AlfalfaGEDB | MS.gene24697

M. sativa cultivar XinJiangDaYe / MS.gene24697

KEGG: K03005
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0110165 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF06870.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24697.t1	XP_003625839.2	93.3	401	27	0	8	408	29	429	2.20E-204	721.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24697.t1	O14086	24.4	430	264	13	11	404	21	425	1.1e-13	79.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24697.t1	G7KQW5	93.3	401	27	0	8	408	29	429	1.6e-204	721.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene003693	MS.gene24697	PPI
MS.gene004697	MS.gene24697	PPI
MS.gene013292	MS.gene24697	PPI
MS.gene014162	MS.gene24697	PPI
MS.gene015218	MS.gene24697	PPI
MS.gene022098	MS.gene24697	PPI
MS.gene035216	MS.gene24697	PPI
MS.gene04079	MS.gene24697	PPI
MS.gene04418	MS.gene24697	PPI
MS.gene04645	MS.gene24697	PPI

Showing 1 to 10 of 78 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24697.t1	MTR_7g104810	92.822	404	25	1	1	400	18	421	0.0	763
MS.gene24697.t1	MTR_2g037880	91.731	387	31	1	11	397	32	417	0.0	725
MS.gene24697.t1	MTR_2g037460	85.390	397	52	3	1	397	18	408	0.0	677
MS.gene24697.t1	MTR_2g037460	80.678	295	57	0	103	397	27	321	5.20e-170	479

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24697.t1	AT3G13940	42.402	408	212	5	10	405	46	442	2.84e-104	316

Showing 1 to 1 of 1 entries

Previous1Next

Find 92 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATTAAAGAAGATTG+AGG	0.581502	7.3:-9636931	MS.gene24697:intron
AAAGATCAGCACTCCATGGA+TGG	0.594590	7.3:-9635577	MS.gene24697:CDS
AAATCATCCTTGCAGACGAA+TGG	0.522781	7.3:-9637040	MS.gene24697:CDS
AAATCTATGATGCAGAGTGT+AGG	0.572007	7.3:+9635525	None:intergenic
AACAGAGAGGTCAAATCAGA+TGG	0.588787	7.3:-9639711	MS.gene24697:intron
AACCCCGCGACTTATATGCT+TGG	0.574276	7.3:-9640133	MS.gene24697:CDS
AACTATAATAAATGTCTTGA+AGG	0.390558	7.3:+9637012	None:intergenic
AAGAATTATATGGTGGTATA+TGG	0.343973	7.3:+9637099	None:intergenic
AAGAGATGACTGCGGAACAG+CGG	0.658743	7.3:-9639769	MS.gene24697:CDS
AAGTTTCTCGAACTTTGAAG+AGG	0.595680	7.3:+9635549	None:intergenic

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACATGACTGAACAGAATAAT+AGG	-	chr7.3:9636851-9636870	MS.gene24697:intron	30.0%
ACCTGAAGCTAAAAAGAATT+TGG	-	chr7.3:9638442-9638461	MS.gene24697:intron	30.0%
ACGATCTTCTGTCAATAATA+AGG	-	chr7.3:9639262-9639281	MS.gene24697:intron	30.0%
ACTGTAGAGTTCGTAATTAT+TGG	-	chr7.3:9638759-9638778	MS.gene24697:intron	30.0%
AGTTGACAAAATTAAGGTGT+TGG	-	chr7.3:9639318-9639337	MS.gene24697:intron	30.0%
ATAATAAGGTGGAGTCAATA+AGG	-	chr7.3:9639276-9639295	MS.gene24697:intron	30.0%
ATACAAGTTTATGGTTGGAT+TGG	-	chr7.3:9636248-9636267	MS.gene24697:intron	30.0%
ATATGCAAGTATAGTATCAC+CGG	+	chr7.3:9638828-9638847	None:intergenic	30.0%
ATCCTGTTGCAAATAAAAGA+TGG	+	chr7.3:9638680-9638699	None:intergenic	30.0%
ATCTTCTGTCAATAATAAGG+TGG	-	chr7.3:9639265-9639284	MS.gene24697:intron	30.0%

Showing 1 to 10 of 393 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	9635240	9640413	9635240	ID=MS.gene24697
chr7.3	mRNA	9635240	9640413	9635240	ID=MS.gene24697.t1;Parent=MS.gene24697
chr7.3	exon	9640078	9640413	9640078	ID=MS.gene24697.t1.exon1;Parent=MS.gene24697.t1
chr7.3	CDS	9640078	9640413	9640078	ID=cds.MS.gene24697.t1;Parent=MS.gene24697.t1
chr7.3	exon	9639712	9639864	9639712	ID=MS.gene24697.t1.exon2;Parent=MS.gene24697.t1
chr7.3	CDS	9639712	9639864	9639712	ID=cds.MS.gene24697.t1;Parent=MS.gene24697.t1
chr7.3	exon	9636932	9637246	9636932	ID=MS.gene24697.t1.exon3;Parent=MS.gene24697.t1
chr7.3	CDS	9636932	9637246	9636932	ID=cds.MS.gene24697.t1;Parent=MS.gene24697.t1
chr7.3	exon	9635240	9635662	9635240	ID=MS.gene24697.t1.exon4;Parent=MS.gene24697.t1
chr7.3	CDS	9635240	9635662	9635240	ID=cds.MS.gene24697.t1;Parent=MS.gene24697.t1

Gene Sequence

>MS.gene24697

ATGGATACTGAACCACCACCTGAACCGGTTCAGGCTAAGATTGAAGTTGTCAGTTCCGATCCAACCAAAATGCCTCCTTTTGTTGGTTATTTTACTTCTGGATTTGATCCAGTTAAGAGCTCTTCTGGTTCGACCGATGTTCAAGTATATCGAAACAAGGTTATGCATAAGAGGACTGAGCTTGTTGTCAGCCCAGCTGGGTCCTCGGTTGAATTTGTCGGAACGAGTTATGAGGGAGAGGCTGCGGCCGCGGCAAGAAACCCCGCGACTTATATGCTTGGTGTCTTCGATAAGGAATCTCAGACGCTTAAGATTGTGCCTATTGGTGGTAATAAGGTAAATTGTGAAGTAAAATGAAAAGGAAATAGCTGTGTTGATGATTTGGAATCACGGTGGGTGTGTCAGAATCATGGTGATCCGTTGTGATTTTACAAAGCTACAAAGCGTAGCTTTTGGAAAAACACGGTGGATCGCCATGATTCTTACATATCCACCGTGATACCAAACATACACTTGGCATGTTTGTGTTAATTTGTTGGTGTTGTGTAGATATTCAGATTGGAACCAAGAGTTAAAGGTGTGGAATATAAAGAGCCGCCTCCGACTCCGACTAAGATGGTGGAAGAGATGACTGCGGAACAGCGGACACAGCAAAAGCGAAAGGCTGTTGCTGCTTTGGGAACAGAGAGGTCAAATCAGATGGTATATTTAGATTCATGTTTAACCCTTATTTGCTAGCTGTGCTGACAAGTAATTACATGACAACATCCTTATTTCAATGTGATTTTTTTTTTTTTTTTTTTTTTGAAAATTTAGAAAGTGATGCGTGAATCTCAGCTTAGAGGTTAAAATATATACTCCCTCCGGTCACATTTATAAGCAAAAAACACTTTTTTAGATACATTGAATACTTAATGTATGTAGTCACATTTATAGGTCAGGTACATTAATTATTTAATGTACCTAAAAAACTATTTTTTGCTTATAAATGTGACCGGAGGGAGTACAATACAAGTTTATGGTTGGATTGGAAAAACACTTTAAACTTTGAAATCATTGGACATCACTTTCAACATTGCCAACCAATTGTTTATTTTATGATTTGACCTGCCCATTTTGATCGCGGCAAAATACACCCTTCGTAGGATAAGAGTCTGCAACTTAATGTTGTATATTCAGTCTTCAAATTGGGATTTAGGTATAACTCAATCTCGAGATTTAGCTCAAGAATTGCAAGGATTAATTTAGCCATATCTCTAGTTTATGTGGGATCTCAACATCAAGAATTTGTTCTACTGTTGAGCTTGTTCTGTTTTACAAGCCACTAGAATCAGGCCAAATTAACCTCTACATCTCAAGTTTTGTTGCGTTGAAGATAAGCTGTCCAAAACTAAACTCTAGGAAATCTTACTTATTTTAACTCAAGAGTGCACCACCTCTTAGCTTAATTGGAACTGACTCATTATATAACACAATTCATTTGCATGAATTCTACAACTCAAACTTTGGGCAACGGCTGTCAGTTATGGTTTTCTCCTTATAATATTTCTTTGATAAAGAAACCATGCTAGATACATATTTTATCTTGTGGTTATTAGAAGGGGTCAGAATACATGACTGAACAGAATAATAGGAGACATATATTATGCAATGTCACACATGAGCTGAAAAATGGAAACCATAAGGTAAGATTTATAATTTATAAACATGTTCATGCAGCAAAGTTAAGGTTTAATGTATCAGATGGGTGCACTCACAGTCTTGTTAGGACTATAACCATGTTTTATAATTCACTAAACCTTATTTACACTTACAATTCCCAAATTATAATCCCGCCAAAATTATTCTCTTAGCAACAATAGCTAATCAGCAGCCACAATGGTCAAACTAATTCTCAAGCAAAACATTGAAAGGTGCCAAAGCAGTATGGCGCTTGATGATTATTAACTTTCTAGAAGAAATCAGAACAAATAAACCATGAAACTCCCAAATTCTTGTCAATGTGGAAATCATAAATTTCCATGAGAAAAAGACATCCAAGGAAAAAAGAGGGAAATGAATTTAAAACATGAATATAGTTTGTTTGTATAATCACTATATGAAGACATAGGCTTATCTTCTATAAGAAAAATTATTACTGGTTTGTGAGGAGAATCATAGATGAAAGATATAGTAATCATATTTATAAAATGGATATAAACTTAAAGTTTTGTTGAACAACACGGCGTCTCGGATTTTCAGGTTGAAGGAAATGGACTAAAGATGAAAAAAAAATAAAAAATTACAGTTCCTACCCCAAGACTGACAGTGTGCAGTTTTTGTGTTTTCACATTTTCACCGTCCTCTTTCTCATAGTTCCTCTGTTGAAAGTTTTAGCTGTGTGTGTGTGTGTTGAACTGAGGCGTGTAAGGGCATTTTAAAAAGCCTTTAACTTGCCTTAGATGTCATCAACATGATTTTCTTTGGCTACCTGTGTTTCTGAAGCATGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGTGTACAATACACCAAAAATGGTGGGACCCCTTCCCGTACCCTGCGTATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTTTTTACCTGTGTTTCTGAAGCATGTAGAGCTCTGCTCTGTATCATGGATTAATTAATGGTATATCATTGGGTCACTCCATGGGGTTCTGCATAGATGCTACTATGCTAGTTCATACTTTGTGGTCATCTAGTGAGTAGTGATTATAGTCTATGTCATCCCGCTTAGTGATTGTTTTCTTATTTCACTCAGAGGCTGCAATTTTGGTAAACCATTTAAGATGCTTTTTCTATAATTTGTACATACTGTGTTATCTTAAAACAATAAACCTGAGGACAGGTACTGACTTGCCCATTTTATATTTTGTCCATTATTTTATTATTATGAAAATTTATTACTTAACCTATTTTAAATAACCTTTTAGCTAGTATTTATAGGTGAGGATAGTACTGTTGAATTTAAGTGATCGAGTCTTCTGCTAATTATCATTCAACTAGGTATACCTGATATTTATTGGAATTGTTCTAACCTAATCTTTGAATTTGTATTATTCTGCAGCTTATCCTGCTTGATGCAATGAGAGAAGATGAAGAACCTGAAGCTAAAAAGAATTTGGATGAGAAAATGAAAAATGTTGAAGTAAAAGAAACTGCTCTTGCAAATACAGAAGCTAACGTTACTCGCCATATACCACCATATAATTCTTCTGCAACTACACCTCAGGAGGCTTATGTATTGGACAAAATCATCCTTGCAGACGAATGGAATTACCTTCAAGACATTTATTATAGTTTGCAAAAGGAAGAAGCAGCAGACTTCAGTCTTTATCCATCTTTTATTTGCAACAGGATAAACAGATTAAAGAAGATTGAGGTACTTATACATATATAGCCTTTTCGCTTAAAATATAACTGTAGAGTTCGTAATTATTGGCCATTTGGAACCCTCAGAGTTGAAAATAATAGTTTTGCTACCACCGGTGATACTATACTTGCATATATTAATATGTAAGGGTAAGAAATGTTTTGACCCCTGCTCATTCAATATTTATTACAAGGAGATATTTTATCATCAACATTTCTTGAATTTAGTAGATGTTGTCTATAATATTTGGTGACCCCCCCAACCCACCCCACCCCAGGGGGATTGTCTGTTGTAGTTAGCCAATTAATTAAACTGTTATAGTAGTTTCTGGACCTGTTATTATTTTATTCTATATTTCGTTTTATCAATACTTTGAAAGTAAAGGAAGCTTGGACACTTCATAATGGAAACTATATCTTGTCATTTCTGTATCATACATGCATTCATGAGAGTTCATGAACTGTATGCCTTTTGTATTTTTTCACTTCCTATTTTTTTAAAAACTTTCATGTGGATACGAATGGAAATGCACAATATAGAAGTCTAGAAACGATCTTCTGTCAATAATAAGGTGGAGTCAATAAGGTGGAGTCTGTTGAGGAAGTAGTTGACAAAATTAAGGTGTTGGCTTGGCGTTGGTATCTTGGTAGGTTGGCAAAGAATTGGTGCTTCTATTACAAATGTTCGTGGGATCCATTGATTTGTCTGTCAGAGGTAGAAAATTTTCTGTTTCGAATTCCTGGGGCAGGTGTATTGCGGGTTTGTTAAGTTCTGATCAGATTGCCTTATCAGTTTCGATTTTGCCTACTGTTTGGTCATTCTGTTTTGCTGTACTGAACAGTTAATTTGGCAACTGCTGTGTTGGGACTGGGGTGATTTTGTGGCTATTTTTGTTTTATCACCACAGCAGTAGTCAATCTCTTAATCTGAATTTGTGTTGCTATTTTTCCTGCTTCAGGATGCCACGTTTTGGTGTTTAGTGGTTTGTTGTGCCATATTTTTTTTTTCTTGGCAGATATGGTCCTTATTGTTTATCTGTTTGGAGCTGGTGTTTGGCAGTGATAGGGGACTGATTTTTTGCTGGGTTGGGGTCTGTTTCTGCTGTTATTACCTGGCTGCACTTTTATTGAATTAGTAGGCTTGAGTTGAGTTATGTTTTTTCATTGTTTTGTTTGGATGTGTATTGGTTTTGGTTTCTTTCCTAAAATAAAGTTCTCTCTGAGATTTGTTTTTGCTGATTAAATTATGATATACGTTGTGTATTTTTTCTATTTATAGGACGATTCCGAAAAGAAGAAGCTTTCTTGCATACTTTCATTCATCAATTATCTTGTCAAGTTTAAAGATCAGCACTCCATGGATGGTATTTCCTCTTCAAAGTTCGAGAAACTTCCCTACACTCTGCATCATAGATTTACAACAATGTTTGATGTTTCTGAATCAAGAAGGCTGCCACCTGAAAAGCTGAATCTTCTCATTTCTTATGTTTTGGTGCTCACACTTTTCTCCGACGATTTCCGCACCGACTACAGAGATATAGCAAAGGATCTAAGGATGACCACACTAACGCTGAGAACAATCTTTAAGCATTTGGGTTGCAAATTGATATCCTCTCAGAATGTTTCCTATGCCACACTTCGTATCCCACTTACATTTCCTCAGATAAGGCAAAGGAGGAAGAAGAACAAGAACAAGTTATGA

Protein sequence

>MS.gene24697.t1

MDTEPPPEPVQAKIEVVSSDPTKMPPFVGYFTSGFDPVKSSSGSTDVQVYRNKVMHKRTELVVSPAGSSVEFVGTSYEGEAAAAARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPPPTPTKMVEEMTAEQRTQQKRKAVAALGTERSNQMLILLDAMREDEEPEAKKNLDEKMKNVEVKETALANTEANVTRHIPPYNSSATTPQEAYVLDKIILADEWNYLQDIYYSLQKEEAADFSLYPSFICNRINRLKKIEDDSEKKKLSCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTTMFDVSESRRLPPEKLNLLISYVLVLTLFSDDFRTDYRDIAKDLRMTTLTLRTIFKHLGCKLISSQNVSYATLRIPLTFPQIRQRRKKNKNKL