Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55120.t1 | XP_003595057.1 | 92.9 | 396 | 27 | 1 | 1 | 396 | 18 | 412 | 1.00E-201 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55120.t1 | O14086 | 24.9 | 433 | 263 | 15 | 12 | 407 | 17 | 424 | 2.2e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55120.t1 | B7FK61 | 92.9 | 396 | 27 | 1 | 1 | 396 | 18 | 412 | 7.6e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050577 | MS.gene55120 | -0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene55120 | -0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene55120 | -0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene55120 | -0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene55120 | -0.804986 | 1.66E-49 | -1.69E-46 |
| MS.gene053421 | MS.gene55120 | 0.834881 | 2.32E-56 | -1.69E-46 |
| MS.gene054706 | MS.gene55120 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene055629 | MS.gene55120 | -0.820898 | 5.38E-53 | -1.69E-46 |
| MS.gene056040 | MS.gene55120 | -0.810474 | 1.13E-50 | -1.69E-46 |
| MS.gene056647 | MS.gene55120 | 0.822284 | 2.57E-53 | -1.69E-46 |
| MS.gene057173 | MS.gene55120 | 0.827685 | 1.36E-54 | -1.69E-46 |
| MS.gene05726 | MS.gene55120 | 0.811751 | 5.99E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene55120 | -0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene55120 | -0.832869 | 7.39E-56 | -1.69E-46 |
| MS.gene058170 | MS.gene55120 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene55120 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene55120 | -0.816398 | 5.65E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55120.t1 | MTR_7g104810 | 89.877 | 405 | 39 | 2 | 1 | 404 | 18 | 421 | 0.0 | 747 |
| MS.gene55120.t1 | MTR_2g037880 | 93.523 | 386 | 25 | 0 | 16 | 401 | 32 | 417 | 0.0 | 745 |
| MS.gene55120.t1 | MTR_2g037460 | 87.310 | 394 | 44 | 3 | 8 | 401 | 21 | 408 | 0.0 | 691 |
| MS.gene55120.t1 | MTR_2g037460 | 82.712 | 295 | 51 | 0 | 107 | 401 | 27 | 321 | 7.05e-177 | 496 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55120.t1 | AT3G13940 | 42.928 | 403 | 214 | 5 | 15 | 408 | 46 | 441 | 2.62e-107 | 323 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATAAATGGAGGCATTT+TGG | 0.129418 | 2.2:-49799332 | None:intergenic |
| TCCAAAATGCCTCCATTTAT+TGG | 0.146296 | 2.2:+49799331 | MS.gene55120:CDS |
| TCTTCTCATTTCTTATGTTT+TGG | 0.220456 | 2.2:+49806333 | MS.gene55120:CDS |
| GAGCTTGTTGTCAGCCCAGC+TGG | 0.283698 | 2.2:+49799442 | MS.gene55120:CDS |
| GAAGTAAAATAACCAATAAA+TGG | 0.304477 | 2.2:-49799343 | None:intergenic |
| GAGACCAATCTTTGAGCATT+TGG | 0.312932 | 2.2:+49806435 | MS.gene55120:CDS |
| AGATTGGAACCAAGAGTTAA+AGG | 0.317783 | 2.2:+49799821 | MS.gene55120:CDS |
| GCGAAAGGCTGATGCTGCTT+GGG | 0.333572 | 2.2:+49799922 | MS.gene55120:CDS |
| AGTTAAAGGTGTGGAATATA+AGG | 0.339115 | 2.2:+49799835 | MS.gene55120:CDS |
| AAGAATTATATGGTGGTATA+TGG | 0.343973 | 2.2:-49804699 | None:intergenic |
| TGTGCCTATTGGTGGTAATA+AGG | 0.347576 | 2.2:+49799579 | MS.gene55120:CDS |
| GAGATATAGCAAAGGATCTA+AGG | 0.349870 | 2.2:+49806395 | MS.gene55120:CDS |
| AGACCAATCTTTGAGCATTT+GGG | 0.365817 | 2.2:+49806436 | MS.gene55120:CDS |
| GGTTCATGATGAACCGGTTC+AGG | 0.373798 | 2.2:-49799271 | None:intergenic |
| AACTATAATAAATGTCTTGA+AGG | 0.390558 | 2.2:-49804786 | None:intergenic |
| TGCTGAACCACCACCTGAAC+CGG | 0.393092 | 2.2:+49799258 | MS.gene55120:CDS |
| CAACCCAAATGCTCAAAGAT+TGG | 0.402582 | 2.2:-49806439 | None:intergenic |
| GGGTCCTCGGTTGAATTTGT+TGG | 0.421078 | 2.2:+49799463 | MS.gene55120:CDS |
| GTACTGGAAGAGCTCTTAAC+AGG | 0.421801 | 2.2:-49799376 | None:intergenic |
| GTATTATTCTGCAGAATCTC+AGG | 0.424626 | 2.2:+49804560 | MS.gene55120:intron |
| ACTTCAATCTTAGCTTGAAC+CGG | 0.428963 | 2.2:-49799292 | None:intergenic |
| ACGCTTAAGATTGTGCCTAT+TGG | 0.430669 | 2.2:+49799568 | MS.gene55120:CDS |
| TTTACCTTATTACCACCAAT+AGG | 0.435713 | 2.2:-49799583 | None:intergenic |
| TATTCCACACCTTTAACTCT+TGG | 0.435788 | 2.2:-49799830 | None:intergenic |
| AGCGAAAGGCTGATGCTGCT+TGG | 0.440637 | 2.2:+49799921 | MS.gene55120:CDS |
| AAAACAAGGTTAAGCATAAG+AGG | 0.441957 | 2.2:+49799416 | MS.gene55120:CDS |
| GTAGTTGCAGAAGAATTATA+TGG | 0.442434 | 2.2:-49804709 | None:intergenic |
| TGAGGGTGAGGCTGCGGCAG+CGG | 0.445687 | 2.2:+49799495 | MS.gene55120:CDS |
| AGCTTGTTGTCAGCCCAGCT+GGG | 0.450223 | 2.2:+49799443 | MS.gene55120:CDS |
| AAATCATCCTTGCAGAAGAA+TGG | 0.451465 | 2.2:+49804758 | MS.gene55120:CDS |
| TGATGAACCGGTTCAGGTGG+TGG | 0.453495 | 2.2:-49799265 | None:intergenic |
| ATACACTTGAACATCGGTAC+TGG | 0.468036 | 2.2:-49799392 | None:intergenic |
| TGTCAGCCCAGCTGGGTCCT+CGG | 0.477176 | 2.2:+49799450 | MS.gene55120:CDS |
| ACCTCAGGAGGCTTATGTCT+TGG | 0.480748 | 2.2:+49804732 | MS.gene55120:CDS |
| TATGCTTGGTGTGTTTGATA+AGG | 0.485423 | 2.2:+49799537 | MS.gene55120:CDS |
| TGAGAAAATGTAAGTGGGAT+AGG | 0.487002 | 2.2:-49806502 | None:intergenic |
| ATCCTGTTGCGAATAAAAGA+TGG | 0.494748 | 2.2:-49804844 | None:intergenic |
| CTTAAGATTGTGCCTATTGG+TGG | 0.495213 | 2.2:+49799571 | MS.gene55120:CDS |
| TGAACCGGTTCATGATGAAC+CGG | 0.495519 | 2.2:-49799277 | None:intergenic |
| ATTTGTTGGAACGAGTTATG+AGG | 0.500198 | 2.2:+49799477 | MS.gene55120:CDS |
| ATCTTAGTCGGAGTCGGAGG+CGG | 0.502830 | 2.2:-49799860 | None:intergenic |
| CATTTATTATAGTTTGCAAA+AGG | 0.504652 | 2.2:+49804795 | MS.gene55120:CDS |
| AACAAAGAGGTCAAATAAGA+TGG | 0.507292 | 2.2:+49799946 | MS.gene55120:CDS |
| CTTATCTGAGAAAATGTAAG+TGG | 0.510371 | 2.2:-49806508 | None:intergenic |
| TCCGACTAAGATGGTGGAAG+AGG | 0.511793 | 2.2:+49799871 | MS.gene55120:CDS |
| GATGGTGGAAGAGGTGACTA+AGG | 0.512206 | 2.2:+49799880 | MS.gene55120:CDS |
| AATTCAACCGAGGACCCAGC+TGG | 0.513114 | 2.2:-49799457 | None:intergenic |
| CAAATTGATATCCTCTCAGA+AGG | 0.517620 | 2.2:+49806462 | MS.gene55120:CDS |
| AATCTATGATGCAGAATGTA+GGG | 0.518102 | 2.2:-49806256 | None:intergenic |
| TTCTTCTGCAACTACACCTC+AGG | 0.520240 | 2.2:+49804717 | MS.gene55120:CDS |
| AAATCTATGATGCAGAATGT+AGG | 0.522205 | 2.2:-49806257 | None:intergenic |
| TGTTGTGTAGATATTCAGAT+TGG | 0.525670 | 2.2:+49799805 | MS.gene55120:intron |
| GAGTTATGAGGGTGAGGCTG+CGG | 0.536928 | 2.2:+49799489 | MS.gene55120:CDS |
| CTCAGATAAGGCAAAAGAAG+AGG | 0.539369 | 2.2:+49806521 | MS.gene55120:CDS |
| TGAACCGGTTCATCATGAAC+CGG | 0.544463 | 2.2:+49799273 | MS.gene55120:CDS |
| TCCACCATCTTAGTCGGAGT+CGG | 0.545273 | 2.2:-49799866 | None:intergenic |
| CTTTGCTATATCTCTGTAGT+CGG | 0.547735 | 2.2:-49806386 | None:intergenic |
| ACACCAAGCATATAAGTCGC+AGG | 0.556630 | 2.2:-49799526 | None:intergenic |
| TGAAGAGGAAATACCATCCA+TGG | 0.557476 | 2.2:-49806218 | None:intergenic |
| AACCCTGCGACTTATATGCT+TGG | 0.561621 | 2.2:+49799523 | MS.gene55120:CDS |
| CGAAAGGCTGATGCTGCTTG+GGG | 0.563946 | 2.2:+49799923 | MS.gene55120:CDS |
| GTTCAAAGATCAGCACTCCA+TGG | 0.575034 | 2.2:+49806201 | MS.gene55120:CDS |
| AAACAGATTAAAGAAGATTG+AGG | 0.581502 | 2.2:+49804867 | MS.gene55120:CDS |
| GGTAATTCCATTCTTCTGCA+AGG | 0.583538 | 2.2:-49804765 | None:intergenic |
| TTTGTTGGAACGAGTTATGA+GGG | 0.588890 | 2.2:+49799478 | MS.gene55120:CDS |
| ACCTCTTCCACCATCTTAGT+CGG | 0.591205 | 2.2:-49799872 | None:intergenic |
| GATTGGTCTCAGCGCTAGTG+TGG | 0.591862 | 2.2:-49806422 | None:intergenic |
| AAAGATCAGCACTCCATGGA+TGG | 0.593884 | 2.2:+49806205 | MS.gene55120:CDS |
| AAGTTTCTCGAACTTTGAAG+AGG | 0.595680 | 2.2:-49806233 | None:intergenic |
| GCCTCCGACTCCGACTAAGA+TGG | 0.600213 | 2.2:+49799862 | MS.gene55120:CDS |
| TGGGATAGGAAGTATTGCAT+AGG | 0.601124 | 2.2:-49806488 | None:intergenic |
| TCATGATGAACCGGTTCAGG+TGG | 0.607542 | 2.2:-49799268 | None:intergenic |
| CTCAGGCTTAATGATATGAG+AGG | 0.609880 | 2.2:+49804577 | MS.gene55120:CDS |
| ATTCAACCGAGGACCCAGCT+GGG | 0.613198 | 2.2:-49799456 | None:intergenic |
| TTCTGCAACTACACCTCAGG+AGG | 0.613563 | 2.2:+49804720 | MS.gene55120:CDS |
| GTAAAATAACCAATAAATGG+AGG | 0.615691 | 2.2:-49799340 | None:intergenic |
| TCCGACTCCGACTAAGATGG+TGG | 0.626235 | 2.2:+49799865 | MS.gene55120:CDS |
| ACCATCTTAGTCGGAGTCGG+AGG | 0.628691 | 2.2:-49799863 | None:intergenic |
| TGGAACGAGTTATGAGGGTG+AGG | 0.630631 | 2.2:+49799483 | MS.gene55120:CDS |
| GTTGCAGAAGAATTATATGG+TGG | 0.631317 | 2.2:-49804706 | None:intergenic |
| TGTTCAAGTGTATCAAAACA+AGG | 0.640332 | 2.2:+49799402 | MS.gene55120:CDS |
| CACCAAGCATATAAGTCGCA+GGG | 0.640728 | 2.2:-49799525 | None:intergenic |
| TTATCTGAGAAAATGTAAGT+GGG | 0.650109 | 2.2:-49806507 | None:intergenic |
| TTGATGTTACTGAATCAAGA+AGG | 0.656759 | 2.2:+49806290 | MS.gene55120:CDS |
| CTATATCTCTGTAGTCGGTG+CGG | 0.662832 | 2.2:-49806381 | None:intergenic |
| TCCAAGACATAAGCCTCCTG+AGG | 0.674297 | 2.2:-49804733 | None:intergenic |
| ATGCTGCTTGGGGAACAAAG+AGG | 0.680630 | 2.2:+49799933 | MS.gene55120:CDS |
| GGAACCAAGAGTTAAAGGTG+TGG | 0.693403 | 2.2:+49799826 | MS.gene55120:CDS |
| AAGAGGTGACTAAGGAACAG+TGG | 0.693615 | 2.2:+49799888 | MS.gene55120:CDS |
| TGCATAGGAAACCTTCTGAG+AGG | 0.693774 | 2.2:-49806473 | None:intergenic |
| CGACTACAGAGATATAGCAA+AGG | 0.696422 | 2.2:+49806387 | MS.gene55120:CDS |
| GTGGACAGAGAAACAGCGAA+AGG | 0.702870 | 2.2:+49799907 | MS.gene55120:CDS |
| CGTTCCAACAAATTCAACCG+AGG | 0.725341 | 2.2:-49799467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 49799253 | 49806561 | 49799253 | ID=MS.gene55120 |
| chr2.2 | mRNA | 49799253 | 49806561 | 49799253 | ID=MS.gene55120.t1;Parent=MS.gene55120 |
| chr2.2 | exon | 49799253 | 49799600 | 49799253 | ID=MS.gene55120.t1.exon1;Parent=MS.gene55120.t1 |
| chr2.2 | CDS | 49799253 | 49799600 | 49799253 | ID=cds.MS.gene55120.t1;Parent=MS.gene55120.t1 |
| chr2.2 | exon | 49799815 | 49799967 | 49799815 | ID=MS.gene55120.t1.exon2;Parent=MS.gene55120.t1 |
| chr2.2 | CDS | 49799815 | 49799967 | 49799815 | ID=cds.MS.gene55120.t1;Parent=MS.gene55120.t1 |
| chr2.2 | exon | 49804574 | 49804888 | 49804574 | ID=MS.gene55120.t1.exon3;Parent=MS.gene55120.t1 |
| chr2.2 | CDS | 49804574 | 49804888 | 49804574 | ID=cds.MS.gene55120.t1;Parent=MS.gene55120.t1 |
| chr2.2 | exon | 49806142 | 49806561 | 49806142 | ID=MS.gene55120.t1.exon4;Parent=MS.gene55120.t1 |
| chr2.2 | CDS | 49806142 | 49806561 | 49806142 | ID=cds.MS.gene55120.t1;Parent=MS.gene55120.t1 |
| Gene Sequence |
| Protein sequence |