Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41224.t1 | XP_024630908.1 | 88.9 | 198 | 20 | 1 | 1 | 196 | 1 | 198 | 1.40E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41224.t1 | O82798 | 68.1 | 163 | 45 | 4 | 6 | 165 | 32 | 190 | 1.5e-53 | 210.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41224.t1 | A0A396JVZ4 | 88.9 | 198 | 20 | 1 | 1 | 196 | 1 | 198 | 9.8e-83 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41224.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044333 | MS.gene41224 | PPI |
| MS.gene41224 | MS.gene70470 | PPI |
| MS.gene25697 | MS.gene41224 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41224.t1 | MTR_1g049100 | 89.899 | 198 | 17 | 2 | 1 | 196 | 1 | 197 | 2.76e-109 | 311 |
| MS.gene41224.t1 | MTR_5g036480 | 67.511 | 237 | 36 | 4 | 1 | 196 | 1 | 237 | 6.06e-89 | 261 |
| MS.gene41224.t1 | MTR_4g106590 | 59.669 | 181 | 66 | 3 | 3 | 179 | 21 | 198 | 9.40e-63 | 194 |
| MS.gene41224.t1 | MTR_3g078613 | 61.006 | 159 | 56 | 2 | 7 | 162 | 22 | 177 | 1.31e-60 | 187 |
| MS.gene41224.t1 | MTR_3g078613 | 60.625 | 160 | 56 | 3 | 7 | 162 | 22 | 178 | 7.98e-59 | 183 |
| MS.gene41224.t1 | MTR_7g490310 | 51.813 | 193 | 78 | 3 | 7 | 184 | 8 | 200 | 2.20e-56 | 178 |
| MS.gene41224.t1 | MTR_8g038620 | 59.155 | 142 | 53 | 2 | 7 | 143 | 8 | 149 | 7.97e-51 | 162 |
| MS.gene41224.t1 | MTR_3g093860 | 58.696 | 138 | 50 | 3 | 4 | 138 | 14 | 147 | 1.01e-49 | 158 |
| MS.gene41224.t1 | MTR_3g015490 | 52.903 | 155 | 61 | 3 | 7 | 152 | 3 | 154 | 8.39e-46 | 149 |
| MS.gene41224.t1 | MTR_3g088630 | 50.676 | 148 | 57 | 3 | 6 | 138 | 20 | 166 | 8.62e-43 | 143 |
| MS.gene41224.t1 | MTR_6g007460 | 41.622 | 185 | 52 | 4 | 7 | 138 | 10 | 191 | 2.63e-35 | 123 |
| MS.gene41224.t1 | MTR_4g061360 | 35.075 | 134 | 75 | 2 | 8 | 141 | 89 | 210 | 1.82e-17 | 80.1 |
| MS.gene41224.t1 | MTR_3g092780 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 5.36e-17 | 78.6 |
| MS.gene41224.t1 | MTR_3g092780 | 29.932 | 147 | 88 | 2 | 8 | 151 | 56 | 190 | 6.16e-17 | 78.6 |
| MS.gene41224.t1 | MTR_3g092780 | 29.730 | 148 | 88 | 2 | 8 | 151 | 56 | 191 | 9.80e-17 | 77.8 |
| MS.gene41224.t1 | MTR_3g092780 | 29.730 | 148 | 88 | 2 | 8 | 151 | 56 | 191 | 1.09e-16 | 77.8 |
| MS.gene41224.t1 | MTR_7g118260 | 31.757 | 148 | 87 | 3 | 14 | 161 | 22 | 155 | 6.08e-16 | 75.5 |
| MS.gene41224.t1 | MTR_4g051330 | 52.239 | 67 | 29 | 1 | 89 | 152 | 77 | 143 | 5.83e-15 | 69.3 |
| MS.gene41224.t1 | MTR_7g118260 | 32.308 | 130 | 74 | 3 | 14 | 143 | 22 | 137 | 2.14e-14 | 71.2 |
| MS.gene41224.t1 | MTR_8g024260 | 30.882 | 136 | 82 | 1 | 8 | 143 | 36 | 159 | 5.09e-14 | 70.1 |
| MS.gene41224.t1 | MTR_1g067110 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.23e-13 | 68.2 |
| MS.gene41224.t1 | MTR_1g067110 | 28.788 | 132 | 82 | 1 | 10 | 141 | 87 | 206 | 2.66e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41224.t1 | AT1G59940 | 59.406 | 202 | 61 | 5 | 4 | 188 | 29 | 226 | 1.82e-71 | 216 |
| MS.gene41224.t1 | AT1G59940 | 59.406 | 202 | 61 | 5 | 4 | 188 | 121 | 318 | 5.68e-70 | 216 |
| MS.gene41224.t1 | AT1G10470 | 70.199 | 151 | 40 | 3 | 6 | 155 | 18 | 164 | 1.75e-69 | 212 |
| MS.gene41224.t1 | AT1G10470 | 70.199 | 151 | 40 | 3 | 6 | 155 | 32 | 178 | 3.66e-69 | 211 |
| MS.gene41224.t1 | AT3G48100 | 65.563 | 151 | 50 | 1 | 8 | 158 | 25 | 173 | 1.16e-63 | 195 |
| MS.gene41224.t1 | AT5G62920 | 72.656 | 128 | 32 | 1 | 8 | 135 | 25 | 149 | 3.45e-61 | 189 |
| MS.gene41224.t1 | AT1G74890 | 71.318 | 129 | 34 | 1 | 7 | 135 | 17 | 142 | 3.43e-59 | 184 |
| MS.gene41224.t1 | AT1G19050 | 65.441 | 136 | 44 | 1 | 7 | 142 | 23 | 155 | 2.41e-58 | 182 |
| MS.gene41224.t1 | AT2G40670 | 59.259 | 135 | 55 | 0 | 4 | 138 | 25 | 159 | 1.32e-54 | 171 |
| MS.gene41224.t1 | AT3G57040 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 1.87e-53 | 171 |
| MS.gene41224.t1 | AT3G57040 | 58.993 | 139 | 50 | 2 | 7 | 138 | 8 | 146 | 1.87e-53 | 171 |
| MS.gene41224.t1 | AT3G56380 | 61.194 | 134 | 48 | 2 | 6 | 138 | 18 | 148 | 2.28e-53 | 167 |
| MS.gene41224.t1 | AT2G41310 | 59.441 | 143 | 52 | 2 | 1 | 138 | 3 | 144 | 4.94e-53 | 169 |
| MS.gene41224.t1 | AT2G40670 | 58.824 | 136 | 55 | 1 | 4 | 138 | 25 | 160 | 8.22e-53 | 167 |
| MS.gene41224.t1 | AT3G56380 | 60.741 | 135 | 48 | 3 | 6 | 138 | 18 | 149 | 1.55e-51 | 163 |
| MS.gene41224.t1 | AT1G10470 | 56.044 | 91 | 30 | 6 | 70 | 155 | 17 | 102 | 1.68e-23 | 92.4 |
| MS.gene41224.t1 | AT5G24470 | 30.216 | 139 | 83 | 3 | 8 | 146 | 52 | 176 | 2.20e-15 | 73.9 |
| MS.gene41224.t1 | AT2G46790 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.31e-15 | 73.9 |
| MS.gene41224.t1 | AT2G46790 | 31.343 | 134 | 80 | 2 | 8 | 141 | 37 | 158 | 2.79e-15 | 73.6 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.88e-14 | 71.2 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.88e-14 | 71.2 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 1.88e-14 | 71.2 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.07e-14 | 70.9 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.16e-14 | 70.5 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.16e-14 | 70.5 |
| MS.gene41224.t1 | AT5G60100 | 34.848 | 132 | 74 | 2 | 10 | 141 | 66 | 185 | 3.16e-14 | 70.5 |
| MS.gene41224.t1 | AT2G07440 | 60.000 | 50 | 20 | 0 | 89 | 138 | 9 | 58 | 1.98e-13 | 64.7 |
| MS.gene41224.t1 | AT5G02810 | 28.358 | 134 | 84 | 1 | 8 | 141 | 78 | 199 | 1.03e-12 | 66.2 |
Find 39 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGATTACATGCTTCTTC+TGG | 0.290924 | 1.4:-35987961 | None:intergenic |
| ATTGAAAATATTCAGATGTT+TGG | 0.307010 | 1.4:+35987825 | MS.gene41224:intron |
| AACTCATAACCAGTCATTTC+TGG | 0.328147 | 1.4:-35986970 | None:intergenic |
| TTTGTTGCCTTAGCCTTTGA+AGG | 0.366124 | 1.4:+35986918 | MS.gene41224:intron |
| CTCAAAATTTCTGCTTGTAA+AGG | 0.386939 | 1.4:+35986513 | MS.gene41224:CDS |
| TTCTGAAGAGGTTCATGTAT+TGG | 0.402386 | 1.4:+35986446 | MS.gene41224:CDS |
| TACTGGAATTTCCTTAAAAG+TGG | 0.438337 | 1.4:-35987127 | None:intergenic |
| TTAGTTACTGCTGTGGATAG+TGG | 0.438893 | 1.4:+35986739 | MS.gene41224:intron |
| TTCACATCACATAACTTCAC+TGG | 0.475573 | 1.4:-35987877 | None:intergenic |
| ATAACAGTACCTGTCTATGC+GGG | 0.487586 | 1.4:-35987178 | None:intergenic |
| TCAGAAGACATAATCACTAC+TGG | 0.489512 | 1.4:-35987144 | None:intergenic |
| ATGTGAAGGTGATGATGAAA+TGG | 0.496627 | 1.4:-35987998 | None:intergenic |
| ATATTCTGCCCCGCATAGAC+AGG | 0.510615 | 1.4:+35987169 | MS.gene41224:CDS |
| ATATTCAGATGTTTGGAAGA+AGG | 0.511460 | 1.4:+35987832 | MS.gene41224:intron |
| TATTGCATGCCAGAAATGAC+TGG | 0.520879 | 1.4:+35986961 | MS.gene41224:CDS |
| TGCTTGATTCTTCAATCAGA+CGG | 0.521707 | 1.4:+35988049 | MS.gene41224:CDS |
| TTGATCGGAAAGTTATTGAA+AGG | 0.524082 | 1.4:+35986487 | MS.gene41224:CDS |
| TGACAACCCAAATAGTCATT+CGG | 0.532453 | 1.4:-35988088 | None:intergenic |
| ATAACAAGATCCACCTTCAA+AGG | 0.539532 | 1.4:-35986931 | None:intergenic |
| GTTGCCTTAGCCTTTGAAGG+TGG | 0.539999 | 1.4:+35986921 | MS.gene41224:intron |
| TACATGACAACAAGGGAGGT+TGG | 0.562595 | 1.4:+35987913 | MS.gene41224:CDS |
| AGCACACTGGATGCAGACAA+TGG | 0.577593 | 1.4:-35988030 | None:intergenic |
| ACAACAAGGGAGGTTGGAGT+AGG | 0.598300 | 1.4:+35987919 | MS.gene41224:CDS |
| ATGTTTGGAAGAAGGTGCAA+AGG | 0.598645 | 1.4:+35987840 | MS.gene41224:CDS |
| AGAGAGAAGTCTGAATCTGA+TGG | 0.604808 | 1.4:+35986799 | MS.gene41224:CDS |
| GATGGAGACAAATTCTGAAG+AGG | 0.610289 | 1.4:+35986434 | None:intergenic |
| TTGATGATAGTCTCATTGAT+CGG | 0.612021 | 1.4:+35986472 | MS.gene41224:CDS |
| GTGAACTTTAGTTACTGCTG+TGG | 0.629072 | 1.4:+35986732 | MS.gene41224:intron |
| TGAAGGGTTACATGACAACA+AGG | 0.633631 | 1.4:+35987905 | MS.gene41224:CDS |
| GATTGAAGAATCAAGCACAC+TGG | 0.636985 | 1.4:-35988043 | None:intergenic |
| ATGTGATGTGAAACGACTGA+AGG | 0.663812 | 1.4:+35987888 | MS.gene41224:CDS |
| TGTGATGTGAAACGACTGAA+GGG | 0.670059 | 1.4:+35987889 | MS.gene41224:CDS |
| TATAACAGTACCTGTCTATG+CGG | 0.670864 | 1.4:-35987179 | None:intergenic |
| AATGGAGATGATGAATGTGA+AGG | 0.695750 | 1.4:-35988012 | None:intergenic |
| TAACAGTACCTGTCTATGCG+GGG | 0.697429 | 1.4:-35987177 | None:intergenic |
| GGTGATGATGAAATGGACGG+TGG | 0.704627 | 1.4:-35987991 | None:intergenic |
| GGGTTACATGACAACAAGGG+AGG | 0.715675 | 1.4:+35987909 | MS.gene41224:CDS |
| GAAGGTGATGATGAAATGGA+CGG | 0.719690 | 1.4:-35987994 | None:intergenic |
| GAAGGGTTACATGACAACAA+GGG | 0.758159 | 1.4:+35987906 | MS.gene41224:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTTAAAAAAATAGT+TGG | - | chr1.4:35987745-35987764 | None:intergenic | 10.0% |
| !! | TTTAAGGGATTATTATTATT+AGG | + | chr1.4:35987217-35987236 | MS.gene41224:intron | 15.0% |
| !!! | TATAGTAATGATTTTTTCAA+TGG | - | chr1.4:35987034-35987053 | None:intergenic | 15.0% |
| !! | ATTGAAAATATTCAGATGTT+TGG | + | chr1.4:35987825-35987844 | MS.gene41224:intron | 20.0% |
| !!! | CCAATGATTATACTTTTTAA+TGG | + | chr1.4:35987410-35987429 | MS.gene41224:intron | 20.0% |
| !!! | CCATTAAAAAGTATAATCAT+TGG | - | chr1.4:35987413-35987432 | None:intergenic | 20.0% |
| !!! | TATTTTTAGACCAAAGAAAA+AGG | + | chr1.4:35987532-35987551 | MS.gene41224:intron | 20.0% |
| ! | TGAGTTGCTCAAAAAAATTA+AGG | + | chr1.4:35986987-35987006 | MS.gene41224:CDS | 25.0% |
| !! | GTTATTGTTATTAGTTACCA+CGG | + | chr1.4:35987762-35987781 | MS.gene41224:intron | 25.0% |
| !! | TTATTGTTATTAGTTACCAC+GGG | + | chr1.4:35987763-35987782 | MS.gene41224:intron | 25.0% |
| !! | TTGTGTCATTGAAAACATTA+AGG | - | chr1.4:35987472-35987491 | None:intergenic | 25.0% |
| !!! | ACGAAATAGATGTTTTTTGA+GGG | + | chr1.4:35987345-35987364 | MS.gene41224:intron | 25.0% |
| !!! | TACGAAATAGATGTTTTTTG+AGG | + | chr1.4:35987344-35987363 | MS.gene41224:intron | 25.0% |
| !!! | TTTTAAGTGTCCTTTTTCTT+TGG | - | chr1.4:35987545-35987564 | None:intergenic | 25.0% |
| ATATTCAGATGTTTGGAAGA+AGG | + | chr1.4:35987832-35987851 | MS.gene41224:intron | 30.0% | |
| CCTGCTTCAAAATGAAATTT+CGG | - | chr1.4:35987101-35987120 | None:intergenic | 30.0% | |
| CTCAAAATTTCTGCTTGTAA+AGG | + | chr1.4:35986513-35986532 | MS.gene41224:CDS | 30.0% | |
| TACTGGAATTTCCTTAAAAG+TGG | - | chr1.4:35987130-35987149 | None:intergenic | 30.0% | |
| TTGATCGGAAAGTTATTGAA+AGG | + | chr1.4:35986487-35986506 | MS.gene41224:CDS | 30.0% | |
| ! | TTGATGATAGTCTCATTGAT+CGG | + | chr1.4:35986472-35986491 | MS.gene41224:CDS | 30.0% |
| !!! | CGAAATAGATGTTTTTTGAG+GGG | + | chr1.4:35987346-35987365 | MS.gene41224:intron | 30.0% |
| AACTCATAACCAGTCATTTC+TGG | - | chr1.4:35986973-35986992 | None:intergenic | 35.0% | |
| AATGGAGATGATGAATGTGA+AGG | - | chr1.4:35988015-35988034 | None:intergenic | 35.0% | |
| ATAACAAGATCCACCTTCAA+AGG | - | chr1.4:35986934-35986953 | None:intergenic | 35.0% | |
| GTAAAGGTGAGTTTGTGATT+TGG | + | chr1.4:35986529-35986548 | MS.gene41224:intron | 35.0% | |
| TATAACAGTACCTGTCTATG+CGG | - | chr1.4:35987182-35987201 | None:intergenic | 35.0% | |
| TCAGAAGACATAATCACTAC+TGG | - | chr1.4:35987147-35987166 | None:intergenic | 35.0% | |
| TGCTTGATTCTTCAATCAGA+CGG | + | chr1.4:35988049-35988068 | MS.gene41224:CDS | 35.0% | |
| TTCACATCACATAACTTCAC+TGG | - | chr1.4:35987880-35987899 | None:intergenic | 35.0% | |
| ! | ATGTGAAGGTGATGATGAAA+TGG | - | chr1.4:35988001-35988020 | None:intergenic | 35.0% |
| ! | TCTGATGGTTCTATTGTATG+TGG | + | chr1.4:35986814-35986833 | MS.gene41224:intron | 35.0% |
| ! | TTCTGAAGAGGTTCATGTAT+TGG | + | chr1.4:35986446-35986465 | MS.gene41224:CDS | 35.0% |
| !!! | AATCAGAGCACTGCAATTTT+TGG | + | chr1.4:35986762-35986781 | MS.gene41224:CDS | 35.0% |
| !!! | ATCAGAGCACTGCAATTTTT+GGG | + | chr1.4:35986763-35986782 | MS.gene41224:CDS | 35.0% |
| !!! | CCGAAATTTCATTTTGAAGC+AGG | + | chr1.4:35987098-35987117 | MS.gene41224:intron | 35.0% |
| AACTTCATCACAATTTCCCG+TGG | - | chr1.4:35987782-35987801 | None:intergenic | 40.0% | |
| AGAGAGAAGTCTGAATCTGA+TGG | + | chr1.4:35986799-35986818 | MS.gene41224:CDS | 40.0% | |
| ATAACAGTACCTGTCTATGC+GGG | - | chr1.4:35987181-35987200 | None:intergenic | 40.0% | |
| ATGTGATGTGAAACGACTGA+AGG | + | chr1.4:35987888-35987907 | MS.gene41224:CDS | 40.0% | |
| GAAGGGTTACATGACAACAA+GGG | + | chr1.4:35987906-35987925 | MS.gene41224:CDS | 40.0% | |
| GAGTGATTACATGCTTCTTC+TGG | - | chr1.4:35987964-35987983 | None:intergenic | 40.0% | |
| GATTGAAGAATCAAGCACAC+TGG | - | chr1.4:35988046-35988065 | None:intergenic | 40.0% | |
| GTGAACTTTAGTTACTGCTG+TGG | + | chr1.4:35986732-35986751 | MS.gene41224:intron | 40.0% | |
| TATTGCATGCCAGAAATGAC+TGG | + | chr1.4:35986961-35986980 | MS.gene41224:CDS | 40.0% | |
| TGAAGGGTTACATGACAACA+AGG | + | chr1.4:35987905-35987924 | MS.gene41224:CDS | 40.0% | |
| TGTGATGTGAAACGACTGAA+GGG | + | chr1.4:35987889-35987908 | MS.gene41224:CDS | 40.0% | |
| TTAGTTACTGCTGTGGATAG+TGG | + | chr1.4:35986739-35986758 | MS.gene41224:intron | 40.0% | |
| ! | ATGTTTGGAAGAAGGTGCAA+AGG | + | chr1.4:35987840-35987859 | MS.gene41224:CDS | 40.0% |
| ! | GAAGGTGATGATGAAATGGA+CGG | - | chr1.4:35987997-35988016 | None:intergenic | 40.0% |
| ! | TTTGTTGCCTTAGCCTTTGA+AGG | + | chr1.4:35986918-35986937 | MS.gene41224:intron | 40.0% |
| !!! | TCAGAGCACTGCAATTTTTG+GGG | + | chr1.4:35986764-35986783 | MS.gene41224:CDS | 40.0% |
| AGATCCACCTTCAAAGGCTA+AGG | - | chr1.4:35986928-35986947 | None:intergenic | 45.0% | |
| TAACAGTACCTGTCTATGCG+GGG | - | chr1.4:35987180-35987199 | None:intergenic | 45.0% | |
| TACATGACAACAAGGGAGGT+TGG | + | chr1.4:35987913-35987932 | MS.gene41224:CDS | 45.0% | |
| !! | GCAGGAATCGTCCACTTTTA+AGG | + | chr1.4:35987116-35987135 | MS.gene41224:intron | 45.0% |
| !!! | AGCACTGCAATTTTTGGGGT+TGG | + | chr1.4:35986768-35986787 | MS.gene41224:CDS | 45.0% |
| !! | TAATTTATACTTATATATAA+TGG | - | chr1.4:35987578-35987597 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTAAACTTTTTTA+AGG | + | chr1.4:35987201-35987220 | MS.gene41224:intron | 5.0% |
| !!! | TTTTTTTTAAACTTTTTTAA+GGG | + | chr1.4:35987202-35987221 | MS.gene41224:intron | 5.0% |
| ACAACAAGGGAGGTTGGAGT+AGG | + | chr1.4:35987919-35987938 | MS.gene41224:CDS | 50.0% | |
| AGCACACTGGATGCAGACAA+TGG | - | chr1.4:35988033-35988052 | None:intergenic | 50.0% | |
| ATATTCTGCCCCGCATAGAC+AGG | + | chr1.4:35987169-35987188 | MS.gene41224:CDS | 50.0% | |
| GGGTTACATGACAACAAGGG+AGG | + | chr1.4:35987909-35987928 | MS.gene41224:CDS | 50.0% | |
| ! | GGTGATGATGAAATGGACGG+TGG | - | chr1.4:35987994-35988013 | None:intergenic | 50.0% |
| ! | GTTGCCTTAGCCTTTGAAGG+TGG | + | chr1.4:35986921-35986940 | MS.gene41224:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35986435 | 35988095 | 35986435 | ID=MS.gene41224 |
| chr1.4 | mRNA | 35986435 | 35988095 | 35986435 | ID=MS.gene41224.t1;Parent=MS.gene41224 |
| chr1.4 | exon | 35986435 | 35986534 | 35986435 | ID=MS.gene41224.t1.exon1;Parent=MS.gene41224.t1 |
| chr1.4 | CDS | 35986435 | 35986534 | 35986435 | ID=cds.MS.gene41224.t1;Parent=MS.gene41224.t1 |
| chr1.4 | exon | 35986743 | 35986828 | 35986743 | ID=MS.gene41224.t1.exon2;Parent=MS.gene41224.t1 |
| chr1.4 | CDS | 35986743 | 35986828 | 35986743 | ID=cds.MS.gene41224.t1;Parent=MS.gene41224.t1 |
| chr1.4 | exon | 35986931 | 35987008 | 35986931 | ID=MS.gene41224.t1.exon3;Parent=MS.gene41224.t1 |
| chr1.4 | CDS | 35986931 | 35987008 | 35986931 | ID=cds.MS.gene41224.t1;Parent=MS.gene41224.t1 |
| chr1.4 | exon | 35987120 | 35987190 | 35987120 | ID=MS.gene41224.t1.exon4;Parent=MS.gene41224.t1 |
| chr1.4 | CDS | 35987120 | 35987190 | 35987120 | ID=cds.MS.gene41224.t1;Parent=MS.gene41224.t1 |
| chr1.4 | exon | 35987840 | 35988095 | 35987840 | ID=MS.gene41224.t1.exon5;Parent=MS.gene41224.t1 |
| chr1.4 | CDS | 35987840 | 35988095 | 35987840 | ID=cds.MS.gene41224.t1;Parent=MS.gene41224.t1 |
| Gene Sequence |
| Protein sequence |
