Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41220.t1 | XP_024631476.1 | 93.2 | 948 | 51 | 2 | 1 | 945 | 1 | 938 | 0.00E+00 | 1604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41220.t1 | A4FUF0 | 37.0 | 92 | 53 | 3 | 289 | 380 | 8 | 94 | 2.4e-08 | 62.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41220.t1 | A0A072VHV7 | 93.2 | 948 | 51 | 2 | 1 | 945 | 1 | 938 | 0.0e+00 | 1604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46640 | MS.gene41220 | PPI |
| MS.gene050299 | MS.gene41220 | PPI |
| MS.gene92710 | MS.gene41220 | PPI |
| MS.gene007196 | MS.gene41220 | PPI |
| MS.gene77911 | MS.gene41220 | PPI |
| MS.gene045235 | MS.gene41220 | PPI |
| MS.gene067033 | MS.gene41220 | PPI |
| MS.gene75575 | MS.gene41220 | PPI |
| MS.gene045232 | MS.gene41220 | PPI |
| MS.gene045233 | MS.gene41220 | PPI |
| MS.gene037044 | MS.gene41220 | PPI |
| MS.gene55120 | MS.gene41220 | PPI |
| MS.gene79130 | MS.gene41220 | PPI |
| MS.gene24697 | MS.gene41220 | PPI |
| MS.gene95527 | MS.gene41220 | PPI |
| MS.gene07741 | MS.gene41220 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41220.t1 | MTR_1g049120 | 94.093 | 948 | 43 | 2 | 1 | 945 | 1 | 938 | 0.0 | 1811 |
| MS.gene41220.t1 | MTR_4g036445 | 60.292 | 617 | 189 | 13 | 8 | 581 | 15 | 618 | 0.0 | 678 |
| MS.gene41220.t1 | MTR_1g072780 | 54.148 | 687 | 247 | 14 | 280 | 945 | 355 | 994 | 0.0 | 660 |
| MS.gene41220.t1 | MTR_2g047912 | 61.039 | 462 | 106 | 10 | 471 | 919 | 272 | 672 | 6.75e-162 | 490 |
| MS.gene41220.t1 | MTR_2g047912 | 55.862 | 145 | 61 | 2 | 101 | 243 | 130 | 273 | 2.90e-34 | 140 |
| MS.gene41220.t1 | MTR_2g104120 | 30.354 | 649 | 353 | 16 | 287 | 916 | 258 | 826 | 2.41e-83 | 287 |
| MS.gene41220.t1 | MTR_1g066890 | 31.610 | 677 | 344 | 20 | 278 | 916 | 307 | 902 | 3.95e-83 | 288 |
| MS.gene41220.t1 | MTR_2g104980 | 55.340 | 103 | 45 | 1 | 287 | 389 | 233 | 334 | 1.06e-35 | 142 |
| MS.gene41220.t1 | MTR_6g005840 | 35.450 | 189 | 118 | 4 | 283 | 470 | 268 | 453 | 5.18e-26 | 115 |
| MS.gene41220.t1 | MTR_6g005840 | 35.450 | 189 | 118 | 4 | 283 | 470 | 226 | 411 | 5.49e-26 | 115 |
| MS.gene41220.t1 | MTR_6g005960 | 35.233 | 193 | 121 | 4 | 283 | 474 | 208 | 397 | 5.34e-25 | 112 |
| MS.gene41220.t1 | MTR_7g113180 | 32.402 | 179 | 117 | 3 | 287 | 462 | 87 | 264 | 5.46e-24 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41220.t1 | AT3G09670 | 36.856 | 388 | 193 | 12 | 286 | 623 | 196 | 581 | 4.50e-60 | 219 |
| MS.gene41220.t1 | AT3G09670 | 36.856 | 388 | 193 | 12 | 286 | 623 | 196 | 581 | 4.50e-60 | 219 |
| MS.gene41220.t1 | AT5G02950 | 39.643 | 280 | 138 | 8 | 290 | 561 | 98 | 354 | 2.61e-53 | 197 |
| MS.gene41220.t1 | AT5G02950 | 53.846 | 78 | 36 | 0 | 837 | 914 | 546 | 623 | 6.51e-18 | 89.4 |
| MS.gene41220.t1 | AT5G02950 | 39.643 | 280 | 138 | 8 | 290 | 561 | 98 | 354 | 2.61e-53 | 197 |
| MS.gene41220.t1 | AT5G02950 | 53.846 | 78 | 36 | 0 | 837 | 914 | 546 | 623 | 6.51e-18 | 89.4 |
| MS.gene41220.t1 | AT3G54760 | 38.395 | 349 | 137 | 8 | 575 | 921 | 470 | 742 | 2.96e-53 | 199 |
| MS.gene41220.t1 | AT3G54760 | 38.395 | 349 | 137 | 8 | 575 | 921 | 501 | 773 | 4.13e-53 | 199 |
| MS.gene41220.t1 | AT5G40340 | 36.683 | 199 | 113 | 7 | 287 | 478 | 125 | 317 | 2.05e-25 | 114 |
| MS.gene41220.t1 | AT5G40340 | 36.683 | 199 | 113 | 7 | 287 | 478 | 125 | 317 | 2.59e-25 | 113 |
| MS.gene41220.t1 | AT5G27650 | 33.702 | 181 | 112 | 5 | 287 | 462 | 171 | 348 | 1.55e-23 | 108 |
| MS.gene41220.t1 | AT3G05430 | 26.087 | 299 | 196 | 7 | 177 | 462 | 24 | 310 | 1.47e-22 | 104 |
| MS.gene41220.t1 | AT3G05430 | 26.087 | 299 | 196 | 7 | 177 | 462 | 24 | 310 | 1.70e-22 | 104 |
| MS.gene41220.t1 | AT3G27860 | 28.333 | 300 | 178 | 14 | 281 | 570 | 55 | 327 | 2.33e-15 | 81.3 |
| MS.gene41220.t1 | AT3G27860 | 28.333 | 300 | 178 | 14 | 281 | 570 | 55 | 327 | 2.33e-15 | 81.3 |
Find 193 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATTTCGTCGCATATTT+TGG | 0.097709 | 1.4:+36025494 | MS.gene41220:CDS |
| CCTCCACAATGTTGTATTTC+TGG | 0.135555 | 1.4:-36025929 | None:intergenic |
| GCTAAGAAGTTCAACATATT+TGG | 0.166046 | 1.4:+36027210 | MS.gene41220:CDS |
| AACAAAATGTTTAAGCGTTT+TGG | 0.179710 | 1.4:+36027090 | MS.gene41220:CDS |
| GACCATATTAACTTCAAAAT+TGG | 0.197232 | 1.4:-36027334 | None:intergenic |
| TTCTCTCTCAGATATGGTTT+GGG | 0.239508 | 1.4:+36025382 | MS.gene41220:CDS |
| TCTTCAAATTCAAATGTTTC+AGG | 0.243949 | 1.4:-36026679 | None:intergenic |
| TTTGTTAAGGTTTGCTTCTA+AGG | 0.244285 | 1.4:-36027073 | None:intergenic |
| GTCTCAAGACGAGTCGAATA+TGG | 0.258530 | 1.4:+36025644 | MS.gene41220:CDS |
| GGTGATTCTGTTGGGGTAGT+TGG | 0.264248 | 1.4:+36024530 | MS.gene41220:CDS |
| TGAGTTGGGTAGCGTTGTTT+TGG | 0.301534 | 1.4:+36024628 | MS.gene41220:CDS |
| TACGGCTGGCTTTGATCGTT+TGG | 0.305489 | 1.4:+36025844 | MS.gene41220:CDS |
| TTTCTCTCTCAGATATGGTT+TGG | 0.312975 | 1.4:+36025381 | MS.gene41220:CDS |
| GTGACCCAGTTCCAACTATT+GGG | 0.320240 | 1.4:-36026657 | None:intergenic |
| GGTGACCCAGTTCCAACTAT+TGG | 0.324538 | 1.4:-36026658 | None:intergenic |
| GACACATCTGATTCATTATC+AGG | 0.324654 | 1.4:-36026412 | None:intergenic |
| CGATTAACTTGGGCTGGCTT+TGG | 0.335599 | 1.4:-36026922 | None:intergenic |
| TCAGGTGAAACCAGATTATC+TGG | 0.347288 | 1.4:-36026160 | None:intergenic |
| GGCTTTGGTGACTTGGAAGC+TGG | 0.350982 | 1.4:-36026907 | None:intergenic |
| AACAATTGGTGACTTCAATA+TGG | 0.352969 | 1.4:+36024700 | MS.gene41220:CDS |
| ATCATGTCATAGGTGTCTTT+AGG | 0.355766 | 1.4:-36025686 | None:intergenic |
| AGTATCCGGTTGAGGAATCT+AGG | 0.358039 | 1.4:+36024561 | MS.gene41220:CDS |
| GGTGACTTGGAAGCTGGCTT+TGG | 0.358660 | 1.4:-36026901 | None:intergenic |
| CACCAGCAATTTGCACATCA+TGG | 0.371992 | 1.4:-36024457 | None:intergenic |
| AATCACACTGAGGAGGTTAA+AGG | 0.372012 | 1.4:+36024971 | MS.gene41220:CDS |
| CCATCACCATCAGGAGAATC+TGG | 0.383648 | 1.4:-36026130 | None:intergenic |
| CGGATATATTTGGTATTAAG+AGG | 0.384275 | 1.4:+36026626 | MS.gene41220:CDS |
| TGATTTGTGGTGATTCTGTT+GGG | 0.386475 | 1.4:+36024522 | MS.gene41220:CDS |
| TGCACTGGTTTCTGTTGCAC+TGG | 0.388524 | 1.4:-36026772 | None:intergenic |
| TGCACTGGTTTCTGTTGCAC+TGG | 0.388524 | 1.4:-36026787 | None:intergenic |
| TTGGGCTGGCTTTGGTGACT+TGG | 0.390533 | 1.4:-36026914 | None:intergenic |
| AGAAGTCACCCATGGTGGCC+TGG | 0.392403 | 1.4:+36025413 | MS.gene41220:CDS |
| GGTGACTTAACAGCTGGCTT+TGG | 0.393998 | 1.4:-36026880 | None:intergenic |
| TTCCGTGATGGTTGTTGCAC+TGG | 0.394785 | 1.4:-36026817 | None:intergenic |
| AGAGATCGAAAACCATTTCC+TGG | 0.398045 | 1.4:-36027311 | None:intergenic |
| ATTGCTGGTGAAACCCTAGA+TGG | 0.398415 | 1.4:+36024470 | MS.gene41220:CDS |
| CACATATCACAGACCCATCT+AGG | 0.398644 | 1.4:-36024484 | None:intergenic |
| CCCAACTGATGAGGATGATC+AGG | 0.400132 | 1.4:+36026438 | MS.gene41220:CDS |
| TCACTGCGTCACCTTCTATA+AGG | 0.403119 | 1.4:+36026338 | MS.gene41220:CDS |
| TGTGAGCGGTGTTTCTGCTT+TGG | 0.414830 | 1.4:+36024868 | MS.gene41220:CDS |
| TCTGTTTCAGATTCCTTAAG+TGG | 0.417444 | 1.4:-36027114 | None:intergenic |
| CTGTAGTTGTGGCTGCTGAT+TGG | 0.424377 | 1.4:+36026587 | MS.gene41220:CDS |
| GGCTTTGGTGACTTAACAGC+TGG | 0.426756 | 1.4:-36026886 | None:intergenic |
| GAAGTCACCCATGGTGGCCT+GGG | 0.429264 | 1.4:+36025414 | MS.gene41220:CDS |
| AAGATATGAGCGACACGTAT+TGG | 0.429636 | 1.4:+36026698 | MS.gene41220:CDS |
| ATTCTGTTGGGGTAGTTGGT+GGG | 0.439002 | 1.4:+36024534 | MS.gene41220:CDS |
| TCAAAGTCTCCATCTGCCTT+TGG | 0.439286 | 1.4:-36026382 | None:intergenic |
| ACAAAGTCATCGTTTAAAAT+CGG | 0.439705 | 1.4:+36026286 | MS.gene41220:CDS |
| GCAACGGTGCATGGCTCCCT+TGG | 0.441735 | 1.4:-36025172 | None:intergenic |
| TTCCATCGCGCAACGGTGCA+TGG | 0.449140 | 1.4:-36025181 | None:intergenic |
| CAAGGTGTCAAATGGTGGTC+AGG | 0.449537 | 1.4:+36025217 | MS.gene41220:CDS |
| TGGTCGGACTCCAGATAATC+TGG | 0.450902 | 1.4:+36026150 | MS.gene41220:CDS |
| GTGAGAGATGAAGCAGTAGT+TGG | 0.452544 | 1.4:+36024659 | MS.gene41220:CDS |
| CTAGAACACTTCCTTATAGA+AGG | 0.452692 | 1.4:-36026349 | None:intergenic |
| GCTTTAGCAGGTAGTTCTGT+AGG | 0.454456 | 1.4:+36024776 | MS.gene41220:CDS |
| CACCTGAACATTCCAAGAAA+AGG | 0.455137 | 1.4:+36026176 | MS.gene41220:CDS |
| AGTTGGTGGGACCGAGTATC+CGG | 0.455528 | 1.4:+36024547 | MS.gene41220:CDS |
| GATTCTGTTGGGGTAGTTGG+TGG | 0.455837 | 1.4:+36024533 | MS.gene41220:CDS |
| TAGTTCAGAAATAGTTCATC+AGG | 0.456384 | 1.4:+36025319 | MS.gene41220:CDS |
| ACCCATGATGTGCAAATTGC+TGG | 0.460593 | 1.4:+36024455 | MS.gene41220:CDS |
| TGCACTGGTTTCTGTTGCGC+TGG | 0.460959 | 1.4:-36026757 | None:intergenic |
| GGCTTACGATTAACTTGGGC+TGG | 0.461800 | 1.4:-36026928 | None:intergenic |
| AATCTGGAGTCCCATTCATT+AGG | 0.464940 | 1.4:-36026114 | None:intergenic |
| TATAGGGCTTACGATTAACT+TGG | 0.466075 | 1.4:-36026933 | None:intergenic |
| AAAGCGTAAATATAAGTTCA+AGG | 0.468189 | 1.4:+36026051 | MS.gene41220:CDS |
| GTGATTTGTGGTGATTCTGT+TGG | 0.468729 | 1.4:+36024521 | MS.gene41220:CDS |
| TATTGAGACTGAGGAAAACT+TGG | 0.469804 | 1.4:+36025109 | MS.gene41220:CDS |
| TAGATGGGTCTGTGATATGT+GGG | 0.470687 | 1.4:+36024486 | MS.gene41220:CDS |
| TTTGGTGACTTAGCAGAGAC+TGG | 0.474173 | 1.4:-36026862 | None:intergenic |
| TCTTAAAGACCACTCTTGCC+CGG | 0.475118 | 1.4:-36027155 | None:intergenic |
| CTCCATCTGCCTTTGGAGAT+CGG | 0.475922 | 1.4:-36026375 | None:intergenic |
| TTCTGTTGTTGCAGGTTCGT+CGG | 0.476309 | 1.4:+36025082 | MS.gene41220:intron |
| AATCGGTGATTGTATTCGTC+GGG | 0.480709 | 1.4:+36026303 | MS.gene41220:CDS |
| GAGTGCTATTAATTGTGCTT+TGG | 0.482515 | 1.4:+36025616 | MS.gene41220:CDS |
| ACAACCCTAGATTCCTCAAC+CGG | 0.485275 | 1.4:-36024566 | None:intergenic |
| TCTCAAGACGAGTCGAATAT+GGG | 0.485338 | 1.4:+36025645 | MS.gene41220:CDS |
| TCCTGATCATCCTCATCAGT+TGG | 0.488623 | 1.4:-36026439 | None:intergenic |
| GTTGTAGAATTTGAAGAAGC+CGG | 0.488694 | 1.4:+36024584 | MS.gene41220:CDS |
| GCTATCTTCACTTCAGCTTG+TGG | 0.491218 | 1.4:+36026492 | MS.gene41220:CDS |
| GAAGCTTTGAACAGTGCACT+TGG | 0.493568 | 1.4:-36027267 | None:intergenic |
| CATTTCGGAGTCATCGGCGT+AGG | 0.493727 | 1.4:-36026218 | None:intergenic |
| ACCAGCAATTTGCACATCAT+GGG | 0.496336 | 1.4:-36024456 | None:intergenic |
| TTGTTAAGGTTTGCTTCTAA+GGG | 0.496576 | 1.4:-36027072 | None:intergenic |
| AGGATGTCAGACCTAATGAA+TGG | 0.497931 | 1.4:+36026103 | MS.gene41220:CDS |
| TGCAACACAAGACCAGGAAA+TGG | 0.498131 | 1.4:+36027299 | MS.gene41220:CDS |
| GGAGTCCGACCATCACCATC+AGG | 0.498959 | 1.4:-36026139 | None:intergenic |
| AAAGTCAACAAGGTGTCAAA+TGG | 0.503103 | 1.4:+36025209 | MS.gene41220:CDS |
| CTTTAGCAGGTAGTTCTGTA+GGG | 0.504598 | 1.4:+36024777 | MS.gene41220:CDS |
| ACAGTTGTCGAAACAACAAT+TGG | 0.506584 | 1.4:+36024686 | MS.gene41220:CDS |
| ATCTTGCATTTCGGAGTCAT+CGG | 0.509912 | 1.4:-36026224 | None:intergenic |
| TGCACCGTTGCGCGATGGAA+AGG | 0.511662 | 1.4:+36025184 | MS.gene41220:CDS |
| CTAGATGGGTCTGTGATATG+TGG | 0.514325 | 1.4:+36024485 | MS.gene41220:CDS |
| CACTGTGCATCCATCAAAGA+AGG | 0.517034 | 1.4:+36026075 | MS.gene41220:CDS |
| TATCTTGTGATCTGCAGCCT+CGG | 0.517608 | 1.4:-36024732 | None:intergenic |
| ATTCCTATGCTCTTCAATTG+TGG | 0.519415 | 1.4:-36025576 | None:intergenic |
| TTGTAGAATTTGAAGAAGCC+GGG | 0.519547 | 1.4:+36024585 | MS.gene41220:CDS |
| CACTTGGAGTGTAATTAAGC+TGG | 0.521123 | 1.4:-36027251 | None:intergenic |
| GAATGCAGCGGAAGTTGAGT+TGG | 0.521460 | 1.4:+36024613 | MS.gene41220:CDS |
| TCAGAAAAGTATACTCTCCA+AGG | 0.523646 | 1.4:-36026525 | None:intergenic |
| CTATCCGAGTTTCCTACGGC+TGG | 0.525255 | 1.4:+36025830 | MS.gene41220:CDS |
| CCTGATCATCCTCATCAGTT+GGG | 0.525465 | 1.4:-36026438 | None:intergenic |
| TTCCGCTGCATTCTCACTCC+CGG | 0.526328 | 1.4:-36024603 | None:intergenic |
| AAGTTGATAGAGTAAGCAGC+CGG | 0.526372 | 1.4:+36027136 | MS.gene41220:CDS |
| AAGTTCATAACAAGCTCAGC+AGG | 0.528013 | 1.4:-36027030 | None:intergenic |
| AGCAATGATGATGCTTTAGC+AGG | 0.528080 | 1.4:+36024764 | MS.gene41220:CDS |
| ATTTCGGAGTCATCGGCGTA+GGG | 0.529828 | 1.4:-36026217 | None:intergenic |
| TTTCAGAAATTCTGTAGTTG+TGG | 0.530415 | 1.4:+36026576 | MS.gene41220:CDS |
| ACATATTCTATAAGATTCAA+AGG | 0.532546 | 1.4:-36025800 | None:intergenic |
| GGATGTCAGACCTAATGAAT+GGG | 0.533475 | 1.4:+36026104 | MS.gene41220:CDS |
| AGTAAGCAGCCGGGCAAGAG+TGG | 0.535181 | 1.4:+36027146 | MS.gene41220:CDS |
| GCGACACGTATTGGACTGAC+AGG | 0.535367 | 1.4:+36026707 | MS.gene41220:CDS |
| AAACTAAGAGATAGAAAAGC+CGG | 0.536173 | 1.4:+36025272 | MS.gene41220:CDS |
| AGATTCCTCAACCGGATACT+CGG | 0.539506 | 1.4:-36024558 | None:intergenic |
| GACGGATCAAATATCTGCCC+AGG | 0.544596 | 1.4:-36025431 | None:intergenic |
| TTTGGAGCTTGTGACTGCTA+AGG | 0.547748 | 1.4:+36025862 | MS.gene41220:CDS |
| TTGGGGACAAAACATTTGCA+TGG | 0.547879 | 1.4:+36025513 | MS.gene41220:CDS |
| GTCAGACAGTAGAGAACACC+GGG | 0.548651 | 1.4:+36025714 | MS.gene41220:CDS |
| AATGCAGCGGAAGTTGAGTT+GGG | 0.550361 | 1.4:+36024614 | MS.gene41220:CDS |
| AAACATGCACTTGTGAAGCC+TGG | 0.550664 | 1.4:+36025296 | MS.gene41220:CDS |
| TCTCTCTCAGATATGGTTTG+GGG | 0.553140 | 1.4:+36025383 | MS.gene41220:CDS |
| AGCCATGCACCGTTGCGCGA+TGG | 0.555384 | 1.4:+36025179 | MS.gene41220:CDS |
| AACACTATCCGAGTTTCCTA+CGG | 0.556285 | 1.4:+36025826 | MS.gene41220:CDS |
| CAATATGGTGGATGCTGCCG+AGG | 0.556556 | 1.4:+36024715 | MS.gene41220:CDS |
| GCCCTCTCAGATGCATCTGA+CGG | 0.559014 | 1.4:-36025449 | None:intergenic |
| CCAGATTCTCCTGATGGTGA+TGG | 0.559245 | 1.4:+36026130 | MS.gene41220:CDS |
| AAATCGGTGATTGTATTCGT+CGG | 0.559399 | 1.4:+36026302 | MS.gene41220:CDS |
| ATGACTCCGAAATGCAAGAT+GGG | 0.560146 | 1.4:+36026227 | MS.gene41220:CDS |
| GACACTCAAGTTACTGACCA+AGG | 0.560989 | 1.4:+36025155 | MS.gene41220:CDS |
| TGGGACCGAGTATCCGGTTG+AGG | 0.563199 | 1.4:+36024553 | MS.gene41220:CDS |
| TGAACTATTTCTGAACTACC+AGG | 0.564289 | 1.4:-36025314 | None:intergenic |
| TGACCCAGTTCCAACTATTG+GGG | 0.565841 | 1.4:-36026656 | None:intergenic |
| ATATCTGCCCAGGCCACCAT+GGG | 0.565877 | 1.4:-36025421 | None:intergenic |
| GATGACTCCGAAATGCAAGA+TGG | 0.571916 | 1.4:+36026226 | MS.gene41220:CDS |
| CAGAAAAGTATACTCTCCAA+GGG | 0.576757 | 1.4:-36026524 | None:intergenic |
| ACTTATTTCTTGTTGAACCC+CGG | 0.576846 | 1.4:-36025732 | None:intergenic |
| GACCGATCTCCAAAGGCAGA+TGG | 0.577314 | 1.4:+36026373 | MS.gene41220:CDS |
| AAAGCCAGCCGTAGGAAACT+CGG | 0.577817 | 1.4:-36025834 | None:intergenic |
| CCTTGAAAAGTGCAACTCAA+AGG | 0.579594 | 1.4:+36024823 | MS.gene41220:CDS |
| AATAAGTATCACACATGAGG+TGG | 0.580958 | 1.4:+36025748 | MS.gene41220:CDS |
| GGGACTCCAGATTCTCCTGA+TGG | 0.585166 | 1.4:+36026124 | MS.gene41220:CDS |
| TTCTAGTGACCGATCTCCAA+AGG | 0.585712 | 1.4:+36026366 | MS.gene41220:CDS |
| GGTCATAATGAAGTGATTTG+TGG | 0.586282 | 1.4:+36024509 | MS.gene41220:CDS |
| TGTTGATGCAACACAAGACC+AGG | 0.588104 | 1.4:+36027293 | MS.gene41220:CDS |
| AATATCTGCCCAGGCCACCA+TGG | 0.588370 | 1.4:-36025422 | None:intergenic |
| AGATGGGTCTGTGATATGTG+GGG | 0.588914 | 1.4:+36024487 | MS.gene41220:CDS |
| TTCTGAAAGCAATCCTGCCG+AGG | 0.595525 | 1.4:+36026969 | MS.gene41220:CDS |
| TCTCCACAATTGAAGAGCAT+AGG | 0.596184 | 1.4:+36025573 | MS.gene41220:CDS |
| GTATCCGGTTGAGGAATCTA+GGG | 0.602732 | 1.4:+36024562 | MS.gene41220:CDS |
| AAGCACAATTAATAGCACTC+TGG | 0.605736 | 1.4:-36025613 | None:intergenic |
| TTGCTGGTGAAACCCTAGAT+GGG | 0.606134 | 1.4:+36024471 | MS.gene41220:CDS |
| GTCAACAAGGTGTCAAATGG+TGG | 0.607439 | 1.4:+36025212 | MS.gene41220:CDS |
| ATAGGGCTTACGATTAACTT+GGG | 0.608401 | 1.4:-36026932 | None:intergenic |
| ACATTGTGGAGGTGTTGACC+CGG | 0.610706 | 1.4:+36025940 | MS.gene41220:CDS |
| ATTCTCCTGATGGTGATGGT+CGG | 0.611694 | 1.4:+36026134 | MS.gene41220:CDS |
| GATTTGTGGTGATTCTGTTG+GGG | 0.613739 | 1.4:+36024523 | MS.gene41220:CDS |
| ACATATCACAGACCCATCTA+GGG | 0.617936 | 1.4:-36024483 | None:intergenic |
| CAACAATCTGATGTACATGA+GGG | 0.618201 | 1.4:+36024896 | MS.gene41220:CDS |
| TAAGGGAACAGAATTGAGCT+CGG | 0.619176 | 1.4:-36027055 | None:intergenic |
| TAAGAAATGTGTAGATGCAG+AGG | 0.619624 | 1.4:+36027173 | MS.gene41220:CDS |
| AGAAATAAGTATCACACATG+AGG | 0.622833 | 1.4:+36025745 | MS.gene41220:CDS |
| TCCGTCAGATGCATCTGAGA+GGG | 0.624122 | 1.4:+36025448 | MS.gene41220:CDS |
| AGTTGATAGAGTAAGCAGCC+GGG | 0.624544 | 1.4:+36027137 | MS.gene41220:CDS |
| AACCAGTGCAACAACCATCA+CGG | 0.625880 | 1.4:+36026815 | MS.gene41220:CDS |
| TCAACAATCTGATGTACATG+AGG | 0.628279 | 1.4:+36024895 | MS.gene41220:CDS |
| GATGGGTCTGTGATATGTGG+GGG | 0.630525 | 1.4:+36024488 | MS.gene41220:CDS |
| TGTGTCTCTCCCAACTGATG+AGG | 0.631262 | 1.4:+36026429 | MS.gene41220:CDS |
| AAACGATCAAAGCCAGCCGT+AGG | 0.635310 | 1.4:-36025842 | None:intergenic |
| AGCCGGGAGTGAGAATGCAG+CGG | 0.635774 | 1.4:+36024601 | MS.gene41220:CDS |
| GCATTGTCATCTATATAACC+AGG | 0.644206 | 1.4:-36027006 | None:intergenic |
| CTTGTGGCACAAGAACCCCT+TGG | 0.646167 | 1.4:+36026508 | MS.gene41220:CDS |
| GTCGGTGTCTATTGAGACTG+AGG | 0.648701 | 1.4:+36025100 | MS.gene41220:CDS |
| ATCCGTCAGATGCATCTGAG+AGG | 0.653593 | 1.4:+36025447 | MS.gene41220:CDS |
| GACCCAGTTCCAACTATTGG+GGG | 0.653992 | 1.4:-36026655 | None:intergenic |
| AATTGGTGACTTCAATATGG+TGG | 0.655107 | 1.4:+36024703 | MS.gene41220:CDS |
| TTTAGCAGGTAGTTCTGTAG+GGG | 0.655647 | 1.4:+36024778 | MS.gene41220:CDS |
| GCAAAGTGAGAAGTCACCCA+TGG | 0.661126 | 1.4:+36025405 | MS.gene41220:CDS |
| ACACTCAAGTTACTGACCAA+GGG | 0.665022 | 1.4:+36025156 | MS.gene41220:CDS |
| AGTCAGACAGTAGAGAACAC+CGG | 0.667248 | 1.4:+36025713 | MS.gene41220:CDS |
| TAGATAGTGAAGATCAACAA+GGG | 0.673594 | 1.4:+36024927 | MS.gene41220:CDS |
| ACTGACAGGGTCATTGACAA+TGG | 0.674175 | 1.4:+36026721 | MS.gene41220:CDS |
| AAGTGAGAAGTCACCCATGG+TGG | 0.677906 | 1.4:+36025408 | MS.gene41220:CDS |
| AACAATCTGATGTACATGAG+GGG | 0.678034 | 1.4:+36024897 | MS.gene41220:CDS |
| AACAGTGAATCACACTGAGG+AGG | 0.679331 | 1.4:+36024964 | MS.gene41220:CDS |
| TTGCACATCATGGGTCACAG+TGG | 0.689868 | 1.4:-36024447 | None:intergenic |
| ATAGCTGACAACGATGTGAG+CGG | 0.694340 | 1.4:+36024854 | MS.gene41220:CDS |
| TTGCCAGAAATACAACATTG+TGG | 0.702327 | 1.4:+36025926 | MS.gene41220:CDS |
| TTGTCATCTATATAACCAGG+AGG | 0.713037 | 1.4:-36027003 | None:intergenic |
| CCAGAAATACAACATTGTGG+AGG | 0.718025 | 1.4:+36025929 | MS.gene41220:CDS |
| CGACACGTATTGGACTGACA+GGG | 0.727026 | 1.4:+36026708 | MS.gene41220:CDS |
| ATAGATAGTGAAGATCAACA+AGG | 0.747974 | 1.4:+36024926 | MS.gene41220:CDS |
| AGAAAAGTATACTCTCCAAG+GGG | 0.750501 | 1.4:-36026523 | None:intergenic |
| TGAAACAGTGAATCACACTG+AGG | 0.797905 | 1.4:+36024961 | MS.gene41220:CDS |
| TCAGACAGTAGAGAACACCG+GGG | 0.900900 | 1.4:+36025715 | MS.gene41220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATTCTATAAGATTCAA+AGG | - | chr1.4:36025803-36025822 | None:intergenic | 20.0% |
| !! | ATTGAAAAAGTTAATGAAGT+TGG | + | chr1.4:36025242-36025261 | MS.gene41220:CDS | 20.0% |
| !! | TTGAAAAAGTTAATGAAGTT+GGG | + | chr1.4:36025243-36025262 | MS.gene41220:CDS | 20.0% |
| ! | AAAGCGTAAATATAAGTTCA+AGG | + | chr1.4:36026051-36026070 | MS.gene41220:CDS | 25.0% |
| ! | GACCATATTAACTTCAAAAT+TGG | - | chr1.4:36027337-36027356 | None:intergenic | 25.0% |
| ! | TCTTCAAATTCAAATGTTTC+AGG | - | chr1.4:36026682-36026701 | None:intergenic | 25.0% |
| !! | AACAAAATGTTTAAGCGTTT+TGG | + | chr1.4:36027090-36027109 | MS.gene41220:CDS | 25.0% |
| !! | AACGCTTAAACATTTTGTTA+AGG | - | chr1.4:36027089-36027108 | None:intergenic | 25.0% |
| !! | ACAAAGTCATCGTTTAAAAT+CGG | + | chr1.4:36026286-36026305 | MS.gene41220:CDS | 25.0% |
| !! | ACTTATATTTACGCTTTTGA+CGG | - | chr1.4:36026048-36026067 | None:intergenic | 25.0% |
| !!! | AGAATTGTTTTTCTTGGTAT+AGG | - | chr1.4:36026953-36026972 | None:intergenic | 25.0% |
| !!! | ATCTAAGCTAAAGCATTTTA+GGG | + | chr1.4:36025544-36025563 | MS.gene41220:CDS | 25.0% |
| !!! | CTCCAATTTTGAAGTTAATA+TGG | + | chr1.4:36027332-36027351 | MS.gene41220:CDS | 25.0% |
| !!! | CTTGCTTTTAATCGTTTTAA+GGG | + | chr1.4:36025893-36025912 | MS.gene41220:CDS | 25.0% |
| !!! | GAATTGTTTTTCTTGGTATA+GGG | - | chr1.4:36026952-36026971 | None:intergenic | 25.0% |
| AAACTAAGAGATAGAAAAGC+CGG | + | chr1.4:36025272-36025291 | MS.gene41220:CDS | 30.0% | |
| AGAAATAAGTATCACACATG+AGG | + | chr1.4:36025745-36025764 | MS.gene41220:CDS | 30.0% | |
| ATAGATAGTGAAGATCAACA+AGG | + | chr1.4:36024926-36024945 | MS.gene41220:CDS | 30.0% | |
| ATCCATCAAAGAAGGAAAAA+AGG | + | chr1.4:36026083-36026102 | MS.gene41220:CDS | 30.0% | |
| CATCGTCAACAAAAAATGAA+TGG | - | chr1.4:36025967-36025986 | None:intergenic | 30.0% | |
| CGGATATATTTGGTATTAAG+AGG | + | chr1.4:36026626-36026645 | MS.gene41220:CDS | 30.0% | |
| GCTAAGAAGTTCAACATATT+TGG | + | chr1.4:36027210-36027229 | MS.gene41220:CDS | 30.0% | |
| TAGATAGTGAAGATCAACAA+GGG | + | chr1.4:36024927-36024946 | MS.gene41220:CDS | 30.0% | |
| TAGTTCAGAAATAGTTCATC+AGG | + | chr1.4:36025319-36025338 | MS.gene41220:CDS | 30.0% | |
| TCAACAAAAAATGAATGGTC+CGG | - | chr1.4:36025962-36025981 | None:intergenic | 30.0% | |
| TTTCAGAAATTCTGTAGTTG+TGG | + | chr1.4:36026576-36026595 | MS.gene41220:CDS | 30.0% | |
| ! | AACAATTGGTGACTTCAATA+TGG | + | chr1.4:36024700-36024719 | MS.gene41220:CDS | 30.0% |
| ! | ATTTTACGCACGGATATATT+TGG | + | chr1.4:36026616-36026635 | MS.gene41220:CDS | 30.0% |
| ! | CTGACTTTTAATCATGTCAT+AGG | - | chr1.4:36025699-36025718 | None:intergenic | 30.0% |
| ! | GATTTTAAACGATGACTTTG+TGG | - | chr1.4:36026287-36026306 | None:intergenic | 30.0% |
| ! | TATATAACCAGGAGGTTTTT+CGG | - | chr1.4:36026998-36027017 | None:intergenic | 30.0% |
| ! | TTGTTAAGGTTTGCTTCTAA+GGG | - | chr1.4:36027075-36027094 | None:intergenic | 30.0% |
| ! | TTTGTTAAGGTTTGCTTCTA+AGG | - | chr1.4:36027076-36027095 | None:intergenic | 30.0% |
| !! | CATCTAAGCTAAAGCATTTT+AGG | + | chr1.4:36025543-36025562 | MS.gene41220:CDS | 30.0% |
| !! | GCTTGCTTTTAATCGTTTTA+AGG | + | chr1.4:36025892-36025911 | MS.gene41220:CDS | 30.0% |
| !! | GCTTTCAGAATTGTTTTTCT+TGG | - | chr1.4:36026959-36026978 | None:intergenic | 30.0% |
| !!! | ATCCTTTTTTCCTTCTTTGA+TGG | - | chr1.4:36026088-36026107 | None:intergenic | 30.0% |
| !!! | GTTTTTTCCAGTTTAACTAC+TGG | + | chr1.4:36025007-36025026 | MS.gene41220:intron | 30.0% |
| AAATCGGTGATTGTATTCGT+CGG | + | chr1.4:36026302-36026321 | MS.gene41220:CDS | 35.0% | |
| AACAATCTGATGTACATGAG+GGG | + | chr1.4:36024897-36024916 | MS.gene41220:CDS | 35.0% | |
| AAGCACAATTAATAGCACTC+TGG | - | chr1.4:36025616-36025635 | None:intergenic | 35.0% | |
| AATAAGTATCACACATGAGG+TGG | + | chr1.4:36025748-36025767 | MS.gene41220:CDS | 35.0% | |
| ACAGTTGTCGAAACAACAAT+TGG | + | chr1.4:36024686-36024705 | MS.gene41220:CDS | 35.0% | |
| ACGATTACCAGTAGTTAAAC+TGG | - | chr1.4:36025017-36025036 | None:intergenic | 35.0% | |
| AGTTTAACTACTGGTAATCG+TGG | + | chr1.4:36025016-36025035 | MS.gene41220:intron | 35.0% | |
| ATAGGGCTTACGATTAACTT+GGG | - | chr1.4:36026935-36026954 | None:intergenic | 35.0% | |
| ATCATGTCATAGGTGTCTTT+AGG | - | chr1.4:36025689-36025708 | None:intergenic | 35.0% | |
| ATTCCTATGCTCTTCAATTG+TGG | - | chr1.4:36025579-36025598 | None:intergenic | 35.0% | |
| CAACAAAAAATGAATGGTCC+GGG | - | chr1.4:36025961-36025980 | None:intergenic | 35.0% | |
| CAACAATCTGATGTACATGA+GGG | + | chr1.4:36024896-36024915 | MS.gene41220:CDS | 35.0% | |
| CTAGAACACTTCCTTATAGA+AGG | - | chr1.4:36026352-36026371 | None:intergenic | 35.0% | |
| CTGCCAAAAGAAAAAGAAGA+AGG | + | chr1.4:36025353-36025372 | MS.gene41220:CDS | 35.0% | |
| GACACATCTGATTCATTATC+AGG | - | chr1.4:36026415-36026434 | None:intergenic | 35.0% | |
| GCAACTCCTGTAGTTAAAAA+AGG | + | chr1.4:36026016-36026035 | MS.gene41220:CDS | 35.0% | |
| GCATTGTCATCTATATAACC+AGG | - | chr1.4:36027009-36027028 | None:intergenic | 35.0% | |
| GGTCATAATGAAGTGATTTG+TGG | + | chr1.4:36024509-36024528 | MS.gene41220:CDS | 35.0% | |
| GTTGTAGAATTTGAAGAAGC+CGG | + | chr1.4:36024584-36024603 | MS.gene41220:CDS | 35.0% | |
| TAAGAAATGTGTAGATGCAG+AGG | + | chr1.4:36027173-36027192 | MS.gene41220:CDS | 35.0% | |
| TATAGGGCTTACGATTAACT+TGG | - | chr1.4:36026936-36026955 | None:intergenic | 35.0% | |
| TATTGAGACTGAGGAAAACT+TGG | + | chr1.4:36025109-36025128 | MS.gene41220:CDS | 35.0% | |
| TCAACAATCTGATGTACATG+AGG | + | chr1.4:36024895-36024914 | MS.gene41220:CDS | 35.0% | |
| TCTGTTTCAGATTCCTTAAG+TGG | - | chr1.4:36027117-36027136 | None:intergenic | 35.0% | |
| TGGAAAGGAAAAAGTCAACA+AGG | + | chr1.4:36025199-36025218 | MS.gene41220:CDS | 35.0% | |
| TTCTCTCTCAGATATGGTTT+GGG | + | chr1.4:36025382-36025401 | MS.gene41220:CDS | 35.0% | |
| TTGCCAGAAATACAACATTG+TGG | + | chr1.4:36025926-36025945 | MS.gene41220:CDS | 35.0% | |
| TTGTAGAATTTGAAGAAGCC+GGG | + | chr1.4:36024585-36024604 | MS.gene41220:CDS | 35.0% | |
| TTGTCATCTATATAACCAGG+AGG | - | chr1.4:36027006-36027025 | None:intergenic | 35.0% | |
| TTTCTCTCTCAGATATGGTT+TGG | + | chr1.4:36025381-36025400 | MS.gene41220:CDS | 35.0% | |
| ! | AAAGTCAACAAGGTGTCAAA+TGG | + | chr1.4:36025209-36025228 | MS.gene41220:CDS | 35.0% |
| ! | AATTGGTGACTTCAATATGG+TGG | + | chr1.4:36024703-36024722 | MS.gene41220:CDS | 35.0% |
| ! | ACTTATTTCTTGTTGAACCC+CGG | - | chr1.4:36025735-36025754 | None:intergenic | 35.0% |
| ! | AGAAAAGTATACTCTCCAAG+GGG | - | chr1.4:36026526-36026545 | None:intergenic | 35.0% |
| ! | ATATAACCAGGAGGTTTTTC+GGG | - | chr1.4:36026997-36027016 | None:intergenic | 35.0% |
| ! | CAGAAAAGTATACTCTCCAA+GGG | - | chr1.4:36026527-36026546 | None:intergenic | 35.0% |
| ! | CTATTTCGTCGCATATTTTG+GGG | + | chr1.4:36025496-36025515 | MS.gene41220:CDS | 35.0% |
| ! | GAGTGCTATTAATTGTGCTT+TGG | + | chr1.4:36025616-36025635 | MS.gene41220:CDS | 35.0% |
| ! | TCAGAAAAGTATACTCTCCA+AGG | - | chr1.4:36026528-36026547 | None:intergenic | 35.0% |
| ! | TCGCCTTCTTCTTTTTCTTT+TGG | - | chr1.4:36025359-36025378 | None:intergenic | 35.0% |
| ! | TGATTTGTGGTGATTCTGTT+GGG | + | chr1.4:36024522-36024541 | MS.gene41220:CDS | 35.0% |
| ! | TTGGAAAGAGATTTTACGCA+CGG | + | chr1.4:36026606-36026625 | MS.gene41220:CDS | 35.0% |
| ! | TTTTCTCCCATCTTGCATTT+CGG | - | chr1.4:36026236-36026255 | None:intergenic | 35.0% |
| !! | GCTATTTCGTCGCATATTTT+GGG | + | chr1.4:36025495-36025514 | MS.gene41220:CDS | 35.0% |
| !! | GGAGAGTATACTTTTCTGAA+TGG | + | chr1.4:36026529-36026548 | MS.gene41220:CDS | 35.0% |
| !! | TGAACTATTTCTGAACTACC+AGG | - | chr1.4:36025317-36025336 | None:intergenic | 35.0% |
| !!! | GTGGTTTCTGAAACATTTTC+TGG | - | chr1.4:36024431-36024450 | None:intergenic | 35.0% |
| !!! | TGCTATTTCGTCGCATATTT+TGG | + | chr1.4:36025494-36025513 | MS.gene41220:CDS | 35.0% |
| !!! | TTGCTGCCTTTTTTAACTAC+AGG | - | chr1.4:36026025-36026044 | None:intergenic | 35.0% |
| !!! | TTTTTCTGGTTTTTCCGTGA+TGG | - | chr1.4:36026832-36026851 | None:intergenic | 35.0% |
| AACACTATCCGAGTTTCCTA+CGG | + | chr1.4:36025826-36025845 | MS.gene41220:CDS | 40.0% | |
| AAGATATGAGCGACACGTAT+TGG | + | chr1.4:36026698-36026717 | MS.gene41220:CDS | 40.0% | |
| AAGTTCATAACAAGCTCAGC+AGG | - | chr1.4:36027033-36027052 | None:intergenic | 40.0% | |
| AATCACACTGAGGAGGTTAA+AGG | + | chr1.4:36024971-36024990 | MS.gene41220:CDS | 40.0% | |
| AATCGGTGATTGTATTCGTC+GGG | + | chr1.4:36026303-36026322 | MS.gene41220:CDS | 40.0% | |
| ACACTCAAGTTACTGACCAA+GGG | + | chr1.4:36025156-36025175 | MS.gene41220:CDS | 40.0% | |
| ACATATCACAGACCCATCTA+GGG | - | chr1.4:36024486-36024505 | None:intergenic | 40.0% | |
| ACCAGCAATTTGCACATCAT+GGG | - | chr1.4:36024459-36024478 | None:intergenic | 40.0% | |
| AGAGATCGAAAACCATTTCC+TGG | - | chr1.4:36027314-36027333 | None:intergenic | 40.0% | |
| AGGATGTCAGACCTAATGAA+TGG | + | chr1.4:36026103-36026122 | MS.gene41220:CDS | 40.0% | |
| ATCTTGCATTTCGGAGTCAT+CGG | - | chr1.4:36026227-36026246 | None:intergenic | 40.0% | |
| ATGACTCCGAAATGCAAGAT+GGG | + | chr1.4:36026227-36026246 | MS.gene41220:CDS | 40.0% | |
| CACCTGAACATTCCAAGAAA+AGG | + | chr1.4:36026176-36026195 | MS.gene41220:CDS | 40.0% | |
| CACTTGGAGTGTAATTAAGC+TGG | - | chr1.4:36027254-36027273 | None:intergenic | 40.0% | |
| CCAGAAATACAACATTGTGG+AGG | + | chr1.4:36025929-36025948 | MS.gene41220:CDS | 40.0% | |
| CCTCCACAATGTTGTATTTC+TGG | - | chr1.4:36025932-36025951 | None:intergenic | 40.0% | |
| GATTTGTGGTGATTCTGTTG+GGG | + | chr1.4:36024523-36024542 | MS.gene41220:CDS | 40.0% | |
| GGATGTCAGACCTAATGAAT+GGG | + | chr1.4:36026104-36026123 | MS.gene41220:CDS | 40.0% | |
| TAAGGGAACAGAATTGAGCT+CGG | - | chr1.4:36027058-36027077 | None:intergenic | 40.0% | |
| TAGATGGGTCTGTGATATGT+GGG | + | chr1.4:36024486-36024505 | MS.gene41220:CDS | 40.0% | |
| TCAGGTGAAACCAGATTATC+TGG | - | chr1.4:36026163-36026182 | None:intergenic | 40.0% | |
| TCTCAAGACGAGTCGAATAT+GGG | + | chr1.4:36025645-36025664 | MS.gene41220:CDS | 40.0% | |
| TCTCTCTCAGATATGGTTTG+GGG | + | chr1.4:36025383-36025402 | MS.gene41220:CDS | 40.0% | |
| TGAAACAGTGAATCACACTG+AGG | + | chr1.4:36024961-36024980 | MS.gene41220:CDS | 40.0% | |
| TTGGGGACAAAACATTTGCA+TGG | + | chr1.4:36025513-36025532 | MS.gene41220:CDS | 40.0% | |
| ! | AATCTGGAGTCCCATTCATT+AGG | - | chr1.4:36026117-36026136 | None:intergenic | 40.0% |
| ! | AGCAATGATGATGCTTTAGC+AGG | + | chr1.4:36024764-36024783 | MS.gene41220:CDS | 40.0% |
| ! | CCTTGAAAAGTGCAACTCAA+AGG | + | chr1.4:36024823-36024842 | MS.gene41220:CDS | 40.0% |
| ! | CGAGTTTTCTCTCTCAGATA+TGG | + | chr1.4:36025376-36025395 | MS.gene41220:CDS | 40.0% |
| ! | CTCCTTTTCTTGGAATGTTC+AGG | - | chr1.4:36026181-36026200 | None:intergenic | 40.0% |
| ! | CTTCACAAGTGCATGTTTTC+CGG | - | chr1.4:36025294-36025313 | None:intergenic | 40.0% |
| ! | CTTTAGCAGGTAGTTCTGTA+GGG | + | chr1.4:36024777-36024796 | MS.gene41220:CDS | 40.0% |
| ! | GTGATTTGTGGTGATTCTGT+TGG | + | chr1.4:36024521-36024540 | MS.gene41220:CDS | 40.0% |
| ! | TCTCCACAATTGAAGAGCAT+AGG | + | chr1.4:36025573-36025592 | MS.gene41220:CDS | 40.0% |
| ! | TTTAGCAGGTAGTTCTGTAG+GGG | + | chr1.4:36024778-36024797 | MS.gene41220:CDS | 40.0% |
| !! | AAGTTGATAGAGTAAGCAGC+CGG | + | chr1.4:36027136-36027155 | MS.gene41220:CDS | 40.0% |
| !! | TAAGCGTTTTGGACCACTTA+AGG | + | chr1.4:36027101-36027120 | MS.gene41220:CDS | 40.0% |
| !!! | CCTTTGAGTTGCACTTTTCA+AGG | - | chr1.4:36024826-36024845 | None:intergenic | 40.0% |
| !!! | CTGGTTGTTCGTCTTTTTTC+TGG | - | chr1.4:36026846-36026865 | None:intergenic | 40.0% |
| AAACATGCACTTGTGAAGCC+TGG | + | chr1.4:36025296-36025315 | MS.gene41220:CDS | 45.0% | |
| AAACCCCCAATAGTTGGAAC+TGG | + | chr1.4:36026652-36026671 | MS.gene41220:CDS | 45.0% | |
| AACAGTGAATCACACTGAGG+AGG | + | chr1.4:36024964-36024983 | MS.gene41220:CDS | 45.0% | |
| AACCAGTGCAACAACCATCA+CGG | + | chr1.4:36026815-36026834 | MS.gene41220:CDS | 45.0% | |
| AACCCCCAATAGTTGGAACT+GGG | + | chr1.4:36026653-36026672 | MS.gene41220:CDS | 45.0% | |
| AATGCAGCGGAAGTTGAGTT+GGG | + | chr1.4:36024614-36024633 | MS.gene41220:CDS | 45.0% | |
| ACAACCCTAGATTCCTCAAC+CGG | - | chr1.4:36024569-36024588 | None:intergenic | 45.0% | |
| ACCCATGATGTGCAAATTGC+TGG | + | chr1.4:36024455-36024474 | MS.gene41220:CDS | 45.0% | |
| ACTGACAGGGTCATTGACAA+TGG | + | chr1.4:36026721-36026740 | MS.gene41220:CDS | 45.0% | |
| AGATGGGTCTGTGATATGTG+GGG | + | chr1.4:36024487-36024506 | MS.gene41220:CDS | 45.0% | |
| AGATTCCTCAACCGGATACT+CGG | - | chr1.4:36024561-36024580 | None:intergenic | 45.0% | |
| AGGAAGAAACCCCCAATAGT+TGG | + | chr1.4:36026646-36026665 | MS.gene41220:CDS | 45.0% | |
| AGTATCCGGTTGAGGAATCT+AGG | + | chr1.4:36024561-36024580 | MS.gene41220:CDS | 45.0% | |
| AGTCAGACAGTAGAGAACAC+CGG | + | chr1.4:36025713-36025732 | MS.gene41220:CDS | 45.0% | |
| ATAGCTGACAACGATGTGAG+CGG | + | chr1.4:36024854-36024873 | MS.gene41220:CDS | 45.0% | |
| ATTCTGTTGGGGTAGTTGGT+GGG | + | chr1.4:36024534-36024553 | MS.gene41220:CDS | 45.0% | |
| ATTGCTGGTGAAACCCTAGA+TGG | + | chr1.4:36024470-36024489 | MS.gene41220:CDS | 45.0% | |
| CACATATCACAGACCCATCT+AGG | - | chr1.4:36024487-36024506 | None:intergenic | 45.0% | |
| CACCAGCAATTTGCACATCA+TGG | - | chr1.4:36024460-36024479 | None:intergenic | 45.0% | |
| CACTGTGCATCCATCAAAGA+AGG | + | chr1.4:36026075-36026094 | MS.gene41220:CDS | 45.0% | |
| CCTGATCATCCTCATCAGTT+GGG | - | chr1.4:36026441-36026460 | None:intergenic | 45.0% | |
| CTAGATGGGTCTGTGATATG+TGG | + | chr1.4:36024485-36024504 | MS.gene41220:CDS | 45.0% | |
| GACACTCAAGTTACTGACCA+AGG | + | chr1.4:36025155-36025174 | MS.gene41220:CDS | 45.0% | |
| GATGACTCCGAAATGCAAGA+TGG | + | chr1.4:36026226-36026245 | MS.gene41220:CDS | 45.0% | |
| GCTATCTTCACTTCAGCTTG+TGG | + | chr1.4:36026492-36026511 | MS.gene41220:CDS | 45.0% | |
| GTATCCGGTTGAGGAATCTA+GGG | + | chr1.4:36024562-36024581 | MS.gene41220:CDS | 45.0% | |
| GTCTCAAGACGAGTCGAATA+TGG | + | chr1.4:36025644-36025663 | MS.gene41220:CDS | 45.0% | |
| GTGACCCAGTTCCAACTATT+GGG | - | chr1.4:36026660-36026679 | None:intergenic | 45.0% | |
| GTGAGAGATGAAGCAGTAGT+TGG | + | chr1.4:36024659-36024678 | MS.gene41220:CDS | 45.0% | |
| TATCTTGTGATCTGCAGCCT+CGG | - | chr1.4:36024735-36024754 | None:intergenic | 45.0% | |
| TCAAAGTCTCCATCTGCCTT+TGG | - | chr1.4:36026385-36026404 | None:intergenic | 45.0% | |
| TCACTGCGTCACCTTCTATA+AGG | + | chr1.4:36026338-36026357 | MS.gene41220:CDS | 45.0% | |
| TCCTGATCATCCTCATCAGT+TGG | - | chr1.4:36026442-36026461 | None:intergenic | 45.0% | |
| TCTTAAAGACCACTCTTGCC+CGG | - | chr1.4:36027158-36027177 | None:intergenic | 45.0% | |
| TGACCCAGTTCCAACTATTG+GGG | - | chr1.4:36026659-36026678 | None:intergenic | 45.0% | |
| TGCAACACAAGACCAGGAAA+TGG | + | chr1.4:36027299-36027318 | MS.gene41220:CDS | 45.0% | |
| TGTTGATGCAACACAAGACC+AGG | + | chr1.4:36027293-36027312 | MS.gene41220:CDS | 45.0% | |
| TTCTAGTGACCGATCTCCAA+AGG | + | chr1.4:36026366-36026385 | MS.gene41220:CDS | 45.0% | |
| TTCTGTTGTTGCAGGTTCGT+CGG | + | chr1.4:36025082-36025101 | MS.gene41220:intron | 45.0% | |
| TTGCTGGTGAAACCCTAGAT+GGG | + | chr1.4:36024471-36024490 | MS.gene41220:CDS | 45.0% | |
| ! | GCTTGTAGTTCTGTTGTTGC+AGG | + | chr1.4:36025074-36025093 | MS.gene41220:intron | 45.0% |
| ! | GCTTTAGCAGGTAGTTCTGT+AGG | + | chr1.4:36024776-36024795 | MS.gene41220:CDS | 45.0% |
| ! | GTCAACAAGGTGTCAAATGG+TGG | + | chr1.4:36025212-36025231 | MS.gene41220:CDS | 45.0% |
| ! | TTTGGAGCTTGTGACTGCTA+AGG | + | chr1.4:36025862-36025881 | MS.gene41220:CDS | 45.0% |
| ! | TTTGGTGACTTAGCAGAGAC+TGG | - | chr1.4:36026865-36026884 | None:intergenic | 45.0% |
| ! | TTTTCCTTTCCATCGCGCAA+CGG | - | chr1.4:36025191-36025210 | None:intergenic | 45.0% |
| !! | AGTTGATAGAGTAAGCAGCC+GGG | + | chr1.4:36027137-36027156 | MS.gene41220:CDS | 45.0% |
| !! | ATTCTCCTGATGGTGATGGT+CGG | + | chr1.4:36026134-36026153 | MS.gene41220:CDS | 45.0% |
| !! | GAAGCTTTGAACAGTGCACT+TGG | - | chr1.4:36027270-36027289 | None:intergenic | 45.0% |
| !! | GAGTTGGGTAGCGTTGTTTT+GGG | + | chr1.4:36024629-36024648 | MS.gene41220:CDS | 45.0% |
| !! | TGAGTTGGGTAGCGTTGTTT+TGG | + | chr1.4:36024628-36024647 | MS.gene41220:CDS | 45.0% |
| !!! | TGCACTGGTTTTTGTTGCAC+TGG | - | chr1.4:36026805-36026824 | None:intergenic | 45.0% |
| AAACGATCAAAGCCAGCCGT+AGG | - | chr1.4:36025845-36025864 | None:intergenic | 50.0% | |
| AAAGCCAGCCGTAGGAAACT+CGG | - | chr1.4:36025837-36025856 | None:intergenic | 50.0% | |
| AAGTGAGAAGTCACCCATGG+TGG | + | chr1.4:36025408-36025427 | MS.gene41220:CDS | 50.0% | |
| ATCCGTCAGATGCATCTGAG+AGG | + | chr1.4:36025447-36025466 | MS.gene41220:CDS | 50.0% | |
| ATTTCGGAGTCATCGGCGTA+GGG | - | chr1.4:36026220-36026239 | None:intergenic | 50.0% | |
| CCATCACCATCAGGAGAATC+TGG | - | chr1.4:36026133-36026152 | None:intergenic | 50.0% | |
| CCCAACTGATGAGGATGATC+AGG | + | chr1.4:36026438-36026457 | MS.gene41220:CDS | 50.0% | |
| CGACACGTATTGGACTGACA+GGG | + | chr1.4:36026708-36026727 | MS.gene41220:CDS | 50.0% | |
| CTGTAGTTGTGGCTGCTGAT+TGG | + | chr1.4:36026587-36026606 | MS.gene41220:CDS | 50.0% | |
| GAATGCAGCGGAAGTTGAGT+TGG | + | chr1.4:36024613-36024632 | MS.gene41220:CDS | 50.0% | |
| GACCCAGTTCCAACTATTGG+GGG | - | chr1.4:36026658-36026677 | None:intergenic | 50.0% | |
| GACGGATCAAATATCTGCCC+AGG | - | chr1.4:36025434-36025453 | None:intergenic | 50.0% | |
| GATGGGTCTGTGATATGTGG+GGG | + | chr1.4:36024488-36024507 | MS.gene41220:CDS | 50.0% | |
| GATTCTGTTGGGGTAGTTGG+TGG | + | chr1.4:36024533-36024552 | MS.gene41220:CDS | 50.0% | |
| GCAAAGTGAGAAGTCACCCA+TGG | + | chr1.4:36025405-36025424 | MS.gene41220:CDS | 50.0% | |
| GGTGACCCAGTTCCAACTAT+TGG | - | chr1.4:36026661-36026680 | None:intergenic | 50.0% | |
| GGTGATTCTGTTGGGGTAGT+TGG | + | chr1.4:36024530-36024549 | MS.gene41220:CDS | 50.0% | |
| GTCAGACAGTAGAGAACACC+GGG | + | chr1.4:36025714-36025733 | MS.gene41220:CDS | 50.0% | |
| TCAGACAGTAGAGAACACCG+GGG | + | chr1.4:36025715-36025734 | MS.gene41220:CDS | 50.0% | |
| TCCGTCAGATGCATCTGAGA+GGG | + | chr1.4:36025448-36025467 | MS.gene41220:CDS | 50.0% | |
| TGGTCGGACTCCAGATAATC+TGG | + | chr1.4:36026150-36026169 | MS.gene41220:CDS | 50.0% | |
| TGTGTCTCTCCCAACTGATG+AGG | + | chr1.4:36026429-36026448 | MS.gene41220:CDS | 50.0% | |
| TTCCGTGATGGTTGTTGCAC+TGG | - | chr1.4:36026820-36026839 | None:intergenic | 50.0% | |
| TTGCACATCATGGGTCACAG+TGG | - | chr1.4:36024450-36024469 | None:intergenic | 50.0% | |
| ! | AGCGCTCTTGCTCCTTTTCT+TGG | - | chr1.4:36026191-36026210 | None:intergenic | 50.0% |
| ! | CAAGGTGTCAAATGGTGGTC+AGG | + | chr1.4:36025217-36025236 | MS.gene41220:CDS | 50.0% |
| ! | CCAGATTCTCCTGATGGTGA+TGG | + | chr1.4:36026130-36026149 | MS.gene41220:CDS | 50.0% |
| ! | CTCCATCTGCCTTTGGAGAT+CGG | - | chr1.4:36026378-36026397 | None:intergenic | 50.0% |
| ! | GGCTTACGATTAACTTGGGC+TGG | - | chr1.4:36026931-36026950 | None:intergenic | 50.0% |
| ! | GGCTTTGGTGACTTAACAGC+TGG | - | chr1.4:36026889-36026908 | None:intergenic | 50.0% |
| ! | GGTGACTTAACAGCTGGCTT+TGG | - | chr1.4:36026883-36026902 | None:intergenic | 50.0% |
| ! | GTCGGTGTCTATTGAGACTG+AGG | + | chr1.4:36025100-36025119 | MS.gene41220:CDS | 50.0% |
| ! | TGTGAGCGGTGTTTCTGCTT+TGG | + | chr1.4:36024868-36024887 | MS.gene41220:CDS | 50.0% |
| ! | TTCTGAAAGCAATCCTGCCG+AGG | + | chr1.4:36026969-36026988 | MS.gene41220:CDS | 50.0% |
| !! | ACATTGTGGAGGTGTTGACC+CGG | + | chr1.4:36025940-36025959 | MS.gene41220:CDS | 50.0% |
| !! | CGATTAACTTGGGCTGGCTT+TGG | - | chr1.4:36026925-36026944 | None:intergenic | 50.0% |
| !! | TACGGCTGGCTTTGATCGTT+TGG | + | chr1.4:36025844-36025863 | MS.gene41220:CDS | 50.0% |
| !! | TGCACTGGTTTCTGTTGCAC+TGG | - | chr1.4:36026775-36026794 | None:intergenic | 50.0% |
| !!! | TGGGTAGCGTTGTTTTGGGA+GGG | + | chr1.4:36024633-36024652 | MS.gene41220:CDS | 50.0% |
| !!! | TTGGGTAGCGTTGTTTTGGG+AGG | + | chr1.4:36024632-36024651 | MS.gene41220:CDS | 50.0% |
| AATATCTGCCCAGGCCACCA+TGG | - | chr1.4:36025425-36025444 | None:intergenic | 55.0% | |
| ATATCTGCCCAGGCCACCAT+GGG | - | chr1.4:36025424-36025443 | None:intergenic | 55.0% | |
| CATTTCGGAGTCATCGGCGT+AGG | - | chr1.4:36026221-36026240 | None:intergenic | 55.0% | |
| CTATCCGAGTTTCCTACGGC+TGG | + | chr1.4:36025830-36025849 | MS.gene41220:CDS | 55.0% | |
| CTTGTGGCACAAGAACCCCT+TGG | + | chr1.4:36026508-36026527 | MS.gene41220:CDS | 55.0% | |
| GACCGATCTCCAAAGGCAGA+TGG | + | chr1.4:36026373-36026392 | MS.gene41220:CDS | 55.0% | |
| GCCCTCTCAGATGCATCTGA+CGG | - | chr1.4:36025452-36025471 | None:intergenic | 55.0% | |
| GCGACACGTATTGGACTGAC+AGG | + | chr1.4:36026707-36026726 | MS.gene41220:CDS | 55.0% | |
| GGGACTCCAGATTCTCCTGA+TGG | + | chr1.4:36026124-36026143 | MS.gene41220:CDS | 55.0% | |
| TTCCGCTGCATTCTCACTCC+CGG | - | chr1.4:36024606-36024625 | None:intergenic | 55.0% | |
| ! | GGCTTTGGTGACTTGGAAGC+TGG | - | chr1.4:36026910-36026929 | None:intergenic | 55.0% |
| ! | GGTGACTTGGAAGCTGGCTT+TGG | - | chr1.4:36026904-36026923 | None:intergenic | 55.0% |
| !! | AGTTGGTGGGACCGAGTATC+CGG | + | chr1.4:36024547-36024566 | MS.gene41220:CDS | 55.0% |
| !! | CAATATGGTGGATGCTGCCG+AGG | + | chr1.4:36024715-36024734 | MS.gene41220:CDS | 55.0% |
| !! | TGCACTGGTTTCTGTTGCGC+TGG | - | chr1.4:36026760-36026779 | None:intergenic | 55.0% |
| !! | TTGGGCTGGCTTTGGTGACT+TGG | - | chr1.4:36026917-36026936 | None:intergenic | 55.0% |
| !!! | AGGAGGTTTTTCGGGAGCCT+CGG | - | chr1.4:36026989-36027008 | None:intergenic | 55.0% |
| !!! | GGGTAGCGTTGTTTTGGGAG+GGG | + | chr1.4:36024634-36024653 | MS.gene41220:CDS | 55.0% |
| AGAAGTCACCCATGGTGGCC+TGG | + | chr1.4:36025413-36025432 | MS.gene41220:CDS | 60.0% | |
| AGCCGGGAGTGAGAATGCAG+CGG | + | chr1.4:36024601-36024620 | MS.gene41220:CDS | 60.0% | |
| AGTAAGCAGCCGGGCAAGAG+TGG | + | chr1.4:36027146-36027165 | MS.gene41220:CDS | 60.0% | |
| GAAGTCACCCATGGTGGCCT+GGG | + | chr1.4:36025414-36025433 | MS.gene41220:CDS | 60.0% | |
| GAGGCTCCCGAAAAACCTCC+TGG | + | chr1.4:36026988-36027007 | MS.gene41220:CDS | 60.0% | |
| GGAGTCCGACCATCACCATC+AGG | - | chr1.4:36026142-36026161 | None:intergenic | 60.0% | |
| TGCACCGTTGCGCGATGGAA+AGG | + | chr1.4:36025184-36025203 | MS.gene41220:CDS | 60.0% | |
| TGGGACCGAGTATCCGGTTG+AGG | + | chr1.4:36024553-36024572 | MS.gene41220:CDS | 60.0% | |
| TTCCATCGCGCAACGGTGCA+TGG | - | chr1.4:36025184-36025203 | None:intergenic | 60.0% | |
| AGCCATGCACCGTTGCGCGA+TGG | + | chr1.4:36025179-36025198 | MS.gene41220:CDS | 65.0% | |
| GCAACGGTGCATGGCTCCCT+TGG | - | chr1.4:36025175-36025194 | None:intergenic | 65.0% | |
| !!! | GGTTTTTCGGGAGCCTCGGC+AGG | - | chr1.4:36026985-36027004 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 36024419 | 36027359 | 36024419 | ID=MS.gene41220 |
| chr1.4 | mRNA | 36024419 | 36027359 | 36024419 | ID=MS.gene41220.t1;Parent=MS.gene41220 |
| chr1.4 | exon | 36024419 | 36024992 | 36024419 | ID=MS.gene41220.t1.exon1;Parent=MS.gene41220.t1 |
| chr1.4 | CDS | 36024419 | 36024992 | 36024419 | ID=cds.MS.gene41220.t1;Parent=MS.gene41220.t1 |
| chr1.4 | exon | 36025096 | 36027359 | 36025096 | ID=MS.gene41220.t1.exon2;Parent=MS.gene41220.t1 |
| chr1.4 | CDS | 36025096 | 36027359 | 36025096 | ID=cds.MS.gene41220.t1;Parent=MS.gene41220.t1 |
| Gene Sequence |
| Protein sequence |
