Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41218.t1 | KEH41356.1 | 89.3 | 391 | 40 | 2 | 1 | 390 | 1 | 390 | 4.60E-207 | 730.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41218.t1 | Q3EBZ2 | 34.0 | 415 | 210 | 13 | 6 | 383 | 3 | 390 | 3.3e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41218.t1 | A0A072VIF8 | 89.3 | 391 | 40 | 2 | 1 | 390 | 1 | 390 | 3.3e-207 | 730.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene41218 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene41218 | 0.804485 | 2.11E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene41218 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene41218 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene060716 | MS.gene41218 | 0.808737 | 2.67E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41218.t1 | MTR_1g049170 | 89.258 | 391 | 40 | 2 | 1 | 390 | 1 | 390 | 0.0 | 725 |
| MS.gene41218.t1 | MTR_3g092000 | 59.804 | 408 | 138 | 11 | 2 | 389 | 3 | 404 | 5.29e-156 | 446 |
| MS.gene41218.t1 | MTR_3g091990 | 53.652 | 397 | 153 | 10 | 5 | 385 | 6 | 387 | 1.75e-127 | 373 |
| MS.gene41218.t1 | MTR_3g029650 | 49.380 | 403 | 138 | 9 | 5 | 385 | 4 | 362 | 5.77e-108 | 334 |
| MS.gene41218.t1 | MTR_3g029650 | 39.019 | 428 | 169 | 15 | 5 | 386 | 371 | 752 | 5.01e-71 | 237 |
| MS.gene41218.t1 | MTR_2g047180 | 47.537 | 406 | 151 | 14 | 3 | 385 | 1 | 367 | 3.84e-106 | 317 |
| MS.gene41218.t1 | MTR_3g030080 | 45.012 | 411 | 162 | 15 | 1 | 385 | 1 | 373 | 4.57e-97 | 294 |
| MS.gene41218.t1 | MTR_6g018360 | 44.802 | 404 | 173 | 12 | 4 | 383 | 3 | 380 | 2.55e-93 | 286 |
| MS.gene41218.t1 | MTR_1g016570 | 43.734 | 391 | 161 | 11 | 5 | 385 | 20 | 361 | 1.87e-90 | 277 |
| MS.gene41218.t1 | MTR_6g018315 | 44.473 | 389 | 170 | 12 | 17 | 383 | 1 | 365 | 4.38e-88 | 272 |
| MS.gene41218.t1 | MTR_3g030360 | 43.500 | 400 | 154 | 14 | 6 | 385 | 5 | 352 | 9.80e-88 | 270 |
| MS.gene41218.t1 | MTR_6g018390 | 44.691 | 405 | 159 | 14 | 3 | 383 | 2 | 365 | 1.65e-87 | 270 |
| MS.gene41218.t1 | MTR_6g018400 | 44.975 | 398 | 169 | 15 | 4 | 383 | 3 | 368 | 1.15e-86 | 267 |
| MS.gene41218.t1 | MTR_3g030440 | 44.750 | 400 | 162 | 14 | 1 | 385 | 1 | 356 | 1.55e-86 | 266 |
| MS.gene41218.t1 | MTR_3g030480 | 44.949 | 396 | 159 | 14 | 5 | 385 | 4 | 355 | 1.97e-86 | 266 |
| MS.gene41218.t1 | MTR_3g030380 | 43.073 | 397 | 168 | 11 | 5 | 385 | 4 | 358 | 3.55e-86 | 266 |
| MS.gene41218.t1 | MTR_3g030050 | 39.492 | 433 | 181 | 10 | 5 | 383 | 15 | 420 | 3.04e-83 | 260 |
| MS.gene41218.t1 | MTR_3g029640 | 42.327 | 404 | 177 | 14 | 3 | 387 | 1 | 367 | 3.40e-80 | 251 |
| MS.gene41218.t1 | MTR_3g029670 | 43.062 | 418 | 171 | 15 | 4 | 386 | 3 | 388 | 1.81e-79 | 249 |
| MS.gene41218.t1 | MTR_1g026850 | 40.302 | 397 | 191 | 12 | 1 | 384 | 1 | 364 | 1.18e-77 | 244 |
| MS.gene41218.t1 | MTR_3g029750 | 42.584 | 418 | 173 | 16 | 4 | 386 | 3 | 388 | 1.83e-77 | 244 |
| MS.gene41218.t1 | MTR_3g029620 | 40.196 | 408 | 184 | 13 | 5 | 386 | 2 | 375 | 1.66e-74 | 236 |
| MS.gene41218.t1 | MTR_1g007260 | 40.452 | 398 | 183 | 16 | 3 | 379 | 19 | 383 | 5.08e-73 | 233 |
| MS.gene41218.t1 | MTR_3g030560 | 39.614 | 414 | 187 | 14 | 3 | 389 | 1 | 378 | 1.90e-72 | 231 |
| MS.gene41218.t1 | MTR_6g027040 | 39.803 | 407 | 184 | 14 | 4 | 383 | 3 | 375 | 1.94e-72 | 231 |
| MS.gene41218.t1 | MTR_3g058460 | 37.845 | 399 | 195 | 11 | 3 | 383 | 12 | 375 | 3.40e-72 | 230 |
| MS.gene41218.t1 | MTR_3g029920 | 39.623 | 424 | 178 | 21 | 1 | 389 | 4 | 384 | 3.09e-71 | 228 |
| MS.gene41218.t1 | MTR_6g027100 | 39.803 | 407 | 184 | 13 | 4 | 383 | 3 | 375 | 3.55e-71 | 229 |
| MS.gene41218.t1 | MTR_3g029840 | 39.950 | 398 | 179 | 13 | 4 | 385 | 3 | 356 | 3.93e-70 | 224 |
| MS.gene41218.t1 | MTR_3g029800 | 38.916 | 406 | 180 | 11 | 3 | 387 | 1 | 359 | 1.45e-69 | 223 |
| MS.gene41218.t1 | MTR_3g030355 | 37.731 | 432 | 187 | 14 | 1 | 386 | 1 | 396 | 5.66e-68 | 220 |
| MS.gene41218.t1 | MTR_3g029950 | 39.952 | 413 | 170 | 17 | 4 | 385 | 3 | 368 | 8.43e-65 | 211 |
| MS.gene41218.t1 | MTR_3g047980 | 38.462 | 390 | 168 | 13 | 6 | 383 | 30 | 359 | 4.30e-59 | 196 |
| MS.gene41218.t1 | MTR_3g029900 | 39.823 | 339 | 161 | 11 | 46 | 383 | 161 | 457 | 9.99e-58 | 196 |
| MS.gene41218.t1 | MTR_3g029870 | 38.710 | 403 | 156 | 17 | 4 | 385 | 3 | 335 | 1.24e-56 | 189 |
| MS.gene41218.t1 | MTR_1g016540 | 56.044 | 182 | 66 | 6 | 216 | 385 | 1 | 180 | 8.31e-56 | 182 |
| MS.gene41218.t1 | MTR_7g005990 | 37.470 | 411 | 180 | 16 | 3 | 387 | 1 | 360 | 8.41e-56 | 187 |
| MS.gene41218.t1 | MTR_3g037710 | 42.254 | 213 | 109 | 2 | 185 | 383 | 50 | 262 | 1.15e-48 | 166 |
| MS.gene41218.t1 | MTR_1g007250 | 50.000 | 166 | 72 | 6 | 216 | 376 | 1 | 160 | 2.99e-39 | 138 |
| MS.gene41218.t1 | MTR_3g029820 | 46.111 | 180 | 75 | 8 | 220 | 389 | 165 | 332 | 5.74e-39 | 142 |
| MS.gene41218.t1 | MTR_3g029820 | 36.774 | 155 | 75 | 7 | 1 | 134 | 4 | 156 | 4.74e-15 | 75.9 |
| MS.gene41218.t1 | MTR_5g078450 | 53.623 | 138 | 42 | 3 | 250 | 385 | 2 | 119 | 1.84e-37 | 132 |
| MS.gene41218.t1 | MTR_5g042230 | 46.023 | 176 | 90 | 4 | 202 | 372 | 13 | 188 | 1.26e-36 | 132 |
| MS.gene41218.t1 | MTR_8g035995 | 68.132 | 91 | 28 | 1 | 226 | 315 | 2 | 92 | 7.20e-33 | 120 |
| MS.gene41218.t1 | MTR_6g018370 | 39.560 | 182 | 103 | 4 | 150 | 324 | 78 | 259 | 1.10e-32 | 124 |
| MS.gene41218.t1 | MTR_6g018370 | 48.276 | 87 | 28 | 3 | 3 | 72 | 1 | 87 | 5.81e-11 | 62.8 |
| MS.gene41218.t1 | MTR_4g022880 | 48.120 | 133 | 62 | 3 | 258 | 383 | 39 | 171 | 1.50e-31 | 118 |
| MS.gene41218.t1 | MTR_1g007220 | 38.144 | 194 | 88 | 5 | 186 | 376 | 3 | 167 | 5.32e-31 | 116 |
| MS.gene41218.t1 | MTR_8g074610 | 25.647 | 425 | 225 | 15 | 1 | 383 | 20 | 395 | 1.12e-27 | 113 |
| MS.gene41218.t1 | MTR_8g074640 | 28.571 | 378 | 195 | 15 | 1 | 340 | 1 | 341 | 4.69e-24 | 102 |
| MS.gene41218.t1 | MTR_6g009100 | 40.000 | 130 | 60 | 4 | 3 | 128 | 1 | 116 | 3.59e-17 | 77.4 |
| MS.gene41218.t1 | MTR_1g007200 | 46.154 | 104 | 42 | 6 | 270 | 369 | 1 | 94 | 5.62e-16 | 74.3 |
| MS.gene41218.t1 | MTR_6g092570 | 23.796 | 353 | 210 | 13 | 4 | 338 | 6 | 317 | 6.70e-14 | 72.8 |
| MS.gene41218.t1 | MTR_1g007230 | 65.957 | 47 | 15 | 1 | 1 | 46 | 3 | 49 | 1.10e-13 | 66.6 |
| MS.gene41218.t1 | MTR_3g029850 | 39.744 | 78 | 44 | 2 | 306 | 383 | 42 | 116 | 1.22e-12 | 64.7 |
| MS.gene41218.t1 | MTR_7g012990 | 46.154 | 78 | 38 | 3 | 206 | 281 | 78 | 153 | 8.94e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41218.t1 | AT2G17030 | 34.135 | 416 | 210 | 14 | 5 | 383 | 2 | 390 | 1.08e-51 | 178 |
| MS.gene41218.t1 | AT2G17036 | 31.961 | 413 | 215 | 18 | 6 | 383 | 2 | 383 | 1.72e-44 | 159 |
| MS.gene41218.t1 | AT2G17036 | 31.961 | 413 | 215 | 18 | 6 | 383 | 3 | 384 | 1.78e-44 | 159 |
| MS.gene41218.t1 | AT5G24040 | 24.566 | 403 | 243 | 19 | 7 | 384 | 4 | 370 | 3.33e-20 | 91.7 |
| MS.gene41218.t1 | AT5G60060 | 25.547 | 411 | 223 | 19 | 3 | 374 | 7 | 373 | 3.03e-18 | 85.9 |
Find 86 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTATGACTCTCATTGTTT+TGG | 0.157074 | 1.4:-36050408 | MS.gene41218:CDS |
| CGTCAGGATCCGTCACCTTT+AGG | 0.225862 | 1.4:-36050747 | MS.gene41218:CDS |
| TTTAGGATCCGACGTTGTTA+TGG | 0.280806 | 1.4:-36050850 | MS.gene41218:CDS |
| AAATTCTCTGTCGTTCGTTT+AGG | 0.316216 | 1.4:-36050867 | MS.gene41218:CDS |
| CTGACTACTTCAACTTCTTC+TGG | 0.327644 | 1.4:-36050122 | MS.gene41218:CDS |
| GTCAGGATCCGTCACCTTTA+GGG | 0.329015 | 1.4:-36050746 | MS.gene41218:CDS |
| TGTCGAGTCGTGAAGATATC+AGG | 0.337130 | 1.4:+36051183 | None:intergenic |
| TTGAAGGGTAAATTGTGATT+TGG | 0.338486 | 1.4:+36051104 | None:intergenic |
| ACAATACTGGATGACCGTTT+TGG | 0.352729 | 1.4:+36050646 | None:intergenic |
| GTTGTGTTTGGAGAGGTAAC+AGG | 0.362059 | 1.4:+36051052 | None:intergenic |
| TTAGGATCCGACGTTGTTAT+GGG | 0.388118 | 1.4:-36050849 | MS.gene41218:CDS |
| GATGAGGAAGATGTTGTGTT+TGG | 0.395385 | 1.4:+36051040 | None:intergenic |
| GTCGAAGAGCTTAAGGGATA+AGG | 0.404239 | 1.4:-36050319 | MS.gene41218:CDS |
| AATGGAAGTCGAAGAGCTTA+AGG | 0.422589 | 1.4:-36050326 | MS.gene41218:CDS |
| GGACGTGAGGGAAATGATAA+GGG | 0.422973 | 1.4:+36050901 | None:intergenic |
| ATTGGTCGGACAGTTGCGTT+TGG | 0.426145 | 1.4:-36050525 | MS.gene41218:CDS |
| TCGGACAGTTGCGTTTGGAC+TGG | 0.429555 | 1.4:-36050520 | MS.gene41218:CDS |
| CCACATCGCATGTTATCAAA+AGG | 0.430095 | 1.4:+36050198 | None:intergenic |
| CAGAAGAAGTTGAAGTAGTC+AGG | 0.435981 | 1.4:+36050123 | None:intergenic |
| TGATCGAAAACGAATGATAT+CGG | 0.445690 | 1.4:+36051154 | None:intergenic |
| CAATGGCCATGGCGGCAGAC+TGG | 0.446285 | 1.4:-36051232 | MS.gene41218:CDS |
| TCGCTGCAGTGAAACAATAC+TGG | 0.446478 | 1.4:+36050633 | None:intergenic |
| AACAACAAACCCTCCGTCCT+TGG | 0.446527 | 1.4:-36050998 | MS.gene41218:CDS |
| TCAGTTGAAGTTACAGCGTC+AGG | 0.452632 | 1.4:-36050763 | MS.gene41218:CDS |
| AGGACGTGAGGGAAATGATA+AGG | 0.455992 | 1.4:+36050900 | None:intergenic |
| GGATTATAGTGTCGAGTTAG+TGG | 0.460930 | 1.4:-36050499 | MS.gene41218:CDS |
| CAACTTCTTCTGGCCACCTC+CGG | 0.471703 | 1.4:-36050112 | MS.gene41218:CDS |
| TAAGCTTAATGAGAAGAAGA+AGG | 0.474353 | 1.4:-36050349 | MS.gene41218:CDS |
| GTGAAAATGTGGTAACTTGA+AGG | 0.484956 | 1.4:+36051088 | None:intergenic |
| AGAAAATACGTTGACATGCA+TGG | 0.487490 | 1.4:+36050591 | None:intergenic |
| TTAATGAGAAGAAGAAGGAA+TGG | 0.498438 | 1.4:-36050344 | MS.gene41218:CDS |
| GTTTGTTGTTGTTCTTGTTG+TGG | 0.504219 | 1.4:+36051011 | None:intergenic |
| ATGGAAGTCGAAGAGCTTAA+GGG | 0.506592 | 1.4:-36050325 | MS.gene41218:CDS |
| TTTCCCATACCATACCCTAA+AGG | 0.508776 | 1.4:+36050732 | None:intergenic |
| TCGAGAATCCACTCCGGAGG+TGG | 0.511300 | 1.4:+36050099 | None:intergenic |
| AAAGACGACACAATTCCCTT+TGG | 0.513520 | 1.4:+36050239 | None:intergenic |
| GTCACCTTTAGGGTATGGTA+TGG | 0.514754 | 1.4:-36050736 | MS.gene41218:CDS |
| TTTGGGTTCCCTGTCAAAGA+GGG | 0.520426 | 1.4:-36050390 | MS.gene41218:CDS |
| TTCACTGCAGCGAACAGCGT+TGG | 0.521513 | 1.4:-36050623 | MS.gene41218:CDS |
| CAGATTTGTCTATTGCCAAA+GGG | 0.522486 | 1.4:-36050254 | MS.gene41218:CDS |
| TTCGATCAGTTTGTTCAACA+TGG | 0.526540 | 1.4:-36051139 | MS.gene41218:CDS |
| GAAAATACGTTGACATGCAT+GGG | 0.526952 | 1.4:+36050592 | None:intergenic |
| TGTTGTTGTTCTTGTTGTGG+TGG | 0.530591 | 1.4:+36051014 | None:intergenic |
| GTAGTTGCTATTATGCAAGA+TGG | 0.533601 | 1.4:-36050705 | MS.gene41218:CDS |
| AGTCAGGATAATCAGACAAA+GGG | 0.533962 | 1.4:+36050139 | None:intergenic |
| TCAGATTTGTCTATTGCCAA+AGG | 0.535639 | 1.4:-36050255 | MS.gene41218:CDS |
| GATCCGTCACCTTTAGGGTA+TGG | 0.539794 | 1.4:-36050741 | MS.gene41218:CDS |
| CTCGGGACATTGAACCAAAA+CGG | 0.542934 | 1.4:-36050660 | MS.gene41218:CDS |
| TGTAGACCAGTCTGCCGCCA+TGG | 0.542982 | 1.4:+36051226 | None:intergenic |
| ACTCACCTTCACACTCTACA+AGG | 0.545195 | 1.4:+36050445 | None:intergenic |
| AGTCAAGTGATCGGAGTGGA+TGG | 0.546510 | 1.4:+36050931 | None:intergenic |
| CACATCGCATGTTATCAAAA+GGG | 0.547013 | 1.4:+36050199 | None:intergenic |
| CTTGTTGTGGTGGTTTGATG+AGG | 0.547707 | 1.4:+36051024 | None:intergenic |
| AATCAGACAAAGGGATAAGC+CGG | 0.556570 | 1.4:+36050148 | None:intergenic |
| ATGCGGTTAATAAAATTGGT+CGG | 0.573013 | 1.4:-36050539 | MS.gene41218:CDS |
| CAAAGAGGGTCTAAAACTGA+AGG | 0.576112 | 1.4:-36050376 | MS.gene41218:CDS |
| TAGTTGCTATTATGCAAGAT+GGG | 0.583418 | 1.4:-36050704 | MS.gene41218:CDS |
| AAGAGAACCATCAATGGCCA+TGG | 0.584076 | 1.4:-36051243 | None:intergenic |
| TCTTCTGGCCACCTCCGGAG+TGG | 0.587712 | 1.4:-36050107 | MS.gene41218:CDS |
| TCTGATCAACCAAGGACGGA+GGG | 0.595739 | 1.4:+36050989 | None:intergenic |
| TAGTCAGGATAATCAGACAA+AGG | 0.606271 | 1.4:+36050138 | None:intergenic |
| TTAGTGGCTGAACATGTGAA+TGG | 0.607438 | 1.4:-36050483 | MS.gene41218:CDS |
| TGAAAATGTGGTAACTTGAA+GGG | 0.610153 | 1.4:+36051089 | None:intergenic |
| TTCGCAATTCTGATCAACCA+AGG | 0.613036 | 1.4:+36050981 | None:intergenic |
| ATATCTGCGCGTTTAAAGAG+CGG | 0.614988 | 1.4:-36050566 | MS.gene41218:CDS |
| CAATTCTGATCAACCAAGGA+CGG | 0.615209 | 1.4:+36050985 | None:intergenic |
| TGAGGGAAATGATAAGGGGA+AGG | 0.617197 | 1.4:+36050906 | None:intergenic |
| AGTGATGAAGTGTGAAAATG+TGG | 0.617339 | 1.4:+36051077 | None:intergenic |
| TCACCTTTAGGGTATGGTAT+GGG | 0.618147 | 1.4:-36050735 | MS.gene41218:CDS |
| TGGCTGAACATGTGAATGGA+GGG | 0.622410 | 1.4:-36050479 | MS.gene41218:CDS |
| TGAAGGTGAGTTGTTGCTAG+TGG | 0.626191 | 1.4:-36050433 | MS.gene41218:CDS |
| TTCTGATCAACCAAGGACGG+AGG | 0.628685 | 1.4:+36050988 | None:intergenic |
| GACGTGAGGGAAATGATAAG+GGG | 0.640620 | 1.4:+36050902 | None:intergenic |
| AGAACCATCAATGGCCATGG+CGG | 0.644114 | 1.4:-36051240 | None:intergenic |
| GGGAAGGCGAGTCAAGTGAT+CGG | 0.644482 | 1.4:+36050922 | None:intergenic |
| ATACCATACCCTAAAGGTGA+CGG | 0.654434 | 1.4:+36050738 | None:intergenic |
| GGAAGATGTTGTGTTTGGAG+AGG | 0.656900 | 1.4:+36051045 | None:intergenic |
| TCAGGATGAGAAGATCCTTG+TGG | 0.658021 | 1.4:+36051201 | None:intergenic |
| GTGGCTGAACATGTGAATGG+AGG | 0.661757 | 1.4:-36050480 | MS.gene41218:CDS |
| ATTTCGAGAATCCACTCCGG+AGG | 0.662099 | 1.4:+36050096 | None:intergenic |
| AAATTCCTTGTAGAGTGTGA+AGG | 0.674175 | 1.4:-36050450 | MS.gene41218:CDS |
| TGCATTTCGAGAATCCACTC+CGG | 0.678133 | 1.4:+36050093 | None:intergenic |
| ATATCTTCCCATAACAACGT+CGG | 0.689178 | 1.4:+36050842 | None:intergenic |
| GGCTGAACATGTGAATGGAG+GGG | 0.690996 | 1.4:-36050478 | MS.gene41218:CDS |
| GGCGAGTCAAGTGATCGGAG+TGG | 0.693934 | 1.4:+36050927 | None:intergenic |
| AGACTGGTCTACACTCCACA+AGG | 0.697042 | 1.4:-36051216 | MS.gene41218:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGCGGTTAATAAAAT+TGG | - | chr1.4:36050767-36050786 | MS.gene41218:CDS | 20.0% |
| AACAAAAAAACTGTTGCTCT+CGG | - | chr1.4:36050632-36050651 | MS.gene41218:CDS | 30.0% | |
| ATGCGGTTAATAAAATTGGT+CGG | - | chr1.4:36050771-36050790 | MS.gene41218:CDS | 30.0% | |
| TAAGCTTAATGAGAAGAAGA+AGG | - | chr1.4:36050961-36050980 | MS.gene41218:CDS | 30.0% | |
| TGAAAATGTGGTAACTTGAA+GGG | + | chr1.4:36050224-36050243 | None:intergenic | 30.0% | |
| TGATCGAAAACGAATGATAT+CGG | + | chr1.4:36050159-36050178 | None:intergenic | 30.0% | |
| TTAATGAGAAGAAGAAGGAA+TGG | - | chr1.4:36050966-36050985 | MS.gene41218:CDS | 30.0% | |
| TTGAAGGGTAAATTGTGATT+TGG | + | chr1.4:36050209-36050228 | None:intergenic | 30.0% | |
| ! | ATCTATGACTCTCATTGTTT+TGG | - | chr1.4:36050902-36050921 | MS.gene41218:CDS | 30.0% |
| ! | TAGTTGCTATTATGCAAGAT+GGG | - | chr1.4:36050606-36050625 | MS.gene41218:CDS | 30.0% |
| ! | TCTATGACTCTCATTGTTTT+GGG | - | chr1.4:36050903-36050922 | MS.gene41218:CDS | 30.0% |
| !!! | AAGATCAGACCGTTTTAAAA+CGG | - | chr1.4:36050495-36050514 | MS.gene41218:CDS | 30.0% |
| !!! | TTCCTTAGACCGTTTTAAAA+CGG | + | chr1.4:36050507-36050526 | None:intergenic | 30.0% |
| AAATTCCTTGTAGAGTGTGA+AGG | - | chr1.4:36050860-36050879 | MS.gene41218:CDS | 35.0% | |
| AAATTCTCTGTCGTTCGTTT+AGG | - | chr1.4:36050443-36050462 | MS.gene41218:CDS | 35.0% | |
| ACAAAAAAACTGTTGCTCTC+GGG | - | chr1.4:36050633-36050652 | MS.gene41218:CDS | 35.0% | |
| AGAAAATACGTTGACATGCA+TGG | + | chr1.4:36050722-36050741 | None:intergenic | 35.0% | |
| AGTCAGGATAATCAGACAAA+GGG | + | chr1.4:36051174-36051193 | None:intergenic | 35.0% | |
| AGTGATGAAGTGTGAAAATG+TGG | + | chr1.4:36050236-36050255 | None:intergenic | 35.0% | |
| ATATCTTCCCATAACAACGT+CGG | + | chr1.4:36050471-36050490 | None:intergenic | 35.0% | |
| CACATCGCATGTTATCAAAA+GGG | + | chr1.4:36051114-36051133 | None:intergenic | 35.0% | |
| CAGATTTGTCTATTGCCAAA+GGG | - | chr1.4:36051056-36051075 | MS.gene41218:CDS | 35.0% | |
| GAAAATACGTTGACATGCAT+GGG | + | chr1.4:36050721-36050740 | None:intergenic | 35.0% | |
| GTGAAAATGTGGTAACTTGA+AGG | + | chr1.4:36050225-36050244 | None:intergenic | 35.0% | |
| TAGTCAGGATAATCAGACAA+AGG | + | chr1.4:36051175-36051194 | None:intergenic | 35.0% | |
| TCAGATTTGTCTATTGCCAA+AGG | - | chr1.4:36051055-36051074 | MS.gene41218:CDS | 35.0% | |
| ! | GTAGTTGCTATTATGCAAGA+TGG | - | chr1.4:36050605-36050624 | MS.gene41218:CDS | 35.0% |
| ! | TGGGATGTGTGTTTTTCATT+TGG | - | chr1.4:36051132-36051151 | MS.gene41218:CDS | 35.0% |
| ! | TTCGATCAGTTTGTTCAACA+TGG | - | chr1.4:36050171-36050190 | MS.gene41218:CDS | 35.0% |
| ! | TTTTTCATTTGGACGAACAC+CGG | - | chr1.4:36051143-36051162 | MS.gene41218:CDS | 35.0% |
| !! | CTTTTGATAACATGCGATGT+GGG | - | chr1.4:36051113-36051132 | MS.gene41218:CDS | 35.0% |
| !! | GTTTAAAGAGCGGTTTTATG+CGG | - | chr1.4:36050754-36050773 | MS.gene41218:CDS | 35.0% |
| !! | GTTTGTTGTTGTTCTTGTTG+TGG | + | chr1.4:36050302-36050321 | None:intergenic | 35.0% |
| !!! | AAGGGATAAGGTTTTGTTCT+TGG | - | chr1.4:36051003-36051022 | MS.gene41218:CDS | 35.0% |
| !!! | AAGGTTTTGTTCTTGGGAAA+TGG | - | chr1.4:36051010-36051029 | MS.gene41218:CDS | 35.0% |
| !!! | AGGGATAAGGTTTTGTTCTT+GGG | - | chr1.4:36051004-36051023 | MS.gene41218:CDS | 35.0% |
| !!! | CAGAGAATTTTTTCAAGTCG+AGG | + | chr1.4:36050433-36050452 | None:intergenic | 35.0% |
| AAAGACGACACAATTCCCTT+TGG | + | chr1.4:36051074-36051093 | None:intergenic | 40.0% | |
| AATCAGACAAAGGGATAAGC+CGG | + | chr1.4:36051165-36051184 | None:intergenic | 40.0% | |
| AATGGAAGTCGAAGAGCTTA+AGG | - | chr1.4:36050984-36051003 | MS.gene41218:CDS | 40.0% | |
| AGGGTATGGTATGGGAAAAA+AGG | - | chr1.4:36050583-36050602 | MS.gene41218:CDS | 40.0% | |
| ATACCATACCCTAAAGGTGA+CGG | + | chr1.4:36050575-36050594 | None:intergenic | 40.0% | |
| ATATCTGCGCGTTTAAAGAG+CGG | - | chr1.4:36050744-36050763 | MS.gene41218:CDS | 40.0% | |
| ATGGAAGTCGAAGAGCTTAA+GGG | - | chr1.4:36050985-36051004 | MS.gene41218:CDS | 40.0% | |
| ATTGCGAAAAACTCATGCTG+TGG | - | chr1.4:36050344-36050363 | MS.gene41218:CDS | 40.0% | |
| CAATTCTGATCAACCAAGGA+CGG | + | chr1.4:36050328-36050347 | None:intergenic | 40.0% | |
| CAGAAGAAGTTGAAGTAGTC+AGG | + | chr1.4:36051190-36051209 | None:intergenic | 40.0% | |
| CCACATCGCATGTTATCAAA+AGG | + | chr1.4:36051115-36051134 | None:intergenic | 40.0% | |
| CTGACTACTTCAACTTCTTC+TGG | - | chr1.4:36051188-36051207 | MS.gene41218:CDS | 40.0% | |
| GATGAGGAAGATGTTGTGTT+TGG | + | chr1.4:36050273-36050292 | None:intergenic | 40.0% | |
| TTAGGATCCGACGTTGTTAT+GGG | - | chr1.4:36050461-36050480 | MS.gene41218:CDS | 40.0% | |
| TTAGTGGCTGAACATGTGAA+TGG | - | chr1.4:36050827-36050846 | MS.gene41218:CDS | 40.0% | |
| TTCGCAATTCTGATCAACCA+AGG | + | chr1.4:36050332-36050351 | None:intergenic | 40.0% | |
| TTTCCCATACCATACCCTAA+AGG | + | chr1.4:36050581-36050600 | None:intergenic | 40.0% | |
| ! | ACAATACTGGATGACCGTTT+TGG | + | chr1.4:36050667-36050686 | None:intergenic | 40.0% |
| ! | CAAAGAGGGTCTAAAACTGA+AGG | - | chr1.4:36050934-36050953 | MS.gene41218:CDS | 40.0% |
| ! | GGATTATAGTGTCGAGTTAG+TGG | - | chr1.4:36050811-36050830 | MS.gene41218:CDS | 40.0% |
| ! | TGTTGTTGTTCTTGTTGTGG+TGG | + | chr1.4:36050299-36050318 | None:intergenic | 40.0% |
| ! | TTTAGGATCCGACGTTGTTA+TGG | - | chr1.4:36050460-36050479 | MS.gene41218:CDS | 40.0% |
| !! | CCTTTTGATAACATGCGATG+TGG | - | chr1.4:36051112-36051131 | MS.gene41218:CDS | 40.0% |
| !! | GTTTTAGACCCTCTTTGACA+GGG | + | chr1.4:36050931-36050950 | None:intergenic | 40.0% |
| !! | TCACCTTTAGGGTATGGTAT+GGG | - | chr1.4:36050575-36050594 | MS.gene41218:CDS | 40.0% |
| !!! | AGTTTTAGACCCTCTTTGAC+AGG | + | chr1.4:36050932-36050951 | None:intergenic | 40.0% |
| !!! | GACCGTTTTAAAACGGTCTA+AGG | - | chr1.4:36050502-36050521 | MS.gene41218:CDS | 40.0% |
| ACTCACCTTCACACTCTACA+AGG | + | chr1.4:36050868-36050887 | None:intergenic | 45.0% | |
| AGGACGTGAGGGAAATGATA+AGG | + | chr1.4:36050413-36050432 | None:intergenic | 45.0% | |
| CTCGGGACATTGAACCAAAA+CGG | - | chr1.4:36050650-36050669 | MS.gene41218:CDS | 45.0% | |
| GACGTGAGGGAAATGATAAG+GGG | + | chr1.4:36050411-36050430 | None:intergenic | 45.0% | |
| GGAAGATGTTGTGTTTGGAG+AGG | + | chr1.4:36050268-36050287 | None:intergenic | 45.0% | |
| GGACGTGAGGGAAATGATAA+GGG | + | chr1.4:36050412-36050431 | None:intergenic | 45.0% | |
| GTCGAAGAGCTTAAGGGATA+AGG | - | chr1.4:36050991-36051010 | MS.gene41218:CDS | 45.0% | |
| GTTGTGTTTGGAGAGGTAAC+AGG | + | chr1.4:36050261-36050280 | None:intergenic | 45.0% | |
| TCAGGATGAGAAGATCCTTG+TGG | + | chr1.4:36050112-36050131 | None:intergenic | 45.0% | |
| TCAGTTGAAGTTACAGCGTC+AGG | - | chr1.4:36050547-36050566 | MS.gene41218:CDS | 45.0% | |
| TCGCTGCAGTGAAACAATAC+TGG | + | chr1.4:36050680-36050699 | None:intergenic | 45.0% | |
| TGAAGGTGAGTTGTTGCTAG+TGG | - | chr1.4:36050877-36050896 | MS.gene41218:CDS | 45.0% | |
| TGAGGGAAATGATAAGGGGA+AGG | + | chr1.4:36050407-36050426 | None:intergenic | 45.0% | |
| TGCATTTCGAGAATCCACTC+CGG | + | chr1.4:36051220-36051239 | None:intergenic | 45.0% | |
| TGGCTGAACATGTGAATGGA+GGG | - | chr1.4:36050831-36050850 | MS.gene41218:CDS | 45.0% | |
| TGTCGAGTCGTGAAGATATC+AGG | + | chr1.4:36050130-36050149 | None:intergenic | 45.0% | |
| ! | CTTGTTGTGGTGGTTTGATG+AGG | + | chr1.4:36050289-36050308 | None:intergenic | 45.0% |
| ! | TTTGGGTTCCCTGTCAAAGA+GGG | - | chr1.4:36050920-36050939 | MS.gene41218:CDS | 45.0% |
| !! | GTCACCTTTAGGGTATGGTA+TGG | - | chr1.4:36050574-36050593 | MS.gene41218:CDS | 45.0% |
| !!! | TTTTCAAGTCGAGGACGTGA+GGG | + | chr1.4:36050424-36050443 | None:intergenic | 45.0% |
| !!! | TTTTGGGTTCCCTGTCAAAG+AGG | - | chr1.4:36050919-36050938 | MS.gene41218:CDS | 45.0% |
| !!! | TTTTTCAAGTCGAGGACGTG+AGG | + | chr1.4:36050425-36050444 | None:intergenic | 45.0% |
| AACAACAAACCCTCCGTCCT+TGG | - | chr1.4:36050312-36050331 | MS.gene41218:CDS | 50.0% | |
| AGTCAAGTGATCGGAGTGGA+TGG | + | chr1.4:36050382-36050401 | None:intergenic | 50.0% | |
| ATTGGTCGGACAGTTGCGTT+TGG | - | chr1.4:36050785-36050804 | MS.gene41218:CDS | 50.0% | |
| ATTTCGAGAATCCACTCCGG+AGG | + | chr1.4:36051217-36051236 | None:intergenic | 50.0% | |
| GGCTGAACATGTGAATGGAG+GGG | - | chr1.4:36050832-36050851 | MS.gene41218:CDS | 50.0% | |
| GTCAGGATCCGTCACCTTTA+GGG | - | chr1.4:36050564-36050583 | MS.gene41218:CDS | 50.0% | |
| GTGGCTGAACATGTGAATGG+AGG | - | chr1.4:36050830-36050849 | MS.gene41218:CDS | 50.0% | |
| TCTGATCAACCAAGGACGGA+GGG | + | chr1.4:36050324-36050343 | None:intergenic | 50.0% | |
| TTCTGATCAACCAAGGACGG+AGG | + | chr1.4:36050325-36050344 | None:intergenic | 50.0% | |
| !! | AGACTGGTCTACACTCCACA+AGG | - | chr1.4:36050094-36050113 | MS.gene41218:CDS | 50.0% |
| !! | GATCCGTCACCTTTAGGGTA+TGG | - | chr1.4:36050569-36050588 | MS.gene41218:CDS | 50.0% |
| CAACTTCTTCTGGCCACCTC+CGG | - | chr1.4:36051198-36051217 | MS.gene41218:CDS | 55.0% | |
| CGTCAGGATCCGTCACCTTT+AGG | - | chr1.4:36050563-36050582 | MS.gene41218:CDS | 55.0% | |
| GGGAAGGCGAGTCAAGTGAT+CGG | + | chr1.4:36050391-36050410 | None:intergenic | 55.0% | |
| TCGGACAGTTGCGTTTGGAC+TGG | - | chr1.4:36050790-36050809 | MS.gene41218:CDS | 55.0% | |
| TTCACTGCAGCGAACAGCGT+TGG | - | chr1.4:36050687-36050706 | MS.gene41218:CDS | 55.0% | |
| GGCGAGTCAAGTGATCGGAG+TGG | + | chr1.4:36050386-36050405 | None:intergenic | 60.0% | |
| TCGAGAATCCACTCCGGAGG+TGG | + | chr1.4:36051214-36051233 | None:intergenic | 60.0% | |
| TGTAGACCAGTCTGCCGCCA+TGG | + | chr1.4:36050087-36050106 | None:intergenic | 60.0% | |
| TCTTCTGGCCACCTCCGGAG+TGG | - | chr1.4:36051203-36051222 | MS.gene41218:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 36050080 | 36051252 | 36050080 | ID=MS.gene41218 |
| chr1.4 | mRNA | 36050080 | 36051252 | 36050080 | ID=MS.gene41218.t1;Parent=MS.gene41218 |
| chr1.4 | exon | 36050080 | 36051252 | 36050080 | ID=MS.gene41218.t1.exon1;Parent=MS.gene41218.t1 |
| chr1.4 | CDS | 36050080 | 36051252 | 36050080 | ID=cds.MS.gene41218.t1;Parent=MS.gene41218.t1 |
| Gene Sequence |
| Protein sequence |
