None:intergenic | 55.0% | |
| GATTCCGTCGAAAACACCCC+TGG | - | chr3.3:91360221-91360240 | MS.gene40738:intron | 55.0% | |
| GATTCCGTCGAAAACACCCC+TGG | + | chr3.3:91360240-91360221 | None:intergenic | 55.0% | |
| GCGTGTGCCAGATTTGACCA+GGG | - | chr3.3:91361688-91361707 | MS.gene40738:intron | 55.0% | |
| GCGTGTGCCAGATTTGACCA+GGG | + | chr3.3:91361707-91361688 | None:intergenic | 55.0% | |
| ! | TATGCAGAAGGTGTGCGTGC+TGG | - | chr3.3:91359844-91359863 | MS.gene40738:intron | 55.0% |
| ACTCGCCACACATCCGATGC+CGG | + | chr3.3:91359881-91359900 | None:intergenic | 60.0% | |
| CGTGCTGGATTCAAGGCAGC+CGG | - | chr3.3:91359859-91359878 | MS.gene40738:intron | 60.0% | |
| GGATTCAAGGCAGCCGGCAT+CGG | - | chr3.3:91359865-91359884 | MS.gene40738:intron | 60.0% | |
| GGCGTGTGCCAGATTTGACC+AGG | - | chr3.3:91361687-91361706 | MS.gene40738:intron | 60.0% | |
| GGCGTGTGCCAGATTTGACC+AGG | + | chr3.3:91361706-91361687 | None:intergenic | 60.0% | |
| GGTCAAATCTGGCACACGCC+AGG | - | chr3.3:91360242-91360261 | MS.gene40738:intron | 60.0% | |
| GGTCAAATCTGGCACACGCC+AGG | + | chr3.3:91360261-91360242 | None:intergenic | 60.0% | |
| !! | GCACACGCCAGGTGCTGATG+TGG | - | chr3.3:91360253-91360272 | MS.gene40738:intron | 65.0% |
| !! | GCACACGCCAGGTGCTGATG+TGG | + | chr3.3:91360272-91360253 | None:intergenic | 65.0% |
| TGGCGCGCCACATCAGCACC+TGG | - | chr3.3:91361666-91361685 | MS.gene40738:intron | 70.0% | |
| TGGCGCGCCACATCAGCACC+TGG | + | chr3.3:91361685-91361666 | None:intergenic | 70.0% | |
| ! | GGCAGCCGGCATCGGATGTG+TGG | - | chr3.3:91359873-91359892 | MS.gene40738:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91359461 | 91361929 | 91359461 | ID=MS.gene40738 |
| chr3.3 | mRNA | 91359461 | 91361929 | 91359461 | ID=MS.gene40738.t1;Parent=MS.gene40738 |
| chr3.3 | exon | 91361815 | 91361929 | 91361815 | ID=MS.gene40738.t1.exon1;Parent=MS.gene40738.t1 |
| chr3.3 | CDS | 91361815 | 91361929 | 91361815 | ID=cds.MS.gene40738.t1;Parent=MS.gene40738.t1 |
| chr3.3 | exon | 91361478 | 91361539 | 91361478 | ID=MS.gene40738.t1.exon2;Parent=MS.gene40738.t1 |
| chr3.3 | CDS | 91361478 | 91361539 | 91361478 | ID=cds.MS.gene40738.t1;Parent=MS.gene40738.t1 |
| chr3.3 | exon | 91359461 | 91359536 | 91359461 | ID=MS.gene40738.t1.exon3;Parent=MS.gene40738.t1 |
| chr3.3 | CDS | 91359461 | 91359536 | 91359461 | ID=cds.MS.gene40738.t1;Parent=MS.gene40738.t1 |
| Gene Sequence |
| Protein sequence |
