AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41181

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41181.t1 MTR_4g063780 95.549 337 11 2 1 336 1 334 0.0 657
MS.gene41181.t1 MTR_2g096740 41.667 360 129 17 1 336 1 303 9.30e-64 204
MS.gene41181.t1 MTR_7g059400 44.144 333 129 10 1 312 1 297 2.30e-61 199
MS.gene41181.t1 MTR_2g096740 39.167 360 123 15 1 336 1 288 9.63e-58 188
MS.gene41181.t1 MTR_4g022370 38.857 350 154 12 1 317 1 323 2.12e-55 185
MS.gene41181.t1 MTR_7g024670 59.028 144 52 4 1 139 1 142 1.66e-46 162
MS.gene41181.t1 MTR_5g031440 87.500 56 7 0 70 125 38 93 1.41e-32 124
MS.gene41181.t1 MTR_3g077750 54.867 113 44 3 48 160 37 142 2.00e-32 123
MS.gene41181.t1 MTR_4g088580 66.667 81 23 1 76 156 56 132 5.42e-32 123
MS.gene41181.t1 MTR_2g093220 80.328 61 12 0 69 129 34 94 1.90e-31 120
MS.gene41181.t1 MTR_4g461080 66.667 78 25 1 50 127 5 81 1.93e-31 119
MS.gene41181.t1 MTR_8g479350 60.674 89 26 1 75 163 68 147 2.11e-31 121
MS.gene41181.t1 MTR_8g068210 69.620 79 20 2 74 152 31 105 1.17e-30 119
MS.gene41181.t1 MTR_8g027295 57.732 97 39 1 62 158 11 105 1.24e-30 117
MS.gene41181.t1 MTR_3g091820 50.769 130 54 3 56 183 28 149 8.20e-30 115
MS.gene41181.t1 MTR_8g079060 54.717 106 32 3 54 159 17 106 9.12e-30 114
MS.gene41181.t1 MTR_1g077600 60.000 80 30 1 52 129 18 97 3.02e-29 113
MS.gene41181.t1 MTR_1g077600 60.000 80 30 1 52 129 18 97 3.84e-29 114
MS.gene41181.t1 MTR_3g090430 63.514 74 27 0 56 129 32 105 9.48e-29 113
MS.gene41181.t1 MTR_8g015840 58.750 80 30 1 59 135 1 80 1.57e-28 110
MS.gene41181.t1 MTR_2g014060 67.606 71 22 1 57 126 6 76 2.44e-28 112
MS.gene41181.t1 MTR_4g109980 82.692 52 9 0 74 125 39 90 3.73e-28 112
MS.gene41181.t1 MTR_2g014170 88.000 50 6 0 74 123 44 93 5.94e-28 111
MS.gene41181.t1 MTR_1g056810 63.636 77 27 1 77 153 14 89 6.24e-28 110
MS.gene41181.t1 MTR_2g059540 84.000 50 8 0 74 123 30 79 9.66e-27 105
MS.gene41181.t1 MTR_4g089095 71.186 59 15 1 75 133 50 106 5.81e-25 102
MS.gene41181.t1 MTR_4g089095 71.186 59 15 1 75 133 16 72 7.25e-25 101
MS.gene41181.t1 MTR_2g013370 66.129 62 16 1 74 135 45 101 2.20e-24 100
MS.gene41181.t1 MTR_8g044220 66.102 59 20 0 71 129 114 172 3.15e-24 102
MS.gene41181.t1 MTR_2g016030 63.380 71 25 1 72 142 44 113 3.71e-24 97.1
MS.gene41181.t1 MTR_6g027450 63.333 60 22 0 68 127 82 141 7.85e-24 100
MS.gene41181.t1 MTR_6g012450 66.667 60 20 0 68 127 129 188 1.24e-23 101
MS.gene41181.t1 MTR_4g082060 58.571 70 26 1 58 127 108 174 1.91e-23 100
MS.gene41181.t1 MTR_7g010950 49.412 85 43 0 68 152 128 212 2.35e-23 100
MS.gene41181.t1 MTR_7g086780 60.000 70 25 2 60 129 86 152 2.72e-23 100
MS.gene41181.t1 MTR_3g435480 62.687 67 24 1 68 134 129 194 3.51e-23 100
MS.gene41181.t1 MTR_6g027460 61.667 60 23 0 68 127 89 148 5.36e-23 98.6
MS.gene41181.t1 MTR_5g041420 43.820 89 50 0 39 127 102 190 1.49e-21 94.0
MS.gene41181.t1 MTR_5g041530 69.091 55 16 1 77 131 142 195 1.69e-20 91.7
MS.gene41181.t1 MTR_5g041380 48.780 82 41 1 59 140 111 191 6.65e-20 89.7
MS.gene41181.t1 MTR_5g041400 50.725 69 34 0 59 127 103 171 1.42e-19 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41181.t1 AT3G55370 42.164 268 104 8 1 251 1 234 2.54e-51 174
MS.gene41181.t1 AT3G55370 42.164 268 104 8 1 251 1 234 2.57e-51 173
MS.gene41181.t1 AT3G55370 39.809 314 118 11 32 324 85 348 1.15e-48 167
MS.gene41181.t1 AT1G07640 42.308 286 145 10 57 335 3 275 3.45e-48 163
MS.gene41181.t1 AT1G07640 42.105 285 147 9 57 335 59 331 1.70e-47 163
MS.gene41181.t1 AT1G07640 42.105 285 147 9 57 335 67 339 2.02e-47 163
MS.gene41181.t1 AT2G37590 53.846 156 32 2 1 129 1 143 8.30e-47 161
MS.gene41181.t1 AT2G28810 36.685 368 160 15 1 332 1 331 2.11e-45 158
MS.gene41181.t1 AT5G02460 88.158 76 9 0 54 129 74 149 4.96e-44 156
MS.gene41181.t1 AT2G28810 38.776 294 125 11 57 332 58 314 3.83e-42 149
MS.gene41181.t1 AT5G60200 76.389 72 13 1 70 141 50 117 1.89e-34 127
MS.gene41181.t1 AT1G51700 58.889 90 29 1 70 159 28 109 1.41e-31 117
MS.gene41181.t1 AT3G45610 53.409 88 39 1 70 155 35 122 2.93e-31 118
MS.gene41181.t1 AT5G60850 62.791 86 25 2 74 159 50 128 3.27e-31 119
MS.gene41181.t1 AT4G38000 77.049 61 14 0 69 129 35 95 2.34e-30 115
MS.gene41181.t1 AT5G65590 81.034 58 11 0 75 132 41 98 4.67e-30 117
MS.gene41181.t1 AT3G21270 82.143 56 10 0 75 130 29 84 4.27e-29 111
MS.gene41181.t1 AT4G24060 50.000 112 56 0 69 180 47 158 2.06e-28 113
MS.gene41181.t1 AT1G28310 79.661 59 11 1 75 133 27 84 3.83e-28 111
MS.gene41181.t1 AT3G52440 70.588 68 16 1 77 144 27 90 4.24e-28 110
MS.gene41181.t1 AT3G52440 70.588 68 16 1 77 144 46 109 4.76e-28 110
MS.gene41181.t1 AT2G28510 73.846 65 13 1 74 138 47 107 5.27e-28 110
MS.gene41181.t1 AT1G28310 79.661 59 11 1 75 133 51 108 5.79e-28 111
MS.gene41181.t1 AT5G62940 77.193 57 13 0 69 125 67 123 8.00e-28 112
MS.gene41181.t1 AT5G66940 65.714 70 21 1 75 144 32 98 2.52e-27 107
MS.gene41181.t1 AT3G61850 58.889 90 29 2 71 156 58 143 2.59e-27 108
MS.gene41181.t1 AT3G61850 58.889 90 29 2 71 156 58 143 2.59e-27 108
MS.gene41181.t1 AT3G61850 58.889 90 29 2 71 156 70 155 2.86e-27 108
MS.gene41181.t1 AT3G61850 58.889 90 29 2 71 156 58 143 3.13e-27 109
MS.gene41181.t1 AT1G21340 71.875 64 12 1 74 137 37 94 3.32e-27 108
MS.gene41181.t1 AT3G61850 58.889 90 29 2 71 156 70 155 3.86e-27 109
MS.gene41181.t1 AT4G21050 49.558 113 42 3 68 179 17 115 5.57e-27 106
MS.gene41181.t1 AT3G50410 70.690 58 17 0 75 132 30 87 1.61e-26 105
MS.gene41181.t1 AT2G46590 56.250 80 35 0 43 122 36 115 2.92e-26 107
MS.gene41181.t1 AT2G46590 56.250 80 35 0 43 122 48 127 3.42e-26 107
MS.gene41181.t1 AT4G00940 63.514 74 23 2 59 129 50 122 1.30e-25 104
MS.gene41181.t1 AT4G00940 63.514 74 23 2 59 129 50 122 1.30e-25 104
MS.gene41181.t1 AT4G00940 63.514 74 23 2 59 129 50 122 1.30e-25 104
MS.gene41181.t1 AT1G64620 66.176 68 23 0 56 123 30 97 4.60e-25 103
MS.gene41181.t1 AT1G47655 70.000 60 16 1 66 123 18 77 2.09e-24 99.4
MS.gene41181.t1 AT2G34140 58.442 77 28 2 53 129 39 111 3.70e-24 97.4
MS.gene41181.t1 AT1G29160 69.492 59 17 1 71 129 58 115 1.26e-23 96.3
MS.gene41181.t1 AT4G21040 56.250 80 30 1 77 156 27 101 3.59e-23 96.3
MS.gene41181.t1 AT5G39660 66.667 63 20 1 67 129 130 191 4.07e-23 99.8
MS.gene41181.t1 AT5G39660 66.667 63 20 1 67 129 130 191 4.07e-23 99.8
MS.gene41181.t1 AT5G39660 66.667 63 20 1 67 129 130 191 4.07e-23 99.8
MS.gene41181.t1 AT1G26790 54.412 68 31 0 60 127 96 163 4.46e-23 99.0
MS.gene41181.t1 AT5G62430 56.000 75 31 2 58 131 36 109 4.66e-23 97.4
MS.gene41181.t1 AT3G47500 58.824 68 28 0 68 135 103 170 9.22e-23 99.0
MS.gene41181.t1 AT1G69570 61.667 60 23 0 68 127 125 184 2.25e-22 97.1
MS.gene41181.t1 AT4G21080 63.492 63 18 1 77 139 27 84 7.99e-22 93.2
MS.gene41181.t1 AT4G21030 54.098 61 25 1 68 128 17 74 2.07e-15 73.9

Find 85 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGACATGTAGGCGTTAT+TGG 0.207030 4.1:-36758050 MS.gene41181:CDS
GTTGTTGTTGATGTTGTTCT+TGG 0.217968 4.1:+36757758 None:intergenic
TCAAGAGCCACCGGTTAAAA+TGG 0.246428 4.1:-36757485 MS.gene41181:CDS
TCTTGAGAGTTTGTTGAATT+AGG 0.247926 4.1:+36757940 None:intergenic
CCATTTGCTTGTTGATGATT+TGG 0.249048 4.1:+36758297 None:intergenic
ACCAACAACAATACTATTCT+TGG 0.250684 4.1:-36757405 MS.gene41181:CDS
GTTTCTGCTTCTGCTGTTGC+TGG 0.257390 4.1:-36757673 MS.gene41181:CDS
GATCATATGGGGTTTCAAAT+TGG 0.271163 4.1:-36757727 MS.gene41181:CDS
TATTCTTGGAATGATTTATC+AGG 0.288988 4.1:-36757391 MS.gene41181:CDS
TACTGGTGGCGGTGGTACTA+TGG 0.292815 4.1:-36758223 MS.gene41181:CDS
TTTACCTGGTGGTGCCAATT+AGG 0.304320 4.1:+36758500 None:intergenic
CCTTCTCATCATGAACTAAT+TGG 0.327970 4.1:-36757889 MS.gene41181:CDS
GTTATGTAGATCCTCCTAAT+TGG 0.350822 4.1:-36758514 MS.gene41181:CDS
AACATTGAAGCTGCAGCATC+TGG 0.352153 4.1:-36757544 MS.gene41181:CDS
AATTCCTAACCTACCCTTCA+TGG 0.365060 4.1:-36757848 MS.gene41181:CDS
ACAACAACAACAAGATCATA+TGG 0.370266 4.1:-36757740 MS.gene41181:CDS
TCTGCTGTTGCTGGAGGTGT+TGG 0.398368 4.1:-36757664 MS.gene41181:CDS
TTTCAAATTGGTATTGGTAA+TGG 0.399190 4.1:-36757715 MS.gene41181:CDS
TCCAAGAATAGTATTGTTGT+TGG 0.406762 4.1:+36757404 None:intergenic
ATGGGGTTTCAAATTGGTAT+TGG 0.408013 4.1:-36757721 MS.gene41181:CDS
CTACGACACCCTCCACCAAC+TGG 0.417773 4.1:+36758000 None:intergenic
GGACACTTTAGCGCTGGTTC+TGG 0.424523 4.1:+36758144 None:intergenic
TGAGAAGGGATTGCACTTGA+TGG 0.431346 4.1:+36757904 None:intergenic
GCTCGATCAGCCATGGAGCC+TGG 0.444337 4.1:+36758189 None:intergenic
CCTCAAGTGGGAGGTAGTAC+TGG 0.448394 4.1:-36758240 MS.gene41181:CDS
CCAAATCATCAACAAGCAAA+TGG 0.450966 4.1:-36758297 MS.gene41181:CDS
GCTGCAGCATCTGGATTTGT+TGG 0.454209 4.1:-36757535 MS.gene41181:CDS
GATTCAAAAGTATTCAAGAA+AGG 0.460724 4.1:+36757610 None:intergenic
CTTAGAAATGTTCCAGTTGG+TGG 0.472325 4.1:-36758012 MS.gene41181:CDS
CAACAACAACAAGATCATAT+GGG 0.473282 4.1:-36757739 MS.gene41181:CDS
AATTTATCAAGAACATCTCT+TGG 0.474556 4.1:-36757445 MS.gene41181:CDS
CTCGATCAGACCAGGCTCCA+TGG 0.475078 4.1:-36758199 MS.gene41181:CDS
GAGATATAGCTTCAAACTCT+AGG 0.480948 4.1:-36757513 MS.gene41181:CDS
CCTCCCACTTGAGGTGGTAA+AGG 0.483237 4.1:+36758249 None:intergenic
TTTAGCGCTGGTTCTGGTGG+TGG 0.483860 4.1:+36758150 None:intergenic
GGTAGGTTAGGAATTGTTTG+TGG 0.484498 4.1:+36757856 None:intergenic
GAGGCCATGAAGGGTAGGTT+AGG 0.490552 4.1:+36757844 None:intergenic
AGAAATGTTCCAGTTGGTGG+AGG 0.497986 4.1:-36758009 MS.gene41181:CDS
CCAATTAGTTCATGATGAGA+AGG 0.516486 4.1:+36757889 None:intergenic
CACTTTAGCGCTGGTTCTGG+TGG 0.522746 4.1:+36758147 None:intergenic
GAAGTAGCAAAATTTAGTGT+TGG 0.523027 4.1:+36758107 None:intergenic
TCCTCCTAATTGGCACCACC+AGG 0.528426 4.1:-36758504 MS.gene41181:intron
ACTGGTGGCGGTGGTACTAT+GGG 0.530847 4.1:-36758222 MS.gene41181:CDS
GGAAACGTTAACATGGGACT+TGG 0.531022 4.1:-36757793 MS.gene41181:CDS
GAGAAGGGATTGCACTTGAT+GGG 0.532889 4.1:+36757905 None:intergenic
CAACGAGGACACTTTAGCGC+TGG 0.540252 4.1:+36758138 None:intergenic
ACCTGGTGGTGCCAATTAGG+AGG 0.541280 4.1:+36758503 None:intergenic
AATCTGAATCGTTATGTCGT+TGG 0.544772 4.1:-36757814 MS.gene41181:CDS
TCTGCTTCTGCTGTTGCTGG+AGG 0.548891 4.1:-36757670 MS.gene41181:CDS
AGATATAGCTTCAAACTCTA+GGG 0.556521 4.1:-36757512 MS.gene41181:CDS
GGAGGTAGTACTGGTGGCGG+TGG 0.560481 4.1:-36758231 MS.gene41181:CDS
ATTCTGCATCGAGGCCATGA+AGG 0.561082 4.1:+36757834 None:intergenic
CAATTAGTTCATGATGAGAA+GGG 0.573984 4.1:+36757890 None:intergenic
TGTCGTTGGAAACGTTAACA+TGG 0.575317 4.1:-36757800 MS.gene41181:CDS
TCCACCTTTACCACCTCAAG+TGG 0.577272 4.1:-36758253 MS.gene41181:CDS
ACTATGGGCTCGATCAGACC+AGG 0.580839 4.1:-36758207 MS.gene41181:CDS
TTCTGCATCGAGGCCATGAA+GGG 0.581643 4.1:+36757835 None:intergenic
CCCACTTGAGGTGGTAAAGG+TGG 0.581750 4.1:+36758252 None:intergenic
GAAATGTTCCAGTTGGTGGA+GGG 0.594932 4.1:-36758008 MS.gene41181:CDS
GCACTTAGAAATGTTCCAGT+TGG 0.600640 4.1:-36758015 MS.gene41181:CDS
AGAAGGGATTGCACTTGATG+GGG 0.604506 4.1:+36757906 None:intergenic
GTAGGCGTTATTGGACAAGA+GGG 0.605161 4.1:-36758041 MS.gene41181:CDS
TAGGGCTAATCAAGAGCCAC+CGG 0.605644 4.1:-36757494 MS.gene41181:CDS
GTCGTTGGAAACGTTAACAT+GGG 0.609381 4.1:-36757799 MS.gene41181:CDS
GTCACTTCTGCAAGACATGT+AGG 0.611130 4.1:-36758059 MS.gene41181:CDS
TGTAGGCGTTATTGGACAAG+AGG 0.616737 4.1:-36758042 MS.gene41181:CDS
GCATCGAGGCCATGAAGGGT+AGG 0.623817 4.1:+36757839 None:intergenic
AATTGCTGCAAATTACGCCA+TGG 0.629104 4.1:+36757634 None:intergenic
TAAACGAGCTCGATCAGCCA+TGG 0.633447 4.1:+36758182 None:intergenic
CATGTCTTGCAGAAGTGACG+AGG 0.635723 4.1:+36758063 None:intergenic
GTGGGAGGTAGTACTGGTGG+CGG 0.638124 4.1:-36758234 MS.gene41181:CDS
TTCTTGATAAATTTAAAGCG+CGG 0.644934 4.1:+36757455 None:intergenic
AACAACAACAAGATCATATG+GGG 0.646211 4.1:-36757738 MS.gene41181:CDS
CCACCTTTACCACCTCAAGT+GGG 0.662217 4.1:-36758252 MS.gene41181:CDS
CAAGTGGGAGGTAGTACTGG+TGG 0.664836 4.1:-36758237 MS.gene41181:CDS
GTACTACCTCCCACTTGAGG+TGG 0.666584 4.1:+36758243 None:intergenic
TAGGCGTTATTGGACAAGAG+GGG 0.675252 4.1:-36758040 MS.gene41181:CDS
AGGCGTTATTGGACAAGAGG+GGG 0.675862 4.1:-36758039 MS.gene41181:CDS
CCAGTACTACCTCCCACTTG+AGG 0.681370 4.1:+36758240 None:intergenic
CCTTTACCACCTCAAGTGGG+AGG 0.700568 4.1:-36758249 MS.gene41181:CDS
GAGGTGTTGGAGTTGAACCA+TGG 0.701694 4.1:-36757651 MS.gene41181:CDS
TTGAATAGAAGAGAAAACCA+TGG 0.707467 4.1:+36758538 None:intergenic
ACGATTCAGATTCTGCATCG+AGG 0.721837 4.1:+36757825 None:intergenic
AGAAGTGACGAGGTTGAGTG+AGG 0.724186 4.1:+36758073 None:intergenic
GTGTTGGTTGAATCGCAACG+AGG 0.733913 4.1:+36758123 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAAATTATTGTGA+TGG + chr4.1:36757542-36757561 None:intergenic 10.0%
!! ATGGAAAGAAATTAAAAAAA+GGG + chr4.1:36757566-36757585 None:intergenic 15.0%
!! ATGAAAATTAAAACTTTACC+TGG + chr4.1:36757419-36757438 None:intergenic 20.0%
!! GATGGAAAGAAATTAAAAAA+AGG + chr4.1:36757567-36757586 None:intergenic 20.0%
!!! AATAATTCATACACTTTTCA+TGG - chr4.1:36758328-36758347 MS.gene41181:intron 20.0%
!!! TTCACTTTCTTTTTTGAATT+TGG + chr4.1:36757448-36757467 None:intergenic 20.0%
! AAAATTAAAACTTTACCTGG+TGG + chr4.1:36757416-36757435 None:intergenic 25.0%
! AATTTATCAAGAACATCTCT+TGG - chr4.1:36758457-36758476 MS.gene41181:intron 25.0%
! ATATTCAAGAAGATGAAGTA+AGG + chr4.1:36757505-36757524 None:intergenic 25.0%
! TATTCTTGGAATGATTTATC+AGG - chr4.1:36758511-36758530 MS.gene41181:CDS 25.0%
!! TTCTTGATAAATTTAAAGCG+CGG + chr4.1:36758450-36758469 None:intergenic 25.0%
!! TTGAATTAGGAGATTTTGAA+CGG + chr4.1:36757952-36757971 None:intergenic 25.0%
!!! GATTCAAAAGTATTCAAGAA+AGG + chr4.1:36758295-36758314 None:intergenic 25.0%
!!! TTTCAAATTGGTATTGGTAA+TGG - chr4.1:36758187-36758206 MS.gene41181:CDS 25.0%
AACAACAACAAGATCATATG+GGG - chr4.1:36758164-36758183 MS.gene41181:CDS 30.0%
ACAACAACAACAAGATCATA+TGG - chr4.1:36758162-36758181 MS.gene41181:CDS 30.0%
ACCAACAACAATACTATTCT+TGG - chr4.1:36758497-36758516 MS.gene41181:intron 30.0%
AGATATAGCTTCAAACTCTA+GGG - chr4.1:36758390-36758409 MS.gene41181:intron 30.0%
CAACAACAACAAGATCATAT+GGG - chr4.1:36758163-36758182 MS.gene41181:CDS 30.0%
CAATTAGTTCATGATGAGAA+GGG + chr4.1:36758015-36758034 None:intergenic 30.0%
GAAGTAGCAAAATTTAGTGT+TGG + chr4.1:36757798-36757817 None:intergenic 30.0%
TCCAAGAATAGTATTGTTGT+TGG + chr4.1:36758501-36758520 None:intergenic 30.0%
! ACTTTTGAATCAAACTCTGA+TGG - chr4.1:36758304-36758323 MS.gene41181:intron 30.0%
! ATGGTTTTCTCTTCTATTCA+AGG - chr4.1:36757366-36757385 MS.gene41181:CDS 30.0%
!! TCTTGAGAGTTTGTTGAATT+AGG + chr4.1:36757965-36757984 None:intergenic 30.0%
AATCTGAATCGTTATGTCGT+TGG - chr4.1:36758088-36758107 MS.gene41181:CDS 35.0%
ATGGGGTTTCAAATTGGTAT+TGG - chr4.1:36758181-36758200 MS.gene41181:CDS 35.0%
CCAAATCATCAACAAGCAAA+TGG - chr4.1:36757605-36757624 MS.gene41181:CDS 35.0%
CCAATTAGTTCATGATGAGA+AGG + chr4.1:36758016-36758035 None:intergenic 35.0%
CCTTCTCATCATGAACTAAT+TGG - chr4.1:36758013-36758032 MS.gene41181:CDS 35.0%
GAGATATAGCTTCAAACTCT+AGG - chr4.1:36758389-36758408 MS.gene41181:intron 35.0%
GATCATATGGGGTTTCAAAT+TGG - chr4.1:36758175-36758194 MS.gene41181:CDS 35.0%
GTTATGTAGATCCTCCTAAT+TGG - chr4.1:36757388-36757407 MS.gene41181:CDS 35.0%
TTGCTGCAGGTTAAAATAGA+TGG + chr4.1:36757585-36757604 None:intergenic 35.0%
! GTTGTTGTTGATGTTGTTCT+TGG + chr4.1:36758147-36758166 None:intergenic 35.0%
!! CCATTTGCTTGTTGATGATT+TGG + chr4.1:36757608-36757627 None:intergenic 35.0%
!! CGGTTTTCTTCCATTTTAAC+CGG + chr4.1:36758430-36758449 None:intergenic 35.0%
!! TTTTCTTCCATTTTAACCGG+TGG + chr4.1:36758427-36758446 None:intergenic 35.0%
AATTCCTAACCTACCCTTCA+TGG - chr4.1:36758054-36758073 MS.gene41181:CDS 40.0%
AATTGCTGCAAATTACGCCA+TGG + chr4.1:36758271-36758290 None:intergenic 40.0%
CTTAGAAATGTTCCAGTTGG+TGG - chr4.1:36757890-36757909 MS.gene41181:CDS 40.0%
GCACTTAGAAATGTTCCAGT+TGG - chr4.1:36757887-36757906 MS.gene41181:CDS 40.0%
GGTAGGTTAGGAATTGTTTG+TGG + chr4.1:36758049-36758068 None:intergenic 40.0%
GTCGTTGGAAACGTTAACAT+GGG - chr4.1:36758103-36758122 MS.gene41181:CDS 40.0%
TGTCGTTGGAAACGTTAACA+TGG - chr4.1:36758102-36758121 MS.gene41181:CDS 40.0%
AACATTGAAGCTGCAGCATC+TGG - chr4.1:36758358-36758377 MS.gene41181:intron 45.0%
ACGATTCAGATTCTGCATCG+AGG + chr4.1:36758080-36758099 None:intergenic 45.0%
AGAAGGGATTGCACTTGATG+GGG + chr4.1:36757999-36758018 None:intergenic 45.0%
GAGAAGGGATTGCACTTGAT+GGG + chr4.1:36758000-36758019 None:intergenic 45.0%
GCAAGACATGTAGGCGTTAT+TGG - chr4.1:36757852-36757871 MS.gene41181:CDS 45.0%
GGAAACGTTAACATGGGACT+TGG - chr4.1:36758109-36758128 MS.gene41181:CDS 45.0%
GTAGGCGTTATTGGACAAGA+GGG - chr4.1:36757861-36757880 MS.gene41181:CDS 45.0%
GTCACTTCTGCAAGACATGT+AGG - chr4.1:36757843-36757862 MS.gene41181:CDS 45.0%
TAGGCGTTATTGGACAAGAG+GGG - chr4.1:36757862-36757881 MS.gene41181:CDS 45.0%
TGAGAAGGGATTGCACTTGA+TGG + chr4.1:36758001-36758020 None:intergenic 45.0%
TGTAGGCGTTATTGGACAAG+AGG - chr4.1:36757860-36757879 MS.gene41181:CDS 45.0%
! TCAAGAGCCACCGGTTAAAA+TGG - chr4.1:36758417-36758436 MS.gene41181:intron 45.0%
! TTTACCTGGTGGTGCCAATT+AGG + chr4.1:36757405-36757424 None:intergenic 45.0%
!! AGAAATGTTCCAGTTGGTGG+AGG - chr4.1:36757893-36757912 MS.gene41181:CDS 45.0%
!! GAAATGTTCCAGTTGGTGGA+GGG - chr4.1:36757894-36757913 MS.gene41181:CDS 45.0%
!! GTTGATGATTTGGTTGCTGC+AGG + chr4.1:36757598-36757617 None:intergenic 45.0%
AGAAGTGACGAGGTTGAGTG+AGG + chr4.1:36757832-36757851 None:intergenic 50.0%
AGGCGTTATTGGACAAGAGG+GGG - chr4.1:36757863-36757882 MS.gene41181:CDS 50.0%
ATTCTGCATCGAGGCCATGA+AGG + chr4.1:36758071-36758090 None:intergenic 50.0%
CATGTCTTGCAGAAGTGACG+AGG + chr4.1:36757842-36757861 None:intergenic 50.0%
CCACCTTTACCACCTCAAGT+GGG - chr4.1:36757650-36757669 MS.gene41181:CDS 50.0%
GCTGCAGCATCTGGATTTGT+TGG - chr4.1:36758367-36758386 MS.gene41181:intron 50.0%
GTTTCTGCTTCTGCTGTTGC+TGG - chr4.1:36758229-36758248 MS.gene41181:CDS 50.0%
TAAACGAGCTCGATCAGCCA+TGG + chr4.1:36757723-36757742 None:intergenic 50.0%
TAGGGCTAATCAAGAGCCAC+CGG - chr4.1:36758408-36758427 MS.gene41181:intron 50.0%
TCCACCTTTACCACCTCAAG+TGG - chr4.1:36757649-36757668 MS.gene41181:CDS 50.0%
TTCTGCATCGAGGCCATGAA+GGG + chr4.1:36758070-36758089 None:intergenic 50.0%
!! GAGGTGTTGGAGTTGAACCA+TGG - chr4.1:36758251-36758270 MS.gene41181:CDS 50.0%
!! GTGTTGGTTGAATCGCAACG+AGG + chr4.1:36757782-36757801 None:intergenic 50.0%
ACTATGGGCTCGATCAGACC+AGG - chr4.1:36757695-36757714 MS.gene41181:CDS 55.0%
CAACGAGGACACTTTAGCGC+TGG + chr4.1:36757767-36757786 None:intergenic 55.0%
CCAGTACTACCTCCCACTTG+AGG + chr4.1:36757665-36757684 None:intergenic 55.0%
CCCACTTGAGGTGGTAAAGG+TGG + chr4.1:36757653-36757672 None:intergenic 55.0%
CCTCAAGTGGGAGGTAGTAC+TGG - chr4.1:36757662-36757681 MS.gene41181:CDS 55.0%
CCTCCCACTTGAGGTGGTAA+AGG + chr4.1:36757656-36757675 None:intergenic 55.0%
CCTTTACCACCTCAAGTGGG+AGG - chr4.1:36757653-36757672 MS.gene41181:CDS 55.0%
GAGGCCATGAAGGGTAGGTT+AGG + chr4.1:36758061-36758080 None:intergenic 55.0%
GTACTACCTCCCACTTGAGG+TGG + chr4.1:36757662-36757681 None:intergenic 55.0%
TCCTCCTAATTGGCACCACC+AGG - chr4.1:36757398-36757417 MS.gene41181:CDS 55.0%
TCTGCTTCTGCTGTTGCTGG+AGG - chr4.1:36758232-36758251 MS.gene41181:CDS 55.0%
! ACCTGGTGGTGCCAATTAGG+AGG + chr4.1:36757402-36757421 None:intergenic 55.0%
! CAAGTGGGAGGTAGTACTGG+TGG - chr4.1:36757665-36757684 MS.gene41181:CDS 55.0%
! TCTGCTGTTGCTGGAGGTGT+TGG - chr4.1:36758238-36758257 MS.gene41181:CDS 55.0%
!! ACTGGTGGCGGTGGTACTAT+GGG - chr4.1:36757680-36757699 MS.gene41181:CDS 55.0%
!! CACTTTAGCGCTGGTTCTGG+TGG + chr4.1:36757758-36757777 None:intergenic 55.0%
!! GGACACTTTAGCGCTGGTTC+TGG + chr4.1:36757761-36757780 None:intergenic 55.0%
!! TACTGGTGGCGGTGGTACTA+TGG - chr4.1:36757679-36757698 MS.gene41181:CDS 55.0%
!! TTTAGCGCTGGTTCTGGTGG+TGG + chr4.1:36757755-36757774 None:intergenic 55.0%
CTACGACACCCTCCACCAAC+TGG + chr4.1:36757905-36757924 None:intergenic 60.0%
CTCGATCAGACCAGGCTCCA+TGG - chr4.1:36757703-36757722 MS.gene41181:CDS 60.0%
GCATCGAGGCCATGAAGGGT+AGG + chr4.1:36758066-36758085 None:intergenic 60.0%
!! GTGGGAGGTAGTACTGGTGG+CGG - chr4.1:36757668-36757687 MS.gene41181:CDS 60.0%
GCTCGATCAGCCATGGAGCC+TGG + chr4.1:36757716-36757735 None:intergenic 65.0%
!! GGAGGTAGTACTGGTGGCGG+TGG - chr4.1:36757671-36757690 MS.gene41181:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 36757366 36758558 36757366 ID=MS.gene41181
chr4.1 mRNA 36757366 36758558 36757366 ID=MS.gene41181.t1;Parent=MS.gene41181
chr4.1 exon 36758505 36758558 36758505 ID=MS.gene41181.t1.exon1;Parent=MS.gene41181.t1
chr4.1 CDS 36758505 36758558 36758505 ID=cds.MS.gene41181.t1;Parent=MS.gene41181.t1
chr4.1 exon 36757366 36758322 36757366 ID=MS.gene41181.t1.exon2;Parent=MS.gene41181.t1
chr4.1 CDS 36757366 36758322 36757366 ID=cds.MS.gene41181.t1;Parent=MS.gene41181.t1
Gene Sequence

>MS.gene41181

ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGGTAAAGTTTTAATTTTCATCAAATTCCAAATTCAAAAAAGAAAGTGAAAAAAAAAACTTCAAAAAGATGAATCATTCATATTCCTTACTTCATCTTCTTGAATATACTAATTTTTTTTTCCATCACAATAATTTTTTAAAATTCCCTTTTTTTAATTTCTTTCCATCTATTTTAACCTGCAGCAACCAAATCATCAACAAGCAAATGGAAGCAATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTGGTGGCGGTGGTACTATGGGCTCGATCAGACCAGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCAGAACCAGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAACTCTCAAGAAAAACAAACTTCCCCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGTTACCACAAACAATTCCTAACCTACCCTTCATGGCCTCGATGCAGAATCTGAATCGTTATGTCGTTGGAAACGTTAACATGGGACTTGGTTTGCGTGAGATCCAAGAACAACATCAACAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTGCTGTTGCTGGAGGTGTTGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTTGAATCAAACTCTGATGGAAATAATTCATACACTTTTCATGGAGAAAGTAACATTGAAGCTGCAGCATCTGGATTTGTTGGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAACCGCGCTTTAAATTTATCAAGAACATCTCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA
Protein sequence

>MS.gene41181.t1

MVFSSIQGYVDPPNWHHQQPNHQQANGSNNTQLLPPLPPQVGGSTGGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSPSSAIPSHHELIGHQLPQTIPNLPFMASMQNLNRYVVGNVNMGLGLREIQEQHQQQQQQDHMGFQIGIGNGNSTSVSVSASAVAGGVGVEPWRNLQQFPFLNTFESNSDGNNSYTFHGESNIEAAASGFVGDIASNSRANQEPPVKMEENRALNLSRTSLGVSEHNNQQQYYSWNDLSGSSTTHLL